GC Percent in 5-Base Windows (gc5Base)
 

Position: scaffold_149545.1-136892:3,932-17,525

Total Bases in view: 13,594

Statistics on: 13,055 bases (% 96.0350 coverage)

Database: tupBel1 Table: gc5Base
Chrom Data
start 		Data
end 		# of Data
values 		Each data
value spans
# bases 		Bases
covered 		Minimum Maximum Range Mean Variance Standard
deviation
scaffold_149545.1-136892 3936 17525 2,611 5 13,055 (96.04%) 0 100 100 40.6312 592.505 24.3414

25 bin histogram on 2611 values (zero count bins not shown)
bin
range in bin
minimum maximum
 count Relative
Frequency		 log2(Frequency)Cumulative
Relative
Frequency
(CRF)		 1.0 - CRF
0 0 4 260 0.0995787 -3.32802 0.0995787 0.900421
4 16 20 653 0.250096 -1.99945 0.349674 0.650326
9 36 40 784 0.300268 -1.73568 0.649943 0.350057
12 48 52 1 0.000382995 -11.3504 0.650326 0.349674
14 56 60 581 0.22252 -2.16799 0.872846 0.127154
19 76 80 276 0.105707 -3.24186 0.978552 0.0214477
25 100 104 56 0.0214477 -5.54303 1 0

Data schema/format description and download

Go to GC Percent track controls

Data last updated at UCSC: 2006-12-21

Description

The GC percent track shows the percentage of G (guanine) and C (cytosine) bases in 5-base windows. High GC content is typically associated with gene-rich areas.

This track may be configured in a variety of ways to highlight different apsects of the displayed information. Click the "Graph configuration help" link for an explanation of the configuration options.

Credits

The data and presentation of this graph were prepared by Hiram Clawson.