Multiz Alignments of 60 Vertebrates

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Capitalize exons based on show bases

Place cursor over species for alignment detail. Click on 'B' to link to browser for aligned species, click on 'D' to get DNA for aligned species.
Alignment block 1 of 736 in window, 56694976 - 56694986, 11 bps B D Mouse gtcctgtg---ctc-- B D Rat gtcttgtg---ttc-- B D Naked mole-rat gtt---tg---cgc-- B D Guinea pig ttc---tg---ggc-- B D Rabbit gtc---cc---tgc-- B D Human ctg---tg---cgc-- B D Chimp ctg---tg---cgc-- B D Gorilla ctg---tg---cgc-- B D Orangutan ctg---tg---cgc-- B D Gibbon ctg---tg---cgc-- B D Rhesus cgg---tg---cgt-- B D Baboon cgg---tg---cgt-- B D Marmoset cag---tg---ccc-- B D Squirrel monkey cag---tg---cgc-- B D Mouse lemur ttg---tg---cgc-- B D Bushbaby ctg---tg---cgc-- B D Tree shrew ccg---tg---cgc-- B D Pig ctg---tg---c-c-- B D Alpaca ctc---tg---ccc-- B D Dolphin ------tg---cgc-- B D Sheep ctt---tg---cgc-- B D Cat ------------cc-- B D Dog ctg---gg---agc-- B D Panda ctg---tg---acc-- B D Horse ctt---tg---gcc-- D Little brown bat ---------------- B D Megabat ctg---tg---cgc-- B D Hedgehog ctg---aa---aat-- B D Shrew ctt---ggtgcact-- B D Elephant cgg---tg---cgatc B D Manatee ctg---tg---cgatc B D Cow ================ B D Squirrel ================ B D Tarsier ================ B D Tenrec ================ B D Wallaby ================ B D Pika ================ B D Fugu ================ B D Atlantic cod ================ B D Nile tilapia ================ B D Zebrafish ================ B D X. tropicalis ================ B D Platypus ================ B D Turkey ================ B D Coelacanth ================ B D Tasmanian devil ================ B D Opossum ================ B D Lizard ================ B D Budgerigar ================ B D Zebra finch ================ B D Chicken ================ B D Painted turtle ================ B D Sloth NNNNNNNNNNNNNNNN B D Armadillo ================ B D Kangaroo rat ================ B D Rock hyrax ================ Inserts between block 1 and 2 in window B D Human 1bp B D Chimp 1bp B D Gorilla 1bp B D Orangutan 1bp B D Gibbon 1bp B D Rhesus 1bp B D Baboon 1bp B D Marmoset 1bp B D Squirrel monkey 1bp B D Mouse lemur 1bp B D Bushbaby 1bp B D Tree shrew 1bp B D Pig 1bp B D Alpaca 1bp B D Dolphin 1bp B D Sheep 1bp B D Panda 1bp D Little brown bat 1bp B D Megabat 1bp B D Hedgehog 1bp B D Shrew 1bp Alignment block 2 of 736 in window, 56694987 - 56695026, 40 bps B D Mouse ctctttag---tctgg--------ttttttaatttttttttcc-t------ca-----ctgca B D Rat ---tttag---tctgc--------ttttcaaagttctt---cc-t------tc-----cagca B D Naked mole-rat aatttcagcccccccg--------atgcctaggtttcc---cc-g------ca-----ctgga B D Guinea pig aacttcaa--ccgcag--------gtgcctgagtttcc---ccgg------ca-----cagga B D Rabbit --cttgag---cccg------------------------------------------------ B D Human agcgttag--ccgcct--------gtggttcagttccc---cgca------ca-----cgg-- B D Chimp agcgttag--ccgcct--------gtggttcagttccc---cgca------ca-----cgg-- B D Gorilla agcgttag--ccgcct--------gtggttcagttccc---cgca------ca-----cgc-- B D Orangutan agcattag--ccgtct--------gtggttcagttccc---cgaa------ca-----cgt-- B D Gibbon agcgttag--ctgcct--------gtggttcagttccc---cgca------ca-----cgg-- B D Rhesus cgcgttag--ccgcct--------gtggttcagttccc---tgca------ca-----cgg-- B D Baboon cgcgttag--ccgcct--------gtggttcagttccc---tgca------ca-----cgg-- B D Marmoset cgcgttag--cctcct--------gtggttcagttccc---ggca------ca-----cgg-- B D Squirrel monkey cgcgttag--cctcct--------gtggttcagttccc---ggca------ca-----cgg-- B D Mouse lemur cgcttcag--ctgcac--------gtgtttaaattccc---ggca------ca-----tgg-- B D Bushbaby cgcgttag--cggtgc--------gtggctccattctc---cgca------tg-----ctg-- B D Tree shrew agctttcg--ctgcgt--------gtggttactttctc---cgca------caccgcgcag-- B D Pig tgctttag--ccattc--------ctgcttggaac---------------------------- B D Alpaca tgctttag--ccgctt--------gtgattaagttctc---tgcacagggc------------ B D Dolphin tgctttag------------------------------------------------------- B D Sheep cgctgtag------------------------------------------------------- B D Cat -------------ctt--------gtgcgtaacttctc---ggcg------ca-----ccg-- B D Dog -------------------------tgcttaacttctc---cgcg------aa-----ccg-- B D Panda aactttag--cagcgt--------gtgcttaagttctc---cgcgt-----ac-----ccg-- B D Horse ------------gcgt--------gtggttacactctc---tgca------ca-----cgg-- D Little brown bat ggctttag--gcgccg--------gtggttgcgttctc---cgca------ca-----cag-- B D Megabat agctttag--ctgcaa--------gtggttacattctc---tgca------ca-----cct-- B D Hedgehog actttaag--taacttaaagaaactcggctacacactc------------------------- B D Shrew gcttttag--ccactcaagg----tcggttatgtccac---tgca------ca---------- B D Elephant ------------gctt--------gtagttaagttctc---ggta------ca---------- B D Manatee ------------gctt--------gtagttaagttctc---ggta------ca-----c-g-- B D Armadillo cgttttag--tcatgt--------gtggctaagttctc---cgca------ca-----tgg-- B D Cow =============================================================== B D Squirrel =============================================================== B D Tarsier =============================================================== B D Tenrec =============================================================== B D Wallaby =============================================================== B D Pika =============================================================== B D Fugu =============================================================== B D Atlantic cod =============================================================== B D Nile tilapia =============================================================== B D Zebrafish =============================================================== B D X. tropicalis =============================================================== B D Platypus =============================================================== B D Turkey =============================================================== B D Coelacanth =============================================================== B D Tasmanian devil =============================================================== B D Opossum =============================================================== B D Lizard =============================================================== B D Budgerigar =============================================================== B D Zebra finch =============================================================== B D Chicken =============================================================== B D Painted turtle =============================================================== B D Sloth NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN B D Kangaroo rat =============================================================== B D Rock hyrax =============================================================== Inserts between block 2 and 3 in window B D Alpaca 2bp B D Dolphin 18bp B D Sheep 13bp B D Cat 2bp B D Dog 2bp B D Panda 2bp B D Horse 2bp D Little brown bat 2bp B D Megabat 2bp B D Hedgehog 2bp B D Shrew 2bp Alignment block 3 of 736 in window, 56695027 - 56695027, 1 bps B D Mouse c B D Rat t B D Naked mole-rat t B D Guinea pig t B D Squirrel c B D Rabbit t B D Human c B D Chimp c B D Gorilla c B D Orangutan c B D Gibbon c B D Rhesus c B D Baboon c B D Marmoset c B D Squirrel monkey c B D Mouse lemur c B D Bushbaby t B D Tree shrew c B D Cat c B D Dog t B D Panda c B D Horse t D Little brown bat c B D Megabat c B D Hedgehog c B D Shrew c B D Manatee c B D Armadillo c B D Cow = B D Elephant - B D Pig - B D Tarsier = B D Tenrec = B D Wallaby = B D Pika = B D Alpaca = B D Sheep = B D Fugu = B D Atlantic cod = B D Nile tilapia = B D Zebrafish = B D X. tropicalis = B D Platypus = B D Turkey = B D Coelacanth = B D Tasmanian devil = B D Opossum = B D Lizard = B D Budgerigar = B D Zebra finch = B D Chicken = B D Painted turtle = B D Sloth N B D Kangaroo rat = B D Rock hyrax = B D Dolphin = Alignment block 4 of 736 in window, 56695028 - 56695034, 7 bps B D Mouse ctggcct B D Rat ccggctt B D Naked mole-rat gcggac- B D Guinea pig gcggcct B D Squirrel gagatct B D Rabbit atggcct B D Human gtggccc B D Chimp gtggccc B D Gorilla gaggccc B D Orangutan gtggccc B D Gibbon gtggccc B D Rhesus gtggccc B D Baboon gtggccc B D Marmoset gtggccc B D Squirrel monkey gtggcct B D Mouse lemur gtgaccc B D Bushbaby gtgaccc B D Tree shrew gcggcta B D Alpaca agccc-- B D Sheep --cgttc B D Cow ggcctcc B D Cat acggcca B D Dog gcggcca B D Panda gcagcca B D Horse --ggccc D Little brown bat --ggccc B D Megabat --ag-ct B D Hedgehog tgagccc B D Shrew cctggcc B D Manatee acggtcc B D Armadillo atggtct B D Elephant ------- B D Pig ------- B D Tarsier ======= B D Tenrec ======= B D Wallaby ======= B D Pika ======= B D Fugu ======= B D Atlantic cod ======= B D Nile tilapia ======= B D Zebrafish ======= B D X. tropicalis ======= B D Platypus ======= B D Turkey ======= B D Coelacanth ======= B D Tasmanian devil ======= B D Opossum ======= B D Lizard ======= B D Budgerigar ======= B D Zebra finch ======= B D Chicken ======= B D Painted turtle ======= B D Sloth NNNNNNN B D Kangaroo rat ======= B D Rock hyrax ======= B D Dolphin ======= Inserts between block 4 and 5 in window B D Naked mole-rat 1bp B D Guinea pig 1bp Alignment block 5 of 736 in window, 56695035 - 56695071, 37 bps B D Mouse ctgctaggat--------cc-------------------------------------------------- B D Rat ctgcgaggat--------cc-------------------------------------------------- B D Kangaroo rat ctgcctggag--------cc-------------------------------------------------- B D Naked mole-rat ttgcctggac--------ct-------------------------------------------------- B D Guinea pig ctgcctagat--------cc-------------------------------------------------- B D Squirrel ctgcttggag--------cc-------------------------------------------------- B D Rabbit cagcttgga---------ca-------------------------------------------------- B D Human gtgcctcgag--------cc-------------------------------------------------- B D Chimp gtgcctcgag--------cc-------------------------------------------------- B D Gorilla gtgcctcgag--------cc-------------------------------------------------- B D Orangutan ctgactcgag--------cc-------------------------------------------------- B D Gibbon ctgcctcgag--------cc-------------------------------------------------- B D Rhesus ctgcctcgag--------cc-------------------------------------------------- B D Baboon ctgcctcgag--------cc-------------------------------------------------- B D Marmoset ctaccttgag--------cc-------------------------------------------------- B D Squirrel monkey c-acctcgag--------cc-------------------------------------------------- B D Mouse lemur ctgcctc-agcctgcaaacc-------------------------------------------------- B D Bushbaby cgccctc-ag--------cc-------------------------------------------------- B D Tree shrew ctgcctcgag--------cc-------------------------------------------------- B D Pig -------------------c-------------------------------------------------- B D Alpaca ctgcttggag--------cc-------------------------------------------------- B D Dolphin ctgcttggag--------tc-------------------------------------------------- B D Sheep ctgcttggag--------cc-------------------------------------------------- B D Cow atctctggct--------cc-------------------------------------------------- B D Cat gggactggag--------cc-------------------------------------------------- B D Dog cagcctggag--------cc-------------------------------------------------- B D Panda cagcctggag--------cc-------------------------------------------------- B D Horse gcgcgtcgag--------ga-------------------------------------------------- D Little brown bat ctgcccggag--------cc-------------------------------------------------- B D Megabat ctgcctggag--------ccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn B D Hedgehog ctgcctggac--------cg-------------------------------------------------- B D Shrew ctgctgggag--------cc-------------------------------------------------- B D Elephant ------ttag--------cc-------------------------------------------------- B D Manatee ctgccttgag--------cc-------------------------------------------------- B D Armadillo ctgcctcgag--------cc-------------------------------------------------- B D Tarsier ====================================================================== B D Tenrec ====================================================================== B D Wallaby ====================================================================== B D Pika ====================================================================== B D Fugu ====================================================================== B D Atlantic cod ====================================================================== B D Nile tilapia ====================================================================== B D Zebrafish ====================================================================== B D X. tropicalis ====================================================================== B D Platypus ====================================================================== B D Turkey ====================================================================== B D Coelacanth ====================================================================== B D Tasmanian devil ====================================================================== B D Opossum ====================================================================== B D Lizard ====================================================================== B D Budgerigar ====================================================================== B D Zebra finch ====================================================================== B D Chicken ====================================================================== B D Painted turtle ====================================================================== B D Sloth NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN B D Rock hyrax ====================================================================== Mouse ----------------------------------------------tgcttgactga-gg--tttagcc- Rat ----------------------------------------------tgcttggccaa-gg--tttagcc- Kangaroo rat ----------------------------------------------tgtgtggctgg-gggtgtcggcc- Naked mole-rat ----------------------------------------------cgcgtagccag-gg--attggtc- Guinea pig ----------------------------------------------tgcgttgctaa-gc--gctgg-c- Squirrel ----------------------------------------------caa-------------gttgaca- Rabbit ----------------------------------------------agcctggcaag-gg---------- Human ----------------------------------------------tgtgtggctag-tg--gttggcc- Chimp ----------------------------------------------tgtgtggctag-tg--gttggcc- Gorilla ----------------------------------------------tgtgtggctag-tg--gttggcc- Orangutan ----------------------------------------------tgcgtggttag-tg--gttggcc- Gibbon ----------------------------------------------tgtgtggctag-tg--gttggcc- Rhesus ----------------------------------------------tgtgtggctag-tg--gttagcc- Baboon ----------------------------------------------tgtgtggctag-tg--gttagcc- Marmoset ----------------------------------------------tgcgtggctag-tg--gttggcc- Squirrel monkey ----------------------------------------------tgcgtggctag-tg--gttggcc- Mouse lemur ----------------------------------------------tgcgcggctta-gt--gttggccc Bushbaby ----------------------------------------------tgagtggctaaggg--gctggctg Tree shrew ----------------------------------------------tgctcgactaa-gg--gttgacc- Pig ----------------------------------------------ta---ggctat-gg--tttgacc- Alpaca ----------------------------------------------ta---ggctaa-gg--tttggcc- Dolphin ----------------------------------------------ta---ggctag-gg--ttttacc- Sheep ----------------------------------------------ta---ggctaa-tg--tttgacc- Cow ----------------------------------------------t-----gctcg-tg--tttagtc- Cat ----------------------------------------------tgtgtggctac-gg--tttggcc- Dog ----------------------------------------------tgcgtggctag-gg--tttgcct- Panda ----------------------------------------------tgcgtggctaa-ga--cttggcc- Horse ----------------------------------------------tgcgtggctaa-gc--tttggct- Little brown bat ----------------------------------------------tgcgtggctga-ca--ttgggcc- Megabat nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcactaa-gg--tttgtcc- Hedgehog ----------------------------------------------tgagctgctgg-gg--tttgggc- Shrew ----------------------------------------------caaggggctat-gg--ttt-gac- Elephant ----------------------------------------------tgcttggcgag-gg--ttcgccc- Manatee ----------------------------------------------tgcgtggcgag-gg--ttggccc- Armadillo ----------------------------------------------tgcgtggcgag-cg--acaggcc- Tarsier ====================================================================== Tenrec ====================================================================== Wallaby ====================================================================== Pika ====================================================================== Fugu ====================================================================== Atlantic cod ====================================================================== Nile tilapia ====================================================================== Zebrafish ====================================================================== X. tropicalis ====================================================================== Platypus ====================================================================== Turkey ====================================================================== Coelacanth ====================================================================== Tasmanian devil ====================================================================== Opossum ====================================================================== Lizard ====================================================================== Budgerigar ====================================================================== Zebra finch ====================================================================== Chicken ====================================================================== Painted turtle ====================================================================== Sloth NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN Rock hyrax ====================================================================== Mouse ------------cctc------------------a Rat ------------tctc------------------a Kangaroo rat ------------cggg------------------g Naked mole-rat ------------ctgc------------------g Guinea pig ------------ttgc------------------g Squirrel ------------ctgc------------------g Rabbit ----------------------------------g Human -------------ggt------------------c Chimp -------------ggt------------------c Gorilla -------------ggt------------------c Orangutan -------------ggt------------------c Gibbon -------------ggt------------------c Rhesus -------------ggt------------------c Baboon -------------ggt------------------c Marmoset -------------agt------------------c Squirrel monkey -------------ggt------------------c Mouse lemur gcgctcccagacgagc------------------c Bushbaby gcgctcccagacgagc------------------c Tree shrew ----------------------------------c Pig ------------cgccctcttcgcctcccctgcag Alpaca ------------ccgc------------------g Dolphin ------------ccgt------------------g Sheep ------------ccgc------------------g Cow ------------gctc-----------------ag Cat ------------ccgc------------------g Dog ------------ccgc------------------g Panda ------------ccgc------------------g Horse ------------ccac------------------g Little brown bat ------------ccgc------------------g Megabat ------------ccgc------------------g Hedgehog ------------ctga------------------g Shrew ------------ccga------------------g Elephant -------------tga------------------g Manatee -------------tac------------------g Armadillo -------------cac------------------g Tarsier =================================== Tenrec =================================== Wallaby =================================== Pika =================================== Fugu =================================== Atlantic cod =================================== Nile tilapia =================================== Zebrafish =================================== X. tropicalis =================================== Platypus =================================== Turkey =================================== Coelacanth =================================== Tasmanian devil =================================== Opossum =================================== Lizard =================================== Budgerigar =================================== Zebra finch =================================== Chicken =================================== Painted turtle =================================== Sloth NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN Rock hyrax =================================== Alignment block 6 of 736 in window, 56695072 - 56695084, 13 bps B D Mouse ctg----ct--ggac--------taa---------------c B D Rat cgg----gg--gcac--------taa---------------c B D Kangaroo rat ctc----cc--ctac--------tag---------------c B D Naked mole-rat ctc----ca--agac--------cgc---------------c B D Guinea pig ctc----ca--ggac--------tgg---------------c B D Squirrel ctc----ct--ggat--------gagttcagtgtgctaagtc B D Rabbit cgg----cc--gcgc--------cag-------------acc B D Human cac----ct--ggac--------tgg--------ggggtcgc B D Chimp cac----ct--ggac--------tgg--------ggggtcgc B D Gorilla cac----ct--ggac--------tgg--------ggggtcgc B D Orangutan cat----ct--ggac--------tgg--------ggggtcgc B D Gibbon cac----tt--ggac--------tgg--------ggggccgc B D Rhesus cac----ct--gtac--------cgg--------tgggccac B D Baboon cac----ct--gtac--------tgg--------ggggccac B D Marmoset cac----ctgggggg--------tgg--------ggggctgc B D Squirrel monkey cac----ctgggggg--------t-----------gggctgc B D Mouse lemur cac----tt--ggg--------------------------gc B D Bushbaby cacgg--tg--gggg--------cgg--------gggggcgc B D Tree shrew cacgatcct--agacgagcccaatgg--------agggacgc B D Pig ctc----ct--ggat--------gaa---------------c B D Alpaca ctc----ct--ggat--------gaa---------------c B D Dolphin ctc----ct--ggat--------gaa---------------c B D Sheep ttc----ct--ggat--------gaa---------------c B D Cow ttt----cg--tgtc--------cga---------------c B D Cat ctt----ct--ggat--------gac---------------c B D Dog ctc----tc--gaat--------gaa---------------c B D Panda ctc----ct--ggat--------aaa---------------c B D Horse ctc----ct--gcat--------gaa---------------c D Little brown bat ctc----ct--gggt--------gaa---------------c B D Megabat ctg----ct--ggat--------gaa---------------c B D Hedgehog ctt----ct--ggat--------gag---------------t B D Shrew tct----tt--gatt--------aaa---------------t B D Elephant ctc----cc--ggat--------gaa---------------c B D Rock hyrax cta----ct--aaag--------gaa---------------c B D Manatee ctc----cc--ggat--------gaa---------------c B D Armadillo ttc----ct--gtgt--------gaa---------------t B D Tarsier ========================================== B D Tenrec ========================================== B D Wallaby ========================================== B D Pika ========================================== B D Fugu ========================================== B D Atlantic cod ========================================== B D Nile tilapia ========================================== B D Zebrafish ========================================== B D X. tropicalis ========================================== B D Platypus ========================================== B D Turkey ========================================== B D Coelacanth ========================================== B D Tasmanian devil ========================================== B D Opossum ========================================== B D Lizard ========================================== B D Budgerigar ========================================== B D Zebra finch ========================================== B D Chicken ========================================== B D Painted turtle ========================================== B D Sloth NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN Inserts between block 6 and 7 in window B D Pig 1bp B D Dolphin 1bp B D Sheep 1bp B D Cow 1bp Alignment block 7 of 736 in window, 56695085 - 56695087, 3 bps B D Mouse --------------cac B D Rat --------------cat B D Kangaroo rat --------------cat B D Naked mole-rat --------------cac B D Guinea pig --------------cac B D Squirrel --------------agc B D Rabbit --------------cgc B D Human --------------cgc B D Chimp --------------cgc B D Gorilla --------------cgc B D Orangutan --------------cgc B D Gibbon --------------cgc B D Rhesus --------------cgc B D Baboon --------------cgc B D Marmoset --------------cgc B D Squirrel monkey --------------cac B D Mouse lemur --------------cgc B D Bushbaby --------------cgc B D Tree shrew --------------cgc B D Pig --------------c-- B D Dolphin --------------c-- B D Sheep --------------c-- B D Cow --------------c-- B D Cat --------------c-- B D Dog --------------c-- B D Panda --------------c-- B D Horse --------------c-- D Little brown bat --------------c-- B D Megabat --------------c-- B D Hedgehog --------------c-- B D Shrew --------------c-- B D Elephant ttagtggggggccgc-- B D Rock hyrax t------------gt-- B D Manatee ctactaggggaccgc-- B D Armadillo ccactggggaac-ac-- B D Tarsier ================= B D Tenrec ================= B D Wallaby ================= B D Pika ================= B D Alpaca NNNNNNNNNNNNNNNNN B D Fugu ================= B D Atlantic cod ================= B D Nile tilapia ================= B D Zebrafish ================= B D X. tropicalis ================= B D Platypus ================= B D Turkey ================= B D Coelacanth ================= B D Tasmanian devil ================= B D Opossum ================= B D Lizard ================= B D Budgerigar ================= B D Zebra finch ================= B D Chicken ================= B D Painted turtle ================= B D Sloth NNNNNNNNNNNNNNNNN Inserts between block 7 and 8 in window B D Pig 2bp B D Dolphin 75bp B D Sheep 239bp B D Cow 9bp B D Cat 23bp B D Dog 26bp B D Panda 25bp B D Horse 23bp D Little brown bat 26bp B D Megabat 24bp B D Hedgehog 3bp B D Shrew 11bp Alignment block 8 of 736 in window, 56695088 - 56695134, 47 bps B D Mouse ttcgggc--------------------------------ggg-gtacgggaag----------------- B D Rat ttcggtc--------------------------------ggg-gtacgggaag----------------- B D Kangaroo rat tgggatt--------------------------------tcg-acgtgcgaag----------------- B D Naked mole-rat tggcggtccgcgcgaagccggccacagaatagacctccgtgg-gtctcggtag----------------- B D Guinea pig tggaggtccgcgcgaagctggctatagagtggacctccttgg-gcctcagtgg----------------- B D Squirrel cgcaaga--------------------------------ggg-gcctccttgg----------------- B D Rabbit agccaga--------------------------------ggg-gtctcccggg----------------- B D Human aggaagc---------------------------------tg-gcggtaggag----------------- B D Chimp aggaagc---------------------------------tg-gcggtaggag----------------- B D Gorilla aggaagc---------------------------------tg-gcggtaggag----------------- B D Orangutan aggaagc---------------------------------tg-gcggtaggag----------------- B D Gibbon aggaagc---------------------------------tg-gtggaaggag----------------- B D Rhesus aggaagt---------------------------------tg-gcggtaggag----------------- B D Baboon aggaagt---------------------------------tg-gcggtaggag----------------- B D Marmoset gggaagc---------------------------------tg-gcggtaggag----------------- B D Squirrel monkey gggaaac---------------------------------tg-gcggtaggag----------------- B D Mouse lemur gggaagc---------------------------------cg-gctgcgggag----------------- B D Bushbaby gggaaac------------------------------ctgcg-gctgcaggac----------------- B D Tree shrew aggaagt---------------------------------cc-gattccggag----------------- B D Pig --------------------------------tagagacag--ctatgaggagtcaacgggtggggaagg B D Dolphin -------------------------------------------ttctggcttg----------------- B D Cow -------------------------------------------ctttggctag----------------- B D Cat --------------------------------tagtcacgga-gacacaagaa----------------- B D Dog --------------------------------tagtcccagg-ggcagcagag----------------- B D Panda --------------------------------tagtcccggg-ggcaggagag----------------- B D Horse --------------------------------taggtgcggg-ggcaggagag----------------- D Little brown bat --------------------------------tggtcgcggg-ggcggaggag----------------- B D Megabat --------------------------------tagtcgcggg-gatggagaag----------------- B D Hedgehog --------------------------------tagccgccggtacccgggaat----------------- B D Shrew --------------------------------tagtcgcag--aatggggaag----------------- B D Elephant -----------------------------------------------cgcggg----------------- B D Rock hyrax -----------------------------------------------cccggg----------------- B D Manatee -----------------------------------------------cgcggg----------------- B D Armadillo -----------------------------------------------cgcggg----------------- B D Tarsier ====================================================================== B D Tenrec ====================================================================== B D Wallaby ====================================================================== B D Pika ====================================================================== B D Alpaca NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN B D Sheep ====================================================================== B D Fugu ====================================================================== B D Atlantic cod ====================================================================== B D Nile tilapia ====================================================================== B D Zebrafish ====================================================================== B D X. tropicalis ====================================================================== B D Platypus ====================================================================== B D Turkey ====================================================================== B D Coelacanth ====================================================================== B D Tasmanian devil ====================================================================== B D Opossum ====================================================================== B D Lizard ====================================================================== B D Budgerigar ====================================================================== B D Zebra finch ====================================================================== B D Chicken ====================================================================== B D Painted turtle ====================================================================== B D Sloth NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN Mouse -------g----ag-----------tctct--t-----gt----ccttaca----------cctc----- Rat -------g----ag-----------tatcc--t-----gt----ccttaca----------cccc----- Kangaroo rat -------gtcctaa-----------tatcc--tcctgggc----cttaata----------tctc----- Naked mole-rat -------g----ga-----------cgccc--t---tggc----cttaaca----------tctc----- Guinea pig -------g---cgt-----------catcc--t---gggc----cttcgca----------cctc----- Squirrel -------c-cttaa-----------cacct--c---tggctcggcctcaca----------gct------ Rabbit -------c----cg-----------gaaca--a---cggc----c---gcg----------cctc----- Human -------g----aa-----------cctcc--c---tggc----cttaacagtggcccccacctg----- Chimp -------g----aa-----------cctcc--c---tggc----cttaacagtggcccccacctg----- Gorilla -------g----aa-----------cctcc--c---tggc----cttaacagtggcccccacctg----- Orangutan -------g----aa-----------cctcc--c---tggc----cttaacagtggcccccacctg----- Gibbon -------g----aa-----------cctcc--c---tggc----cttaccagtgg-ccccacctg----- Rhesus -------g----aa-----------cctcc--c---tgac----cttaacagtggcccccacctg----- Baboon -------g----aa-----------cctcc--c---tgac----cttaacagtggcccccacctg----- Marmoset -------g----ag-----------cctcc--c---tggc----cttaacagtggccctcacctg----- Squirrel monkey -------g----ag-----------cctcc--c---tggc----cttaacagtggcccccacctg----- Mouse lemur -------g----gg-----------cctcc--c---tggc----tttaacattggcccccaccgg----- Bushbaby -------c----gg-----------cctcc--c---c-ac----tttaacaacagccccccacct----- Tree shrew -------g----gg-----------cctct--c---tggc----cttaatagtggtccccacttc----- Pig gtccagtg----ttcccccca----tccccacc---ctg-----ggtaacaacggcctccatctc----- Dolphin -------g----tctcgcctaattctcctcgtc----------------------------tctc----- Cow -------g----tctccccta----ttctcatc----------------------------tctc----- Cat -------g----gg-----------tcaccacc---tggc----ggtcgcagtggcccccatctccggct Dog -------g----gg-----------tctccacc---tggc----ggtcacagtggcctccacctc----- Panda -------g----gg-----------tctccacc---tggt----ggtcacggtggcctccacctc----- Horse -------g----gg-----------tctccacc---tggc----ggtaacagtggcctccatctc----- Little brown bat -------g----ag-----------tttgcacc---tggc----ggtcagtgtggccgccacctc----- Megabat -------g----ga-----------tctccacc---tggt----ggtaacagtggcctccacctc----- Hedgehog -------g----gg-----------tctcctcc---tgac----gacaacagtggtctccacctc----- Shrew -------g----ggc----------tctctacc---tagc----tgttacaat-gcatccatcta----- Elephant -------a----ag------------------c---cgag----cgcaggag-ggcccctgcctc----- Rock hyrax -------g----gt------------------c---tga-----tggagaaa-gcctcctgcctc----- Manatee -------g----ag------------------c---ggac----cgccagaa-ggc-cctg-ttc----- Armadillo -------g----ag------------------c---cagc----cgcccaag-ggcccccacttc----- Tarsier ====================================================================== Tenrec ====================================================================== Wallaby ====================================================================== Pika ====================================================================== Alpaca NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN Sheep ====================================================================== Fugu ====================================================================== Atlantic cod ====================================================================== Nile tilapia ====================================================================== Zebrafish ====================================================================== X. tropicalis ====================================================================== Platypus ====================================================================== Turkey ====================================================================== Coelacanth ====================================================================== Tasmanian devil ====================================================================== Opossum ====================================================================== Lizard ====================================================================== Budgerigar ====================================================================== Zebra finch ====================================================================== Chicken ====================================================================== Painted turtle ====================================================================== Sloth NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN Mouse ---aagcg Rat ---aagga Kangaroo rat ---cagct Naked mole-rat ---tgtct Guinea pig ---tggcc Squirrel -------- Rabbit ---tggct Human ---tggct Chimp ---tggct Gorilla ---tggct Orangutan ---tggct Gibbon ---tggct Rhesus ---ttgct Baboon ---ttgct Marmoset ---tggct Squirrel monkey ---tggct Mouse lemur ---tggct Bushbaby ---tggct Tree shrew ---tagtt Pig ---tggct Dolphin ---cgac- Cow ---caac- Cat cggtctct Dog ---tggct Panda ---tggct Horse ---tggct Little brown bat ---tgcct Megabat ---tggct Hedgehog ---tgg-- Shrew ---tgact Elephant ---tggtt Rock hyrax ---ttgcg Manatee ---tggct Armadillo ---gggtt Tarsier ======== Tenrec ======== Wallaby ======== Pika ======== Alpaca NNNNNNNN Sheep ======== Fugu ======== Atlantic cod ======== Nile tilapia ======== Zebrafish ======== X. tropicalis ======== Platypus ======== Turkey ======== Coelacanth ======== Tasmanian devil ======== Opossum ======== Lizard ======== Budgerigar ======== Zebra finch ======== Chicken ======== Painted turtle ======== Sloth NNNNNNNN Inserts between block 8 and 9 in window B D Human 40bp B D Chimp 40bp B D Gorilla 39bp B D Orangutan 40bp B D Gibbon 40bp B D Rhesus 40bp B D Baboon 40bp B D Marmoset 40bp B D Squirrel monkey 40bp B D Mouse lemur 37bp B D Bushbaby 40bp B D Tree shrew 22bp Alignment block 9 of 736 in window, 56695135 - 56695155, 21 bps B D Mouse cctcctcc-------------------------------------------------------------- B D Rat gagtctcc-------------------------------------------------------------- B D Kangaroo rat ggacctct-cgctatctccaggtct------------tacc------------tcgtta-------c--- B D Naked mole-rat ttgcctctcctcaacctcctggtttctccgactgtcccacc------------tcccca-------c--- B D Guinea pig cggcctctgctcagcctcctggtctctcccactggcccacc------------tttcca-------t--- B D Squirrel -acccact------------ggtctctctgacccacctacc------------ttctca-------c--- B D Rabbit cggcctgcccgcaagctccaggtctccgcgaccggcctacc------------ttctca-------c--- B D Human ----------------------------------------c------------ttctca-------c--- B D Chimp ----------------------------------------c------------ttctca-------c--- B D Gorilla ----------------------------------------c------------ttctca-------c--- B D Orangutan ----------------------------------------c------------ttctca-------c--- B D Gibbon ----------------------------------------c------------ttccca-------c--- B D Rhesus ----------------------------------------c------------ttctca-------c--- B D Baboon ----------------------------------------c------------ttctca-------c--- B D Marmoset ----------------------------------------c------------ttctca-------c--- B D Squirrel monkey ----------------------------------------c------------ttctca-------c--- B D Tarsier ----------------------------------------c------------ttctca-------c--- B D Mouse lemur ----------------------------------------c------------ttccta-------c--- B D Bushbaby ----------------------------------------c------------ttctta-------c--- B D Tree shrew ----------------------------------------c------------tctcca-------atgg B D Pig --------------------------------tggctttcc------------ttattt-------c--- B D Dolphin --------------------------------gggcctacc------------ttctca-------c--- B D Cow --------------------------------gggcctacc------------ttctca-------c--- B D Cat --------------------------------c--------------------ctaaac-------c--- B D Dog --------------------------------cggtctccc------------cttaac-------c--- B D Panda --------------------------------cggtctccg------------ctaaac-------c--- B D Horse --------------------------------gggtctccc------------ctaaac-------c--- D Little brown bat --------------------------------cggcctccc------------ctaaac-------c--- B D Megabat --------------------------------ccgtctcct------------ctcaat-------c--- B D Hedgehog -----------------------------------------------------ttctat-------t--- B D Shrew --------------------------------c-tttaccc------------cccaaa-------c--- B D Elephant ---------------------------------cggactcc------------ccgtga-------c--- B D Rock hyrax ---------------------------------tggcctccgagtcgtgggctccttgagctccccc--- B D Manatee ---------------------------------cggccttc------------ccacga-------c--- B D Armadillo ---------------------------------cggcctcc----------------------------- B D Tenrec ====================================================================== B D Wallaby ====================================================================== B D Pika ====================================================================== B D Alpaca NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN B D Sheep ====================================================================== B D Fugu ====================================================================== B D Atlantic cod ====================================================================== B D Nile tilapia ====================================================================== B D Zebrafish ====================================================================== B D X. tropicalis ====================================================================== B D Platypus ====================================================================== B D Turkey ====================================================================== B D Coelacanth ====================================================================== B D Tasmanian devil ====================================================================== B D Opossum ====================================================================== B D Lizard ====================================================================== B D Budgerigar ====================================================================== B D Zebra finch ====================================================================== B D Chicken ====================================================================== B D Painted turtle ====================================================================== B D Sloth NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN Mouse actcgacttctcc Rat ---taccctttcc Kangaroo rat acctgccttcccg Naked mole-rat acctgcgcactcg Guinea pig atctgcgcgctcc Squirrel acctacgttcttg Rabbit acctgcgcgctcg Human acctgcgctctcg Chimp acctgcgctctcg Gorilla acctgcgctctcg Orangutan acctgcgctctcg Gibbon acctgcgctctcg Rhesus acctgcgctctcg Baboon acctgcgctctcg Marmoset acctgcgctctct Squirrel monkey acctgagctctcg Tarsier acctgcgctcttg Mouse lemur acctgtgctcttg Bushbaby acctgcg--cttg Tree shrew gcctactttctca Pig tcc---------- Dolphin acctg-------- Cow acctg-------- Cat tcctg-------- Dog tcctg-------- Panda tccag-------- Horse tcctc-------- Little brown bat tcctt-------- Megabat tcctt-------- Hedgehog tcctc-------- Shrew tcctc-------- Elephant ctccgcatctct- Rock hyrax ccccacatctct- Manatee ctctgcgtttct- Armadillo --ctgcgtctct- Tenrec ============= Wallaby ============= Pika ============= Alpaca NNNNNNNNNNNNN Sheep ============= Fugu ============= Atlantic cod ============= Nile tilapia ============= Zebrafish ============= X. tropicalis ============= Platypus ============= Turkey ============= Coelacanth ============= Tasmanian devil ============= Opossum ============= Lizard ============= Budgerigar ============= Zebra finch ============= Chicken ============= Painted turtle ============= Sloth NNNNNNNNNNNNN Inserts between block 9 and 10 in window B D Pig 34bp B D Dolphin 8bp B D Cow 8bp B D Cat 1bp B D Dog 1bp B D Panda 1bp B D Horse 1bp D Little brown bat 1bp B D Megabat 1bp B D Hedgehog 1bp B D Shrew 1bp Alignment block 10 of 736 in window, 56695156 - 56695159, 4 bps B D Mouse ----------------------------------ccat B D Rat ----------------------------------ccat B D Kangaroo rat ----------------------------------ccac B D Naked mole-rat ----------------------------------tcac B D Guinea pig ----------------------------------tcac B D Squirrel ----------------------------------ccac B D Rabbit ----------------------------------cagc B D Human ----------------------------------ccac B D Chimp ----------------------------------ccac B D Gorilla ----------------------------------ccac B D Orangutan ----------------------------------ccac B D Gibbon ----------------------------------ccac B D Rhesus ----------------------------------ccac B D Baboon ----------------------------------ccac B D Marmoset ----------------------------------ccac B D Squirrel monkey ----------------------------------ccac B D Tarsier ----------------------------------ccac B D Mouse lemur ----------------------------------ccac B D Bushbaby ----------------------------------tcac B D Tree shrew -----------------------------------cac B D Pig ----------------------------------cccg B D Dolphin ----------------------------------ccac B D Cow ----------------------------------tctc B D Cat ----------------------------------tctt B D Dog ----------------------------------tctc B D Panda ----------------------------------tctc B D Horse ----------------------------------tccc B D Megabat ----------------------------------tctc B D Hedgehog ----------------------------------tctg B D Shrew ----------------------------------cctc B D Elephant ccagtgggcctacctgtttacacctgcgctctcaccac B D Rock hyrax ccaataggcctacctttgtccacctgcgctgttgccac B D Manatee cctatgggcctaccttcttacacctgcgctctcgccac B D Armadillo ccaa----------------------------cacctc B D Tenrec ====================================== B D Wallaby ====================================== B D Pika ====================================== B D Alpaca NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN B D Sheep ====================================== B D Fugu ====================================== B D Atlantic cod ====================================== B D Nile tilapia ====================================== B D Zebrafish ====================================== B D X. tropicalis ====================================== B D Platypus ====================================== B D Turkey ====================================== B D Coelacanth ====================================== B D Tasmanian devil ====================================== B D Opossum ====================================== B D Lizard ====================================== B D Budgerigar ====================================== B D Zebra finch ====================================== B D Chicken ====================================== B D Painted turtle ====================================== D Little brown bat ====================================== B D Sloth NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN Inserts between block 10 and 11 in window B D Shrew 32bp Alignment block 11 of 736 in window, 56695160 - 56695171, 12 bps B D Mouse cctga-----gtgaact B D Rat ccttt-----gtgaact B D Kangaroo rat ccaga------cagact B D Naked mole-rat ctgta-----gtagact B D Guinea pig ttgga-----gtagact B D Squirrel ctgga-----gtagtct B D Rabbit ctaac-----gcgccct B D Human ctggc-----atggact B D Chimp ctggc-----atggact B D Gorilla ctggc-----atggact B D Orangutan ctggc-----atggacc B D Gibbon ctggc-----atggact B D Rhesus ctggc-----atggact B D Baboon ctggc-----atggact B D Marmoset ctggc-----atggatt B D Squirrel monkey ctggc-----atggatt B D Tarsier ctgga-----gtggacc B D Mouse lemur cagcc-----atggact B D Bushbaby cagcc------cggatt B D Tree shrew ctg--------tggact B D Pig ctggccaccagtaagct B D Dolphin ctggc-----gtaggct B D Cow tcggc-----gtaggat B D Cat tccga------ggggcc B D Dog tcgga------tcggcc B D Panda tccta------tcggcc B D Horse tccga-----gggggcc B D Megabat ttcga------tgggcc B D Hedgehog gaaga------aaggcc B D Elephant ctggc-----gtggact B D Rock hyrax ctggc-----gtggacc B D Manatee ctcgc-----gtggact B D Armadillo ctggt-----gtggcct B D Painted turtle cttga-----atgaact B D Tenrec ================= B D Wallaby ================= B D Pika ================= B D Alpaca NNNNNNNNNNNNNNNNN B D Sheep ================= B D Fugu ================= B D Atlantic cod ================= B D Nile tilapia ================= B D Zebrafish ================= B D X. tropicalis ================= B D Platypus ================= B D Turkey ================= B D Coelacanth ================= B D Tasmanian devil ================= B D Opossum ================= B D Lizard ================= B D Budgerigar ================= B D Zebra finch ================= B D Chicken ================= B D Shrew ================= D Little brown bat ================= B D Sloth NNNNNNNNNNNNNNNNN Inserts between block 11 and 12 in window B D Cat 40bp B D Dog 38bp B D Panda 40bp B D Horse 39bp B D Megabat 69bp B D Hedgehog 35bp Alignment block 12 of 736 in window, 56695172 - 56695233, 62 bps B D Mouse ggaagg----aga---tagaatttgtggac----a---aga---------ttct-----gacag-tcc-- B D Rat gaaagg----agg---tagaatttgtggac----a---aga---------ttct-----gacag-tcc-- B D Kangaroo rat ggaacc----aga---cagactcaatgggt----a---agaga-gcccccttcc-----tacca-ccccc B D Naked mole-rat gaaaag----------tggaatcagtgggt----a---acagaggtcccctcct-----gacgc-ctc-- B D Guinea pig gaaaag--------------------aagt----a---actgaggtccccactt-----gacgc-ctc-- B D Squirrel ggaatg----agg---tggaatcggtgggt----a---acagaacttccctcct-----gacag-ccc-- B D Rabbit gaaggg----agg---tggaaccagcgggt----gaccagagagccccgctcct-----gacag-ccc-- B D Human gaagtg----agg---tagaatcggcaggt----g---acacagatcctctcct-----gacag-tcc-- B D Chimp gaagtg----agg---tagaatcggcaggt----g---acacagatcctctcct-----gacag-tcc-- B D Gorilla gaagtg----agg---tagaatcggcaggt----g---acacagatcctctcct-----gacag-tcc-- B D Orangutan caagtg----agg---tagaatcggcaggt----g---acacagatcctctcct-----gacag-tcc-- B D Gibbon gaagtg----agg---tagaatcggcaggt----g---atacagatcctctcct-----gacag-tcc-- B D Rhesus gaagtg----agg---tagaatcggcaggt----g---acacagatcatctcct-----gacag-tcc-- B D Baboon gaagtg----agg---tagaatcggcaggt----g---acacagatcatctcct-----gacag-tcc-- B D Marmoset gaagtt----agg---tagaatcggcaggt----g---acacagattctct------------------- B D Squirrel monkey gaagtt----agg---tagcatcggcaggt----a---acacagattctct------------------- B D Tarsier gaagag----agg---tagaatgggcgggt----g---acagagatcccctcct-----gatag-tcc-- B D Mouse lemur gacttg----agg---tagagtgggcgggt----g---acggag---ctctcct-----cgagg-ccc-- B D Bushbaby gacgcgacgtaga---tagaatcttcgggc----g---accaag---ctctctt-----ggcgg-ctg-- B D Tree shrew gaagtg----agg---tggaatcggctggt----g---acaaagaa-ctctcct-----gacag-aac-- B D Pig ggagtg----tgg---tagtgtccgctggt----g---acagccaccttctcct-----gacag-cct-- B D Dolphin ggagcg----cgg---taggacccgccggt----a---acagccatcctctcct-----gatat-ccc-- B D Sheep ------------------------------------------ccatcctctctt-----gacaa-cct-- B D Cow gtagtg----ctg---taagatccgctggt----a---acagacatcctctctt-----gacaa-cct-- B D Cat ggagtg----agg---tagcccctgccggt----a---atag-gttcttctcca-----gacag-ccc-- B D Dog ggagtg----agg---tatcatcctcctgt----a---atagcgtccatctccg-----gacag-ccc-- B D Panda ggagtg----aggagataagattctccggt----a---atagcgtccttcttca-----gacag-ccc-- B D Horse ggagtg----agg---taggatgggccggc----a---acaacattcctctcct-----tgcagcccc-- D Little brown bat ---------------------------------------------------------------------- B D Hedgehog ggagtg----aag---tggcataggtgggt----g---actgcgtggttcacct-----gccag-tcc-- B D Shrew ggacag----agg---tagtacagtagcac----t---gtagcactgctttccc-----gacag-tcc-- B D Elephant ggcatg----ggg---taggatcggccggt----g---atagcgctcccctcct-----gacag-cct-- B D Rock hyrax ggcgtg----ggg---caggaccagctggt----g---acagcgttcccctcct-----gacag-ccc-- B D Manatee ggagtg----gga---taggattggccggt----g---ac-gcgctgccttcct-----gccag-cct-- B D Armadillo ggagtg----ggg---cagggtcggtaggt----g---ccagcgctcccctcct-----ggcag-ccc-- B D Painted turtle aaaagg----cag---gcgtatctacaaactttga---acagattgctttctctaaagcgatat-gac-- B D Tenrec ====================================================================== B D Wallaby ====================================================================== B D Pika ====================================================================== B D Alpaca NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN B D Fugu ====================================================================== B D Atlantic cod ====================================================================== B D Nile tilapia ====================================================================== B D Zebrafish ====================================================================== B D X. tropicalis ====================================================================== B D Platypus ====================================================================== B D Turkey ====================================================================== B D Coelacanth ====================================================================== B D Tasmanian devil ====================================================================== B D Opossum ====================================================================== B D Lizard ====================================================================== B D Budgerigar ====================================================================== B D Zebra finch ====================================================================== B D Chicken ====================================================================== B D Sloth NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN B D Megabat ====================================================================== Mouse ---cc-aaaggtcagcatgacaggt----ag Rat ---cc-aaaggtcagcatgccagat----ag Kangaroo rat ccacc-caaggccgaccagacaggt----ag Naked mole-rat ---cc-gaaggcccacagggcaggt----ta Guinea pig ---ct-gaaggcccacagggcaggt----ta Squirrel ---cc-aaagtcctgcatggtcggt----ta Rabbit ---tt-ggaggcctgcgggaccggc----ca Human ---cc-agaggcccgcatgacagat----tt Chimp ---cc-agaggcccgcatgacagat----tt Gorilla ---cc-agaggcccgcatgacagat----tt Orangutan ---cc-agaggcccgcatgacagat----tt Gibbon ---cc-agaggcccgcatgacagat----tt Rhesus ---cc-agaggcccgcatgacagat----tt Baboon ---cc-agaggcccgcatgacagat----tt Marmoset ---cc-ggtggccctctcgacagat----tt Squirrel monkey ---cc-ggtggccctctcgacagat----tt Tarsier ---cc-ggaggcctgcctggcaggt----aa Mouse lemur ---gc-cgaggcccgcatgacagat----ta Bushbaby ---gc-ggaggcctgcacgacagat----ta Tree shrew ---cc--gaggcctgcaggtcaggg----ta Pig ---ag-cgaggcttgcacggcaggctattta Dolphin ---ct-cgaggcttacaggacaggc----ta Sheep ---ct-tgaagcttgcatgacaggc----ta Cow ---ct-tgaagcttgcctgacaggc----ta Cat ---ct-ggaggcccgcatgacgggc----aa Dog ---ca-ggaggcccgcaggaccggc----ta Panda ---ct-ggaggcctacgtgtccggc----ta Horse ---cc-ggagccctgcaggacagac----ta Little brown bat -----------tctctacgacgggc----ct Hedgehog ---ct-ggagaccttcatgatgagt----ta Shrew ---at-ggaggcctcagtgatacat----ta Elephant ---cttggaagctcgtatgacaggg----tg Rock hyrax ---ctctgaggcctgtgtgacaggc----ta Manatee ---cttggaggattgcatgacaggc----ta Armadillo ---tttcgaggcttgcataata-at----ta Painted turtle ---ca-aaatattggcgccg----------- Tenrec =============================== Wallaby =============================== Pika =============================== Alpaca NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN Fugu =============================== Atlantic cod =============================== Nile tilapia =============================== Zebrafish =============================== X. tropicalis =============================== Platypus =============================== Turkey =============================== Coelacanth =============================== Tasmanian devil =============================== Opossum =============================== Lizard =============================== Budgerigar =============================== Zebra finch =============================== Chicken =============================== Sloth NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN Megabat =============================== Alignment block 13 of 736 in window, 56695234 - 56695270, 37 bps B D Mouse ttc----------------tcagtca-----------tcc-----------------c------------ B D Rat ttc----------------tcagtca-----------tcctcatgcccaggagctccc------------ B D Kangaroo rat tgcaatttcgacgactccttcattca-----------tct-----------------c------------ B D Naked mole-rat tga---ttc----------taagata-----------ccc-----------------c------------ B D Guinea pig tta---tt-----------taaaata-----------ccc-----------------c------------ B D Squirrel ttc----------------taagact-----------ccc-----------------c------------ B D Rabbit ttc----------------tgagacg-----------ccc-----------------c------------ B D Human tgc----------------taagacaact--------ccc-----------------t------------ B D Chimp tgc----------------taagacaact--------ccc-----------------t------------ B D Gorilla tgc----------------taagacaact--------ccc-----------------t------------ B D Orangutan tgc----------------taagacaact--------ccc-----------------t------------ B D Gibbon tgc----------------taagacaact--------ccc-----------------t------------ B D Rhesus tgc----------------taagacaact--------ccc-----------------t------------ B D Baboon tgc----------------taagacaact--------ccc-----------------t------------ B D Marmoset tgc----------------taagacaact--------cc------------------c------------ B D Squirrel monkey tgc----------------taaggcaact--------cct-----------------c------------ B D Tarsier tgc----------------taagacagcc--------tcc-----------------t--ctggccc--- B D Mouse lemur cgc----------------caagac--ctccccggcccct-----------------a------------ B D Bushbaby tgc----------------taagac--ct--------cgt-----------------g------------ B D Tree shrew ttc----------------taag--cacc--------tct-----------------c------------ B D Pig ttc----------------taagaaccct--------ca------------------c------------ B D Dolphin ttc----------------taagaacgct--------caccatca------------c------------ B D Sheep ttc----------------taagaaccct--------caccatgg------------c------------ B D Cow ttc----------------taagaaccct--------caccatgg------------c------------ B D Cat ttc----------------taagaaccac--------tgcc----------------c------------ B D Dog ttc----------------taagaatacc--------cccc----------------cccccgacacaca B D Panda ttc----------------taagaagcac--------cccc----------------c------------ B D Horse ttc----------------taagaagccc--------cctt----------------c------------ D Little brown bat atc----------------t-----------------tccc----------------g------------ B D Hedgehog ttt----------------taacacacac--------acac----------------a--cacacacaca B D Shrew ---------------------------------------------------------------------a B D Elephant tcc----------------taagaccagt--------atc-----------------t------------ B D Rock hyrax ttc----------------taaaa---------------------------------------------- B D Manatee ttc----------------taagatccgt--------ctt-----------------g------------ B D Armadillo ttc----------------taagacccct--------ttc-----------------c------------ B D Platypus ---------------------------------------------------------------------- B D Painted turtle ---------------------------------------------------------------------- B D Tenrec ====================================================================== B D Wallaby ====================================================================== B D Pika ====================================================================== B D Alpaca NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN B D Fugu ====================================================================== B D Atlantic cod ====================================================================== B D Nile tilapia ====================================================================== B D Zebrafish ====================================================================== B D X. tropicalis ====================================================================== B D Turkey ====================================================================== B D Coelacanth ====================================================================== B D Tasmanian devil ====================================================================== B D Opossum ====================================================================== B D Lizard ====================================================================== B D Budgerigar ====================================================================== B D Zebra finch ====================================================================== B D Chicken ====================================================================== B D Sloth NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN B D Megabat ====================================================================== Mouse --tt----------------------------------------aagggtcg-t--------------gc Rat --tt----------------------------------------gatggtcg-t--------------gc Kangaroo rat --tttcc-----agcccc-------------------gt--a-aaatggtgg-c--------------ac Naked mole-rat --ca-----------cct-------------------gt--gtaaccggtgg-c--------------gc Guinea pig --ca-----------cct-------------------at--gtatactgcgg-c--------------gc Squirrel --ca-----------tcc-------------------tt--gtaaacagtgc-t--------------gc Rabbit --ca-----------gcc-------------------ca--gtcaacggcgg-c--------------gc Human --ca-----------ccc-------------------ct--gtgcacggtgg-c--------------gc Chimp --ca-----------ccc-------------------ct--gtgcacggtgg-c--------------gc Gorilla --ca-----------ccc-------------------ct--gtgcacggtgg-c--------------gc Orangutan --ca-----------ccc-------------------ct--gtgcacggtgg-c--------------gc Gibbon --cg-----------ccc-------------------ct--gtgcacggtgg-c--------------gc Rhesus --ca-----------ccc-------------------ct--gtgcacggtgg-c--------------g- Baboon --ca-----------ccc-------------------ct--gtgcacggtgg-c--------------g- Marmoset --ca-----------ccc-------------------cc--gtgcaccgtgg-c--------------gc Squirrel monkey --ca-----------ccc-------------------cc--gtgcaccgtgg-c--------------gc Tarsier --ca-----------tct-------------------cc--gtgaacggtgg-c--------------gc Mouse lemur --ct-----------ccc-------------------cc--acaaacggtgg-c--------------gc Bushbaby --tc-----------ccc-------------------ca--gtagacggtgg-c--------------tc Tree shrew --ca-----------ccc-------------------ccaggtaaacagcgg-c--------------ac Pig --ca-----------cca-------------------cc--aatgacggtgg-c--------------gc Dolphin --ca-----------cca-------------------tc--aaagacggtgg-c--------------gc Sheep --ca-----------cca-------------------tc--aaagacggtgg-c--------------gc Cow --ca-----------cca-------------------tc--aaagacggtgg-c--------------gc Cat --ct-----------cgt--------------------------aacggtggcc--------------cc Dog caca-----------cct--------------------------gacggtgg-c--------------cc Panda --ca-----------cct--------------------------gacggtgg-c--------------cc Horse --ca------------at--------------------------gacggtgg-c--------------gc Little brown bat --ca-----------ccc--------------------------g-cgctg--t--------------cg Hedgehog caca-----------ctcacacgcgccacgaccaccccc--gaagacggtgg-t--------------at Shrew gaca-----------ctt-------cgacttccatctgc--aaggacagtgg-c--------------gg Elephant --ta-----------acc-------------------gg---------ttgg-c--------------gc Rock hyrax ---g-----------aca-------------------ga---------ttgg-a--------------gc Manatee --ta-----------acc-------------------cg---------tagg-c--------------gc Armadillo --ta-----------aat-------------------gg----------agg-c--------------gc Platypus ----tcctcggtgttccc-------------------ca--aagagccgggg-c--------------cc Painted turtle ------------------------------------------ttgacaatag-cctagtaaaagtattac Tenrec ====================================================================== Wallaby ====================================================================== Pika ====================================================================== Alpaca NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN Fugu ====================================================================== Atlantic cod ====================================================================== Nile tilapia ====================================================================== Zebrafish ====================================================================== X. tropicalis ====================================================================== Turkey ====================================================================== Coelacanth ====================================================================== Tasmanian devil ====================================================================== Opossum ====================================================================== Lizard ====================================================================== Budgerigar ====================================================================== Zebra finch ====================================================================== Chicken ====================================================================== Sloth NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN Megabat ====================================================================== Mouse c-act-tgttct Rat ccgct-ggctac Kangaroo rat a-ccc-acctcc Naked mole-rat c---c-tcctcc Guinea pig c---c-ccct-c Squirrel g------cttcc Rabbit c------cctgc Human c---c-gcctcc Chimp c---c-gcctcc Gorilla c---c-gcctcc Orangutan c---c-gcctcc Gibbon c---c-gcctcc Rhesus c---c-gcctcc Baboon c---c-gcctcc Marmoset c---c-gcctcc Squirrel monkey c---c-gcctcc Tarsier c---c-gcctcc Mouse lemur c---c-gcctcc Bushbaby c---c-gcctcc Tree shrew t---taaattcc Pig t---c-accttc Dolphin t---c-acctcc Sheep t---c-acctcc Cow t---c-acctcc Cat c---c-acctcc Dog c---c-acctct Panda c---c-accacc Horse c---c-acctcc Little brown bat c---c-acct-- Hedgehog c---c-accttc Shrew t---c-atttct Elephant c---c-acctcc Rock hyrax c---c-acctcc Manatee c---c-acctcc Armadillo c---t-gcctcc Platypus t---g-gcaat- Painted turtle c---a-acc--- Tenrec ============ Wallaby ============ Pika ============ Alpaca NNNNNNNNNNNN Fugu ============ Atlantic cod ============ Nile tilapia ============ Zebrafish ============ X. tropicalis ============ Turkey ============ Coelacanth ============ Tasmanian devil ============ Opossum ============ Lizard ============ Budgerigar ============ Zebra finch ============ Chicken ============ Sloth NNNNNNNNNNNN Megabat ============ Inserts between block 13 and 14 in window B D Platypus 7bp Alignment block 14 of 736 in window, 56695271 - 56695291, 21 bps B D Mouse ctgagagctc---taacc--------tccaac B D Rat cttagagccc---taacc--------tgtaat B D Kangaroo rat c-----gccc---cgagt--------ctcaac B D Naked mole-rat c-----actc---agaat--------cgtagc B D Guinea pig c-----accc---ataat--------ttaagc B D Squirrel c-----acct---agagt--------cttaac B D Rabbit c-----acct---ggagc--------cctaac B D Human c-----acct---atagc--------cttaac B D Chimp c-----acct---atagc--------cttaac B D Gorilla c-----acct---atagt--------cttaac B D Orangutan c-----acct---atagt--------cttaac B D Gibbon c-----acct---acagt--------cttaac B D Rhesus c-----acct---atagt--------cttaac B D Baboon c-----acct---atagt--------cttaac B D Marmoset c-----actt---agggt--------tttaac B D Squirrel monkey c-----actt---agggt--------cttaac B D Tarsier c-----acct---agagt--------cttaac B D Mouse lemur c-----actt---agatt--------cttaac B D Bushbaby c-----accc---agatt--------cttaac B D Tree shrew c-----atct---agagt--------cttaat B D Pig c-----atct---agagt--------tttaac B D Dolphin a-----gc-----agaac--------tcaagc B D Sheep c-----acct---agagt--------tttaac B D Cow c-----acct---agagt--------tttaac B D Cat c-----acct---ggagt--------tttaac B D Dog c-----acct---agagt--------tctacc B D Panda c-----ccct---agagt--------tttaac B D Horse c-----accc---agagt--------tttaac D Little brown bat g-----gctt---ggggt--------ggcaac B D Hedgehog c-----acttacaagagt--------tttaac B D Shrew c-----acct---agagc--------tttaac B D Elephant c-----acct---agatt--------cttaac B D Rock hyrax t-----acct---ggagt--------cttaac B D Manatee c-----acct---agagt--------cttaac B D Armadillo c-----gtct---ggagt-------------- B D Tasmanian devil -------ctg---ataat--------gctaac B D Platypus c-----gccc---------------------- B D Painted turtle -------ctg---aaagtatgtaaacttgaac B D Tenrec ================================ B D Wallaby ================================ B D Pika ================================ B D Alpaca NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN B D Fugu ================================ B D Atlantic cod ================================ B D Nile tilapia ================================ B D Zebrafish ================================ B D X. tropicalis ================================ B D Turkey ================================ B D Coelacanth ================================ B D Opossum ================================ B D Lizard ================================ B D Budgerigar ================================ B D Zebra finch ================================ B D Chicken ================================ B D Sloth NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN B D Megabat ================================ Inserts between block 14 and 15 in window B D Tasmanian devil 10bp B D Platypus 1bp Alignment block 15 of 736 in window, 56695292 - 56695296, 5 bps B D Mouse tttaa B D Rat ttcat B D Kangaroo rat ttcaa B D Naked mole-rat ttcat B D Guinea pig atcat B D Squirrel ttcca B D Rabbit tccgc B D Human ttcaa B D Chimp ttcaa B D Gorilla ttcaa B D Orangutan ttcaa B D Gibbon ttcaa B D Rhesus ttcaa B D Baboon ttcaa B D Marmoset ttcaa B D Squirrel monkey ttcaa B D Tarsier ttcac B D Mouse lemur ttcaa B D Bushbaby tttaa B D Tree shrew ttgaa B D Pig ttaaa B D Dolphin ctctt B D Sheep ttaaa B D Cow ttaaa B D Cat ttcaa B D Dog ttcag B D Panda ttcaa B D Horse ttcag D Little brown bat acctg B D Hedgehog ttcta B D Shrew ttcaa B D Elephant ttcaa B D Rock hyrax ctcaa B D Manatee ttcaa B D Opossum tttga B D Tasmanian devil tttga B D Platypus ttca- B D Painted turtle -t--- B D Tenrec ===== B D Wallaby ===== B D Pika ===== B D Alpaca NNNNN B D Fugu ===== B D Atlantic cod ===== B D Nile tilapia ===== B D Zebrafish ===== B D X. tropicalis ===== B D Turkey ===== B D Coelacanth ===== B D Lizard ===== B D Budgerigar ===== B D Zebra finch ===== B D Chicken ===== B D Sloth NNNNN B D Armadillo ----- B D Megabat ===== Inserts between block 15 and 16 in window B D Pig 1bp B D Dolphin 1bp B D Sheep 1bp B D Cow 1bp B D Cat 6bp B D Dog 6bp B D Panda 6bp B D Horse 6bp D Little brown bat 8bp B D Hedgehog 6bp B D Shrew 6bp B D Elephant 2bp B D Rock hyrax 2bp B D Manatee 2bp Alignment block 16 of 736 in window, 56695297 - 56695337, 41 bps B D Mouse -----ttt-ga----caaa---------------ttcatctcttcc------------ccaaaag---gt B D Rat -----ttttga----caag---------------tccatctcttcc------------ccaagag---gt B D Kangaroo rat -----ttc-------tgag---------------ttcgtccctacc------------cc---------- B D Naked mole-rat -----ttctta----gagg---------------tccatcgttccc------------ccaaaag---ag B D Guinea pig -----taatta----gata---------------gccct-atttct------------tcgcaag---aa B D Squirrel -----ttctga----ggtg---------------ttcaacgttccc------------acctagg---gg B D Rabbit -----ttctga----gggg---------------tcggtcgttccc------------tcaaaga---gg B D Human -----ttctga----gatg---------------tccatcgttccc------------cggag-g---ag B D Chimp -----ttctga----gatg---------------tccatcgttccc------------cggag-g---ag B D Gorilla -----ttctga----gatg---------------tccatcgttccc------------cggag-g---ag B D Orangutan -----ttctga----gacg---------------tccatcgttccc------------cggag-g---ag B D Gibbon -----ttctga----gaag---------------tctatcgttccc------------cggag-g---ag B D Rhesus -----ttctga----gacg---------------tccatcgttccc------------tagag-g---ag B D Baboon -----ttctga----gacg---------------tccatcgttccc------------tagag-g---ag B D Marmoset -----ttctga----gacg---------------tccatcgttccc------------ctgag-g---ag B D Squirrel monkey -----ttctga----gaag---------------tccatctttccc------------ccgag-g---aa B D Tarsier -----ttttga----gatg---------------tccatcgttctt------------ccaag-g---ag B D Mouse lemur -----ttccga----gat----------------gccatcgttccc------------ccaaatg---ag B D Bushbaby -----agttga----gacg---------------gccgtccttccc------------ccaag-g---ag B D Tree shrew -----ttctga----ga----------------------cgttcct------------ccaaa-g---ag B D Pig ------tctga----gatg---------------tctgtatttcac------------ccaaa-g---aa B D Dolphin ------catcg----gggc---------------acagacttcctt------------tta--------- B D Sheep ------tctga----gatg---------------tctgccttcccc------------tcaaa-t---aa B D Cow ------tctga----gatg---------------tctgccttcccc------------ccaga-g---aa B D Cat ---------------ggca---------------tctgtccctcct-----------cccctc-ctagaa B D Dog ---------------ggcg---------------tctgttcccccc-----------tcccgc-c---aa B D Panda ---------------cgcg---------------tctgtttccccc------------ctctc-c---aa B D Horse ---------------gatg---------------tccgttcctccccccccaccccccccccc-ccataa D Little brown bat ------tctaa----gacg---------------tttgtctgtccc------------ccaaa-g---aa B D Megabat ------tctga----gacg---------------tccatctgtctc------------ccgaa-t---aa B D Hedgehog ---------------gacg----------------ctgtctttagc----------tccccca-a---at B D Shrew ---------------ggcg---------------tctgtcagtccc----------tctttct-c---cg B D Elephant -------ctga----gacg---------------tctgtcatctcc------------gtaaa-a---gg B D Rock hyrax -------ctga----ga-------------------tgtcatatcc------------ctaaa-g---ag B D Manatee -------ctga----gacg---------------tccgtcatttcc------------cca--------- B D Armadillo ----------g----ga---------------------tggaaccc------------tcaaa-g---ag B D Opossum ------cccaa----cata---------------attgtttccttc------------tcttc-c---tt B D Tasmanian devil ------cccaa----cgta---------------atcgttcccttc------------tcttc-c---cg B D Platypus ------tctcaacccgatc---------------tctttcccctca------------tcc--------- B D Painted turtle aatagatctca----tacacaggtagagacaggatcaattg----------------------------- B D Tenrec ====================================================================== B D Wallaby ====================================================================== B D Pika ====================================================================== B D Alpaca NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN B D Fugu ====================================================================== B D Atlantic cod ====================================================================== B D Nile tilapia ====================================================================== B D Zebrafish ====================================================================== B D X. tropicalis ====================================================================== B D Turkey ====================================================================== B D Coelacanth ====================================================================== B D Lizard ====================================================================== B D Budgerigar ====================================================================== B D Zebra finch ====================================================================== B D Chicken ====================================================================== B D Sloth NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN Mouse ------gt----------cctcgg-tct Rat ------gt----------cctcgg-tct Kangaroo rat ------------------cct------t Naked mole-rat ------gt-------ctccctctg-tcc Guinea pig ------gt---ct-cctccctcag-ccc Squirrel ------gt---ct-----cctcgg-tct Rabbit ------aa---ccgggtctttggg-ccc Human ------gt---ct-----cctcgggccc Chimp ------gt---ct-----cctcgggccc Gorilla ------gt---ct-----cctcgggccc Orangutan ------gt---ct------ctcgggccc Gibbon ------gt---ct-----cctcgggccc Rhesus ------gt---ct-----cctagggccc Baboon ------gt---ct-----cctagggccc Marmoset ------gt---ct-----cctcgggtcc Squirrel monkey ------gt---ct-----cctcggctcc Tarsier ------gt---ct-----cctcgg-ccc Mouse lemur ------gt---ct-----cctcg--acc Bushbaby aagtccat---ct-----ccttc--ccc Tree shrew ------gt---ct-----tctcag--cc Pig ------gt---ct-----tctcag-tcc Dolphin ------------c-----tccttc-ccc Sheep ------ct---tt-----tctcgg-ccc Cow ------gc---ct-----tctcgg-ccc Cat ------gt---ct-----cttcaa-ccc Dog ------gt---tt-----cctcaa-ctc Panda ------gt---ct-----cctcaa-cgc Horse ------gt---ct-----cctcggtccc Little brown bat ------gt---ct-----cct----agc Megabat ------gt---ct-----cat----ccc Hedgehog ------at---ct-----cttcag-ccc Shrew ------tt---cc-----ccttcg-ccc Elephant ------gt---ct-----cctagt-ccc Rock hyrax ------gt---cc-----ccgagt-ccc Manatee ------gt---at-----cctcgg-ccc Armadillo ------ct---ct-----cctcgg-ccc Opossum ------gttccct--------------- Tasmanian devil ------gt---ct--------------- Platypus ---------------------------- Painted turtle ---------------------------- Tenrec ============================ Wallaby ============================ Pika ============================ Alpaca NNNNNNNNNNNNNNNNNNNNNNNNNNNN Fugu ============================ Atlantic cod ============================ Nile tilapia ============================ Zebrafish ============================ X. tropicalis ============================ Turkey ============================ Coelacanth ============================ Lizard ============================ Budgerigar ============================ Zebra finch ============================ Chicken ============================ Sloth NNNNNNNNNNNNNNNNNNNNNNNNNNNN Alignment block 17 of 736 in window, 56695338 - 56695352, 15 bps B D Mouse c---------------tacccacttaaagt B D Rat c---------------tacccacttaaagt B D Kangaroo rat c---------------gagtcac------t B D Naked mole-rat c---------------tatccccttcgagc B D Guinea pig c---------------taccctctttgagt B D Squirrel c---------------tatcccctcctagt B D Rabbit c---------------gtcccgtttggagt B D Human c---------------ttctcccttcgagt B D Chimp c---------------ttcccccttcgagt B D Gorilla c---------------ttctcccttcgagt B D Orangutan c---------------ttctcccttcgagt B D Gibbon c---------------ttctcccttcgagt B D Rhesus c---------------ttctcccttcgagt B D Baboon c---------------ttctcccttcgagt B D Marmoset c---------------ttctcccttcgaat B D Squirrel monkey c---------------gtatcccttcgaat B D Tarsier c---------------ttccccctccgagt B D Mouse lemur c---------------cttccccttcgagt B D Bushbaby c---------------tttcctcttcgagt B D Tree shrew c---------------cttccccctcgagt B D Pig c---------------ttcccctttggagt B D Dolphin c---------------ttctcccttcgagt B D Sheep c---------------ttctcccttcgagt B D Cow c---------------ttctcccttcaagt B D Cat c---------------ttctcccttcgagt B D Dog c---------------ttcctcctt--agt B D Panda c---------------ttcccccttaaagt B D Horse c---------------ttcccccttcgagt D Little brown bat t---------------ccctccctttttga B D Megabat c---------------tcccctcttccagt B D Hedgehog c--------------atccctctccacagt B D Shrew tccaaatctcaggaggtttctctttagtgt B D Elephant c---------------ttcccctctggagt B D Rock hyrax c---------------ttcccccttcgagt B D Tenrec c---------------ttccccctcggagt B D Manatee c---------------ttcccccttcgagt B D Armadillo c---------------ttttccctttgagt B D Opossum -----------------ttccccataatct B D Tasmanian devil -----------------ctttccataatct B D Platypus c---------------taaccgcccacaga B D Painted turtle ---------------atgtttctacaaaat B D Wallaby ============================== B D Pika ============================== B D Alpaca NNNNNNNNNNNNNNNNNNNNNNNNNNNNNN B D Fugu ============================== B D Atlantic cod ============================== B D Nile tilapia ============================== B D Zebrafish ============================== B D X. tropicalis ============================== B D Turkey ============================== B D Coelacanth ============================== B D Lizard ============================== B D Budgerigar ============================== B D Zebra finch ============================== B D Chicken ============================== B D Sloth NNNNNNNNNNNNNNNNNNNNNNNNNNNNNN Inserts between block 17 and 18 in window B D Opossum 1bp B D Tasmanian devil 1bp Alignment block 18 of 736 in window, 56695353 - 56695368, 16 bps B D Mouse ----tattcaaaccgagacc B D Rat ----cattcaaaccaagacc B D Kangaroo rat ----cattcagatcgag--- B D Naked mole-rat ----cactcatattccggtc B D Guinea pig ----tactcatattcagacc B D Squirrel ----cattcatattcagacc B D Rabbit ----cactcgcattggggcc B D Pika ----tgctcgcactcagacc B D Human ----cattcacattcagacc B D Chimp ----cattcatatgcagacc B D Gorilla ----cattcatattcagact B D Orangutan ----cattcatattcagacc B D Gibbon ----cattcatattcagacc B D Rhesus ----cattcatattcagaac B D Baboon ----cattcatattcagacc B D Marmoset ----cattcatactcagata B D Squirrel monkey ----cattcatactcagaca B D Tarsier ----cactcatatccaaacc B D Mouse lemur ----cactcatattcagagc B D Bushbaby ----cacccatattcagact B D Tree shrew --------------cagacc B D Pig ----ctctcaaattcagacc B D Dolphin ----ctttcatattcagacc B D Sheep ----ctctcgtattcagacc B D Cow ----ctctcgtattcagacc B D Cat ----ctctcaaattcagacc B D Dog ----ctctc-tattcagact B D Panda ----ctctcatattcagacc B D Horse ----atctcataagcggacc D Little brown bat ----gtctcatattgggacc B D Megabat ----ttctcatactgagacc B D Hedgehog ----ctctcaaatttggatc B D Shrew ----ctctcatattcggacc B D Elephant ----cagtcatattcggacc B D Rock hyrax ----cagtc--attcagccc B D Tenrec ----cactc----tcagact B D Manatee ----cactcatattcggacc B D Armadillo ----cactcttactcggacc B D Opossum ----gtttaat--------- B D Tasmanian devil ----ggttaatgtttaatt- B D Platypus -------------taggatt B D Painted turtle aatgccttactac------- B D Wallaby ==================== B D Alpaca NNNNNNNNNNNNNNNNNNNN B D Fugu ==================== B D Atlantic cod ==================== B D Nile tilapia ==================== B D Zebrafish ==================== B D X. tropicalis ==================== B D Turkey ==================== B D Coelacanth ==================== B D Lizard ==================== B D Budgerigar ==================== B D Zebra finch ==================== B D Chicken ==================== B D Sloth NNNNNNNNNNNNNNNNNNNN Inserts between block 18 and 19 in window B D Tasmanian devil 8bp Alignment block 19 of 736 in window, 56695369 - 56695410, 42 bps B D Mouse aa-agcttctgt----t-cgctta-ttcagca--------tttttatca-g--cttgatt B D Rat aa-agcttccgt----t-tgctta-ttcagca--------tttttatca-g--cttgatt B D Kangaroo rat ---cactttctt----t-cgctta-ttcagcatttttttttttttacca-agcctgggtt B D Naked mole-rat aaacgctttcat----t-tgctca-ttcagca--------tttttacca-g--actaatt B D Guinea pig aaccgctttcct----t-tgctaa-ttcagca--------ttttaacca-g--acttatt B D Squirrel aaaagctttcat----t-tgctta-ttcagca--------tttttagca-g--cctgatt B D Rabbit acacactttcat----g-tgctta-ttcagca--------tttttaccg-g--cccaatt B D Pika gaaagcctccga----gttgctgg-ctcagca--------cttgcgccg-g--cctcacg B D Human aaacgctttcat----t-tgttta-ttcagca---------ttttacca-g--cctgatt B D Chimp aaacgctttcat----t-tgttta-ttcagca---------ttttacca-g--cctgatt B D Gorilla aaacgctttcat----t-tgttta-ttcagca---------ttttacca-g--cctgatt B D Orangutan aaacgctttcat----t-ttttta-ttcagca---------tttcacca-g--tctgatt B D Gibbon aaacgctttcat----t-tgttta-ttcagca---------ttttacca-g--cctgatt B D Rhesus aaacgctttcat----t-tgttta-ttcagca---------ttttacca-g--cctgatt B D Baboon aaacgctttcat----t-tgttta-ttcagca---------ttttacca-g--cctgatt B D Marmoset agactctttcat----t-tgttta-ttcagca---------ttttacca-g--cctgatt B D Squirrel monkey agactctttcat----t-tgtttg-ttcagca---------ttttacca-g--cctgatt B D Tarsier gaacgctttcat----g-tgttta-ttcagca--------tttttaccg-g--cctgatt B D Mouse lemur aaacgctttcat----t-tgttta-ttcagca--------tttctacca-g--cctgctt B D Bushbaby aaccgctttcat----t-tgttta-ttcagca--------tttttacca-g--cctgatt B D Tree shrew aaacgctttcatttgct-tgctta-ttcagca--------tttttacta-g--cttgatt B D Pig aaatgctttcat----t-tgctta-ttcagca----------tttaaca-g--cttgatt B D Dolphin aaacgctttcat----t-tgctta-ttcagca--------tttttaaca-g--cctgact B D Sheep aaaagctttcga----t-tgctta-ttcagca--------tttttannn-n--nnnnntt B D Cow aaaagctttcgt----t-tgctta-ttcagca--------tttttaaga-g--cctgatt B D Cat aaacgctttcat----t-tgctta-ttcagca--------tttttatca-g--cccgatt B D Dog aaacgctttcat----t-tgctta-ttcagca--------tttttatca-g--cctgatt B D Panda aaatgctttcat----t-tactta-ttcagca--------tttttatca-g--cctgatt B D Horse aaacgctttcat----t-tgctta-ttcagca--------tttttatga-g--cctgatt D Little brown bat aaacgctttaat----g-tgctta-ttcagca--------cttttatca-g--cataatt B D Megabat aaacgctttcat----t-tgctta-ttcagca--------tttttatca-g--cctgact B D Hedgehog caaggatgtcat----t-tgctta-ttcagca---------ttttctca-g--cctgatt B D Shrew gacagattccat----t-tgctta-ttcagca---------ttttatca-g--cctgatt B D Elephant gaacgctctcat----t-tgctta-ctcagca--------tttttacca-g--tctgatt B D Rock hyrax aaacgctctcat----t-tgctta-ttcagca--------tttttacca-g--tctgagt B D Tenrec aaacgctctcat----t-tgctta-ttcagca--------ttttcacca-g--tctcatt B D Manatee aaacgctctaat----t-tgcttatttcagcg--------tttttacca-g--cctgatt B D Armadillo aaacgctttcat----t-tgctga-ttcagca--------tttttaccctg--tctgatt B D Opossum ----attttaat----t-tgacta-ttcaata--------tatattttg-t--tttgatt B D Tasmanian devil ------tttaat----t-tgacta-accaata--------tatatttat-t--catgatt B D Wallaby -aatgttttaat----t-tgacta-ttcggta--------tatatttag-t--c-tgatt B D Platypus aaatgatctcat----t-ggccta-ttcagca--------tattttcgg-g--tttgatt B D Painted turtle -agcgctatcat----t-aaacta-ttccgca--------tatttccta-t--attaatt B D Alpaca NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN B D Fugu ============================================================ B D Atlantic cod ============================================================ B D Nile tilapia ============================================================ B D Zebrafish ============================================================ B D X. tropicalis ============================================================ B D Turkey ============================================================ B D Coelacanth ============================================================ B D Lizard ============================================================ B D Budgerigar ============================================================ B D Zebra finch ============================================================ B D Chicken ============================================================ B D Sloth NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN Alignment block 20 of 736 in window, 56695411 - 56695437, 27 bps B D Mouse t-t--g-cactctgtttgcg--gcg--cccct-ggg B D Rat t-t--g-tgat--gtttgag--gcg--ccctt-ggg B D Kangaroo rat t-t--g-ctgtctgtttgtg--ccg--cccct-gag B D Naked mole-rat t-t--g-t----tatttgtg--acg--gctct-ggg B D Guinea pig t-g--g-ttgtgtatttgcg--ccg--gtcct-ggg B D Squirrel t----g-ctttctgcttgtg--cctccccccc-ccc B D Rabbit t-t--g-ttgtctgtctgtg--cgg--ccc---ggg B D Pika c-t--g-ctgtctgtgcgtg--ccg--ccccgggga B D Human t-t--g-ctgtctttttgtg--ccg--cttct-ggg B D Chimp t-t--g-ctgtctttttgtg--ccg--cttct-ggg B D Gorilla t-t--g-ctgtctttttgtg--ccg--cttct-ggg B D Orangutan t-t--g-ttgtctttttg-g--ccg--cttct-ggg B D Gibbon t-t--g-ctgtctttttgtg--ccg--cttct-ggg B D Rhesus t-t--g-ctgtctttttgtg--cct--cttct-ggg B D Baboon t-t--g-ctgtctttttgtg--cct--cttct-ggg B D Marmoset t-t--g-ctgtctttttgtg--tcg--cttct-ggg B D Squirrel monkey t-t--g-ctgtctttttatg--tcg--cttct-ggg B D Tarsier c-t--g-ctgtc----tgtg--ccg--cttct-gcg B D Mouse lemur t-t--g-ctgtc----tgtg--ccg--ctcct-ggg B D Bushbaby t-t--g-ctgtctgtttgtg--tgg--ctcct-ggg B D Tree shrew t-t--g-ctgtctgtttgtg--ctg--cccct-ggg B D Pig t-t--g-ctgtctgtttgcg--ctg--cccct-ggg B D Dolphin t-t--g-ctgtctgtttgcg--ctg--cccct-ggg B D Sheep t-t--g-----ctgtttgcg--ctg--cccct-ggg B D Cow t-t--g-----ctgtttgcg--ctg--cccct-ggg B D Cat g-t--g-tcgtctgtttgcg--ctg--ctcct-ggg B D Dog t-t--g-ttgtctgtttgcg--ctg--ccgcc-gga B D Panda -------ttgtctgtttgcg--ctg--ccgct-agg B D Horse t-t--g-ctgtctgtttgtg--ctg--cccct-ggg D Little brown bat t-t--g-ctgtctatttgcg--ctg--ctcct-cgg B D Megabat t-t--g-ctgtctgtttgcg--ttg--ttcct-cgg B D Hedgehog t-t--g-ctgcctgtttgcg--ctg--ccccc-ggg B D Shrew t-t--t-ccgtctgtttgca--ctg--cccct-tgg B D Elephant t-t--g-cagtctgtctacg--ctg--ccctt-ggg B D Rock hyrax t-t--g-ctgtctgtttacg--ctg--cccct-ggg B D Tenrec t-t--g-ctgtctgtttacg--ctg--ctcct-ggg B D Manatee t-t--g-ctgtctgtttacg--ccg--cctct-ggg B D Armadillo t-t--g-ttgtctgtttgcg--cgg--cccct-ggg B D Opossum ttt--g------------ag--ttc--caatt-ggg B D Tasmanian devil ttt--g-ctttctctttaag--tta--caata-ggg B D Wallaby ttt--acctttctctttgag--tta--caatt-ggg B D Platypus t-tc-a-ccgtcggtgggac--tta--ccact-ggg B D Chicken ---ttg-ctctttgcgtgcggctta--ccgcc-tgg B D Painted turtle -----g-cactctctgtgcgactta--ccact-acg B D Alpaca NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN B D Fugu ==================================== B D Atlantic cod ==================================== B D Nile tilapia ==================================== B D Zebrafish ==================================== B D X. tropicalis ==================================== B D Turkey ==================================== B D Coelacanth ==================================== B D Lizard ==================================== B D Budgerigar ==================================== B D Zebra finch ==================================== B D Sloth NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN Alignment block 21 of 736 in window, 56695438 - 56695473, 36 bps B D Mouse a-agacgtcaaacactct--tattc-attg-tattt-agt-ca B D Rat a-agacgtcaaacactcc--tattc-attg-tattt-agt-ca B D Kangaroo rat a-agatgtcaaacacctc--tgttc-cttg-cattt-agt-ca B D Naked mole-rat a-agatgtcaaacaccca--ttttc-tttg-tattt-agt-ca B D Guinea pig a-agatgtcaaacacccg--ttttc-tttg-tattt-agt-ca B D Squirrel a-agatgtcaaataccca--ttttc-attc-tattt-agt-ca B D Rabbit a-ggatgtcaaaccccca--ttttc-cttg-tgttc--gt-ca B D Pika g-ggacgtccgacacccattttttc-ctgg-tgtcccagt-ca B D Human a-agatgtcaaacaccca--ttttc-attg-tattt-agt-ca B D Chimp a-agatgtcaaacaccca--ttttc-attg-tattt-agt-ca B D Gorilla a-agatgtcaaacaccca--ttttc-attg-tattt-agt-ca B D Orangutan a-agatgtcaaacaccca--ttttc-attg-tattt-agt-ca B D Gibbon a-agatgtcaaataccga--ttttc-attg-tattt-agt-ca B D Rhesus a-agatgtcaaacaccca--ttttc-attg-tattt-agt-ca B D Baboon a-agatgtcaaacaccca--ttttc-attg-tattt-agt-ca B D Marmoset a-agatgtcaaacaccca--ttttc-gtgg-tattt-agt-ca B D Squirrel monkey a-agatgtcaaaca--ca--ttttc-gttg-tattt-agt-ca B D Tarsier a-agacgtcaaacaccca--ttttt-attg-tattt-agt-ca B D Mouse lemur a-agatgtcaaacaccca--ttttc-attg-tattt-agt-ca B D Bushbaby a-tgatgtcaaacaccca--ttttc-attg-tattt-agt-ca B D Tree shrew a-agatgtcaaacaccca--ttttc-attg-tattt-agt-ca B D Pig a-aggtgtcaaacaccct--ttttc-gttg-cattt-agt-ca B D Dolphin a-aggtgtcaaacacctc--ttttc-attg-tattt-agt-ca B D Sheep a-aggtgtcaaacacctc--ttttc-attg-tattt-agt-ca B D Cow a-aggtgtcaaacacctc--ttttc-attg-tattt-agt-ca B D Cat a-aggtgtcaaactccca--ttttc-attg-tattt-agt-ca B D Dog a-aggtgtcaaacatcca--ttttc-attg-tattt-agt-ca B D Panda a-aggtgtcaaacaccca--ttttc-attg-tattc-agt-ca B D Horse a-aggtgtcaaacaccca--ttttc-attg-tattt-agt-ca D Little brown bat a-aggtgtcaaacaccga--atttc-attg-tattt-agt-ca B D Megabat a-aggtgtcaaacaccca--ttttc-attg-tattt-agt-ca B D Hedgehog a-aggtgtcaaacaccta--tttttgattg-tcttt-agt-ca B D Shrew a-aggtgtcaaatgccca--ttttcaattg-tattt-agt-ca B D Elephant a-agatgtcaaacaccca--ttttc-attg-tattt-agt-ca B D Rock hyrax a-cgatgtcaaacaccca--ttttc-gttg-tattt-agt-ca B D Tenrec a-agatgtcaaacaccca--ttttc-attg-tattt-agt-ca B D Manatee a-acatgtcaaacaccca--ttttc-attg-tattt-agt-ca B D Armadillo a-agaagtcaaacaccca---tttc-attg-tattt-agt-ca B D Opossum c-tgatgttaaatattca--tttcc-attgttattt-agt-aa B D Tasmanian devil c-agatgttaaatattca--tttct-attgttattt-aga-aa B D Wallaby c-agatgttaaatattca--tttct-attgttattt-agt-aa B D Platypus gcagatgttaaatattca--tttcc-attg-tattt-agc-ca B D Chicken c-aggtattacgcgggcg--ttgct-gttg-tggta-ggg--- B D Painted turtle t-aggtatttaatattcg--tctct-attg-tatta-ggaa-- B D Coelacanth a-aaatttaaaataccca--tttca-acta-c-tgt-agt-gg B D Alpaca NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN B D Fugu =========================================== B D Atlantic cod =========================================== B D Nile tilapia =========================================== B D Zebrafish =========================================== B D X. tropicalis =========================================== B D Turkey =========================================== B D Lizard =========================================== B D Budgerigar =========================================== B D Zebra finch =========================================== B D Sloth NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN Alignment block 22 of 736 in window, 56695474 - 56695586, 113 bps B D Mouse cccaggtgcggagcc-agccagaaacagacggcgg-aaggagtttccc-ggactgagctgtcactcaccg B D Rat cccaggtgcggagcc-agccagaaacagacggcgg-aaggagtttccccggactgagctgccactcaccg B D Kangaroo rat tccaggtgaggagccaagcccgcagaagacagcgg-aaggagtttccc-ggactgcgctgtcactcaccc B D Naked mole-rat cccaggtgcggagcc-agcctgaagaagacagcgg-aaggagtttccc-ggactgcgctgtcgctcaccg B D Guinea pig tccaggtgcggagcc-agcctgaaaaagacagcgg-aaggaattttcc-ggactgcgctgccgctcacag B D Squirrel cccaggtgcggagcc-agcctgaaaaagacagcgg-aaggagtttccc-ggaccgcgctgtcactcaccg B D Rabbit ctcaggtgcggagac-ggaccgagagagacagcgg-aaggagtttccc-gggctgtgccgtcgctcaccg B D Pika cccaggtgcggagac-gg-tcgcaggagacggcgg-aaggagtttcccggggccgcgctgtcgctcaccg B D Human cccaggtggggagct-agcctgaaagagacagcgg-aaggagtttcct-ggactgcgctgtcgctcaccg B D Chimp cccaggtggggagct-agcctgaaagagacagcgg-aaggagtttcct-ggactgcgctgtcgctcaccg B D Gorilla cccaggtggggagct-agcctgaaagagacagcgg-aaggagtttcct-ggactgcgctgtcgctcaccg B D Orangutan cccaggtggggagcc-agcctgagagagacagcgg-aaggagtttcct-ggactgcgctgtcgctcactg B D Gibbon cccaggtggggagcc-agcctgaaagagacagcgg-aaggagtttcct-ggactgcgctgtcgctcaccg B D Rhesus cccaggtggggagcc-agcctgaaagagacagcgg-aaggagtttcct-ggactgcgctgtagctcaccg B D Baboon cccaggtggggagcc-agcctgaaagagacagcgg-aaggagtttcct-ggactgcgctgtagctcaccg B D Marmoset cccaggtggggggcc-agcctgaaagagatagcgg-aaggagtttcct-ggactgccctgccgctcaccg B D Squirrel monkey cccaggtggggagct-agcctgaaagagacagcgg-aaggagtttcct-ggacctccctgtcgctcaccg B D Tarsier cccaggtggggagcc-agcctgagagagacggcgg-aaggagtttcct-ggactgcgctgtcgctcagcg B D Mouse lemur cccaggtggggagcc-agcccgaaaggaacagcgg-aaggagtttcct-ggactgtgctgtcgctcaccg B D Bushbaby cccaggtggggagcc-agcccgaaagggacggcgg-aaggagtttccc-ggactgcgctgtcgctctccg B D Tree shrew cccaggtgcggagca-agcctg--agagacagcgg-aaggagttgccc-ggattgggctgtcgctcacga B D Pig cccaggtgcagagca-cgattgaaagagacagcgg-aaggactttccc-agactgtgctgtcgttcagca B D Dolphin cccaggtgctgagca-agattgaaagagacagcgg-aaggactttccc-ggactgtgctgtcgctcaacg B D Sheep cccaggtgcagagcg-agattgaaagagacagcgg-aagaactttccc-ggactgtgctgtcgctcaacg B D Cow cccaggtgcagagcg-agattgagagagacagcgg-aagaactttccc-ggactgtgctgtcactcaacg B D Cat cccaggtgcagagca-agcttgaaagagacagcgg-aaggactttccc-ggactgcactgtcgctcagct B D Dog cccaggtgcagagca-agcttgaaagagacagcgg-aagaactttccc-ggactgcactgtcgctcagca B D Panda cccaggtgcagagcg-agcttgaaagagacagcgg-aaggactttccg-ggactgcactgtcgctcagcg B D Horse cccaggtgccgagca-ggcttgaaagagtcagcgg-aaggacttacc--ggaccgcactgtcgctcactg D Little brown bat cccaggtgcccagca-agct-ggaggagacagcgg-aaggactttccc--gacggcgctgtcgctcacgg B D Megabat cccaggtgcggagcc-agctcgaaagagacagcgg-aaggactttccc-ggaccgcactgtcgctcaccg B D Hedgehog cccaggtgcggggag-agcctgccaaggacggcgg-aaggactttccc-cgacttcgctgtcgctcagcg B D Shrew ctcaggtgcggagcc-agcctgaaagagacagcgg-aaggactttccc-ggactacagtgtcgctcagca B D Elephant cccaggtgcagagca-agtctgaaagagacaacgg-aaggagcttccc-ggacagcgctgtcgctcaacg B D Rock hyrax cccaggtgcagggcc-agtctg--agagacaacag-aaggagcttcct-ggacagcgctgtcgctcaacg B D Tenrec cccaggtgcagagca-a-tctgaaagagacaacgg-aaggagtttccc-ggcctgcgctgtcgctcaacg B D Manatee cccaggtgcagaaca-agtctgaaagagacaacgg-aaggagtttccc-gtactgcgctgtcgctcaacg B D Armadillo cccaggtgcggagct-agcccgagagagacagcgg-aaggagttcccc-gagccgcgctgctactcaccg B D Opossum tccaggtgcggagct-ctcctaaaagagagaacgg-aaggagttaccg-ggattatactgtctgttacca B D Tasmanian devil tccaggtgctgagta-ctact--aagagagaacgg-aaggagtttcca-ggattgtactgtcagttacct B D Wallaby tccaggtgctgagca-cgcctaaaagagagaacgg-aaggagtttcca-ggattactctgtctgttacct B D Platypus tccaggtgccgagca-tgcctgc-ggagagaacgg-aaggagcttgcg-ggattttgctgtcggtcccag B D Chicken accaggtgctgagca-cgtccgcgagaggcagcgg-aaaggcc-gccg-gccccgcgctgtccgtcatct B D Budgerigar cccaggtgccgggcc-cggtggcggggcagagcgg-aagggcc-gtca-gcgcttcgctgtccgtcatgt B D Painted turtle tccaggtgctgagca-tgcctgcaaaagaaagcgg-aagagccttcct-ggattatgctgtctatcatca B D Coelacanth tcttggtgaggagca-tgcctgatggaaggagcagaaaaaagattcca-ggattgtgctgtcggtcatac B D Alpaca NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN B D Fugu ====================================================================== B D Atlantic cod ====================================================================== B D Nile tilapia ====================================================================== B D Zebrafish ====================================================================== B D X. tropicalis ====================================================================== B D Turkey ====================================================================== B D Lizard ====================================================================== B D Zebra finch ====================================================================== B D Sloth NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN Mouse -gcctgcaccaattacaacgcagattgctcgcgggcccacctct----tt-t Rat -gcctgcaccaattacaacgcagattgcccgcgggcccacctct----tt-t Kangaroo rat -atccgaagcaatcagcacgcagcttgctctcgggcccgcctct----tt-a Naked mole-rat -gctcccaccaatcaccatgcagttttccctcgagcccgcctct----tt-g Guinea pig -gcctgcaccaatcaccaagcagttcgccctcgggcccgcctct----tt-a Squirrel -aacgacaccaatcatcacgcagcttgccctcggaccctcctct----tt-g Rabbit -tcgggcgccaatcaacacgcagttttctctcgggcccgcctct----tt-g Pika -gcctgcaccaatcaacacgcggcgtgctgccgggcccgcctct----tg-g Human -acccgcaccaatcaccatgcagcttgccctcggacccgcccct----tt-t Chimp -acccgcaccaatcaccatgcagcttgccctcggacccgcccct----tt-t Gorilla -acccgcaccaatcaccatgcagcttgccctcggacccgcccct----tt-t Orangutan -acccgcaccaatcaccacgcagcttgccctcggacccgcccct----tt-t Gibbon -acccgcaccaatcaccacgcagtttgccctcggacccgcccct----tt-t Rhesus -acccgcaccaatcaccacgcagcttgccctcggacccgcccct----tt-t Baboon -acccgcaccaatcaccacgcagcttgccctcggacccgcccct----tt-t Marmoset -gcccgtaccaatcaccacgcagctcgccctcaggcccgcctct----tt-g Squirrel monkey -gccggcaccaatcaccacgcagcttgccctcgggcccgcctct----tt-g Tarsier -gcccgcaccaaccaccacgcagcttgtcctcgggcccgcctct----tt-g Mouse lemur -gctcgcaccaatcaccatgcagctcgctcttgggcccgcctct----tc-a Bushbaby -gatcgcaccaatcaacacgcagcttgcgcttgggcccgcctct----tt-g Tree shrew -ccctgctccaatcactacgctgcttgccctcaggcccgcctct----tt-g Pig -gactacaccaatcaccacgcagcttcctctcgggcccgcctct----ttgg Dolphin -gaccaaaccaatcagcatgcagcttgccttcgggccctcctct----tt-- Sheep -ggccaaaccaatcatcacgcaggttgcctccgggccctcctct----tt-g Cow -ggccaaaccaatcatcacgcaggttgcctccgggccctcctct----tt-g Cat -ggccgcaccaatcaccacgcagcttgccctcggaccctcctct----tt-g Dog -gcccgcaccaatcaccacgcagcttgacctcgggccctcctct----tt-g Panda -gcccgcaccaatcaccacgcagcttgacctcgggccctcctct----tc-g Horse -gcccgcaccaatcaccacgctgcttgtcctcggaccctcctct----tt-g Little brown bat -ccccgcaccaatcaccgcgcagcttgccctcgggcccacccct----ttgg Megabat -gcccacaccaatcaccacgcagcttgccctcggaccctcctct----ttgg Hedgehog cggccacaccaatcaccgcacggctggccctcggaccctcctct----ccgg Shrew -ggtcacaccaatcggcgcacagtgtgccccagggccctcctct----tt-g Elephant -actctcaccaatcgcagcacagagtgccctcgggcccgcctct----tt-g Rock hyrax -tcttggaccaatcactgcacatagtggcctagggcccgcctcc----tt-g Tenrec -gctcgtccctatcagcgcgcagattgccctggggcccgcctct----tt-g Manatee -gctcacaccaatcacagcacagagtgccctcgtgcccgcctct----tt-g Armadillo -agccgcaccaatcaccgcgcagctcgccctccggcccgcctcc-----c-g Opossum -tctacagccaatctcaaagtcttcttctttgagtcccgcctcc----tt-g Tasmanian devil -tctgcagccaatctcaaaatcattttctttgaggcccgcctct----tt-g Wallaby -tctacagccaatctcaaagtcgttttctacgagacccgcctcc----tt-g Platypus -ttttgcaccaatcgcaagggcgcctttccgtgatcccgccttt----tt-g Chicken -cccgcggccactggcggggctgcagggccgccgggccgcccccg------- Budgerigar -cctttggccactgggagggaggctgggcggtggggccgccccc-------- Painted turtle -tcgagcaccaattggaaggccccttttccttgggtccgccctt-cgg---- Coelacanth -tccttagccaataggaagtcaaact-cctttataccctccttc----ct-a Alpaca NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN Fugu ==================================================== Atlantic cod ==================================================== Nile tilapia ==================================================== Zebrafish ==================================================== X. tropicalis ==================================================== Turkey ==================================================== Lizard ==================================================== Zebra finch ==================================================== Sloth NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN Inserts between block 22 and 23 in window B D Budgerigar 1bp B D Painted turtle 1bp Alignment block 23 of 736 in window, 56695587 - 56695666, 80 bps B D Mouse gg--ggtgtgt--cacaagtgagtgatag-actgagcc-----gcccggccct-gctcagcccagcccac B D Rat gg--ggtgtgt--cacaagtgagtgatag-actgagcc-----gcccggccct-acacagcccagcccac B D Kangaroo rat gg--ggcgtgt--ccctagtgagtgatag-acggagcc-----gcccggccca-gcgcagcccagcccac B D Naked mole-rat gg--ggtgtgt--ccccagtgagtgatag-acggagcc-----gcccggccct-gctcagcccagcccac B D Guinea pig gg--ggtgtgt--ccctagtgagtgatag-acagagcc-----tcccggccca-gctcagcccagcccac B D Squirrel gg--ggtgtgc--ccttagtgagtgatag-acggagcc-----gcccggccct-actcagcccagcccac B D Rabbit ggg-ggcgtgt--ccctagtgagtgatag-acggagcc-----gcccggccct-gctcagcccagcccac B D Pika gggaggcgtgt--cccccgtgagtgatag-acggagcc-----gcccggccct-gctcagcccagcccac B D Human ag--ggcgtgt--ccccagtgagtgatag-acggagcc-----gccctgccct-gctcagcccagcccac B D Chimp ag--ggcgtgt--ccccagtgagtgatag-acggagcc-----gccctgccct-gctcagcccagcccac B D Gorilla ag--ggcgtgt--ccccagtgagtgatag-acggagcc-----gccctgccct-gctcagcccagcccac B D Orangutan ag--ggcgtgt--ccccagtgagtgatag-acggagcc-----gccctgccct-gctcagcccagcccac B D Gibbon ag--ggcgtgt--ccccagtgagtgatag-acggagcc-----gcccggccct-gctcagcccagcccac B D Rhesus ag--ggcgtgt--ccccagtgagtgatag-actgagcc-----gcccggcccc-gctcagcccagcccac B D Baboon ag--ggcgtgt--ccccagtgagtgatag-actgagcc-----gcccggccct-gctcagcccagcccac B D Marmoset ag--ggcgtgt--ccccagtgagtgatag-acggagcc-----gcccggccct-gctcagcccagcccac B D Squirrel monkey ag--ggcgtgt--ccccagtgagtgatag-acggagcc-----gcccggccct-gcgcagcccagcccac B D Tarsier gg--ggcgtgt--ccacagtgagtgatag-acggagcc-----gcccggccct-gctcagcccagcccac B D Mouse lemur gg--ggcgtgt--ccccagtgagtgatag-acggagct-----gcccggccct-gctcagcccagcccac B D Bushbaby gg--ggcgcgt--ctctagtgagtgatag-actgagcc-----gcccggccct-gctcagcccagcccac B D Tree shrew gg--ggcgtgt--ccctagtgagtgatag-acggagcc-----gcccggccca-gatcagcccagcccac B D Pig gg--ggcgtgt--ccctagtgagtgatag-acggagcc-----gcccgg-ccc-gttcagcccagcccac B D Dolphin gg--ggcgtgt--ccctagtgagtgatag-acggagcc-----gcccggcccc-gctcagcccagcccac B D Sheep gg--ggcgtcc--ccctagtgagtgatag-acggagcc-----gcccggcccc-gctcagcccagcccac B D Cow gg--ggcgtgc--ccctagtgagtgatag-acggagcc-----gcccggcccc-gctcagcccagcccac B D Cat ag--ggcgtgt--ccctggtgagtgattg-acggagcc-----gcccggccca-gctcaggccagcccac B D Dog ag--ggcgtgt--ccctggtgagtgatag-acggagcc-----gcccggccca-gctcgggccagcccac B D Panda gg--ggcgtgt--ccccagtgagtgatag-acggagcc-----gcccggccca-gctcaggccagcccac B D Horse gg--ggcgtga--ccctaatgagtgatag-acggagtc-----gcccggcccc-gctcagcccagcccac D Little brown bat gg--ggcgtgt--ccttggtgagtgatag-acagagcc-----gcccgg-ccc-gctcagcccagcccac B D Megabat gg--ggcgtgt--ctctagtgagtgatag-acagagct-----gcccggcccc-gctcagcccagcccac B D Hedgehog gg--ggcgtgt--cgctcgtgagtgatag-acggagcc-----gcccggcccc-gcgcagcccagcccac B D Shrew tg--ggcgtgt--ccctagtgagtgatag-acggagcc-----gcccggcccc-actcagcccagcccac B D Elephant gg--ggcgtgt--ccctagtgagtgatag-acggagcc-----gcccggcccc-gctcgacccagcccac B D Rock hyrax gg--ggcgtgt--ccctagtgagtgatag-acggagcc-----gcccggccct-gctgaacccagcccac B D Tenrec gg--ggcgtgt--ccctagtgagtgatagcccgaagcc-----gcccggccccgggtcaacccagcccac B D Manatee gg--ggcgtgt--ccctagtgagtgatag-acggagcc-----gcccggcccc-gctcaacccagcccac B D Armadillo ag--ggcgtgt--ccccagtgagtgatag-acggcgcc-----gcccggcccc-gctcagcccagcccac B D Opossum gg--ggtgggc--cactagtgattgatag-gcagagac-----acccctccca-actcagcccagcccac B D Tasmanian devil ga--ggtgggt--cattggtgattgatag-gcagagac-----actcagccca-actcagcccagcccac B D Wallaby ga--ggtgggt--cactggtgattgatag-gcagagac-----acccagccca-actcagcccagcccac B D Platypus gg--ggcgcgg--ccctggtgactgatag-gcagggtc-----gcccggccca-gcccggcccagcccac B D Chicken gg--ggcggg---ctc--gggagcggggg-gctgcggc-----tcccggccca-gcccggccctgcccac B D Zebra finch gg--ggcggg---ctcgggggggcggtgg-accacgg------gaccggccca-gcccggccctgcccac B D Budgerigar ag--ggcggg---cccgagggagcagggg-gccgctgc-----gcccggccca-gcccagccctgcccac B D Painted turtle gg--ggggggtgcctctggtgactgatag-actgagacgcccggcccagccca-gcccagcccagcccac B D Coelacanth --taggcgcgt--ctttattgatagacag-aaggaatt-----gctttgccta-gccgagcccaacccac B D Alpaca NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN B D Fugu ====================================================================== B D Atlantic cod ====================================================================== B D Nile tilapia ====================================================================== B D Zebrafish ====================================================================== B D X. tropicalis ====================================================================== B D Turkey ====================================================================== B D Lizard ====================================================================== B D Sloth NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN Mouse gttgctgc-tta-gattgaaatg Rat gttgctgc-tta-gattgaaatg Kangaroo rat gttgctgc-tta-gattgaaatg Naked mole-rat gttgctgc-tga-gattgaaatg Guinea pig gttgctgc-tga-gattgaaatg Squirrel gttactgc-tta-gattgaaatg Rabbit gttgctgc-tta-gattgaaatg Pika gccgctgc-tta-gattgaaatg Human gttgctgc-tta-gattgaaatg Chimp gttgctgc-tta-gattgaaatg Gorilla gttgctgc-tta-gattgaaatg Orangutan gttgctgc-tta-gattgaaatg Gibbon gttgctgc-tta-gattgaaatg Rhesus gttgctgc-tta-gattgaaatg Baboon gttgctgc-tta-gattgaaatg Marmoset gttgcagc-tta-gattgaaatg Squirrel monkey gttgctgc-tta-gattgaaatg Tarsier gttgctgc-tta-gattgaaatg Mouse lemur gttgctgc-tta-gattgaaatg Bushbaby gttgctgc-ttg-gattgaaatg Tree shrew gttgctgc-tta-gattgaaatg Pig gttgctgc-tta-gattgaaatg Dolphin gttgctgc-tta-gattgaaatg Sheep gttgctgc-tta-gattgaaatg Cow gttgctgc-tta-gattgaaatg Cat gttgctgc-tta-gattgaaatg Dog gttgctgc-tta-gattgaaatg Panda gttgctgc-tta-gattgaaatg Horse gttgctgc-tta-gattgaaatg Little brown bat gttgctgc-tta-gattgaaatg Megabat gttgctgc-ttg-gattgaaatg Hedgehog gttgctgcttta-gattgaaatg Shrew gttgctgc-tta-gattgaaatg Elephant gttgctgc-tta-gattgaaatg Rock hyrax gttgctgc-tta-gattgaaatg Tenrec gttgctgc-ttaggattgaaatg Manatee gttgctgc-tta-gattgaaatg Armadillo gctgctgc-tta-gattgaaatg Opossum tttactgc-tta-gattgaaatg Tasmanian devil tttactgc-tta-gattgaaatg Wallaby tttactgc-tta-gattgaaatg Platypus gttgctgc-ttg-gattgaaatg Chicken gttgcc-c-tga-ggttgaaatg Zebra finch gctgcc-c-tga-ggttgaaatg Budgerigar gttgcc-c-tga-ggttgaaatg Painted turtle gttgct-g-tga-gattgaaatg Coelacanth ttagcta--tta-gtctgaaatg Alpaca NNNNNNNNNNNNNNNNNNNNNNN Fugu ======================= Atlantic cod ======================= Nile tilapia ======================= Zebrafish ======================= X. tropicalis ======================= Turkey ======================= Lizard ======================= Sloth NNNNNNNNNNNNNNNNNNNNNNN Alignment block 24 of 736 in window, 56695667 - 56695723, 57 bps B D Mouse cagaactcaagcctctttcagcccggcacagacttccttttactctttcc---tt--tggca B D Rat cagaactcaagcctctttcagccgggcacagacttccttttactctttcc---tt--tggca B D Kangaroo rat cagaactcaaacctctttcatcggggcacagacttccttttactccttcc---tt--ttacg B D Naked mole-rat cagaactcaagcctctttcatcggggcacagacttccttttactccttcc---tt--ttgca B D Guinea pig cagaactcaagcctctttcatcggggcacagacttccttttactctttcc---tt--ttgca B D Squirrel cagaactcaagcctctttcatcagggcacagacttccttttactccttcc---tt--ttgca B D Rabbit cagaactcaagcctctttcatcggggcacagacttccttttactccttcc---tt--ttgca B D Pika cagaactcaagcctctttcatcggggcgcagacttccttttactccttcc---tt--ttgca B D Human cagaactcaagcctctttcatcggggcacagacttccttttacttcttcc---tt--ttgcc B D Chimp cagaactcaagcctctttcatcggggcacagacttccttttacttcttcc---tt--ttgcc B D Gorilla cagaactcaagcctctttcatcggggcacagacttccttttacttcttcc---tt--ttgcc B D Orangutan cagaactcaagcctctttcatcggggcacagacttccttttacttcttcc---tt--ttgcc B D Gibbon cagaactcaagcctctttcatcggggcacggacttccttttacttcttcc---tt--ttgcc B D Rhesus cagaactcacgtctctttcatcggggcacagacttccttttacttcttcc---tt--ttgca B D Baboon cagaactcaagtctctttcatcggggcacagacttccttttacttcttcc---tt--ttgca B D Marmoset cagaactcaagcctctttcaccggggcacagacttccttttacttcttcc---tt--ttgca B D Squirrel monkey cagaactcaagcctctttcatcggggcacagacttccttttacttcttcc---tt--ttgca B D Tarsier cagaactcaagcctccttcaaccgggcacagacttccttttactccttcc---tt--ttgca B D Mouse lemur cagagctcaagcctctttcatcggggcacagacttccttttactccttcc---tt--ttgca B D Bushbaby cagagctcaagcctctttcatcggggcacagacttccttttactccttcc---tt--ttgcc B D Tree shrew cagaactcaagcctctttcatcggggcacagacttccttctactccttcc---tt--ttgca B D Pig cagaactcaagcctctttcagcggagcacagacttccttttactccttcc---tt--ttgca B D Dolphin cagaactcaagcctctttcatcggggcacagacttccttttactccttcc---tt--ttgca B D Cow cagaactcaagcctctttcagcggggcacagacttccttttactccttcc---tt--ttgca B D Cat cagaactctagcctctttcatcggggcacagacttccttttactccttcc---tt--ttgca B D Dog cagaactctagcctctttcatcggggcacagacttccttttactccttcc---tt--ctgct B D Panda cagaactctagcctctttcatcggggcacagacttccttttactccttcc---tt--ctgca B D Horse cagaactcaagcctctttcatcggggcacagacttccttttactccttcc---tt--ttgca D Little brown bat cagaactcaagcctctttcagcggggcacagacttccttttactccttcc---tt--ttgca B D Megabat cagaactcaagcctctttcatcggggcacagacttccttttactctttcc---tt--ttgca B D Hedgehog cagaactcaagcctctttcatcagggcacagacttccttttacttcttcc---tt--tagct B D Shrew cagaactcaagcctctttcatcggggcacagacttccttttactctttcc---tt--ttgca B D Elephant cagaactcaagcctctttcatcccggcacagacttccttttactccttcc---tt--ttgca B D Rock hyrax cagaactcaagcctctttcatcccggcacagacttccttttactccttcc---tt--ttgca B D Tenrec cagaactcaagcctctttcatccccgcacagacttccttttactccttcc---tt--ttgca B D Manatee cagaactcaagcctctttcatcccggcacagacttccttttactccttcc---tt--ttgca B D Armadillo cagaactcaagcctctttcatcagggcacggacttccttttactccttcc---tt--tcgta B D Opossum cagaactcatacctctttcatcagggcacagacttccttttattcctttc---tc--tttaa B D Tasmanian devil cagaactcgtacctctttcttcgggacacaaacttccttttatccctttc---cccttttaa B D Wallaby cagaactcatacctctttcatcggggcacagacttcc-tttattcctttc---cccctttaa B D Platypus cagaactcaaacctctttcatcgggacacggacttcctttttctcctttcccact--tta-- B D Chicken cagaactcaaggctctctcgccgggaagtagatttcctcgtagtcctttt-ttcc--tcgcc B D Zebra finch cagaagtcaaggctctcttgtcgggatgtagatttccttgtagttcttttcttcc--tcacg B D Budgerigar cagaagtcaaggctctctcctcgggaagtagattttcttgtagtcctttttcccc--tccag B D Painted turtle cagaactcaagtctctttcatcgggaaacagacttccttttagccttttt---cc--ttacg B D Coelacanth cagaacttaag--tctttcatcgggaagcaggctcattttcaacccttta---ag--ctacg B D Alpaca NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN B D Sheep NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN B D Fugu ============================================================== B D Atlantic cod ============================================================== B D Nile tilapia ============================================================== B D Zebrafish ============================================================== B D X. tropicalis ============================================================== B D Turkey ============================================================== B D Lizard ============================================================== B D Sloth NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN Inserts between block 24 and 25 in window B D Opossum 1bp B D Tasmanian devil 1bp B D Wallaby 1bp Alignment block 25 of 736 in window, 56695724 - 56695748, 25 bps B D Mouse c--tcttgtcgcctcctcccgggaaga B D Rat c--tcttgtcgcctcctcccggggaga B D Kangaroo rat c--tcttgccgcctcctcctggggaga B D Naked mole-rat c--tcgtgccgcctcctcccgggaaga B D Guinea pig c--tcgtgcctcctcctcccggggaga B D Squirrel c--tctcgcctcctcctcccggggaga B D Rabbit c--tctcgccgcctcctcccggggaga B D Pika c--tcttgccgcctcctcccggggaga B D Human c--tctcgcctcctcctcctgggaaga B D Chimp c--tctcgcctcctcctcctgggaaga B D Gorilla c--tctcgcctcctcctcctgggaaga B D Orangutan c--tctcgcctcctcctcctgggaaga B D Gibbon c--tctcgcctcctcctcctgggaaga B D Rhesus c--tctcgcctcctcctcctgggaaga B D Baboon c--tctcgcctcctcctcctgggaaga B D Marmoset c--tctcgcctccacctcctgggaaga B D Squirrel monkey c--tctcgcctcctcctcctgggaaga B D Tarsier c--tctcgccgcctcctccggggaaga B D Mouse lemur c--tcttgcctcctccacccgggaaga B D Bushbaby c--tcttgcctcctcctcctgggaaga B D Tree shrew c--tctcgccgcctcctcccggggaga B D Pig c--tctcgccgcctcctcccggggaga B D Dolphin c--tctcgccgcctcctcccggggaga B D Cow c--tctcgccgcctcctccgggggaga B D Cat c--tctcgccgcctcctcccgggaaga B D Dog c--tctcgccgcctcctcccgggaaga B D Panda c--tctcgccgcctcctcccgggaaga B D Horse c--tctcgccgcctcctcctggggaga D Little brown bat c--tctcgccgcctcctcccggagaga B D Megabat c--tctcgccgcctcttctcgggaaaa B D Hedgehog c--tctcgccgcctcctcccgcggcga B D Shrew c--tctcgccgcctcctctcggggtga B D Elephant c--tctcgccgcctcctctcggggaga B D Rock hyrax c--tctcgccgcctcctctcgaggaga B D Tenrec ct-tctcgccgcctcctctcggggaga B D Manatee c--tctcgccgcctcctctcggggaga B D Armadillo c--tctcgccgcctcctccccgggaga B D Opossum t--tctttctgtctgctcctgggatca B D Tasmanian devil t--tcttgttctctgctcctgggttca B D Wallaby t--tcttgctgtctgctcctgggatca B D Platypus -cgtcctagagtctcctcc-ggggaaa B D Chicken c--ccctgctatctcctc--ggcggca B D Zebra finch c--taccgttccctcctc--agcggag B D Budgerigar c--ccttgctgccttctc--cgtggag B D Painted turtle t--tcttgctatctcctag-agtggaa B D Coelacanth t--tctttatatctacttcagtgggaa B D Alpaca NNNNNNNNNNNNNNNNNNNNNNNNNNN B D Sheep NNNNNNNNNNNNNNNNNNNNNNNNNNN B D Fugu =========================== B D Atlantic cod =========================== B D Nile tilapia =========================== B D Zebrafish =========================== B D X. tropicalis =========================== B D Turkey =========================== B D Lizard =========================== B D Sloth NNNNNNNNNNNNNNNNNNNNNNNNNNN Inserts between block 25 and 26 in window B D Coelacanth 524bp Alignment block 26 of 736 in window, 56695749 - 56695847, 99 bps B D Mouse agc-caaggcacc---c--tcggc---------t-t-ggagcagcgacaggc--------cgg------c B D Rat agc-caaggcacc---c--gcggc---------t-t-ggagcagcgacaggc--------cgg------c B D Kangaroo rat agc-tgaggcacc---c--gccgc---------c-c-agagccgcgacaggc--------cgg------g B D Naked mole-rat agc-tgagacgcc---a--gcagc---------c-c-ggagcagcgacaagc--------cgg------g B D Guinea pig acc-taagatacc---g--gcagc---------c-c-ggagcaccgacaagc--------cgg------g B D Squirrel agc-tgaggtacc---a--gcaac---------c-c-ggagcagcgacaggt--------cgg------g B D Rabbit agc-ggaggcacc---g--gcggc---------c-c-ggggcagcgacaggc--------cgg------g B D Pika acc-cgaggcccc---g--gcggc---------cgc-gggatagagccaggc--------cgg------g B D Human agc-ggaggcgcc---g--gcggt------cggc-c-gggatagcaacaggc--------cgg------g B D Chimp agc-ggaggggcc---g--gcggt------cggc-c-gggatagcaacaggc--------cgg------g B D Gorilla agc-ggaggcgcc---g--gcggt------cggc-c-gggatagcaacaggc--------cgg------g B D Orangutan agc-ggaggcgcc---g--gcggt------cggc-c-gggatagcaacaggc--------cgg------g B D Gibbon agc-ggaggcgcc---a--gcagt------cggc-c-gggatagaaacaggc--------cgg------g B D Rhesus atc-ggaggcgcc---g--gcggt------ccgc-c-cgggtagcaacaggc--------cgg------g B D Baboon atc-ggaggcgcc---g--gcggt------ccgc-c-cgggtagcaacaggc--------cgg------g B D Marmoset agc-ggaggcgcc---g--gcggc---------t-c-ggggtagcaacaggc--------cgg------g B D Squirrel monkey agc-ggaggcgcc---g--gcggc---------c-c-ggggtagcaacaggc--------cgg------g B D Tarsier cgc-ggaggcacc---g--gcggt---------c-c-ggggtcgcgacaggc--------cgg------c B D Mouse lemur agc-ggaggcatc---g--gcggc---------c-t-ggggtagcaacaggc--------tgg------g B D Bushbaby agc-ggaggcacc---g--gcagc---------c-c-ggggtaaccacaggc--------tgg------g B D Tree shrew agc-cgaggcccc---g--gcggc---------c-c-cgggcagcgacaggc--------cgg------t B D Pig agc-ggaggc--------------------------------agcgacaggc--------cgg------g B D Dolphin agc-ggaggcacc---a--gcggc---------c-cggggggagcgacacac--------cgg------g B D Cow agc-ggaggcacc---g--gcggc---------c-c-ggggcagcagcacga--------cgg------g B D Cat agc-ggaggcacc---g--gcggc---------c-c-ggggcagcgacgagc--------cgg------g B D Dog agc-ggaggcacc---g--gcggt---------c-c-ggggcagcggcaagc--------cgg------g B D Panda agc-ggaggcacc---g--gctgc---------c-c-ggggcagcgacaagc--------cgg------g B D Horse agc-ggaggcacc---g--gcggc---------c-c-ggggcagcgacaggc--------cgg------g D Little brown bat agc-ggaggcacc---c--acggc---------c-t-ggggcagcgacaggc--------tgg------g B D Megabat agc-agaggcacc---c--acggc---------c-c-agggcatcgacaggc--------tgg------g B D Hedgehog agc-gga---------g--gcggc---------c-g-gggacagcggccgga--------cgg------g B D Shrew agc-ggaggcacc---g--gcggc---------c-c-agagctgcgatagac--------cgg------g B D Elephant agc-ggaggcacc---g--gcggc---------c-c-ggggcaaccataggc--------cgg------t B D Rock hyrax agc-ggaggcaccggag--gaggc---------c-c-ggggcaacgataggc--------tgg------t B D Tenrec agcgggaggcttc---g--gcggc---------c-c-agggcaattataggc--------cggg----tt B D Manatee agc-ggagtcacc---g--gcggc---------c-t-ggggcaacgataggc--------cgg------t B D Armadillo agc-agaggcacc---g--gcggc---------c-c-ggggcaccgacagac--------cgg------g B D Opossum atc-ggagggacc---c--gtggc---------c-a-gagctagagg-agacagaaatatcga------a B D Tasmanian devil aca-ggagggact---c--gtggc---------t-a-gaactagagg-agac--------tga------a B D Wallaby aca-ggagggacc---caggtggc---------c-t-gaggtagaag-agac--------tga------a B D Platypus gca-ggagggacc---g--gtggc---------c-c-gggagaccggggggg--------tggggggttg B D Chicken agc-agggagccc---g--gcgggcgagcgcggc-c-ggggcggcgggaggt--------cgg------g B D Zebra finch atc-agagaggct---c--g-gggccagtgcggc-c-aggagcgcagaaggc--------cgg------g B D Budgerigar ctc-aacgagccg---c--gggagctagtgcagc-c-aggagcgcgggaggc--------tgg------g B D Painted turtle atc-agagagacc---c--gtggacttttccagc-c-gggattgcaggaggc--------cgg------g B D Alpaca NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN B D Sheep NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN B D Fugu ====================================================================== B D Atlantic cod ====================================================================== B D Nile tilapia ====================================================================== B D Zebrafish ====================================================================== B D X. tropicalis ====================================================================== B D Turkey ====================================================================== B D Coelacanth ====================================================================== B D Lizard ====================================================================== B D Sloth NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN Mouse tcagtgagaacaaga---aaaaagtttc-----------tttctgggagtgcggaactggggccgggttg Rat ccagtgagagcaagg---aaaaagtttc-----------tttctgggagtgcggaactggggccgggttg Kangaroo rat ccagggagatcgtga---gaaaactttc-----------ttccagggggtgcggcactggggcccggtgg Naked mole-rat ccactgaggccggga---gaaaaccttc-----------tttctgggagtgcggaactggagccgggttg Guinea pig ccactgaggccagga---acaaagtttc-----------ttcctggcagtgcagaactggggccgggttg Squirrel ccactgaggccgtga---gaaaagtttt-----------tttctgggagtgtggaactggggcccggttg Rabbit ctaccgaggccgtgc---gtcaagtttc-----------tttctggaagtgcggg-acagggccgggctg Pika ctaccgaggccgtgcgaagcaaagtttc-----------tttctggaagcgcagc-ctagggccggcttg Human ccactgaggcggtgc---ggaaagtttc-----------tgtctgggagtgcggaactggggccgggttg Chimp ccactgaggcggtgc---ggaaagtttc-----------tgtcttggagtgcggaactggggccgggttg Gorilla ccactgaggcggtgc---ggaaagtttc-----------tgtctgggagtgcggaactggggccgggttg Orangutan ccgctgaggcggtgc---ggaaagtttc-----------cgtctgggagtgcggaactgggtccgggttg Gibbon ccattgaggcggtgc---ggaaagtttc-----------tgtctgggagtgcggaactggggccgggttg Rhesus ccactgaggcggtgc---ggaaagtttc-----------tgtctgggagtgcggaactggggccgggttg Baboon ccactgaggcggtgc---ggaaagtttc-----------tgtctgggagtgcggaactggggccgggttg Marmoset ccattgcggccctgc---ggaaagtttc-----------tgtctggttgtgcggaactggggccgggttg Squirrel monkey ccattgaggcagtgc---ggaaagtttc-----------tgtttggttgcgcggaactggggccgggttg Tarsier ccactaaggccgtga---gaaaagtttc-----------tttttgggagtgcggaactggggccgggttg Mouse lemur ccactgaggccgcgc---gaaaagtttc-----------cttctggcagtgcggagctggggccgggttg Bushbaby ccactgaggccacgg---taaaagtttc-----------ttcctgggagtgcggaactggggcccagttg Tree shrew ccactgaggccgtgc---gaaaagtttc-----------tttctgggagtgtggaactggagccgggttg Pig ccactgaggccacga---gaaaagtttc-----------tttctgggagtgtggagcttgggccccgttg Dolphin ccactgaggccacgc---gaaaagcttc-----------tttctgggagtgcggagctggggcccggttg Cow ccactaaggccacac---gaagagtttc-----------tttctgggagcgcggaactggggcccggttg Cat ccactgaggctgtgc---gaaaagttac-----------tttttgggagtgcggaactggggtcccgttg Dog ccactggggctgtgc---gaaaagtttc-----------tttttgggagttcggaactggggcccctttg Panda ccactgaggctgtgc---gagaagtttc-----------tttttgggagttcggaactggggccacgtta Horse ccactgaggccgtga---gaaaagtttc-----------tctctgggagtgcggaactggggcccggtcg Little brown bat acactgaggccgtgc---gaaaagtttc-----------tttctggaagctcggaactggggcccggttg Megabat ccactgaggccgtga---gaaaagtttc-----------tttctgggagcgcggaactggggcccggttg Hedgehog ccaccgaggccgcgc---agaaggtctc-----------tccctgggagcgcggagccggggcgcggcgg Shrew tcactgaggccgagc---gaaaagtttc-----------tttctgggagtgtcgaactggggccccgtgg Elephant ccactgaggccgtgc---gaaaagtatc-----------tttctgggagaacggaacaggggcccggttg Rock hyrax ccactgaggccgtgc---gtgaagttcc-----------tttctgggagaacgtgacaggggtccggctg Tenrec ccactgaggccgtgc---gaaaagtttc-----------tttctgggagaacagaactggagcccggttg Manatee ccactgaggccgtgc---gaaaagtttc-----------tttctgggagaacggaacaggcgccccgttg Armadillo ccactgcggccgtgc---gagaagtttc-----------cttctgggattgcggaactggggccctgtcg Opossum gcactaaggagatag---cgaaaatttg-----------ttcttggaattctagagt----ctcttattg Tasmanian devil gcactgaggaaatag---tcaaagttag-----------ttcttggaagtctagagt-gactgcttattg Wallaby gcactgaagaggtag---tgaaagttag-----------ttcttgggagtctggagc-ggctgttctttg Platypus tcgccgaggcgccgg---tgaaagtttcttttttctttttttttgcaagccagga----gggctccgcgg Chicken agccgg----------------gggctg-----------cggtggggatttagg----gcggccccggag Zebra finch agtcggttcccgggc----atagggat------------ccgttgggatttagg----gccggcctcgag Budgerigar agcctgtctccgggc----acgggtctc-----------cgactgggatttagg----gcagcctcagag Painted turtle agactgaatctgttg----ttaaattcc-----------cttttggaagct--------tagtctcattg Alpaca NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN Sheep NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN Fugu ====================================================================== Atlantic cod ====================================================================== Nile tilapia ====================================================================== Zebrafish ====================================================================== X. tropicalis ====================================================================== Turkey ====================================================================== Coelacanth ====================================================================== Lizard ====================================================================== Sloth NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN Mouse gtgt- Rat gtgt- Kangaroo rat gtga- Naked mole-rat gtgt- Guinea pig gtgt- Squirrel gtgt- Rabbit gtgt- Pika gggt- Human gtgt- Chimp gtgt- Gorilla gtgt- Orangutan gtgt- Gibbon gtgt- Rhesus gtgt- Baboon gtgt- Marmoset gtgt- Squirrel monkey gtgt- Tarsier gtgt- Mouse lemur gtgt- Bushbaby gtgt- Tree shrew gtgt- Pig gtgt- Dolphin gtgt- Cow gtgt- Cat gtgt- Dog gtgt- Panda gtat- Horse gtgt- Little brown bat gtgt- Megabat ttgt- Hedgehog gtgt- Shrew ctgt- Elephant gtgt- Rock hyrax gtgt- Tenrec gtgt- Manatee gtgt- Armadillo ctgt- Opossum gtgtc Tasmanian devil gtgt- Wallaby gtat- Platypus agac- Chicken gtgt- Zebra finch gtgt- Budgerigar gtgt- Painted turtle gtgt- Alpaca NNNNN Sheep NNNNN Fugu ===== Atlantic cod ===== Nile tilapia ===== Zebrafish ===== X. tropicalis ===== Turkey ===== Coelacanth ===== Lizard ===== Sloth NNNNN Alignment block 27 of 736 in window, 56695848 - 56695898, 51 bps B D Mouse actgctc-agagcaatgggtgagtggctgatggg------------------gg-acgt-tg-tc-agat B D Rat actgctc-ggagcaatgggtgagtgactg-cggg------------------gg-acgt-tg-tc-agaa B D Kangaroo rat ccggctc-ggagcaatgggtgagtggcgg-cggg------------------gg-acgc-tg-tc-aga- B D Naked mole-rat actgctc-ggagcaatgggtgagtggcga-cggg------------------gc-ccgc-tg-tc-agag B D Guinea pig gctgctc-ggagcaatgggtgagtggctg-cggg------------------gg-ctgc-tg-tc-agag B D Squirrel actgttc-ggagcaatgggtgagtggcgg-cggg------------------gg-acgc-tg-tc-agaa B D Rabbit acggctc-ggagcaatgggtgagtggctg-cggg------------------gg-ccgc-tg-tc-agag B D Pika acggctc-ggagcaatgggtgagtggctg-cggg------------------ggcccgc-tg-tcaagag B D Human actgctc-ggagcaatgggtgagtggcgg-cggg------------------gg-actc-tg-tc-agag B D Chimp actgctc-ggagcaatgggtgagtggcgg-cggg------------------ag-actc-tg-tc-agag B D Gorilla actgctc-ggagcaatgggtgagtggcgg-cggg------------------gg-accc-tg-tc-agag B D Orangutan actgctc-ggagcaatgggtgagtggcgg-cggg------------------gg-actc-tg-tc-agag B D Gibbon actgctc-ggagcaatgggtgagtggcgg-cggg------------------gg-actc-cg-tc-agag B D Rhesus actgctc-ggagcaatgggtgagtggcgg-cggg------------------gg-actc-tg-tc-agag B D Baboon actgctc-ggagcaatgggtgagtggcgg-cggg------------------gg-actc-tg-tc-agag B D Marmoset actgctc-ggagcaatgggtgagtggcgg-tgga------------------ag-a--c-tg-tc-ggag B D Squirrel monkey actgctc-ggagcaatgggtgagtggcgg-tgga------------------ag-a--c-cg-tc-ggag B D Tarsier actgctc-ggagcaatgggtgagtggcgg-cggg------------------gg-acac-tg-tc-agag B D Mouse lemur actgctc-ggagcaatgggtgagtgtcgg-cggg------------------cg-actc-tg-tc-aaag B D Bushbaby actgctc-ggagcaatgggtgagtggcgg-cggg------------------cg-actc-tg-tc-aaag B D Tree shrew actgctc-ggagcaatgggtgagtggcgg-cggg------------------gg-acgc-tg-tc-agag B D Pig actgctc-ggagcaatgggtgagtggtgg-cggg------------------gg-acgcttg-ac-agag B D Dolphin actgctc-ggagcaatgggtgagtggcgg-cggg------------------gg-acgc-tg-tc-agaa B D Cow actgctc-ggagcaatgggtgagtggcgg-cagg------------------gt-acgc-tg-tc-agag B D Cat actgctc-ggagcaatgggtgagtggcgg-cggg------------------gg-acgc-tg-tc-agag B D Dog actgctc-ggagcaatgggtgagtggcgg-cggg------------------ga-acgc-tg-tc-agag B D Panda actgctc-ggagcaatgggtgagtggcgg-cggg------------------gg-acgc-tg-tc-agag B D Horse actgctc-ggagcaatgggtgagtggcgg-cggg------------------gg-acgc-tg-tc-agag D Little brown bat gctgctc-ggagcaatgggtgagtggcgg-cggg------------------gg-acgc-tg-tc-agag B D Megabat gctgctc-ggagcaatgggtgagtggcag-cggg------------------gg-acac-tg-tc-agag B D Hedgehog cctgccc-ggagcgatgggtgagcggcgg-cgag------------------gg-cggc-tg-tc-agcg B D Shrew actgctc-ggagcaatgggtgagtggcgg-cggg------------------ga-c-gc-tg-tc-agcg B D Elephant actgctc-ggagcaatgggtgagtggcgg-cgag------------------gg-acgc-tg-tc-agag B D Rock hyrax actgctc-ggagcaatgggtgagtggcgg-cggg------------------gg-acac-tg-tc-agag B D Tenrec actgctt-ggagcaatggttgagtggcgg-cggg------------------gg-acgc-tgttc-agac B D Manatee actgctc-ggagcaatgggtgagtggcgg-cggg------------------gg-acgc-tg-tc-agag B D Armadillo gctgctc-ggagcaatgggtgagcggcgg-cggg------------------gg-acgc-tg-tc-agag B D Opossum cccgctc-aaagcaatgggtaagtggttg-cctgttgtatccgcgaaatattca-gtgc-tg-tc-agac B D Tasmanian devil cctggtc-aaaggaatgggtaagtggctg-cgtactgtaatgggaaaattttct-gttc-tg-tc-agac B D Wallaby actgctc-aaagcaatgggtaagtggttg-cgtg-taggatcggtgaattttct-gtgc-tg-tc-agaa B D Platypus cgtgctctggagctatgggtgagtgggtg-cccg------------------gg-agcg----------- B D Chicken cccgctc-ggaggaatgggtgagt-gc---tggg------------------at-ccgc----------- B D Zebra finch cccgctc-agaggaatgggtaagtggc---cggg------------------ag-ccgc----------- B D Budgerigar cccgctc-ggaggaatgggtaagtggc---cggg------------------ag-ccgc----------- B D Painted turtle cctgctc-agcgcaatgggtaagtgcc---tgga------------------ag-ctgc----------- B D Fugu actgcac-acaacagggctgcagtggctg-cgag-----------------cat-ttgt-tg-tc-aaat B D Alpaca NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN B D Sheep NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN B D Atlantic cod ====================================================================== B D Nile tilapia ====================================================================== B D Zebrafish ====================================================================== B D X. tropicalis ====================================================================== B D Turkey ====================================================================== B D Coelacanth ====================================================================== B D Lizard ====================================================================== B D Sloth NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN Mouse ccg----a Rat ccg----a Kangaroo rat ccg----a Naked mole-rat ccg----a Guinea pig ccg----g Squirrel ccg----a Rabbit cgg----c Pika cgg----c Human ccg----g Chimp ccg----g Gorilla ccg----g Orangutan ccg----g Gibbon ccg----a Rhesus ccg----g Baboon ccg----g Marmoset ccg----c Squirrel monkey ccg----c Tarsier ccg----g Mouse lemur ccg----g Bushbaby ccg----t Tree shrew cgg----a Pig cct----g Dolphin ccg----g Cow ccg----g Cat ccg----g Dog ccg----g Panda ccgggaag Horse tcg----g Little brown bat tcg----g Megabat ccg----g Hedgehog cc------ Shrew ccg----g Elephant ccg----g Rock hyrax ccg----g Tenrec ccg----g Manatee cc------ Armadillo ccc----g Opossum tgg----g Tasmanian devil tgg----g Wallaby tgg----g Platypus -------- Chicken -------- Zebra finch -------- Budgerigar -------- Painted turtle -------- Fugu aca----a Alpaca NNNNNNNN Sheep NNNNNNNN Atlantic cod ======== Nile tilapia ======== Zebrafish ======== X. tropicalis ======== Turkey ======== Coelacanth ======== Lizard ======== Sloth NNNNNNNN Inserts between block 27 and 28 in window B D Pig 4bp B D Dolphin 4bp B D Cow 4bp B D Cat 4bp B D Dog 4bp B D Panda 4bp B D Horse 4bp D Little brown bat 6bp B D Megabat 4bp B D Hedgehog 1bp B D Shrew 4bp B D Elephant 11bp B D Rock hyrax 3bp B D Tenrec 4bp B D Armadillo 4bp B D Opossum 3bp B D Tasmanian devil 2bp B D Wallaby 2bp Alignment block 28 of 736 in window, 56695899 - 56695904, 6 bps B D Mouse -ggaggg B D Rat -ggaggg B D Kangaroo rat -gcgggg B D Naked mole-rat -gaaggg B D Guinea pig -agaggg B D Squirrel -gaaggg B D Rabbit -ggcgg- B D Pika -ggaggg B D Human -gaaggg B D Chimp -gaaggg B D Gorilla -gaaggg B D Orangutan -gaaggg B D Gibbon -gaaggg B D Rhesus -gaaggg B D Baboon -gaaggg B D Marmoset -gaaggg B D Squirrel monkey -gaaggg B D Tarsier -caaggg B D Mouse lemur -gaaagg B D Bushbaby -gaaggg B D Tree shrew -gaa-gg B D Pig -ggaggg B D Dolphin -ggaggg B D Sheep -ggaggg B D Cow -ggaggg B D Cat -ggaggg B D Dog -ggaggg B D Panda -ggaggg B D Horse -ggaggg D Little brown bat -ggaggg B D Megabat -ggaggg B D Hedgehog -ggcggg B D Shrew -ggaggg B D Elephant -ggaggg B D Rock hyrax -ggaggg B D Tenrec -ggaggg B D Manatee -ggaggg B D Armadillo -ggaggg B D Opossum -ggggaa B D Tasmanian devil -ggagga B D Wallaby -ggagga B D Platypus -gggggc B D Chicken ----ggg B D Zebra finch ----agg B D Budgerigar ----agg B D Painted turtle ----agg B D Fugu acaagg- B D Alpaca NNNNNNN B D Atlantic cod ======= B D Nile tilapia ======= B D Zebrafish ======= B D X. tropicalis ======= B D Turkey ======= B D Coelacanth ======= B D Lizard ======= B D Sloth NNNNNNN Inserts between block 28 and 29 in window B D Rabbit 1bp Alignment block 29 of 736 in window, 56695905 - 56695910, 6 bps B D Mouse agggag B D Rat agggag B D Kangaroo rat cgggag B D Naked mole-rat agggag B D Guinea pig agggag B D Squirrel agggag B D Pika agggag B D Human agggag B D Chimp agggag B D Gorilla agggag B D Orangutan agggag B D Gibbon agggag B D Rhesus agggag B D Baboon agggag B D Marmoset agggag B D Squirrel monkey agggag B D Tarsier agggcg B D Mouse lemur agggag B D Bushbaby agggag B D Tree shrew agggag B D Pig agggag B D Dolphin agggag B D Sheep agggag B D Cow agggag B D Cat agggaa B D Dog agggaa B D Panda agggaa B D Horse agggag D Little brown bat agggag B D Megabat agggag B D Hedgehog agggag B D Shrew agggag B D Elephant agggag B D Rock hyrax agggag B D Tenrec agggag B D Manatee agggag B D Armadillo cgggcg B D Opossum aaag-- B D Tasmanian devil caag-- B D Wallaby taag-- B D Platypus aggggc B D Chicken gg---- B D Zebra finch agg--- B D Budgerigar agg--- B D Painted turtle agg--- B D Stickleback agaaaa B D Rabbit ====== B D Alpaca NNNNNN B D Fugu ------ B D Atlantic cod ====== B D Nile tilapia ====== B D Zebrafish ====== B D X. tropicalis ====== B D Turkey ====== B D Coelacanth ====== B D Lizard ====== B D Sloth NNNNNN Inserts between block 29 and 30 in window B D Naked mole-rat 4bp B D Guinea pig 4bp B D Squirrel 8bp B D Pika 4bp B D Human 4bp B D Chimp 4bp B D Gorilla 4bp B D Orangutan 4bp B D Gibbon 4bp B D Rhesus 4bp B D Baboon 4bp B D Marmoset 4bp B D Squirrel monkey 4bp B D Tarsier 4bp B D Mouse lemur 4bp B D Bushbaby 4bp B D Tree shrew 4bp B D Elephant 12bp B D Rock hyrax 12bp B D Tenrec 7bp B D Manatee 8bp B D Armadillo 6bp B D Platypus 8bp Alignment block 30 of 736 in window, 56695911 - 56695938, 28 bps B D Mouse ------cg----------agcaggc--------------------g--------aggg------------ B D Rat ------cg----------agcaggc--------------------g--------aggg------------ B D Naked mole-rat ------cg----------ggcgggc--------------------c--------ggcg------------ B D Guinea pig ------cg----------agcgggc--------------------g--------ggcg------------ B D Squirrel ------cg----------agcgggc--------------------g--------aggg------------ B D Rabbit ------cg----------ggcgttc--------------------c--------gctg------------ B D Pika ------cg----------ggcgggc--------------------c--------aggg------------ B D Human ------cg----------agcgggc--------------------aaggg----aggg------------ B D Chimp ------cg----------agcgggc--------------------a--------aggg------------ B D Gorilla ------cg----------agcgggc--------------------a--------aggg------------ B D Orangutan ------cg----------agcgggc--------------------a--------aggg------------ B D Gibbon ------cg----------agcgggc--------------------a--------aggg------------ B D Rhesus ------cg----------agcgggc--------------------g--------agga------------ B D Baboon ------cg----------aacgggc--------------------g--------agggagggagnnnnnn B D Marmoset ------cg----------agcgaga--------------------g--------aggg------------ B D Squirrel monkey ------cg----------agcggga--------------------g--------aggg------------ B D Tarsier ------cg----------ggcgtgc--------------------g--------tgcg------------ B D Mouse lemur ------ag----------agcaggc--------------------g--------aggg------------ B D Bushbaby ------cg----------agcgggc--------------------g--------aggg------------ B D Tree shrew ------cg----------agcggga--------------------g--------aggg------------ B D Pig ------ca----------agcgggc--------------------g--------aggg------------ B D Dolphin ------cg----------agcgggc--------------------g--------aggg------------ B D Sheep ------cg----------agcgggc--------------------g--------aggg------------ B D Cow ------cg----------agcgggc--------------------g--------aggg------------ B D Cat ------cc----------acagggt--------------------g--------aggg------------ B D Dog ------gg----------agaaggc--------------------g--------aggg------------ B D Panda ------ag----------agagggc--------------------g--------aggg------------ B D Horse ------cg----------agctggc--------------------g--------aggg------------ D Little brown bat ------caagag----agagagaga--------------------g--------agag------------ B D Megabat ------cc----------agcgggc--------------------t--------agag------------ B D Hedgehog ------gg----------agcgggc--------------------g--------ggag------------ B D Shrew ------ag----------agcgggc--------------------g--------aggg------------ B D Elephant ------cg----------agcgagcgggcgggcgggcgggcgcggg--------aggg------------ B D Rock hyrax ------cc----------agcgagc------gcgagcgggagcggg--------aggg------------ B D Tenrec ------ct----------cgcgaga-----------------------------aagg------------ B D Manatee ------cg----------agcgaga------------cggcgcggg--------aggg------------ B D Armadillo ------------------agcgggc--------------------g--------aggg------------ B D Opossum -----------------tggcgggg--------------------g--------gtgg------------ B D Tasmanian devil -----------------tggcagag--------------------g--------agaa------------ B D Wallaby -----------------tggcgggg--------------------ggggggggaagag------------ B D Platypus ------cg----------ggctgtc--------------------a--------gaga------------ B D Chicken -------------------gctgtc--------------------a--------agag------------ B D Zebra finch -----------gttcaagtgctgtc--------------------a--------agag------------ B D Budgerigar -----------gttcaagtgctgtc--------------------a--------agag------------ B D Painted turtle -----------gttcaagggctgtc--------------------a--------aaag------------ B D Fugu ----ggtg----------ggtgggc--------------------a--------ggaa------------ B D Stickleback taaagaag----------tgcgagc--------------------g--------ggag------------ B D Alpaca NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN B D Atlantic cod ====================================================================== B D Nile tilapia ====================================================================== B D Zebrafish ====================================================================== B D X. tropicalis ====================================================================== B D Turkey ====================================================================== B D Coelacanth ====================================================================== B D Lizard ====================================================================== B D Sloth NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN B D Kangaroo rat NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN Mouse -------------------------------------------------------ctagag-ggagg-ga Rat -------------------------------------------------------ctagag-ggagg-ga Naked mole-rat -------------------------------------------------------agggag-ggag---- Guinea pig -------------------------------------------------------cgcgag-ggcgc-gc Squirrel -------------------------------------------------------agggag-ggagg-ga Rabbit -------------------------------------------------------attgac-tttgc-tc Pika -------------------------------------------------------cgggag-ggcgc-cc Human -------------------------------------------------------agggag-ggagg-ga Chimp -------------------------------------------------------agggag-ggagg-ga Gorilla -------------------------------------------------------agggag-ggagg-ga Orangutan -------------------------------------------------------agggag-ggagg-ga Gibbon -------------------------------------------------------agggag-ggagg-ga Rhesus ---------------------------------------------------------------------- Baboon nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngcgagggagggagggag-ggagg-ga Marmoset -------------------------------------------------------agggag-ggagg-ga Squirrel monkey -------------------------------------------------------agggag-ggagg-ga Tarsier -------------------------------------------------------ggcggg-cgagg-ga Mouse lemur -----------------------------------------------------------ag-ggagg-ga Bushbaby -----------------------------------------------------------ag-ggagg-gc Tree shrew -----------------------------------------------------------ag-ggagg-ga Pig -------------------------------------------------------agggag-g------- Dolphin -------------------------------------------------------agggag-ggagg-gc Sheep -------------------------------------------------------agggag-g------- Cow -------------------------------------------------------agggag-g------- Cat -------------------------------------------------------agggag-ggagg-ga Dog -------------------------------------------------------agggag-ggagg-ga Panda -------------------------------------------------------agggcg-ggagg-ga Horse -------------------------------------------------------a----g-ggagg-ga Little brown bat -------------------------------------------------------agggag-ggaaa-ga Megabat -------------------------------------------------------agggag-ggaga-ga Hedgehog -------------------------------------------------------gcggag-gg------ Shrew -------------------------------------------------------agggag-gg-----a Elephant -------------------------------------------------------agggag-ggctc-gg Rock hyrax -------------------------------------------------------agggag-ggcgc-gg Tenrec -------------------------------------------------------agggag-ggcgcggg Manatee -------------------------------------------------------agggag-ggcgc-gg Armadillo -------------------------------------------------------aggga--------gg Opossum -------------------------------------------------------ggggga-ggag---- Tasmanian devil -------------------------------------------------------agagag-agag---- Wallaby -------------------------------------------------------agagag-agag---- Platypus -------------------------------------------------------ggaaag-agggg--- Chicken -------------------------------------------------------agaggg-ag------ Zebra finch -------------------------------------------------------aggggg-ag------ Budgerigar -------------------------------------------------------agggggaag------ Painted turtle -------------------------------------------------------agag---ag------ Fugu -------------------------------------------------------agaggg-gg------ Stickleback -------------------------------------------------------ggagtg-ac------ Alpaca NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN Atlantic cod ====================================================================== Nile tilapia ====================================================================== Zebrafish ====================================================================== X. tropicalis ====================================================================== Turkey ====================================================================== Coelacanth ====================================================================== Lizard ====================================================================== Sloth NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN Kangaroo rat NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN Mouse --g Rat --g Naked mole-rat --- Guinea pig --t Squirrel gtg Rabbit --g Pika --g Human gcg Chimp gcg Gorilla gcg Orangutan gct Gibbon gcg Rhesus --- Baboon gtg Marmoset gcg Squirrel monkey gcg Tarsier ggg Mouse lemur gcg Bushbaby gcg Tree shrew gcg Pig --- Dolphin gcg Sheep --- Cow --- Cat gag Dog gcg Panda gcg Horse gcg Little brown bat gcg Megabat gcg Hedgehog --- Shrew gcg Elephant gcg Rock hyrax gcg Tenrec gcg Manatee gca Armadillo gag Opossum --- Tasmanian devil --- Wallaby --- Platypus --- Chicken --- Zebra finch --- Budgerigar --- Painted turtle --- Fugu --- Stickleback --- Alpaca NNN Atlantic cod === Nile tilapia === Zebrafish === X. tropicalis === Turkey === Coelacanth === Lizard === Sloth NNN Kangaroo rat NNN Inserts between block 30 and 31 in window B D Opossum 718bp B D Tasmanian devil 396bp B D Wallaby 63bp B D Platypus 1bp B D Chicken 7bp B D Zebra finch 8bp B D Budgerigar 8bp B D Painted turtle 8bp Alignment block 31 of 736 in window, 56695939 - 56695959, 21 bps B D Mouse ctga----g--gcgc--gc--cac--------------cg------------c-gc--tg-- B D Rat ctga----g--gcgc--gc--cac--------------cg------------c-gc--tc-- B D Naked mole-rat --------g--gagc--gca-cac--------------gg------------c-cccgcg-- B D Guinea pig cgga----g--gagc--gcg-ctc--------------gg------------c-tc--cg-- B D Squirrel cgag----g--gcgc--gcgccac--------------tgagcgctcacactc-tc--ct-- B D Rabbit ---------------------------------------g------------t-ta--c--- B D Pika caga----g--gcgc------ccc--------------cg------------c-tc--c--- B D Human cgag----g--gcgc--gcgccact----agg------cg------------c-tc------ B D Chimp cgag----g--gcgc--gcgccact----agg------cg------------c-tc------ B D Gorilla cgag----g--gcgc--gcgccact----aag------cg------------c-tc------ B D Orangutan cgag----g--gcgc--gcgccact----aag------cg------------c-tc------ B D Gibbon cgag----g--gcgc--gcgccact----aag------cg------------c-tc------ B D Baboon cga-----g--gcgc--gcgccact----aag------cg------------c-tc------ B D Marmoset agag----g--gcgc--gcgccact----aag------cg------------c-tc------ B D Squirrel monkey cgag----g--gcgc--gcgcccct----aag------cg------------c-tc------ B D Tarsier agga----a--ttcc--ac------------------------------------c------ B D Mouse lemur caa-----g--gcgc--gcgccact----aag------cg------------t-tc------ B D Bushbaby caag----g--gcgc--gcgccact----aag------gg------------c-tc------ B D Tree shrew cgag----g--gcgc--gcgccacc----gag------cg------------c-tc------ B D Pig -gag----g--gcac--gcagcaca----gag------cg------------c-tt------ B D Dolphin cgag----g--gcgc--gcaccact----gag------cg------------c-tt------ B D Sheep -gag----g--gcgc--gcaccact----gag------cg------------c-tc------ B D Cow -gag----g--gcgc--gcaccact----gag------cg------------c-tc------ B D Cat cgag----g--gcgc--gcaccact----gag------cg------------c-tc------ B D Dog cgag----g--gcgc--gcaccgct----gag------cg------------c-tc------ B D Panda cgag----g--gcgc--gcaccact----gag------cg------------t-tc------ B D Horse cgag----g--gcgc--gcactact----gag------cg------------c-tc------ D Little brown bat cgag----g--gcgc--gcacccct----gag------cg------------c-tc------ B D Megabat cgag----g--gcgc--gcaccttt----gag------cg------------c-tc------ B D Hedgehog --ag----g--gcgc--gcacccct----gag------cg------------c-tc------ B D Shrew ccag----g--gcgc--gcaccact----gag------cg------------c-tc------ B D Elephant cgag----g--gcgc--gcaccact----gag------cg------------c-tc------ B D Rock hyrax cgag----g--gcgc--gcacccct----gag------cg------------c-tc------ B D Tenrec cgag----g--gc-t--gcgtcgctcatgggg------cg------------cttc------ B D Manatee cgag----g--gcgc--gcaccact----gag------cg------------c-tc------ B D Armadillo cgag----g--gcgc--gcaccgct----gag------cg------------c-tc------ B D Wallaby --at----a--ctgg--gagtcaca----act------tg------------c-tt------ B D Platypus cggg----c--gagccagcgcagct----ggc------tg---------------------- B D Chicken cccgcgccg--tcat--gtgccacc----gcggc----tc------------c-t------- B D Zebra finch ctca----g--tcat--ctgccacc----gccgcggctcc------------c-t------- B D Budgerigar cgcc----g--tcat--gagccgcc----gcctcagctcc------------c-t------- B D Painted turtle tgag----a--tcat--gtgcagcc----gcaat---ttg------------c-t------- B D Fugu --ga----gaactac--ttgtcacttttaata------tg------------t-ta----ag B D Stickleback --cg----g--ctgc--gtcccgc--------------cg------------c-tt----gg B D Rhesus -------------------------------------------------------------- B D Alpaca NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN B D Atlantic cod ============================================================== B D Nile tilapia ============================================================== B D Zebrafish ============================================================== B D X. tropicalis ============================================================== B D Turkey ============================================================== B D Coelacanth ============================================================== B D Tasmanian devil ============================================================== B D Opossum ============================================================== B D Lizard ============================================================== B D Sloth NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN B D Kangaroo rat NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN Inserts between block 31 and 32 in window B D Human 8bp B D Chimp 8bp B D Gorilla 8bp B D Orangutan 8bp B D Gibbon 8bp B D Baboon 8bp B D Marmoset 8bp B D Squirrel monkey 8bp B D Mouse lemur 10bp B D Bushbaby 10bp B D Tree shrew 10bp B D Pig 10bp B D Dolphin 10bp B D Sheep 10bp B D Cow 10bp B D Cat 10bp B D Dog 10bp B D Panda 10bp B D Horse 10bp D Little brown bat 10bp B D Megabat 10bp B D Hedgehog 10bp B D Shrew 10bp B D Elephant 10bp B D Rock hyrax 10bp B D Tenrec 11bp B D Manatee 10bp B D Armadillo 10bp Alignment block 32 of 736 in window, 56695960 - 56695995, 36 bps B D Mouse ta-------ttgactcag-actg-cgtcc-gt-c--gagctgt-aagcac------------------- B D Rat ta-------ttgactcag-accg-cgtcc-ctac--gagttgt-atgcac------------------- B D Naked mole-rat tg-------ctgagtttg-ctct-cgttc-ctac--aagttgt-aggagc------------------- B D Guinea pig tg-------ttgactttg-ctct-tgttc-ctac--aagttga-aggaac------------------- B D Squirrel ta-------ttgactttg-ctcg-tgttc-ctac--aagttgt-aggaac------------------- B D Rabbit tg-------ctggg--------------------------tgt-aggact------------------- B D Pika cg-------ctgag-------------------------------ggact------------------- B D Human ta-------ttgactttg-ctcg-tgttc-ctac--aagttgt-aggaac------------------- B D Chimp ta-------ttgactttg-ctcg-tgttc-ctac--aagttgt-agaaac------------------- B D Gorilla ta-------ttgactttg-ctcg-tgttc-ctac--aagttgt-aggaac------------------- B D Orangutan ta-------ttgactttg-ctcg-tgttc-ctac--aagttgt-aggaac------------------- B D Gibbon ta-------ttgactttg-ctcg-tgttc-ctac--aagttgt-aggaac------------------- B D Rhesus ---------------------------tc-ctac--aagttgt-aggaac------------------- B D Baboon ta-------ttgactttg-ctcg-tgttc-ctac--aagttgt-aggaac------------------- B D Marmoset ta-------ttgactttg-ctcg-tgttc-ctac--aagttgt-aggaac------------------- B D Squirrel monkey ta-------ttgactttg-ctcg-tgttc-ctac--aagttgt-aggaac------------------- B D Mouse lemur ta-------ttgactttg-ctcg-tgttc-ctac--aagttgt-atgaac------------------- B D Bushbaby ta-------ttgactttg-ctcg-tgttc-ctac--aagttgt-aggaac------------------- B D Tree shrew ta-------ttgactttg-ctcg-tgttc-gtac--aagttgt-aggaac------------------- B D Pig ta-------ttgactttg-ttca-tgttc-ctac--aagttgt-aggaac------------------- B D Dolphin ta-------ttgactttg-ctcg-tgttc-ctac--aacttgt-aggaac------------------- B D Sheep ta-------ttgactttg-ctcg-tgttc-ctac--aagttgt-gggaac------------------- B D Cow ta-------ttgactttg-ctca-tgttc-ctac--aagttgt-aggaac------------------- B D Cat ta-------ttgactttg-ctcg-tgttt-ctac--aagttgttaggaac------------------- B D Dog ta-------ttgactttg-ctcg-tgttc-ctac--aagttgttaggaac------------------- B D Panda ta-------ttgactttg-cccg-tgttc-ctac--aagttgttagaaac------------------- B D Horse ta-------ttgactttg-ctcg-tgttc-atac--aagttgt--aggac------------------- D Little brown bat ta-------ttgactttg-ctcg-tgttc-ctac--aacttgt-aggaac------------------- B D Megabat ta-------ttgactttt-ctcc-tgttc-ctac--aacttgt-aggaac------------------- B D Hedgehog ta-------ttgactttg-ctcg-tgttc-ctac--acgttgt-agcaac------------------- B D Shrew ta-------ttgactttg-ctcg-tgttc-ctac--aagttgt-aggaac------------------- B D Elephant ta-------ttgactttg-ttcg-tgttc-ctac--aaatagt-aggaac------------------- B D Rock hyrax tg-------ttgactttg-ctcg-tgttc-ctac--aagtagt-gggaac------------------- B D Tenrec ta-------tggactttgcctcg-agtct-ctttcaaagttgt-gggtac------------------- B D Manatee ta-------tagactttg-ttcg-ttttc-ctac--aagtagt-aggaac------------------- B D Armadillo ta-------ttgactttg-ctcg-tgttt-ctac--acgttgt-aggaac------------------- B D Tasmanian devil ta-------ttgactttg-cttg-tatttcctac--acgttat-aacaat------------------- B D Wallaby -t-------ttgactttg-ctcg-tgttt-ctac--aagttgt-aacaat------------------- B D Platypus -g-------ttgagtttg-ttcg-tgttc-ttcc--gagttgttagggac------------------- B D Chicken ta-------ttgacttta-ctcg-tgttt-ctac--acgtcgg-gacagc------------------- B D Zebra finch ta-------ttgactttg-ctcg-tgttc-ctac--aagttgt-aagaac------------------- B D Budgerigar ta-------ttgactttg-ctcg-tgttc-gtac--aagttgt-aagaac------------------- B D Painted turtle ta-------ttgactttg-ttcg-tgttc-ctac--aagttgt-aggaac------------------- B D Fugu aatccaggcgcgccctcg-tttg-tgtgg-ccgc--gcgtagcccctggccaccttaaaacgaagtctc B D Stickleback aa-------gcagctcag-tttgatttca-caga--gcgagaccgttgact--------------tcac B D Alpaca NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN B D Atlantic cod ===================================================================== B D Nile tilapia ===================================================================== B D Zebrafish ===================================================================== B D X. tropicalis ===================================================================== B D Turkey ===================================================================== B D Coelacanth ===================================================================== B D Opossum ===================================================================== B D Lizard ===================================================================== B D Sloth NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN B D Kangaroo rat NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN Inserts between block 32 and 33 in window B D Mouse lemur 295bp Alignment block 33 of 736 in window, 56695996 - 56696011, 16 bps B D Mouse cctc---caagggtcagt-g B D Rat acgc---caagggtcagc-g B D Naked mole-rat aggc---taaggggcagc-g B D Guinea pig tggc---caagggtcaga-g B D Squirrel acgc---taagggtcagc-g B D Rabbit gcgc---caagggccagc-g B D Pika tggg---tgggttcctac-c B D Human acgc---taagggtcagc-g B D Chimp acgc---taagggtcagc-g B D Gorilla acgc---taagggtcagc-g B D Orangutan acgc---taagggtcagc-g B D Gibbon acgc---taagggtcagc-g B D Rhesus acgc---taagggtcagc-g B D Baboon acgc---taagggtcagc-g B D Marmoset acgc---taagggtcagc-g B D Squirrel monkey acgc---taagggtcagc-g B D Bushbaby acgc---taagggtcaac-g B D Tree shrew acgc---tgagggtcagc-g B D Pig actc---taagggtcagc-g B D Dolphin acgc---taagggtcagc-g B D Sheep acgc---taagggtcagc-g B D Cow acgc---taagggtcagc-g B D Cat acgc---taagggtcag--g B D Dog gcgc---taagggtcag--g B D Panda acgc---taagggtcag--g B D Horse ccgc---taagggtcggc-g D Little brown bat atgc---taagggtcaga-g B D Megabat acgc---taagggtcaga-g B D Hedgehog acgc---caagggtcagc-g B D Shrew acgc---taagggtcagt-g B D Elephant gctc---taagggtcagc-g B D Rock hyrax attc---gaagggtcagc-g B D Tenrec cacccgtaaggggtcagctg B D Manatee actg---taagggtgagc-g B D Armadillo tcgc---tgagggtcagc-g B D Tasmanian devil aagt---taaaagtcaat-a B D Wallaby gagt---taaaggtcagt-a B D Platypus acgt---tgagggtccgt-a B D Chicken gcgc---cgaggggca-g-a B D Zebra finch atgt---tgagggccagg-a B D Budgerigar acgt---taagggtcagg-a B D Painted turtle atgt---taagggtcagc-a B D Fugu cctc---cgagggtaaac-g B D Stickleback actt---catgt-------- B D Alpaca NNNNNNNNNNNNNNNNNNNN B D Atlantic cod ==================== B D Nile tilapia ==================== B D Zebrafish ==================== B D X. tropicalis ==================== B D Turkey ==================== B D Coelacanth ==================== B D Opossum ==================== B D Lizard ==================== B D Sloth NNNNNNNNNNNNNNNNNNNN B D Mouse lemur ==================== B D Kangaroo rat NNNNNNNNNNNNNNNNNNNN Alignment block 34 of 736 in window, 56696012 - 56696014, 3 bps B D Mouse gcg B D Rat gct B D Naked mole-rat gcg B D Guinea pig gct B D Squirrel acg B D Rabbit gcg B D Pika acg B D Human gcg B D Chimp gcg B D Gorilla gcg B D Orangutan gcg B D Gibbon gcg B D Rhesus gcg B D Baboon gcg B D Marmoset gcg B D Squirrel monkey gcg B D Bushbaby gcg B D Tree shrew gcg B D Pig gcg B D Dolphin acg B D Sheep gct B D Cow gct B D Cat gcg B D Dog gcg B D Panda gca B D Horse tcg D Little brown bat gcg B D Megabat gct B D Hedgehog gcg B D Shrew gcg B D Elephant gtg B D Rock hyrax gtg B D Tenrec gtg B D Manatee gtg B D Armadillo gcg B D Tasmanian devil ata B D Wallaby gta B D Platypus gcg B D Chicken gcg B D Zebra finch gca B D Budgerigar aca B D Painted turtle gca B D Stickleback gtg B D Alpaca NNN B D Fugu === B D Atlantic cod === B D Nile tilapia === B D Zebrafish === B D X. tropicalis === B D Turkey === B D Coelacanth === B D Opossum === B D Lizard === B D Sloth NNN B D Mouse lemur === B D Kangaroo rat NNN Inserts between block 34 and 35 in window B D Pig 1bp B D Dolphin 1bp B D Sheep 1bp B D Cow 1bp B D Cat 1bp B D Dog 1bp B D Panda 1bp B D Horse 1bp D Little brown bat 1bp B D Megabat 1bp B D Shrew 1bp Alignment block 35 of 736 in window, 56696015 - 56696065, 51 bps B D Mouse gaaag-g-gttctgtg--a----------ga--------gc----ca--------ct----gggt---g- B D Rat aaaag-g-gtgctgtg--g----------ga--------gc----ta--------cc----gagt---g- B D Naked mole-rat cgcagca-gttcaatc--t----------gaac-tctg-gc----ta--------ct----gggt---t- B D Guinea pig tgcggtg-gttccgtg--c----------gaac-gctg-gc----ta--------ct----gggt---t- B D Squirrel cacagca-gttcaatc--c----------gaac-gctg-gc----ta--------ct----gggt---t- B D Rabbit cacggcg-gtccggtg--t----------gcgc-gccg-gc----tg--------ct----gggc---t- B D Pika cgtcccg-ggac------t----------gcgc-gcct-gc----ta--------cc----gggg---tg B D Human cacagca-gttcaatg--t----------gaac-gctg-gc----ta--------ct----gggt---g- B D Chimp cacagca-gttcaatg--t----------gaac-gctg-gc----ta--------ct----gggt---g- B D Gorilla cacagca-gttcaatg--t----------gaac-gctg-gc----ta--------ct----gggt---g- B D Orangutan cacagca-gttcaatg--t----------gaac-gctg-gc----ta--------ct----gggc---g- B D Gibbon cacagca-gttcactg--t----------gaac-gctg-gc----ta--------ct----ggga---g- B D Rhesus cacagca-gttcaacg--t----------gaac-gctg-gc----ta--------ct----gggt---g- B D Baboon cacagca-gttcaacg--t----------gaac-gctg-gc----ta--------ct----gggt---g- B D Marmoset cacagga-gttcaatg--t----------gaac-gctg-gc----ta--------ct----ggct---g- B D Squirrel monkey cacagca-gttcaatg--t----------gaac-gctg-gc----ta--------ct----ggct---g- B D Bushbaby catagca-gttcagtc--t----------gaat-actg-gc----ta--------ct----gggt---c- B