Multiz Alignments of 100 Vertebrates

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Capitalize exons based on show bases

Place cursor over species for alignment detail. Click on 'B' to link to browser for aligned species, click on 'D' to get DNA for aligned species.
Alignment block 1 of 530 in window, 25160454 - 25160463, 10 bps B D Human taaggtccca B D Chimp taaagtccca B D Gorilla taaggtccca B D Orangutan taaggtccca B D Gibbon taaggtccca B D Rhesus taaggtccta B D Crab-eating macaque taaggtccta B D Baboon taaggtccta B D Green monkey taaggtccta B D Marmoset taaggtcaca B D Squirrel monkey taaggtcaca B D Bushbaby tatggtcaca Chinese tree shrew taatgtcaca B D Squirrel taaggtcaca Lesser Egyptian jerboa acagata--- Prairie vole tgaggtcaca B D Chinese hamster tgaggtcaca Golden hamster tgaggtca-- B D Mouse tggggtcaca B D Rat tgagattgga B D Naked mole-rat ----gtc--- Chinchilla ---agcc--- Brush-tailed rat ---agtc--- B D Pika tg-ggccaca B D Pig taaggtccca B D Alpaca taaggcccca Bactrian camel taaggcccca B D Dolphin caaggtcc-- Killer whale caaggtcc-- Tibetan antelope taagttctca B D Cow taagttctca B D Sheep caagttctca Domestic goat caagttctca B D Horse taaggtcac- B D White rhinoceros taaggtcac- B D Cat tgaggtcaca B D Dog taaggtcaca B D Ferret caaggtcaca B D Panda taaggtcata Pacific walrus taaggtcaca Weddell seal taaggtcaca Black flying-fox taaggtcaca B D Megabat taaggtcaca Big brown bat taaggcggca David's myotis (bat) taaggtcgca D Little brown bat taaggtcgca B D Hedgehog tagggtcaca Star-nosed mole tcaggtcaca B D Elephant aaaggtcaca Cape elephant shrew caaggtcaca B D Manatee taaggtcaca Cape golden mole taa----aca Aardvark tgaggtcaca B D Armadillo caaggtcata B D Shrew ========== Zebra mbuna ========== Pundamilia nyererei ========== Burton's mouthbreeder ========== Princess of Burundi ========== B D Nile tilapia ========== D Peregrine falcon ========== D Saker falcon ========== Mexican tetra (cavefish) ========== Spotted gar ========== B D Coelacanth ========== B D Zebrafish ========== B D Budgerigar ========== D Rock pigeon ========== Southern platyfish ========== B D Medaka ========== D Mallard duck ========== B D Tetraodon ========== D Chinese softshell turtle ========== Yellowbelly pufferfish ========== B D Fugu ========== B D Chicken ========== B D Turkey ========== B D X. tropicalis ========== D Painted turtle ========== B D Atlantic cod ========== B D American alligator ========== B D Lizard ========== B D Stickleback ========== B D Guinea pig ========== B D Wallaby NNNNNNNNNN B D Tasmanian devil ========== B D Platypus ========== D Green seaturtle ========== B D Rabbit ========== B D Opossum ========== B D Tenrec ========== Inserts between block 1 and 2 in window Prairie vole 18bp B D Chinese hamster 28bp Golden hamster 30bp B D Mouse 41bp B D Rat 41bp Alignment block 2 of 530 in window, 25160464 - 25160501, 38 bps B D Human tggatt----gctacgag------------------------ca-------------g-ttccccgg--- B D Chimp cggatt----gctacgag------------------------ca-------------g-ttccccgg--- B D Gorilla tggatt----gctacgag------------------------ca-------------g-ttccccgc--- B D Orangutan tggatt----gcaaggag--cag-t----------caggactca-------------g-ttccccag--- B D Gibbon tggatt----gctagaag--cag-t----------caggactca-------------g-ttccccgg--- B D Rhesus tggatt----gccaggag--cag-t----------caggactca-------------g-atccccgg--- B D Crab-eating macaque tggatt----gccaggag--cag-t----------caggactca-------------g-ttccccgg--- B D Baboon tggatt----gtcaggag--cag-t----------caggactca-------------g-ttccccgg--- B D Green monkey tggatt----gccaggag--cag-t----------caggactca-------------g-ttccccgg--- B D Marmoset tggatt----gctaggag--cag-t----------gaggactca-------------g-ttccgcgg--- B D Squirrel monkey tggatt----gctaggag--cag-t----------gaggact---------------g-tttcccgg--- B D Bushbaby tcaatt----gctaaaaggacag-t----------gaggactta-------------g-atcaaagg--- Chinese tree shrew ca--------gctacaag--cag-t----------cagaattca-------------g-acccggcg--- B D Squirrel caagta----gcaaagggcacag-t----------ca----ccg-------------a------------ Lesser Egyptian jerboa -----------tgaagagcatag-g----------ca------g-------------g------------ B D Naked mole-rat taggta----gcgaa-----cag-c----------caggactca-------------g------------ Chinchilla tggata----gcaaagcgcacgg-t----------caaaactca-------------g------------ Brush-tailed rat tggata----gtgaagagctcag-c----------cagcaccca-------------g------------ B D Pika ----------------ggcactg-c----------cg-----cg-------------g------------ B D Pig --------------------ca--a----------taa---cta-------------g-atccaggg--- B D Alpaca --------------------cag-a----------tag---cta-------------gaagccatatggg Bactrian camel --------------------cag-a----------tag---cta-------------gaagccatatggg B D Dolphin --------------------cag-a----------tgg---cta-------------g-attcacgg--- Killer whale --------------------cag-a----------tgg---cta-------------g-attcacgg--- Tibetan antelope --------------------cag-a----------ctg---cta-------------g-atccacat--- B D Cow --------------------cag-a----------ctg---cta-------------g-atccacgt--- B D Sheep --------------------cag-a----------ctg---cta-------------g-atccacat--- Domestic goat --------------------cag-a----------ctg---cta-------------g-atccacat--- B D Horse ---------------------ag-a----------tag---cta-----------cag-atgcaggg--- B D White rhinoceros ---------------------ag-a----------tag---cta-----------cgg-ctacaggg--- B D Cat --------------------cag-c----------tag---cta-------------g-atccaggg--- B D Dog --------------------gag-a----------cag---cta-------------g-agccaggg--- B D Ferret --------------------cag-a----------tag---ctg-------------g-attcagag--- B D Panda --------------------cag-a----------tag---cta-------------g-attcaggg--- Pacific walrus --------------------cag-a----------aag---cca-------------g-attcaggg--- Weddell seal --------------------cag-a----------aag---cca-------------g-attcgggg--- Black flying-fox --------------------cgc-a----------taa---cta-------------g-atccaggg--- B D Megabat --------------------tgc-a----------tag---cta-------------g-atccaggg--- Big brown bat --------------------cag-a----------tag---cta-------------g-atcca-gg--- David's myotis (bat) --------------------cag-g----------tag---ctg-------------g-atcca-gg--- D Little brown bat --------------------cag-g----------tag---ctg-------------g-atcca-gg--- B D Hedgehog --------------------cat-cctaggcacagctt---ccatccaaattagactg-gctcttgg--- Star-nosed mole --------------------cag-c----------ttc---ccat----------ctg-gtcc------- B D Elephant cacgtg----gtcctgag--catta----------ccggactgt-------------g-atccaggg--- Cape elephant shrew ca-----------------------------------ggcctgt-------------g-atccaggg--- B D Manatee cgcata----gtcctgag--cacaa----------cgggactgc-------------g-atccagg---- Cape golden mole tg----------------------a----------caggactgt-------------g-atctggga--- Aardvark cacata----gtcctgtg--catga----------caggactgt-------------g-atccggga--- B D Armadillo cagctagctggtcatgag--cag-t----------caggactca-------------g-acccagaa--- Golden hamster ====================================================================== B D Rat ====================================================================== B D Shrew ====================================================================== B D Mouse ====================================================================== Zebra mbuna ====================================================================== Pundamilia nyererei ====================================================================== Burton's mouthbreeder ====================================================================== Princess of Burundi ====================================================================== B D Nile tilapia ====================================================================== D Peregrine falcon ====================================================================== D Saker falcon ====================================================================== Mexican tetra (cavefish) ====================================================================== Spotted gar ====================================================================== B D Coelacanth ====================================================================== B D Zebrafish ====================================================================== B D Budgerigar ====================================================================== D Rock pigeon ====================================================================== Southern platyfish ====================================================================== B D Medaka ====================================================================== D Mallard duck ====================================================================== B D Tetraodon ====================================================================== D Chinese softshell turtle ====================================================================== Yellowbelly pufferfish ====================================================================== B D Fugu ====================================================================== B D Chicken ====================================================================== B D Turkey ====================================================================== B D X. tropicalis ====================================================================== D Painted turtle ====================================================================== B D Atlantic cod ====================================================================== B D American alligator ====================================================================== B D Lizard ====================================================================== B D Stickleback ====================================================================== B D Guinea pig ====================================================================== Prairie vole ====================================================================== B D Chinese hamster ====================================================================== B D Wallaby NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN B D Tasmanian devil ====================================================================== B D Platypus ====================================================================== D Green seaturtle ====================================================================== B D Rabbit ====================================================================== B D Opossum ====================================================================== B D Tenrec ====================================================================== Human agaca-tt-accaag Chimp agaca-tt-accaag Gorilla agaca-tt-accaag Orangutan agaca-tt-accaag Gibbon agaca-tt-accaag Rhesus agaca-tt-accaag Crab-eating macaque agaca-tt-accaag Baboon agaca-tt-accaag Green monkey agaca-tt-accaag Marmoset aagca-tt-accaaa Squirrel monkey gagca-tt-accaaa Bushbaby aggcagtt-aacaca Chinese tree shrew aggta-tc-a----- Squirrel --------------- Lesser Egyptian jerboa --------------- Naked mole-rat --------------- Chinchilla --------------- Brush-tailed rat --------------- Pika --------------- Pig aggca-tt-aggaca Alpaca aggca-tt-tccaca Bactrian camel aggca-tt-tccaca Dolphin aggca-tt-accaca Killer whale aggca-tt-accaca Tibetan antelope aggca-ttaaccaca Cow aggca-ttaaccaca Sheep aggca-ttaaccaca Domestic goat aggca-ttaaccaca Horse aggcg-tc-accaca White rhinoceros aggca-tt-accaca Cat aagcg-tt-accata Dog aggta-tt-accaca Ferret aggtg-tt-accaca Panda aggca-tt-accaca Pacific walrus agaca-tt-accacg Weddell seal agaca-tt-accaca Black flying-fox ggaca-tt-accaca Megabat ggaca-tt-accaca Big brown bat ggaca-tg-accaca David's myotis (bat) ggata-tt-accaca Little brown bat ggaca-tt-accaca Hedgehog agcta-ga-accgag Star-nosed mole --------------- Elephant aggca-tt-gccacg Cape elephant shrew aggca-tt-gccacg Manatee ----c-ct-tccaca Cape golden mole aagca-tt-gtcaca Aardvark aggca-cg-gccaca Armadillo agaca-tt-cccaca Golden hamster =============== Rat =============== Shrew =============== Mouse =============== Zebra mbuna =============== Pundamilia nyererei =============== Burton's mouthbreeder =============== Princess of Burundi =============== Nile tilapia =============== Peregrine falcon =============== Saker falcon =============== Mexican tetra (cavefish) =============== Spotted gar =============== Coelacanth =============== Zebrafish =============== Budgerigar =============== Rock pigeon =============== Southern platyfish =============== Medaka =============== Mallard duck =============== Tetraodon =============== Chinese softshell turtle =============== Yellowbelly pufferfish =============== Fugu =============== Chicken =============== Turkey =============== X. tropicalis =============== Painted turtle =============== Atlantic cod =============== American alligator =============== Lizard =============== Stickleback =============== Guinea pig =============== Prairie vole =============== Chinese hamster =============== Wallaby NNNNNNNNNNNNNNN Tasmanian devil =============== Platypus =============== Green seaturtle =============== Rabbit =============== Opossum =============== Tenrec =============== Inserts between block 2 and 3 in window B D Squirrel 14bp Lesser Egyptian jerboa 22bp B D Naked mole-rat 43bp Chinchilla 21bp Brush-tailed rat 20bp B D Pika 5bp Alignment block 3 of 530 in window, 25160502 - 25160510, 9 bps B D Human acttctcac B D Chimp acttctcac B D Gorilla acttctcac B D Orangutan acttctcac B D Gibbon acttctcac B D Rhesus acttctcac B D Crab-eating macaque acttctcac B D Baboon acttctcac B D Green monkey acttctcac B D Marmoset gcttcccat B D Squirrel monkey gcttcccat B D Bushbaby gcttcccac Chinese tree shrew -ctcactac B D Squirrel gcttcccac Lesser Egyptian jerboa gcttcctgg B D Chinese hamster atgtcttga Golden hamster atgtc-tga B D Mouse acttcctga B D Rat acttcctga B D Naked mole-rat gcttctgat Chinchilla gcttctgct Brush-tailed rat gcttctgtt B D Pig gcttcccat B D Alpaca gcttctcac Bactrian camel gcttctcac B D Dolphin gcttgccac Killer whale gcttgccac Tibetan antelope gtgtcccac B D Cow gcgtcctac B D Sheep gcgtcccac Domestic goat gcgtcccac B D Horse gctcgccac B D White rhinoceros gcttcccac B D Cat gcttcccac B D Dog gcttcccac B D Ferret gtttcccac B D Panda gcttcctac Pacific walrus gcttcctac Weddell seal gcttcccac Black flying-fox gctatgcag B D Megabat gctatgcag Big brown bat gcctctccg David's myotis (bat) gcctcccac D Little brown bat gcctcccac B D Hedgehog tct------ B D Elephant gcttcccac Cape elephant shrew tc-tcccac B D Manatee gcttcctac Cape golden mole gtgtctcac Aardvark acttcccac B D Armadillo gccgcccac Star-nosed mole --------- B D Shrew ========= Zebra mbuna ========= Pundamilia nyererei ========= Burton's mouthbreeder ========= Princess of Burundi ========= B D Nile tilapia ========= D Peregrine falcon ========= D Saker falcon ========= Mexican tetra (cavefish) ========= Spotted gar ========= B D Coelacanth ========= B D Zebrafish ========= B D Budgerigar ========= D Rock pigeon ========= Southern platyfish ========= B D Medaka ========= D Mallard duck ========= B D Tetraodon ========= D Chinese softshell turtle ========= Yellowbelly pufferfish ========= B D Fugu ========= B D Chicken ========= B D Turkey ========= B D X. tropicalis ========= D Painted turtle ========= B D Atlantic cod ========= B D American alligator ========= B D Lizard ========= B D Stickleback ========= B D Guinea pig ========= Prairie vole ========= B D Wallaby NNNNNNNNN B D Tasmanian devil ========= B D Platypus ========= D Green seaturtle ========= B D Rabbit ========= B D Opossum ========= B D Pika ========= B D Tenrec ========= Alignment block 4 of 530 in window, 25160511 - 25160512, 2 bps B D Human ct B D Chimp ct B D Gorilla ct B D Orangutan ct B D Gibbon ct B D Rhesus gt B D Crab-eating macaque gt B D Baboon gt B D Green monkey at B D Marmoset ct B D Squirrel monkey ct B D Bushbaby ct Chinese tree shrew ct B D Squirrel tt Lesser Egyptian jerboa gt B D Chinese hamster gt Golden hamster at B D Mouse gt B D Rat gt B D Naked mole-rat tg Chinchilla tc Brush-tailed rat tc B D Pig ct B D Alpaca ct B D Dolphin ct Killer whale ct Tibetan antelope ct B D Cow ct B D Sheep ct Domestic goat ct B D Horse ct B D White rhinoceros ct B D Cat c- B D Dog cc B D Ferret ct B D Panda ct Pacific walrus ct Weddell seal ct Black flying-fox ct B D Megabat ct Big brown bat ct David's myotis (bat) ct D Little brown bat ct B D Elephant ct Cape elephant shrew ct B D Manatee ct Cape golden mole tt Aardvark ct B D Armadillo ct Star-nosed mole -- B D Hedgehog -- B D Shrew == Zebra mbuna == Pundamilia nyererei == Burton's mouthbreeder == Princess of Burundi == B D Nile tilapia == D Peregrine falcon == D Saker falcon == Mexican tetra (cavefish) == Spotted gar == B D Coelacanth == B D Zebrafish == B D Budgerigar == D Rock pigeon == Southern platyfish == B D Medaka == D Mallard duck == B D Tetraodon == D Chinese softshell turtle == Yellowbelly pufferfish == B D Fugu == B D Chicken == B D Turkey == B D X. tropicalis == D Painted turtle == B D Atlantic cod == B D American alligator == B D Lizard == B D Stickleback == B D Guinea pig == Prairie vole == B D Wallaby NN B D Tasmanian devil == B D Platypus == D Green seaturtle == B D Rabbit == B D Opossum == B D Pika == Bactrian camel -- B D Tenrec == Alignment block 5 of 530 in window, 25160513 - 25160525, 13 bps B D Human gacagtccagag---c B D Chimp gacagtccagag---c B D Gorilla gacagtccagag---c B D Orangutan gacagtccagag---c B D Gibbon gacagtccagag---c B D Rhesus gacagtccagag---c B D Crab-eating macaque gacagtccagag---c B D Baboon gacagtccagag---c B D Green monkey gacagtccagag---c B D Marmoset ---------gtg---c B D Squirrel monkey gacagtccagag---c B D Bushbaby gacaacccagcg---c Chinese tree shrew gacagcccagagagcc B D Squirrel gacagtccaga-g--t Lesser Egyptian jerboa gacagcccaaa-a--c B D Chinese hamster gacagcccagagc--t Golden hamster gacagcccagagc--t B D Mouse gacatcccagaga--c B D Rat gacttcccagata--t B D Naked mole-rat cacggcccagaga--a Chinchilla cacagcccagaga--a Brush-tailed rat catcgccctgaga--a B D Pig cagagctcagaga--- B D Dolphin --gagcccagagc--- Killer whale --gagcccagagc--- Tibetan antelope gggagcccagaga--- B D Cow cggagcccagaca--- B D Sheep gggagcccagaga--- Domestic goat gggagcccagaga--- B D Horse cacagcccagaga--- B D White rhinoceros cacagcccagaga--- B D Cat cacagcccacagg--- B D Dog ccaagcccagagg--- B D Ferret cacag----------- B D Panda cacagcccagagg--- Pacific walrus cacagcccagagg--- Weddell seal cacagcccagagc--- Black flying-fox tatggcccagaga--- B D Megabat tatggcccagaga--- Big brown bat tccagccccgaga--- David's myotis (bat) gacagcccagagc--- D Little brown bat gacagcccggaga--- B D Hedgehog ----gtctagaac--- B D Elephant cacagcccagaga--- Cape elephant shrew catagcccaggca--- B D Manatee cacagcccagaca--- Cape golden mole cacagtccagaaa--- Aardvark cacatcccagaga--- B D Armadillo cacagcccaaaga--- Star-nosed mole ---------------- B D Shrew ================ Zebra mbuna ================ Pundamilia nyererei ================ Burton's mouthbreeder ================ Princess of Burundi ================ B D Nile tilapia ================ D Peregrine falcon ================ D Saker falcon ================ Mexican tetra (cavefish) ================ Spotted gar ================ B D Coelacanth ================ B D Zebrafish ================ B D Budgerigar ================ D Rock pigeon ================ Southern platyfish ================ B D Medaka ================ D Mallard duck ================ B D Tetraodon ================ D Chinese softshell turtle ================ Yellowbelly pufferfish ================ B D Fugu ================ B D Chicken ================ B D Turkey ================ B D X. tropicalis ================ D Painted turtle ================ B D Atlantic cod ================ B D American alligator ================ B D Lizard ================ B D Stickleback ================ B D Guinea pig ================ Prairie vole ================ B D Wallaby NNNNNNNNNNNNNNNN B D Tasmanian devil ================ B D Platypus ================ D Green seaturtle ================ B D Rabbit ================ B D Opossum ================ B D Pika ================ Bactrian camel ---------------- B D Alpaca ---------------- B D Tenrec ================ Inserts between block 5 and 6 in window B D Pig 2bp B D Dolphin 2bp Killer whale 2bp B D Horse 2bp B D White rhinoceros 2bp B D Cat 3bp B D Dog 2bp B D Panda 2bp Pacific walrus 1bp Weddell seal 1bp Black flying-fox 2bp B D Megabat 2bp Big brown bat 2bp David's myotis (bat) 2bp D Little brown bat 2bp B D Hedgehog 174bp Alignment block 6 of 530 in window, 25160526 - 25160546, 21 bps B D Human -actc-cc--------aggcgtgggtaggcc B D Chimp -actc-cc--------aggcgtgggtaggcc B D Gorilla -acac-cc--------aggcgtgggtaggcc B D Orangutan -actc-cc--------aggcgtgggcaggcc B D Gibbon -cctc-cc--------aggcgtgggtagg-- B D Rhesus -cctc-cc--------aggcgtgggtaggcc B D Crab-eating macaque -cctc-cc--------aggcgtgggtaggcc B D Baboon -cctc-cc--------aggcgtgggcaggcc B D Green monkey -cctc-cc--------aggcgtgggtaggcc B D Marmoset -cctc-cc--------aggtgtc-gtagacc B D Squirrel monkey -cctc-cc--------aggtgtcggtagacc B D Bushbaby -catc-cc--------aagccggggtcagcc Chinese tree shrew -ccct-cc--------agtcatgcgtgggcc B D Squirrel -cctc-cc--------tttgatgagtgggcc Lesser Egyptian jerboa -cctc-cc--------agcagcgagtgggcc Prairie vole ------------------tggggagtgggcc B D Chinese hamster -cttt-ct--------aatggggaatccacc Golden hamster -cttt-cc--------aacggggcatgcgcg B D Mouse -attc-cc--------agtggggaataggtc B D Rat -attc-cc--------agtgtggaataggcc B D Naked mole-rat -ccct-cc--------cggggtgggtgtgcc Chinchilla -cctc-cc--------tggggtgggt----- Brush-tailed rat -ccct-cc--------tggcatgggt----- B D Pika ---ca-cc--------tggcgtggg------ B D Pig -cctc-cc--------aggttccgttgggca B D Dolphin -cctc-cc--------agttttggttgggct Killer whale -cctc-cc--------agttttggttgggtt Tibetan antelope -cctc-ct--------agttccactgggggc B D Cow -cctc-cc--------agttcccgtgggggc B D Sheep -cctc-ct--------agttccactgggggc Domestic goat -cctc-ct--------agttccactgggggc B D Horse -cctc-cc--------agttgcgggtgggct B D White rhinoceros -cctc-cc--------agctgcgggtgggct B D Cat -cccc-cc--------agttgcagcgagcgt B D Dog -cccc-cc--------agtagcagtaagctt B D Ferret ------cc--------aacaacagtgagctt B D Panda -cccc-cc--------agtaacagcgagctt Pacific walrus -cccc-cc--------agtaacagtgagctt Weddell seal -cccc-cc--------ggtaacagggagatt Black flying-fox -cctt-tc--------agttgtggttgggct B D Megabat -cctt-cc--------agttgtggttgggct Big brown bat -cctt-cc--------cactgccgtggaggt David's myotis (bat) -cctt-cc--------c-ctgcccttgaggt D Little brown bat -cctt-cc--------c-ctgcccttgaggt Star-nosed mole --cct-cc--------agtcatgggcagcct B D Elephant gaccc-ct--------ggttgtgggcc---- Cape elephant shrew gacc-----------------tggggc---- B D Manatee gacac-cccacccccgggtcgtgggcc---- Cape golden mole gcctc-cc--------ctttgggcgcc---- Aardvark gccctgct--------cgtcatgggcc---- B D Armadillo gaccc-ct--------agccatgcgcc---- B D Hedgehog =============================== B D Shrew =============================== Zebra mbuna =============================== Pundamilia nyererei =============================== Burton's mouthbreeder =============================== Princess of Burundi =============================== B D Nile tilapia =============================== D Peregrine falcon =============================== D Saker falcon =============================== Mexican tetra (cavefish) =============================== Spotted gar =============================== B D Coelacanth =============================== B D Zebrafish =============================== B D Budgerigar =============================== D Rock pigeon =============================== Southern platyfish =============================== B D Medaka =============================== D Mallard duck =============================== B D Tetraodon =============================== D Chinese softshell turtle =============================== Yellowbelly pufferfish =============================== B D Fugu =============================== B D Chicken =============================== B D Turkey =============================== B D X. tropicalis =============================== D Painted turtle =============================== B D Atlantic cod =============================== B D American alligator =============================== B D Lizard =============================== B D Stickleback =============================== B D Guinea pig =============================== B D Wallaby NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN B D Tasmanian devil =============================== B D Platypus =============================== D Green seaturtle =============================== B D Rabbit =============================== B D Opossum =============================== Bactrian camel ------------------------------- B D Alpaca ------------------------------- B D Tenrec =============================== Inserts between block 6 and 7 in window B D Naked mole-rat 158bp Alignment block 7 of 530 in window, 25160547 - 25160575, 29 bps B D Human tcaac--c--------------t----gtccaa----ctggctt------tt-g-gaggtg B D Chimp tcaac--c--------------t----gtccaa----ctggctt------tt-g-gaggtg B D Gorilla tcaac--c--------------t----gtccaa----ctggctt------tt-g-gaggtg B D Orangutan tcaac--c--------------t----gtccaa----ctggctt------tt-g-gaggtg B D Gibbon -------c--------------t----gtccaa----ctggctt------tt-g-gaggtg B D Rhesus tcaac--c--------------t----gtacaa----ctggctt------tt-g-gaggtg B D Crab-eating macaque tcaac--c--------------t----gtacaa----ctggctt------tt-g-gaggtg B D Baboon tcaac--c--------------t----gtacaa----ctggctt------tt-g-gaggtg B D Green monkey tcaac--c--------------t----gtacaa----ctggctt------tt-g-gaggtg B D Marmoset tcaac--c--------------t----gtccaa----ctggctt------tt-g-ttggtg B D Squirrel monkey tcaac--c--------------t----gtcccg----ctggctt------ct-g-ttggtt B D Bushbaby tcagcaga--------------c----atcccacacccaggatt------ct-g-gagctg Chinese tree shrew tcaac--cc------------at----gcccag----cttgctt------tt-g-gaggtg B D Squirrel --------------------------------------------------tc-gcgaggtg Lesser Egyptian jerboa --------------------------------------------------tc-a-ggattt Prairie vole --------------------------------------------------tt-g-gtgatg B D Chinese hamster --------------------------------------------------tt-g-gatgtg Golden hamster --------------------------------------------------tt-a-gtggtg B D Mouse --------------------------------------------------tt-g-gtagcg B D Rat --------------------------------------------------cc-a-atagtg B D Pig --------t------catca-gc----ctcatg----gtggctc------tg-g-gaggtg B D Dolphin --------t------catcg-gc----ttcccg----ctggccc------at-g-gagttg Killer whale --------t------catcg-gc----ttccca----ctggctc------at-g-gagttg Tibetan antelope --------t------catct-gt----atccca----ctggctc------tt-g-ga-tta B D Cow --------t------catct-gt----gtccca----ctggctc------tt-g-gacttc B D Sheep --------t------catct-gt----gtccca----ctggctc------tt-g-gactta Domestic goat --------t------catct-gt----gtccca----ctggctc------tt-g-gactta B D Horse --------t------catca-at----gttggg----ctggctt------tt-g-gagctg B D White rhinoceros --------t------catca-gt----gtcggg----ctggctc------ttgg-gagttg B D Cat --------c------aacca-at----gttggg----cttgctc------tc-g-gaggtg B D Dog --------c------tgcaa-at----gtctgg----ctggctg------tt-g-gacatg B D Ferret --------c------aacca-at----gttggg----ctggttc------tt-a-gacatg B D Panda --------c------aacca-at----gttggg----ctggctc------tc-a-gacatg Pacific walrus --------c------aacca-at----gttgga----ctggctc------tc-g-ggcatg Weddell seal --------c------aacca-at----gttgga----ctggctc------tc-a-gatatg Black flying-fox --------t------catca-gg----gtcagg----ctggctcttggggtt-g------- B D Megabat --------t------catca-gg----gtcagg----ctggctcttggggtt-g------- Big brown bat -----------------tcc-ag----gtcggc----ctggccc------tg-g------- David's myotis (bat) -----------------tca-gtgtcggtcggc----ctggccc------tt-g------- D Little brown bat -----------------tca-gt----gtcggc----ctggccc------tt-g------- Star-nosed mole --------c------agcca-ac----atcaga----ctgactc---------a-gagttg B D Elephant -------at------gaccc-ac----gtccgg----tcggctt------ta-g-gagctg Cape elephant shrew -------atagctccaactc-ac----atgcag----ttggttt------tg-g-gagctg B D Manatee -------gt------gaccc-ac----gtctgg----ttggctt------tt-g-gagctg Cape golden mole -------ac------aaccc-ac----atctgg----ttagcgt------tt-g-gagttg Aardvark -------ac------aactctgc----atctgg----ttggctt------tt-g-gagctg B D Armadillo -------ac------aacca-at----gtccag----gtgattt------gg-g-gggc-- B D Hedgehog ============================================================= B D Shrew ============================================================= Zebra mbuna ============================================================= Pundamilia nyererei ============================================================= Burton's mouthbreeder ============================================================= Princess of Burundi ============================================================= B D Nile tilapia ============================================================= D Peregrine falcon ============================================================= D Saker falcon ============================================================= Mexican tetra (cavefish) ============================================================= Spotted gar ============================================================= B D Coelacanth ============================================================= B D Zebrafish ============================================================= B D Budgerigar ============================================================= D Rock pigeon ============================================================= Southern platyfish ============================================================= B D Medaka ============================================================= D Mallard duck ============================================================= B D Tetraodon ============================================================= D Chinese softshell turtle ============================================================= Yellowbelly pufferfish ============================================================= B D Fugu ============================================================= B D Chicken ============================================================= B D Turkey ============================================================= B D X. tropicalis ============================================================= D Painted turtle ============================================================= B D Atlantic cod ============================================================= B D American alligator ============================================================= B D Lizard ============================================================= B D Stickleback ============================================================= B D Guinea pig ============================================================= Brush-tailed rat ------------------------------------------------------------- B D Naked mole-rat ============================================================= Chinchilla ------------------------------------------------------------- B D Wallaby NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN B D Tasmanian devil ============================================================= B D Platypus ============================================================= D Green seaturtle ============================================================= B D Rabbit ============================================================= B D Opossum ============================================================= B D Pika ------------------------------------------------------------- Bactrian camel ------------------------------------------------------------- B D Alpaca ------------------------------------------------------------- B D Tenrec ============================================================= Inserts between block 7 and 8 in window B D Cat 707bp B D Dog 615bp B D Ferret 10bp B D Panda 502bp Pacific walrus 487bp Weddell seal 508bp Alignment block 8 of 530 in window, 25160576 - 25160610, 35 bps B D Human gac-cggagcc----------g--gggagcccctgag--------------------------------- B D Chimp gac-cggagcc----------g--gggagcccctgag--------------------------------- B D Gorilla gac-cggagcc----------g--gggagcccctgag--------------------------------- B D Orangutan gac-gggagcc----------g--gggagcccctgag--------------------------------- B D Gibbon gac-cggaacc----------g--gggagcccctgag--------------------------------- B D Rhesus gac-aggagcc----------g--gggagcccctgag--------------------------------- B D Crab-eating macaque gac-aggagcc----------g--gggagcccctgag--------------------------------- B D Baboon gac-aggagcc----------g--gggagcccctgag--------------------------------- B D Green monkey gac-aggagcc----------g--gggagcccctgag--------------------------------- B D Marmoset gacggggagcc----------g--gcaagtcc--tag--------------------------------- B D Squirrel monkey gatggggagcc----------g--gcaagccc--aag--------------------------------- B D Bushbaby cacagggagcca---------g--gggagcct--gag--------------------------------- Chinese tree shrew aaa-gagagcca---------g--aggatttcctgaggtcaattttttttaccgtggtctttttcttata B D Squirrel c-ctgcctggc------------------tccctgag--------------------------------- Lesser Egyptian jerboa g-c-cc---------------------------------------------------------------- Prairie vole a-c-ac---------------------------------------------------------------- B D Chinese hamster c-c-ac---------------------------------------------------------------- Golden hamster c-c-ac---------------------------------------------------------------- B D Mouse c-c-acctggc------------------ttc--agg--------------------------------- B D Rat c-c-acctggc------------------ttc--tag--------------------------------- Chinchilla ------ctgcc------------------cgcctggc--------------------------------- Brush-tailed rat ------ttgcc------------------cgcctgag--------------------------------- B D Pika ------ccacc------------------tct-------------------------------------- B D Pig ---------------------------------------------------------------------- B D Dolphin ---------------------------------------------------------------------- Killer whale ---------------------------------------------------------------------- Tibetan antelope ---------------------------------------------------------------------- B D Cow ---------------------------------------------------------------------- B D Sheep ---------------------------------------------------------------------- Domestic goat ---------------------------------------------------------------------- B D Horse ---------------------------------------------------------------------- B D White rhinoceros ---------------------------------------------------------------------- B D Ferret ---------------------------------------------------------------------- Black flying-fox ---------------------------------------------------------------------- B D Megabat ---------------------------------------------------------------------- Big brown bat ---------------------------------------------------------------------- David's myotis (bat) ---------------------------------------------------------------------- D Little brown bat ---------------------------------------------------------------------- Star-nosed mole ---------------------------------------------------------------------- B D Elephant -----------gacaggaacca---gaagaccctgaa--------------------------------- Cape elephant shrew -----------gacaggagtta--gggagaccctgag--------------------------------- B D Manatee -----------gacaggaactg--gggagaccctgag--------------------------------- Cape golden mole -----------gacaggaactg--gggagatcctaag--------------------------------- Aardvark -----------gacaggaaaca--gggagaccccctg--------------------------------- B D Armadillo -----------gaaaggaagcagtggggagtcctcag--------------------------------- B D Hedgehog ====================================================================== B D Shrew ====================================================================== Zebra mbuna ====================================================================== Pundamilia nyererei ====================================================================== Burton's mouthbreeder ====================================================================== Princess of Burundi ====================================================================== B D Nile tilapia ====================================================================== D Peregrine falcon ====================================================================== D Saker falcon ====================================================================== Mexican tetra (cavefish) ====================================================================== Spotted gar ====================================================================== B D Coelacanth ====================================================================== B D Zebrafish ====================================================================== B D Budgerigar ====================================================================== D Rock pigeon ====================================================================== Southern platyfish ====================================================================== B D Medaka ====================================================================== D Mallard duck ====================================================================== B D Tetraodon ====================================================================== D Chinese softshell turtle ====================================================================== Yellowbelly pufferfish ====================================================================== B D Fugu ====================================================================== B D Chicken ====================================================================== B D Turkey ====================================================================== B D X. tropicalis ====================================================================== D Painted turtle ====================================================================== B D Atlantic cod ====================================================================== B D American alligator ====================================================================== B D Lizard ====================================================================== B D Stickleback ====================================================================== B D Guinea pig ====================================================================== B D Naked mole-rat ====================================================================== B D Panda ====================================================================== B D Wallaby NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN B D Tasmanian devil ====================================================================== B D Platypus ====================================================================== D Green seaturtle ====================================================================== B D Rabbit ====================================================================== B D Opossum ====================================================================== Pacific walrus ====================================================================== Bactrian camel ---------------------------------------------------------------------- B D Alpaca ---------------------------------------------------------------------- B D Dog ====================================================================== B D Tenrec ====================================================================== B D Cat ====================================================================== Weddell seal ====================================================================== Human -----------------------------------------cgcc--cggg----------------g-- Chimp -----------------------------------------cgcc--cggg----------------g-- Gorilla -----------------------------------------cgcc--cggg----------------g-- Orangutan -----------------------------------------cgcc--cagg----------------g-- Gibbon -----------------------------------------cgcc--cggg----------------g-- Rhesus -----------------------------------------cacc--cggg----------------g-- Crab-eating macaque -----------------------------------------cacc--cggg----------------g-- Baboon -----------------------------------------cacc--cggg----------------g-- Green monkey -----------------------------------------cacc--tggg----------------g-- Marmoset -----------------------------------------catg--cggg----------------g-- Squirrel monkey -------------------------------------------tg--cggggccgggggtggggggtg-- Bushbaby -----------------------------------------ccct--cggg------------------- Chinese tree shrew gggcacatgagcttgacagagagacagggagaagtcac--actcc--cggg----------------ggt Squirrel -----------------------------------------tccc--catg----------------g-- Lesser Egyptian jerboa -------------------------------------------------------------------g-- Prairie vole ---------------------------------------------------------------------- Chinese hamster -------------------------------------------cc--taag----------------g-- Golden hamster -------------------------------------------cc--taag----------------g-- Mouse -----------------------------------------tccc--taag------------gtcag-- Rat -----------------------------------------tgcc--tagg------------gtcag-- Chinchilla -----------------------------------------tccc--tgg-----------------g-- Brush-tailed rat -----------------------------------------tccc--ttg-----------------g-- Pika -------------------------------------------cc--taaa----------------g-- Pig ------------------------------------------gat--ggaa----------------g-- Dolphin ------------------------------------------gat--ggga----------------a-- Killer whale ------------------------------------------gat--ggga----------------a-- Tibetan antelope ------------------------------------------ggt--ggga----------------a-- Cow ------------------------------------------agt--ggga----------------a-- Sheep ------------------------------------------ggt--ggga----------------a-- Domestic goat ------------------------------------------ggt--ggga----------------a-- Horse ------------------------------------------gac--caga----------------g-- White rhinoceros ------------------------------------------gacagagaa----------------g-- Ferret ------------------------------------------aac--cgca----------------g-- Black flying-fox ------------------------------------------gac--aga-----------------g-- Megabat ------------------------------------------gac--aga-----------------g-- Big brown bat ------------------------------------------gac--aggt----------------g-- David's myotis (bat) ------------------------------------------gac--agat----------------g-- Little brown bat ------------------------------------------gac--aggt----------------g-- Star-nosed mole -------------------------------------------aa--ctga----------------a-- Elephant ----------------------------------------gtccc--tatg----------------g-- Cape elephant shrew ----------------------------------------atccc--tgtg----------------g-- Manatee ----------------------------------------gcccc--tgtg----------------g-- Cape golden mole ----------------------------------------gctcc--catg----------------g-- Aardvark -------------------------------taattactagtccc--cgtg----------------a-- Armadillo ----------------------------------------gtccc--cagg----------------a-- Hedgehog ====================================================================== Shrew ====================================================================== Zebra mbuna ====================================================================== Pundamilia nyererei ====================================================================== Burton's mouthbreeder ====================================================================== Princess of Burundi ====================================================================== Nile tilapia ====================================================================== Peregrine falcon ====================================================================== Saker falcon ====================================================================== Mexican tetra (cavefish) ====================================================================== Spotted gar ====================================================================== Coelacanth ====================================================================== Zebrafish ====================================================================== Budgerigar ====================================================================== Rock pigeon ====================================================================== Southern platyfish ====================================================================== Medaka ====================================================================== Mallard duck ====================================================================== Tetraodon ====================================================================== Chinese softshell turtle ====================================================================== Yellowbelly pufferfish ====================================================================== Fugu ====================================================================== Chicken ====================================================================== Turkey ====================================================================== X. tropicalis ====================================================================== Painted turtle ====================================================================== Atlantic cod ====================================================================== American alligator ====================================================================== Lizard ====================================================================== Stickleback ====================================================================== Guinea pig ====================================================================== Naked mole-rat ====================================================================== Panda ====================================================================== Wallaby NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN Tasmanian devil ====================================================================== Platypus ====================================================================== Green seaturtle ====================================================================== Rabbit ====================================================================== Opossum ====================================================================== Pacific walrus ====================================================================== Bactrian camel ---------------------------------------------------------------------- Alpaca ---------------------------------------------------------------------- Dog ====================================================================== Tenrec ====================================================================== Cat ====================================================================== Weddell seal ====================================================================== Human ------------------------------------------------tc Chimp ------------------------------------------------tc Gorilla ------------------------------------------------tc Orangutan ------------------------------------------------tc Gibbon ------------------------------------------------tc Rhesus ------------------------------------------------tc Crab-eating macaque ------------------------------------------------tc Baboon ------------------------------------------------tc Green monkey ------------------------------------------------tc Marmoset ------------------------------------------------tc Squirrel monkey ------------------------------------------------cc Bushbaby -------------------------------------------------- Chinese tree shrew ggccatgccacaatcccttcccctccagtctcctcttgagatctgcactc Squirrel ------------------------------------------------tc Lesser Egyptian jerboa ------------------------------------------------tc Prairie vole -------------------------------------------------- Chinese hamster ------------------------------------------------tc Golden hamster ------------------------------------------------tc Mouse ------------------------------------------------tc Rat ------------------------------------------------tc Chinchilla ------------------------------------------------gc Brush-tailed rat ------------------------------------------------tc Pika ------------------------------------------------gc Pig ------------------------------------------------cc Dolphin ------------------------------------------------gc Killer whale ------------------------------------------------gc Tibetan antelope ------------------------------------------------cc Cow ------------------------------------------------cc Sheep ------------------------------------------------cc Domestic goat ------------------------------------------------cc Horse ------------------------------------------------cc White rhinoceros ------------------------------------------------cc Ferret --------------------------------------------gccccc Black flying-fox ------------------------------------------------cc Megabat ------------------------------------------------cc Big brown bat ------------------------------------------------cc David's myotis (bat) ------------------------------------------------cc Little brown bat ------------------------------------------------cc Star-nosed mole ------------------------------------------------cc Elephant ------------------------------------------------tc Cape elephant shrew ------------------------------------------------tc Manatee ------------------------------------------------tc Cape golden mole ------------------------------------------------cc Aardvark ------------------------------------------------tc Armadillo ------------------------------------------------cc Hedgehog ================================================== Shrew ================================================== Zebra mbuna ================================================== Pundamilia nyererei ================================================== Burton's mouthbreeder ================================================== Princess of Burundi ================================================== Nile tilapia ================================================== Peregrine falcon ================================================== Saker falcon ================================================== Mexican tetra (cavefish) ================================================== Spotted gar ================================================== Coelacanth ================================================== Zebrafish ================================================== Budgerigar ================================================== Rock pigeon ================================================== Southern platyfish ================================================== Medaka ================================================== Mallard duck ================================================== Tetraodon ================================================== Chinese softshell turtle ================================================== Yellowbelly pufferfish ================================================== Fugu ================================================== Chicken ================================================== Turkey ================================================== X. tropicalis ================================================== Painted turtle ================================================== Atlantic cod ================================================== American alligator ================================================== Lizard ================================================== Stickleback ================================================== Guinea pig ================================================== Naked mole-rat ================================================== Panda ================================================== Wallaby NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN Tasmanian devil ================================================== Platypus ================================================== Green seaturtle ================================================== Rabbit ================================================== Opossum ================================================== Pacific walrus ================================================== Bactrian camel -------------------------------------------------- Alpaca -------------------------------------------------- Dog ================================================== Tenrec ================================================== Cat ================================================== Weddell seal ================================================== Inserts between block 8 and 9 in window B D Pig 6bp B D Dolphin 6bp Killer whale 6bp Tibetan antelope 5bp B D Cow 5bp B D Sheep 5bp Domestic goat 5bp B D Horse 6bp B D White rhinoceros 6bp B D Ferret 6bp Black flying-fox 4bp B D Megabat 4bp Big brown bat 6bp David's myotis (bat) 6bp D Little brown bat 6bp Star-nosed mole 22bp Alignment block 9 of 530 in window, 25160611 - 25160613, 3 bps B D Human ---ac----------------------------------------t B D Chimp ---ac----------------------------------------t B D Gorilla ---ac----------------------------------------t B D Orangutan ---ac----------------------------------------t B D Gibbon ---ac----------------------------------------t B D Rhesus ---ac----------------------------------------t B D Crab-eating macaque ---ac----------------------------------------t B D Baboon ---ac----------------------------------------t B D Green monkey ---ac----------------------------------------t B D Marmoset ---ac----------------------------------------t B D Squirrel monkey ---ac----------------------------------------t Chinese tree shrew ---acatgcacatgctaggcatgagtttgaagccaccagtctggac B D Squirrel ---ac----------------------------------------t Lesser Egyptian jerboa ---ta----------------------------------------g B D Chinese hamster ---ac----------------------------------------t Golden hamster ---ac----------------------------------------t B D Mouse ---ac----------------------------------------t B D Rat ---ac----------------------------------------t Chinchilla ---aa----------------------------------------a Brush-tailed rat ---ac----------------------------------------t B D Pika ---gc----------------------------------------a B D Pig ----------------------------------g----------- B D Dolphin ----------------------------------a----------- Killer whale ----------------------------------a----------- Tibetan antelope ----------------------------------a----------- B D Cow ----------------------------------a----------- B D Sheep ----------------------------------a----------- Domestic goat ----------------------------------a----------- B D Horse ----------------------------------gct--------- B D White rhinoceros ----------------------------------act--------- B D Ferret ----------------------------------gca--------- Black flying-fox ----------------------------------act--------- B D Megabat ----------------------------------act--------- Big brown bat ----------------------------------act--------- David's myotis (bat) ----------------------------------act--------- D Little brown bat ----------------------------------act--------- B D Hedgehog ----------------------------------aca--------- B D Elephant act------------------------------------------- Cape elephant shrew acc------------------------------------------- B D Manatee act------------------------------------------- Cape golden mole att------------------------------------------- Aardvark act------------------------------------------- B D Armadillo -ct------------------------------------------- Star-nosed mole ============================================== B D Shrew ============================================== Zebra mbuna ============================================== Pundamilia nyererei ============================================== Burton's mouthbreeder ============================================== Princess of Burundi ============================================== B D Nile tilapia ============================================== D Peregrine falcon ============================================== D Saker falcon ============================================== Mexican tetra (cavefish) ============================================== Spotted gar ============================================== B D Coelacanth ============================================== B D Zebrafish ============================================== B D Budgerigar ============================================== D Rock pigeon ============================================== Southern platyfish ============================================== B D Medaka ============================================== D Mallard duck ============================================== B D Tetraodon ============================================== D Chinese softshell turtle ============================================== Yellowbelly pufferfish ============================================== B D Fugu ============================================== B D Chicken ============================================== B D Turkey ============================================== B D X. tropicalis ============================================== D Painted turtle ============================================== B D Atlantic cod ============================================== B D American alligator ============================================== B D Lizard ============================================== B D Stickleback ============================================== B D Guinea pig ============================================== B D Naked mole-rat ============================================== Prairie vole ---------------------------------------------- B D Panda ============================================== B D Wallaby NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN B D Tasmanian devil ============================================== B D Platypus ============================================== D Green seaturtle ============================================== B D Rabbit ============================================== B D Opossum ============================================== Pacific walrus ============================================== Bactrian camel ---------------------------------------------- B D Alpaca ---------------------------------------------- B D Dog ============================================== B D Tenrec ============================================== B D Cat ============================================== Weddell seal ============================================== B D Bushbaby ---------------------------------------------- Alignment block 10 of 530 in window, 25160614 - 25160615, 2 bps B D Human ct- B D Chimp ct- B D Gorilla ct- B D Orangutan cc- B D Gibbon ct- B D Rhesus ct- B D Crab-eating macaque ct- B D Baboon ct- B D Green monkey ct- B D Marmoset ct- B D Squirrel monkey ct- Chinese tree shrew cg- B D Squirrel ct- Lesser Egyptian jerboa ct- B D Chinese hamster ct- Golden hamster ct- B D Mouse ct- B D Rat ct- Chinchilla cg- Brush-tailed rat cg- B D Pika gc- B D Pig ct- Bactrian camel ct- B D Dolphin ct- Killer whale ct- Tibetan antelope at- B D Cow at- B D Sheep ac- Domestic goat at- B D Horse cc- B D White rhinoceros cc- B D Ferret tc- Black flying-fox ct- B D Megabat ct- Big brown bat ct- David's myotis (bat) ct- D Little brown bat ct- B D Hedgehog cc- B D Elephant -tg Cape elephant shrew -tc B D Manatee -tg Cape golden mole -ca Aardvark -ag B D Armadillo -cc Star-nosed mole === B D Shrew === Zebra mbuna === Pundamilia nyererei === Burton's mouthbreeder === Princess of Burundi === B D Nile tilapia === D Peregrine falcon === D Saker falcon === Mexican tetra (cavefish) === Spotted gar === B D Coelacanth === B D Zebrafish === B D Budgerigar === D Rock pigeon === Southern platyfish === B D Medaka === D Mallard duck === B D Tetraodon === D Chinese softshell turtle === Yellowbelly pufferfish === B D Fugu === B D Chicken === B D Turkey === B D X. tropicalis === D Painted turtle === B D Atlantic cod === B D American alligator === B D Lizard === B D Stickleback === B D Guinea pig === B D Naked mole-rat === Prairie vole --- B D Panda === B D Wallaby NNN B D Tasmanian devil === B D Platypus === D Green seaturtle === B D Rabbit === B D Opossum === Pacific walrus === B D Alpaca --- B D Dog === B D Tenrec === B D Cat === Weddell seal === B D Bushbaby --- Inserts between block 10 and 11 in window Big brown bat 18bp David's myotis (bat) 14bp D Little brown bat 14bp Alignment block 11 of 530 in window, 25160616 - 25160644, 29 bps B D Human tg--------------ca------gga------atcctg--------c-cttt---------acac---- B D Chimp tg--------------ca------gga------atcctg--------c-cttt---------acac---- B D Gorilla tg--------------ca------gga------atcctg--------c-cttt---------acac---- B D Orangutan tg--------------ca------gga------atcctg--------t-cttt---------acac---- B D Gibbon tg--------------ca------gga------atcctg--------c-cttt---------acac---- B D Rhesus tg--------------ca------gga------atcctg--------c-cttt---------gcac---- B D Crab-eating macaque tg--------------ca------gga------atcctg--------c-cttt---------gcac---- B D Baboon tg--------------ca------gga------atcctg--------c-cttt---------gcac---- B D Green monkey tg--------------ca------gga------atcctg--------c-cttt---------gcac---- B D Marmoset tg--------------ca------gga------atcctg--------c-ctttt-------aacac---- B D Squirrel monkey tg--------------ca------gga------atcctg--------c-ctttt-------agcat---- B D Bushbaby ----------------ta------gga------atcctg--------c-ctttc-------agcac---- Chinese tree shrew tg--------------tg------gga------gtccagagagctaac-catt---------acgc---- B D Squirrel tg--------------ta------gga------actatg--------a-cttt---------tggc---- Lesser Egyptian jerboa tc--------------ct------gaa-------tcctg--------c-cttt---------gagc---- Prairie vole -----------------a------gga------atgtt-------------------------------- B D Chinese hamster tg--------------ta------gga------atcctg--------c-tttg---------gggc---- Golden hamster tg--------------ta------gga------atcctg--------c-attg---------gggc---- B D Mouse tg--------------ta------gga--------cttg--------g-cttt---------gggc---- B D Rat tg--------------ta------gga--------cttg--------g-ctt------------------ Chinchilla tg--------------ta------aca------gtact-------------------------------- Brush-tailed rat tg--------------ta------aca------gtact-------------------------------- B D Pika tg--------------caatccccaca------gtcctt--------caccct---------gaga---- B D Pig tg--------------ga------gaa------accctg--------c-ctttg-------ggtac---- B D Alpaca tg--------------ga------gaa------atcctg--------c-cgttt-------gacgc---- Bactrian camel tg--------------ga------gaa------atcctg--------c-ctttt-------gacgc---- B D Dolphin tg--------------ga------gga------atcctg--------c-ctctt-------gacac---- Killer whale tg--------------ga------gga------atcctg--------c-ctctt-------gacac---- Tibetan antelope ag--------------ga------gga------aacctg--------t-cttttg---gaggaatc---- B D Cow ag--------------ga------gga------atcctg--------t-cttttg---gaggaatc---- B D Sheep ag--------------ga------gga------atcctg--------t-cttttg---gaggaatc---- Domestic goat ag--------------ga------gga------atcctg--------t-ctttgg---gaggaatc---- B D Horse tg--------------ta------gga------atcctc--------c-ctact-------gacgc---- B D White rhinoceros tg--------------ta------gga------atcctg--------c-ctttt-------gacgc---- B D Ferret agccaagtcaccaaactg------gggcttaatacctta--------c-ctaat-------tgcaccctc Black flying-fox cg--------------ta------gga------atcctg--------c-ctttt-------gatgt---- B D Megabat cg--------------ta------gga------atcctg--------c-ctttt-------gatgt---- Big brown bat tg--------------ta------gga------atcctg--------c-ctttt-------ggtgc---- David's myotis (bat) tg--------------ta------gga------atcctg--------c-ctttg-------ggtgc---- D Little brown bat tg--------------ta------gga------atcctg--------c-ctttg-------ggtgc---- B D Hedgehog -----------------t------gca------gacctg--------c-ttcac-------cac------ Star-nosed mole -----------------------------------------------c-ctctc-------cct------ B D Elephant tt--------------ta------gga------atc--------------------------at------ Cape elephant shrew tg--------------ta------gga------accct---------c-ctttgacttatctgt------ B D Manatee tg--------------ta------gga------atc--------------------------at------ Cape golden mole tg--------------tg------gga------atcccg--------c-ctttggcccatctgt------ Aardvark tg--------------ta------gga------attttg--------c-ctttggcccatctgt------ B D Armadillo tg--------------ta------gga------atcttg--------c-cttctggcccactac------ B D Shrew ====================================================================== Zebra mbuna ====================================================================== Pundamilia nyererei ====================================================================== Burton's mouthbreeder ====================================================================== Princess of Burundi ====================================================================== B D Nile tilapia ====================================================================== D Peregrine falcon ====================================================================== D Saker falcon ====================================================================== Mexican tetra (cavefish) ====================================================================== Spotted gar ====================================================================== B D Coelacanth ====================================================================== B D Zebrafish ====================================================================== B D Budgerigar ====================================================================== D Rock pigeon ====================================================================== Southern platyfish ====================================================================== B D Medaka ====================================================================== D Mallard duck ====================================================================== B D Tetraodon ====================================================================== D Chinese softshell turtle ====================================================================== Yellowbelly pufferfish ====================================================================== B D Fugu ====================================================================== B D Chicken ====================================================================== B D Turkey ====================================================================== B D X. tropicalis ====================================================================== D Painted turtle ====================================================================== B D Atlantic cod ====================================================================== B D American alligator ====================================================================== B D Lizard ====================================================================== B D Stickleback ====================================================================== B D Guinea pig ====================================================================== B D Naked mole-rat ====================================================================== B D Panda ====================================================================== B D Wallaby NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN B D Tasmanian devil ====================================================================== B D Platypus ====================================================================== D Green seaturtle ====================================================================== B D Rabbit ====================================================================== B D Opossum ====================================================================== Pacific walrus ====================================================================== B D Dog ====================================================================== B D Tenrec ====================================================================== B D Cat ====================================================================== Weddell seal ====================================================================== Human ------------------------------------------------------------gtgtg----- Chimp ------------------------------------------------------------gtgtg----- Gorilla ------------------------------------------------------------gtgta----- Orangutan ------------------------------------------------------------gtgtg----- Gibbon ------------------------------------------------------------gtgtg----- Rhesus ------------------------------------------------------------gtgtg----- Crab-eating macaque ------------------------------------------------------------gtgtg----- Baboon ------------------------------------------------------------gtgtg----- Green monkey ------------------------------------------------------------gtgtg----- Marmoset ------------------------------------------------------------gtgtg----- Squirrel monkey ------------------------------------------------------------gtgtg----- Bushbaby ------------------------------------------------------------ccatg----- Chinese tree shrew --------------------------------catctcctggtcccctgaagtcactcttgtgtgaccca Squirrel ---------------------------------------------------------------------- Lesser Egyptian jerboa -----------------------------------------------------------acaggg----- Prairie vole ---------------------------------------------------------------------- Chinese hamster ---------------------------------------------------------------------- Golden hamster ----------------------------------------------------------caggctg----- Mouse -----------------------------------------------------------caggct----- Rat -----------------------------------------------------------aagggc----- Chinchilla ------------------------------------------------------------aaggg----- Brush-tailed rat ------------------------------------------------------------aaggg----- Pika ----------------------------------------------------------gggaggc----- Pig ------------------------------------------------------------a---g----- Alpaca ------------------------------------------------------------acctg----- Bactrian camel ------------------------------------------------------------acctg----- Dolphin ------------------------------------------------------------atcag----- Killer whale ------------------------------------------------------------atcag----- Tibetan antelope ------------------------------------------------------------atcag----- Cow ------------------------------------------------------------atcag----- Sheep ------------------------------------------------------------atcag----- Domestic goat ------------------------------------------------------------atcag----- Horse ------------------------------------------------------------atctg----- White rhinoceros ------------------------------------------------------------atctg----- Ferret ccccagaaatgtaaatctagttccttgatcaggaatttcctggtaagcaccaatcaggtaatctg----- Black flying-fox ------------------------------------------------------------acctt----- Megabat ------------------------------------------------------------acctt----- Big brown bat ------------------------------------------------------------atctt----- David's myotis (bat) ------------------------------------------------------------acctt----- Little brown bat ------------------------------------------------------------acctt----- Hedgehog ---------------------------------------------------------------------- Star-nosed mole ---------------------------------------------------------------------- Elephant ---------------------------------------------------------------------- Cape elephant shrew ---------------------------------------------------------------------- Manatee ---------------------------------------------------------------------- Cape golden mole ---------------------------------------------------------------------- Aardvark ---------------------------------------------------------------------- Armadillo ---------------------------------------------------------------------- Shrew ====================================================================== Zebra mbuna ====================================================================== Pundamilia nyererei ====================================================================== Burton's mouthbreeder ====================================================================== Princess of Burundi ====================================================================== Nile tilapia ====================================================================== Peregrine falcon ====================================================================== Saker falcon ====================================================================== Mexican tetra (cavefish) ====================================================================== Spotted gar ====================================================================== Coelacanth ====================================================================== Zebrafish ====================================================================== Budgerigar ====================================================================== Rock pigeon ====================================================================== Southern platyfish ====================================================================== Medaka ====================================================================== Mallard duck ====================================================================== Tetraodon ====================================================================== Chinese softshell turtle ====================================================================== Yellowbelly pufferfish ====================================================================== Fugu ====================================================================== Chicken ====================================================================== Turkey ====================================================================== X. tropicalis ====================================================================== Painted turtle ====================================================================== Atlantic cod ====================================================================== American alligator ====================================================================== Lizard ====================================================================== Stickleback ====================================================================== Guinea pig ====================================================================== Naked mole-rat ====================================================================== Panda ====================================================================== Wallaby NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN Tasmanian devil ====================================================================== Platypus ====================================================================== Green seaturtle ====================================================================== Rabbit ====================================================================== Opossum ====================================================================== Pacific walrus ====================================================================== Dog ====================================================================== Tenrec ====================================================================== Cat ====================================================================== Weddell seal ====================================================================== Human ---ct Chimp ---ct Gorilla ---ct Orangutan ---ct Gibbon ---ct Rhesus ---ct Crab-eating macaque ---ct Baboon ---ct Green monkey ---ct Marmoset ---ct Squirrel monkey ---ct Bushbaby ---cc Chinese tree shrew catct Squirrel ----- Lesser Egyptian jerboa ---at Prairie vole ----- Chinese hamster ----- Golden hamster ---ac Mouse ---ca Rat ---ca Chinchilla ---ca Brush-tailed rat ---ca Pika ---gt Pig ---ct Alpaca ---ct Bactrian camel ---ct Dolphin ---cc Killer whale ---cc Tibetan antelope ---ct Cow ---ct Sheep ---ct Domestic goat ---ct Horse ---ct White rhinoceros ---ct Ferret ---tt Black flying-fox ---ct Megabat ---cc Big brown bat ---ct David's myotis (bat) ---ct Little brown bat ---ct Hedgehog ----- Star-nosed mole ----- Elephant ----- Cape elephant shrew ----- Manatee ----- Cape golden mole ----- Aardvark ----- Armadillo ----- Shrew ===== Zebra mbuna ===== Pundamilia nyererei ===== Burton's mouthbreeder ===== Princess of Burundi ===== Nile tilapia ===== Peregrine falcon ===== Saker falcon ===== Mexican tetra (cavefish) ===== Spotted gar ===== Coelacanth ===== Zebrafish ===== Budgerigar ===== Rock pigeon ===== Southern platyfish ===== Medaka ===== Mallard duck ===== Tetraodon ===== Chinese softshell turtle ===== Yellowbelly pufferfish ===== Fugu ===== Chicken ===== Turkey ===== X. tropicalis ===== Painted turtle ===== Atlantic cod ===== American alligator ===== Lizard ===== Stickleback ===== Guinea pig ===== Naked mole-rat ===== Panda ===== Wallaby NNNNN Tasmanian devil ===== Platypus ===== Green seaturtle ===== Rabbit ===== Opossum ===== Pacific walrus ===== Dog ===== Tenrec ===== Cat ===== Weddell seal ===== Inserts between block 11 and 12 in window B D Ferret 336bp Alignment block 12 of 530 in window, 25160645 - 25160664, 20 bps B D Human agctgagcagtc---tcccactc B D Chimp agctgagcagtc---tcccactc B D Gorilla agctgagcagtc---tcccactc B D Orangutan agctgagcagtc---tcccactc B D Gibbon agctgagcagtc---tcccactc B D Rhesus agctgagcagtc---ttccactc B D Crab-eating macaque agctgagcagtc---ttccactc B D Baboon agctgagcagtc---ttccactc B D Green monkey agctgagcagtc---tcccactc B D Marmoset agctgagccgcct-ttcccactc B D Squirrel monkey agctgagccgtct-ttcccactc B D Bushbaby agctgtgcagcc--tttccactc Chinese tree shrew cgtggaacgatct-ttcctgccc B D Squirrel ----------ac----------- Lesser Egyptian jerboa agccaagcagtc----------- B D Chinese hamster -------cagtc----------- Golden hamster agctaggcagcc----------- B D Mouse aattaagcagcc----------- B D Rat agctaagcagac----------- Chinchilla gaaaatggagtc----------- Brush-tailed rat gaaaatggagtc----------- B D Pika acactcatggac----------- B D Pig agctaagcagtcttttcccagcc B D Alpaca aactgagcagtcttttcccatcc Bactrian camel aactgagcagtcttttcccatcc B D Dolphin agctgagcagtccttccccatcc Killer whale agctgagcagtccttccccatcc Tibetan antelope ggctgatcagtccttctgcactc B D Cow ggctgatcagtcttttcgcactc B D Sheep gactgatcagtctttccgcactc Domestic goat ggctgatcagtctttccgcactc B D Horse agctgagcag--tcttcccaccc B D White rhinoceros agctgagcagtctctccccagcc Black flying-fox agctgggcagtcttttcctagcc B D Megabat agccgagcagtcttttcctagcc Big brown bat ag--------------------- David's myotis (bat) agctgagcag--ttttcccaccc D Little brown bat agctgagcaa--ttttcccaccc B D Hedgehog --ctgagtcgactcccctg--ca Star-nosed mole --cggaatcctgtccttcg---- B D Elephant tgctgagtggtc---ttccaccc Cape elephant shrew tggtgaagtgtc---ttctccct B D Manatee tgtcgagcggtc---ttccaccc Cape golden mole tgctgatctgtc---ttccatcc Aardvark tgctgtgctgtc---ttccaccc B D Armadillo tgc-gagcagcc---ttttcccc B D Shrew ======================= Zebra mbuna ======================= Pundamilia nyererei ======================= Burton's mouthbreeder ======================= Princess of Burundi ======================= B D Nile tilapia ======================= D Peregrine falcon ======================= D Saker falcon ======================= Mexican tetra (cavefish) ======================= Spotted gar ======================= B D Coelacanth ======================= B D Zebrafish ======================= B D Budgerigar ======================= D Rock pigeon ======================= Southern platyfish ======================= B D Medaka ======================= D Mallard duck ======================= B D Tetraodon ======================= D Chinese softshell turtle ======================= Yellowbelly pufferfish ======================= B D Fugu ======================= B D Chicken ======================= B D Turkey ======================= B D X. tropicalis ======================= D Painted turtle ======================= B D Atlantic cod ======================= B D American alligator ======================= B D Lizard ======================= B D Stickleback ======================= B D Guinea pig ======================= B D Naked mole-rat ======================= Prairie vole ----------------------- B D Panda ======================= B D Wallaby NNNNNNNNNNNNNNNNNNNNNNN B D Tasmanian devil ======================= B D Platypus ======================= D Green seaturtle ======================= B D Rabbit ======================= B D Opossum ======================= Pacific walrus ======================= B D Ferret ======================= B D Dog ======================= B D Tenrec ======================= B D Cat ======================= Weddell seal ======================= Inserts between block 12 and 13 in window Cape elephant shrew 2556bp B D Armadillo 3bp Alignment block 13 of 530 in window, 25160665 - 25160694, 30 bps B D Human ---agtggagtgtgtggaa---------------------------------------aatacggccatc B D Chimp ---agtggagtgtgtggaa---------------------------------------aatacggccatc B D Gorilla ---agtggagtgtgtggaa---------------------------------------aatacggccatc B D Orangutan ---agtgaagtgtgtggaa---------------------------------------aatacggccatc B D Gibbon ---agtggggtgtgtggaa---------------------------------------aatacggccatc B D Rhesus ---agtggagtgtgtggaa---------------------------------------aatacggccatc B D Crab-eating macaque ---agtggagtgtgtggaa---------------------------------------aatacggccatc B D Baboon ---agtggagtgtgtggaa---------------------------------------aatacggccatc B D Green monkey ---agtggagtgtgtggaa---------------------------------------aatacggccatc B D Marmoset ---agtggagtgtgtggaa---------------------------------------aacacagccatc B D Squirrel monkey ---agtggagtgtgcggga---------------------------------------aa---agccatc B D Bushbaby ---aaggagg---gtggaa---------------------------------------aat--------- Chinese tree shrew ---actagag--ggtggaa---------------------------------------aatgaagccttc B D Squirrel -------------------------------------------------------------------atc Lesser Egyptian jerboa -------------------------------------------------------------------ttt B D Chinese hamster -------------------------------------------------------------------atc Golden hamster -------------------------------------------------------------------gtc B D Mouse -------------------------------------------------------------------att B D Rat -------------------------------------------------------------------atc Chinchilla -------------------------------------------------------------------atc Brush-tailed rat -------------------------------------------------------------------atc B D Pika -------------------------------------------------------------------acc B D Pig ---aatggagagcgggaaa--------------------------------------------------- B D Alpaca ---agtggagaaggggaag--------------------------------------------------- Bactrian camel ---agtggagaaggggaag--------------------------------------------------- B D Dolphin ---aatggagagtgggaaa--------------------------------------------------- Killer whale ---aatggagagtgggaaa--------------------------------------------------- Tibetan antelope ---gatggagagtgggaaa--------------------------------------------------- B D Cow ---aatggagagtgggaaa--------------------------------------------------- B D Sheep ---gatggagagtgggaaa--------------------------------------------------- Domestic goat ---gatggagagtgggaaa--------------------------------------------------- B D Horse ---aagggagggtgggaaa--------------------------------------------------- B D White rhinoceros ---agtggaaggtggggaa--------------------------------------------------- Black flying-fox ---aacggagggtgggaaa--------------------------------------------------- B D Megabat ---aacggagggtgggaaa--------------------------------------------------- David's myotis (bat) ---aacaaagggtggcaaa--------------------------------------------------- D Little brown bat ---aacgaagggtggcaaa--------------------------------------------------- B D Hedgehog ---ggtggggatctgggggctggaaccgggatccttatgccagtctctgcgctttgcg------------ Star-nosed mole ------gcatatctgctaagtgaa----------------cagtctttctgcacc-ca------------ B D Elephant agtggaagagggtgggaaa--------------------------------------------------- B D Manatee aatggaagcaggtgggaaa--------------------------------------------------- Cape golden mole aatggaagggggtgagaaa--------------------------------------------------- Aardvark agtggaagtgtgtgggaaa--------------------------------------------------- B D Armadillo -ggggaagagggtgaggaa--------------------------------------------------- B D Shrew ====================================================================== Zebra mbuna ====================================================================== Pundamilia nyererei ====================================================================== Burton's mouthbreeder ====================================================================== Princess of Burundi ====================================================================== B D Nile tilapia ====================================================================== D Peregrine falcon ====================================================================== D Saker falcon ====================================================================== Mexican tetra (cavefish) ====================================================================== Spotted gar ====================================================================== B D Coelacanth ====================================================================== B D Zebrafish ====================================================================== B D Budgerigar ====================================================================== D Rock pigeon ====================================================================== Southern platyfish ====================================================================== B D Medaka ====================================================================== D Mallard duck ====================================================================== B D Tetraodon ====================================================================== D Chinese softshell turtle ====================================================================== Yellowbelly pufferfish ====================================================================== B D Fugu ====================================================================== B D Chicken ====================================================================== B D Turkey ====================================================================== B D X. tropicalis ====================================================================== D Painted turtle ====================================================================== B D Atlantic cod ====================================================================== B D American alligator ====================================================================== B D Lizard ====================================================================== B D Stickleback ====================================================================== B D Guinea pig ====================================================================== B D Naked mole-rat ====================================================================== Prairie vole ---------------------------------------------------------------------- Cape elephant shrew ====================================================================== B D Panda ====================================================================== B D Wallaby NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN B D Tasmanian devil ====================================================================== B D Platypus ====================================================================== D Green seaturtle ====================================================================== Big brown bat ---------------------------------------------------------------------- B D Rabbit ====================================================================== B D Opossum ====================================================================== Pacific walrus ====================================================================== B D Ferret ====================================================================== B D Dog ====================================================================== B D Tenrec ====================================================================== B D Cat ====================================================================== Weddell seal ====================================================================== Human ct----------------- Chimp ct----------------- Gorilla ct----------------- Orangutan ct----------------- Gibbon ct----------------- Rhesus ct----------------- Crab-eating macaque ct----------------- Baboon ct----------------- Green monkey ct----------------- Marmoset ct----------------- Squirrel monkey ct----------------- Bushbaby ------------------- Chinese tree shrew ca----------------- Squirrel tt----------------- Lesser Egyptian jerboa ct----------------- Chinese hamster ct----------------- Golden hamster ct----------------- Mouse ct----------------- Rat ct----------------- Chinchilla cc----------------- Brush-tailed rat cc----------------- Pika cc----------------- Pig ------------------- Alpaca ------------------- Bactrian camel ------------------- Dolphin ------------------- Killer whale ------------------- Tibetan antelope ------------------- Cow ------------------- Sheep ------------------- Domestic goat ------------------- Horse ------------------- White rhinoceros ------------------- Black flying-fox ------------------- Megabat ------------------- David's myotis (bat) ------------------- Little brown bat ------------------- Hedgehog ------------------- Star-nosed mole ------------------- Elephant --c-atggccatcc----t Manatee --c-gtggtcatcc----t Cape golden mole --taatggccatcc----t Aardvark --a-atggctatcctattt Armadillo --t-gtgg-cgtcc----g Shrew =================== Zebra mbuna =================== Pundamilia nyererei =================== Burton's mouthbreeder =================== Princess of Burundi =================== Nile tilapia =================== Peregrine falcon =================== Saker falcon =================== Mexican tetra (cavefish) =================== Spotted gar =================== Coelacanth =================== Zebrafish =================== Budgerigar =================== Rock pigeon =================== Southern platyfish =================== Medaka =================== Mallard duck =================== Tetraodon =================== Chinese softshell turtle =================== Yellowbelly pufferfish =================== Fugu =================== Chicken =================== Turkey =================== X. tropicalis =================== Painted turtle =================== Atlantic cod =================== American alligator =================== Lizard =================== Stickleback =================== Guinea pig =================== Naked mole-rat =================== Prairie vole ------------------- Cape elephant shrew =================== Panda =================== Wallaby NNNNNNNNNNNNNNNNNNN Tasmanian devil =================== Platypus =================== Green seaturtle =================== Big brown bat ------------------- Rabbit =================== Opossum =================== Pacific walrus =================== Ferret =================== Dog =================== Tenrec =================== Cat =================== Weddell seal =================== Alignment block 14 of 530 in window, 25160695 - 25160697, 3 bps B D Human ag--a-- B D Chimp ag--a-- B D Gorilla ag--a-- B D Orangutan ag--a-- B D Gibbon ag--a-- B D Rhesus ag--a-- B D Crab-eating macaque ag--a-- B D Baboon ag--a-- B D Green monkey ag--a-- B D Marmoset ag--a-- B D Squirrel monkey gg--a-- Chinese tree shrew ct--g-- B D Squirrel ca----- Lesser Egyptian jerboa ca----- B D Chinese hamster a------ Golden hamster a------ B D Mouse ag----- B D Rat ag----- Chinchilla agg---- Brush-tailed rat ag----- B D Pika gg-a--- B D Hedgehog ----c-- Star-nosed mole ----a-- B D Elephant ----agg B D Manatee ----acg Cape golden mole ----agg Aardvark ----atg B D Armadillo ----aga B D Shrew ======= Zebra mbuna ======= Pundamilia nyererei ======= Burton's mouthbreeder ======= Princess of Burundi ======= B D Nile tilapia ======= D Peregrine falcon ======= D Saker falcon ======= Mexican tetra (cavefish) ======= Spotted gar ======= B D Coelacanth ======= B D Zebrafish ======= B D Budgerigar ======= D Rock pigeon ======= Southern platyfish ======= B D Medaka ======= D Mallard duck ======= B D Tetraodon ======= D Chinese softshell turtle ======= Yellowbelly pufferfish ======= B D Fugu ======= B D Chicken ======= B D Turkey ======= B D X. tropicalis ======= D Painted turtle ======= B D Atlantic cod ======= B D American alligator ======= B D Lizard ======= B D Stickleback ======= B D Guinea pig ======= B D Naked mole-rat ======= Prairie vole ------- Cape elephant shrew ======= B D Panda ======= Domestic goat ------- B D Sheep ------- B D Wallaby NNNNNNN B D Tasmanian devil ======= B D Platypus ======= D Green seaturtle ======= B D Cow ------- Tibetan antelope ------- D Little brown bat ------- David's myotis (bat) ------- Big brown bat ------- Black flying-fox ------- B D Megabat ------- B D Pig ------- B D Rabbit ======= B D Opossum ======= Pacific walrus ======= B D Ferret ======= Bactrian camel ------- B D Alpaca ------- B D Dog ======= B D Tenrec ======= B D Cat ======= B D Horse ------- Weddell seal ======= B D White rhinoceros ------- Killer whale ------- B D Dolphin ------- B D Bushbaby ------- Inserts between block 14 and 15 in window B D Squirrel 43bp Lesser Egyptian jerboa 41bp B D Mouse 7bp B D Rat 7bp Chinchilla 3bp Brush-tailed rat 2bp B D Pika 8bp B D Hedgehog 2bp Star-nosed mole 2bp Alignment block 15 of 530 in window, 25160698 - 25160704, 7 bps B D Human ggtgc-tg B D Chimp ggtgc-tg B D Gorilla ggtgc-tg B D Orangutan ggtgc-tg B D Gibbon ggtgc-tg B D Rhesus ggtgt-tg B D Crab-eating macaque ggtgt-tg B D Baboon ggtgt-tg B D Green monkey ggtgt-tg B D Marmoset ggtgt-tg B D Squirrel monkey ggtgt-tg Chinese tree shrew ggtgt-tg B D Squirrel ggact-ga Lesser Egyptian jerboa ggaca-ga Prairie vole ggaca-ga B D Chinese hamster ggaca-ga Golden hamster ggaca-aa B D Mouse ggaca-ga B D Rat ggaca-ga B D Naked mole-rat ggtgc-ca Chinchilla gctgg-ca Brush-tailed rat gttga-ca B D Pika gcaga-ga B D Pig ------tg B D Alpaca ------tg Bactrian camel ------tg B D Dolphin ------tg Killer whale ------tg Tibetan antelope ------ca B D Cow ------tg B D Sheep ------cg Domestic goat ------ca B D Horse ------tg B D White rhinoceros ------tg B D Cat gggcggtg Black flying-fox ------tg B D Megabat ------tg David's myotis (bat) ------tg D Little brown bat ------tg B D Hedgehog agtgcgct Star-nosed mole gggaagtg B D Elephant agtgt-ta B D Manatee ggtgc-tg Cape golden mole aatgt-tg Aardvark ggtgc-tg B D Armadillo ggtgt-tg B D Shrew ======== Zebra mbuna ======== Pundamilia nyererei ======== Burton's mouthbreeder ======== Princess of Burundi ======== B D Nile tilapia ======== D Peregrine falcon ======== D Saker falcon ======== Mexican tetra (cavefish) ======== Spotted gar ======== B D Coelacanth ======== B D Zebrafish ======== B D Budgerigar ======== D Rock pigeon ======== Southern platyfish ======== B D Medaka ======== D Mallard duck ======== B D Tetraodon ======== D Chinese softshell turtle ======== Yellowbelly pufferfish ======== B D Fugu ======== B D Chicken ======== B D Turkey ======== B D X. tropicalis ======== D Painted turtle ======== B D Atlantic cod ======== B D American alligator ======== B D Lizard ======== B D Stickleback ======== B D Guinea pig ======== Cape elephant shrew ======== B D Panda ======== B D Wallaby NNNNNNNN B D Tasmanian devil ======== B D Platypus ======== D Green seaturtle ======== Big brown bat -------- B D Rabbit ======== B D Opossum ======== Pacific walrus ======== B D Ferret ======== B D Dog ======== B D Tenrec ======== Weddell seal ======== B D Bushbaby -------- Inserts between block 15 and 16 in window B D Manatee 841bp Cape golden mole 1222bp Aardvark 780bp Alignment block 16 of 530 in window, 25160705 - 25160713, 9 bps B D Human ga------g-cca---cc-----------------c B D Chimp ga------g-cca---cc-----------------c B D Gorilla ga------g-cca---cc-----------------c B D Orangutan ga------g-cca---cc-----------------c B D Gibbon ga------g-cca---cc-----------------c B D Rhesus ga------g-cca---cc-----------------c B D Crab-eating macaque ga------g-cca---cc-----------------c B D Baboon ga------g-cca---ct-----------------c B D Green monkey ga------g-cca---cc-----------------c B D Marmoset ga------g-cca---cc-----------------c B D Squirrel monkey ga------g-cca---cc-----------------c B D Bushbaby -----------------c-----------------c Chinese tree shrew gacgtgggg-cca---tt-----------------c B D Squirrel aa------g-cca---cc-----------------c Lesser Egyptian jerboa aa------g-cta---cc-----------------c Prairie vole ga------atcca---cc-----------------c B D Chinese hamster ga------a-caacagcc-----------------c Golden hamster ga------a-caa---cc-----------------c B D Mouse ga------a-cca---cc-----------------c B D Rat ga------a-cca---cc-----------------c B D Naked mole-rat aa------a-aca---cc-----------------c Chinchilla ag------g-cca---cc-----------------t Brush-tailed rat ga------g-cca---cc-----------------t B D Pika gg------a-ctc---cccctgccctgccctgcctc B D Pig cc------g-cca---cc-----------------c B D Alpaca ca------g-cca---cc-----------------t Bactrian camel ca------g-cca---cc-----------------t B D Dolphin ta------g-cca---ta-----------------c Killer whale ta------g-cca---ta-----------------c Tibetan antelope ca------g--ca---ca-----------------c B D Cow ca------g--ca---ca-----------------c B D Sheep ca------g--ca---ca-----------------c Domestic goat ca------g--ca---ca-----------------c B D Horse ta------g-cca---cc-----------------c B D White rhinoceros ta------g-cca---cc-----------------c B D Cat gg------g-aga---cc-----------------c Black flying-fox ta------g-cca---tc-----------------c B D Megabat ta------g-cca---tc-----------------c Big brown bat -----------------------------------c David's myotis (bat) ta------g-cca---cc-----------------c D Little brown bat ta------a-cca---cc-----------------c B D Hedgehog ta------a-cc----cg-----------------c Star-nosed mole ta------g-cca---cc-----------------c B D Elephant -a------g-act---cc-----------------t B D Manatee ga------g-tca---cc-----------------t Aardvark ga------g-cca---cc-----------------c B D Armadillo ----------gct---cc-----------------t B D Shrew ==================================== Zebra mbuna ==================================== Pundamilia nyererei ==================================== Burton's mouthbreeder ==================================== Princess of Burundi ==================================== B D Nile tilapia ==================================== D Peregrine falcon ==================================== D Saker falcon ==================================== Mexican tetra (cavefish) ==================================== Spotted gar ==================================== B D Coelacanth ==================================== B D Zebrafish ==================================== B D Budgerigar ==================================== D Rock pigeon ==================================== Southern platyfish ==================================== B D Medaka ==================================== D Mallard duck ==================================== B D Tetraodon ==================================== D Chinese softshell turtle ==================================== Yellowbelly pufferfish ==================================== B D Fugu ==================================== B D Chicken ==================================== B D Turkey ==================================== B D X. tropicalis ==================================== D Painted turtle ==================================== B D Atlantic cod ==================================== B D American alligator ==================================== B D Lizard ==================================== B D Stickleback ==================================== B D Guinea pig ==================================== Cape elephant shrew ==================================== B D Panda ==================================== B D Wallaby NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN B D Tasmanian devil ==================================== B D Platypus ==================================== D Green seaturtle ==================================== B D Rabbit ==================================== B D Opossum ==================================== Pacific walrus ==================================== B D Ferret ==================================== B D Dog ==================================== B D Tenrec ==================================== Weddell seal ==================================== Cape golden mole ==================================== Inserts between block 16 and 17 in window B D Elephant 1082bp B D Armadillo 907bp Alignment block 17 of 530 in window, 25160714 - 25160735, 22 bps B D Human tgtgccttca----cccaaa---ctatct B D Chimp tgtgccttca----cccaaa---ctatct B D Gorilla tgcgctttca----cccaaa---ctatct B D Orangutan tgagccttca----cccaaa---ctatct B D Gibbon tgagccttca----cccaaa---ctatct B D Rhesus tgagccttca----cccaaa---ctatct B D Crab-eating macaque tgagccttca----cccaaa---ctatct B D Baboon tgagccttca----cccaaa---ctatct B D Green monkey tgagccttca----cccaaa---ctatct B D Marmoset ggagccgtca----cccaaa---ctatta B D Squirrel monkey tgagccgtca----cccgaa---ctattc B D Bushbaby tgagccatca----cccaaa---ccattt Chinese tree shrew cgagtcacca----ctcaat---ctactt B D Squirrel tgagtcatt-------caaa---ctagtt Lesser Egyptian jerboa tgagccggc-------caaa---ctattt Prairie vole ggaaccacc-------caaa---ctatct B D Chinese hamster tgagtcctc-------caaa---ctatct Golden hamster tgagccctc-------caaa---ctatct B D Mouse tgggccacc-------caaa---ctatct B D Rat tgagccatc-------caaa---ctatct B D Naked mole-rat aaaaccatc--------aggtgcctgaag Chinchilla cagaccacc--------------ctgagg Brush-tailed rat tggaccatc--------aaa---ctatcg B D Pika tgggccatcg----caggaa---ctatgg B D Pig agag-catca----gccaaa---ctcttt B D Alpaca tgaggcatca----cccaaa---ccgttt Bactrian camel tgaggcatca----cccaaa---ccgttt B D Dolphin tgagccatca----cccaaa---ctattt Killer whale tgagccatca----cccaaa---ctattt Tibetan antelope tgagccatca----cc-------ttatct B D Cow tgagccatca----cc-------ttattt B D Sheep tgagccatca----cc-------ttattt Domestic goat tgagccatca----cc-------ttattt B D Horse tgagccatca----cccaaa---ctattt B D White rhinoceros tgagccatca----cccaaa---ctattt B D Cat tgcaccct--------------------- Black flying-fox tgagccatca----cctaaa---cgatgt B D Megabat tgagccatca----cctaaa---cgatgt Big brown bat tgagccatca----cctcaa---ctacct David's myotis (bat) tgagccatcc----cctcaa---ctacct D Little brown bat tgagccatcc----cctcaa---ctacct B D Hedgehog tgcgctaccg----ccca-a---ctcccc Star-nosed mole cgcgccatca----cccaga---ctgcct B D Manatee ggagacatcagcattccaaa---ccattt Aardvark tcagccatcagcatcccaaa---tcattt B D Shrew ============================= Zebra mbuna ============================= Pundamilia nyererei ============================= Burton's mouthbreeder ============================= Princess of Burundi ============================= B D Nile tilapia ============================= D Peregrine falcon ============================= D Saker falcon ============================= Mexican tetra (cavefish) ============================= Spotted gar ============================= B D Coelacanth ============================= B D Zebrafish ============================= B D Budgerigar ============================= D Rock pigeon ============================= Southern platyfish ============================= B D Medaka ============================= D Mallard duck ============================= B D Tetraodon ============================= D Chinese softshell turtle ============================= Yellowbelly pufferfish ============================= B D Fugu ============================= B D Chicken ============================= B D Turkey ============================= B D X. tropicalis ============================= D Painted turtle ============================= B D Atlantic cod ============================= B D American alligator ============================= B D Lizard ============================= B D Stickleback ============================= B D Guinea pig ============================= Cape elephant shrew ============================= B D Panda ============================= B D Wallaby NNNNNNNNNNNNNNNNNNNNNNNNNNNNN B D Tasmanian devil ============================= B D Platypus ============================= D Green seaturtle ============================= B D Rabbit ============================= B D Opossum ============================= Pacific walrus ============================= B D Ferret ============================= B D Dog ============================= B D Tenrec ============================= B D Armadillo ============================= B D Elephant ============================= Weddell seal ============================= Cape golden mole ============================= Alignment block 18 of 530 in window, 25160736 - 25160737, 2 bps B D Human ga B D Chimp ga B D Gorilla ga B D Orangutan ga B D Gibbon ga B D Rhesus ga B D Crab-eating macaque ga B D Baboon ga B D Green monkey ga B D Marmoset ga B D Squirrel monkey ga B D Bushbaby gg Chinese tree shrew cg B D Squirrel gg Lesser Egyptian jerboa gg Prairie vole gt B D Chinese hamster gc Golden hamster gc B D Mouse ag B D Rat ag B D Naked mole-rat ac Chinchilla ac Brush-tailed rat gc B D Pika ag B D Pig ga B D Alpaca gg Bactrian camel gg B D Dolphin ga Killer whale ga Tibetan antelope ga B D Cow ga B D Sheep ga Domestic goat ga B D Horse gc B D White rhinoceros gg B D Ferret ga Black flying-fox gg B D Megabat gg Big brown bat gg David's myotis (bat) gg D Little brown bat gg B D Hedgehog ta Star-nosed mole gg B D Manatee gg Aardvark gg B D Shrew == Zebra mbuna == Pundamilia nyererei == Burton's mouthbreeder == Princess of Burundi == B D Nile tilapia == D Peregrine falcon == D Saker falcon == Mexican tetra (cavefish) == Spotted gar == B D Coelacanth == B D Zebrafish == B D Budgerigar == D Rock pigeon == Southern platyfish == B D Medaka == D Mallard duck == B D Tetraodon == D Chinese softshell turtle == Yellowbelly pufferfish == B D Fugu == B D Chicken == B D Turkey == B D X. tropicalis == D Painted turtle == B D Atlantic cod == B D American alligator == B D Lizard == B D Stickleback == B D Guinea pig == Cape elephant shrew == B D Panda == B D Wallaby NN B D Tasmanian devil == B D Platypus == D Green seaturtle == B D Rabbit == B D Opossum == Pacific walrus == B D Dog == B D Tenrec == B D Armadillo == B D Cat -- B D Elephant == Weddell seal == Cape golden mole == Alignment block 19 of 530 in window, 25160738 - 25160763, 26 bps B D Human tc---------c-------------------------------------ctcgaagatccatttg----- B D Chimp tc---------c-------------------------------------ctcgaagatccatttg----- B D Gorilla tc---------c-------------------------------------ctcgaagatccatttg----- B D Orangutan tc---------c-------------------------------------cttgaagatccatttg----- B D Gibbon tc---------c-------------------------------------cttgaagatccatttg----- B D Rhesus tc---------c-------------------------------------cttgaagatccatttg----- B D Crab-eating macaque tc---------c-------------------------------------cttgaagatccatttg----- B D Baboon tc---------c-------------------------------------cttgaagatccatttg----- B D Green monkey tc---------c-------------------------------------cttgaagatccatttg----- B D Marmoset tc---------c-------------------------------------cttgaagatccatttg----- B D Squirrel monkey tt---------c-------------------------------------cttgaagatccatttg----- B D Bushbaby tt---------c-------------------------------------cctgaagatccgcttat---- Chinese tree shrew tc---------c-------------------------------------attta--------ttg----- B D Squirrel tc---------c-------------------------------------cctgaagatcca-tgg----- Lesser Egyptian jerboa tc---------t-------------------------------------cttgaagattctctta----- Prairie vole cccaccccca-c-------------------------------------c--cccgagtcatttg----- B D Chinese hamster ctcccccacg-c-------------------------------------caacccgagtcatttg----- Golden hamster ctcccccactcc-------------------------------------caccccgagtcatttg----- B D Mouse tccc-------c-------------------------------------caccaagagt-gtttg----- B D Rat tccc-------c-------------------------------------caccaagagt-atttg----- B D Naked mole-rat cc---------a-------------------------------------cccattgggctg-ggg----- Chinchilla cc---------a-------------------------------------catactgggc---ggg----- Brush-tailed rat cc---------c-------------------------------------t-------gc---agg----- B D Pig cc-----------------------------------------------ctcaaagacacttttactg-- B D Alpaca tc---------c-------------------------------------cttgaagacccatttatta-- Bactrian camel tc---------c-------------------------------------cttgaagacccatttatta-- B D Dolphin cc---------c-------------------------------------cttgaagccccacttgtca-- Killer whale cc---------c-------------------------------------cttgaagccccacttgtca-- Tibetan antelope cc---------c-------------------------------------ctagtagacccatttgcta-- B D Cow cc---------t-------------------------------------ctagaagacccatttgcta-- B D Sheep cc-----------------------------------------------ctagtagacccatttgcta-- Domestic goat cc-----------------------------------------------ctagtggacccatttgcta-- B D Horse cc---------c-------------------------------------cttgaagacccattt------ B D White rhinoceros cc---------c-------------------------------------cttgaagacccatct------ B D Cat tc---------c-------------------------------------ctttaagacccac-------- B D Dog tc---------c-------------------------------------ctttcagacccac-------- B D Ferret tt---------c-------------------------------------ccctaacacccat-------- B D Panda tc---------c-------------------------------------ctttaagacccac-------- Pacific walrus tc---------c-------------------------------------ctttaagacccat-------- Weddell seal tc---------c-------------------------------------ctttaagacccat-------- Black flying-fox cc---------c-------------------------------------cttaaagacccatttatt--- B D Megabat cc---------c-------------------------------------cttgaagacccatttatt--- Big brown bat cc---------c-------------------------------------cctgcagactcactgatt--- David's myotis (bat) cc---------c-------------------------------------tttgtagatgcatttatt--- D Little brown bat cc---------c-------------------------------------cttgtggacacattgact--- B D Hedgehog tc---------tctctctttcatacattttccttgacacatcagtgatcggtgtgtccccctccccccag Star-nosed mole tc---------t-------------------------------------gttgaagacccct-------- B D Manatee tc---------c-------------------------------------cttgacggcccatgtatgggg Aardvark tc---------c-------------------------------------tttgaaggtccatgtattgga B D Shrew ====================================================================== Zebra mbuna ====================================================================== Pundamilia nyererei ====================================================================== Burton's mouthbreeder ====================================================================== Princess of Burundi ====================================================================== B D Nile tilapia ====================================================================== D Peregrine falcon ====================================================================== D Saker falcon ====================================================================== Mexican tetra (cavefish) ====================================================================== Spotted gar ====================================================================== B D Coelacanth ====================================================================== B D Zebrafish ====================================================================== B D Budgerigar ====================================================================== D Rock pigeon ====================================================================== Southern platyfish ====================================================================== B D Medaka ====================================================================== D Mallard duck ====================================================================== B D Tetraodon ====================================================================== D Chinese softshell turtle ====================================================================== Yellowbelly pufferfish ====================================================================== B D Fugu ====================================================================== B D Chicken ====================================================================== B D Turkey ====================================================================== B D X. tropicalis ====================================================================== D Painted turtle ====================================================================== B D Atlantic cod ====================================================================== B D American alligator ====================================================================== B D Lizard ====================================================================== B D Stickleback ====================================================================== B D Guinea pig ====================================================================== Cape elephant shrew ====================================================================== B D Wallaby NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN B D Tasmanian devil ====================================================================== B D Platypus ====================================================================== D Green seaturtle ====================================================================== B D Rabbit ====================================================================== B D Opossum ====================================================================== B D Pika ---------------------------------------------------------------------- B D Tenrec ====================================================================== B D Armadillo ====================================================================== B D Elephant ====================================================================== Cape golden mole ====================================================================== Human ---------ggggtgg Chimp ---------ggggtgg Gorilla ---------ggggtgg Orangutan ---------ggggtgg Gibbon ---------ggggtgg Rhesus ---------ggggtag Crab-eating macaque ---------ggggtag Baboon ---------ggggtag Green monkey ---------ggggtag Marmoset ---------gggt--g Squirrel monkey ---------gggt--g Bushbaby ---------ggggcaa Chinese tree shrew ---------ggggtga Squirrel ---------ctgg--- Lesser Egyptian jerboa ---------ctatgga Prairie vole ---------ctggggc Chinese hamster ---------ctgggac Golden hamster ---------ctggggc Mouse ---------ctggggc Rat ---------ctggggg Naked mole-rat ---------acgt--- Chinchilla ---------ctgg--- Brush-tailed rat ---------gtga--- Pig ---------gggc--- Alpaca ---------ggag--- Bactrian camel ---------ggag--- Dolphin ---------cggg--- Killer whale ---------tggg--- Tibetan antelope ---------gggg--- Cow ---------gggg--- Sheep ---------gggg--- Domestic goat ---------gggg--- Horse ----------atg--- White rhinoceros ----------atg--- Cat ----------gga--- Dog ----------ggg--- Ferret ------------g--- Panda ----------agg--- Pacific walrus ----------ggg--- Weddell seal ----------ggg--- Black flying-fox ---------gagg--- Megabat ---------gagg--- Big brown bat ---------gagg--- David's myotis (bat) ---------gagg--- Little brown bat ---------gagg--- Hedgehog tcaatgaagggtg--- Star-nosed mole ---------ggag--- Manatee a--------tggg--- Aardvark g--------ggaa--- Shrew ================ Zebra mbuna ================ Pundamilia nyererei ================ Burton's mouthbreeder ================ Princess of Burundi ================ Nile tilapia ================ Peregrine falcon ================ Saker falcon ================ Mexican tetra (cavefish) ================ Spotted gar ================ Coelacanth ================ Zebrafish ================ Budgerigar ================ Rock pigeon ================ Southern platyfish ================ Medaka ================ Mallard duck ================ Tetraodon ================ Chinese softshell turtle ================ Yellowbelly pufferfish ================ Fugu ================ Chicken ================ Turkey ================ X. tropicalis ================ Painted turtle ================ Atlantic cod ================ American alligator ================ Lizard ================ Stickleback ================ Guinea pig ================ Cape elephant shrew ================ Wallaby NNNNNNNNNNNNNNNN Tasmanian devil ================ Platypus ================ Green seaturtle ================ Rabbit ================ Opossum ================ Pika ---------------- Tenrec ================ Armadillo ================ Elephant ================ Cape golden mole ================ Inserts between block 19 and 20 in window Lesser Egyptian jerboa 165bp Prairie vole 4bp B D Chinese hamster 4bp Golden hamster 4bp B D Mouse 4bp B D Rat 4bp B D Naked mole-rat 2bp Chinchilla 2bp Brush-tailed rat 2bp B D Pig 1bp B D Alpaca 1bp Bactrian camel 1bp B D Dolphin 1bp Killer whale 1bp Tibetan antelope 1bp B D Cow 1bp B D Sheep 1bp Domestic goat 1bp B D Horse 1bp B D White rhinoceros 1bp B D Cat 1bp B D Dog 1bp B D Ferret 1bp B D Panda 1bp Pacific walrus 1bp Weddell seal 1bp Black flying-fox 1bp B D Megabat 1bp Big brown bat 1bp David's myotis (bat) 1bp D Little brown bat 1bp B D Hedgehog 1bp Star-nosed mole 1bp Alignment block 20 of 530 in window, 25160764 - 25160794, 31 bps B D Human g-ggc--------------a--gg-----aa------gcaca---ttttc-------------------- B D Chimp g-ggc--------------a--gg-----aa------gcaca---ttttc-------------------- B D Gorilla g-ggc--------------a--gg-----aa------gcaca---ttttc-------------------- B D Orangutan g-ggc--------------a--gg-----aa------gcaca---ttttc-------------------- B D Gibbon g-ggc--------------a--gg-----ag------gcaca---ttttc-------------------- B D Rhesus g-ggg--------------a--gg-----aa------gcaca---ttttc-------------------- B D Crab-eating macaque g-ggg--------------a--gg-----aa------gcaca---ttttc-------------------- B D Baboon g-ggg--------------a--gg-----aa------gcaaa---ttttc-------------------- B D Green monkey g-ggg--------------a--gg-----aa------gcaca---ttttc-------------------- B D Marmoset g-ggg--------------a--gg-----aa------gcaca---ttttt-------------------- B D Squirrel monkey g-ggg--------------a--gg-----aa------gcaca---ttttc-------------------- B D Bushbaby g-gga--------------a--gg-----aa------gcacg---ttttc-------------------- Chinese tree shrew c-agg--------------a--gg-----aa------atgcctttttttc-------------------- B D Squirrel --agg--------------g--ag-----ga--------agg---tcgtc-------------------- Lesser Egyptian jerboa --ggg--------------c--ag-----aa------ctaca---ttttc-------------------- Prairie vole --ggg--------------t--ag-----ag------gtatg---ttttc-------------------- B D Chinese hamster --ggg--------------t--ag-----agtttttgttttg---ttttg-------------------- Golden hamster --ggg--------------t--ag-----aagtttttgtttg---ttttt-------------------- B D Mouse --agg--------------t--tg-----ag------aaatg---ttttc-------------------- B D Rat --ggg--------------t--tg-----ag--------atg---ttttc-------------------- B D Naked mole-rat --gcg--------------t--gg-----aa------ggaca---cgttc-------------------- Chinchilla --gcg--------------t--gg-----ag------gggca---cgttc-------------------- Brush-tailed rat --gca--------------t--gg-----aa------gggca---cgttc-------------------- B D Pika -------------------------------------gggca---tttcc-------------------- B D Pig g-gga--------------g--gg-----aa------gaacc---ttttc-------------------- B D Alpaca gcgga--------------a--ga-----aa------gtaca---ttttc-------------------- Bactrian camel gggga--------------a--ga-----aa------gtaca---ttttc-------------------- B D Dolphin g---------------------gg-----aa------ataca---ttttc-------------------- Killer whale g---------------------gg-----aa------atacg---ttttc-------------------- Tibetan antelope g-gga--------------a--gg-----aa------gtaca---ctttc-------------------- B D Cow g-ggg--------------a--gg-----aa------gtacc---ctttc-------------------- B D Sheep g-gga--------------a--gg-----aa------gtaca---ctttc-------------------- Domestic goat a-gga--------------a--gg-----aa------gtaca---ctttc-------------------- B D Horse g-ag------------------gg-----ga------gtaca---ttttc-------------------- B D White rhinoceros g--g------------------ga-----ga------ataca-----ttc-------------------- B D Cat g-g-------------------at-----gg------gca------------------------------ B D Dog g-aca--------------aggaa-----gg------gtacg---ttttc-------------------- B D Ferret g-gt------------------gg-----gg------gtaca---tcttc-------------------- B D Panda g-gc------------------gg-----gg------gtaca---ttttc-------------------- Pacific walrus g-at------------------gc-----gg------gtaca---ttttc-------------------- Weddell seal g-gc------------------gg-----gg------gcaca---ttttc-------------------- Black flying-fox g-gta--------------g--gg-----ag------ataca---tttct-------------------- B D Megabat g-gta--------------g--gg-----ag------ataca---tctct-------------------- Big brown bat g-aca--------------g--ga-----aa------ggacg---tttcc-------------------- David's myotis (bat) g-aca--------------g--ga-----aa------gtaca---tttcc-------------------- D Little brown bat g-aca--------------g--ga-----aa------gtaca---tttcc-------------------- B D Hedgehog g-aaatgcagtcgcccttca--agtcatcaa------gtgca---ttgtccctactgaaaacccaggtgg Star-nosed mole g-gaaggca----------a--ag-----ga------gtcca---ttttc-------------------- B D Manatee g-gga--------------g--gg-----gt------agaac---ttatc-------------------- Aardvark a-ggg--------------g--gg-----gt------agact---ttttc-------------------- B D Shrew ====================================================================== Zebra mbuna ====================================================================== Pundamilia nyererei ====================================================================== Burton's mouthbreeder ====================================================================== Princess of Burundi ====================================================================== B D Nile tilapia ====================================================================== D Peregrine falcon ====================================================================== D Saker falcon ====================================================================== Mexican tetra (cavefish) ====================================================================== Spotted gar ====================================================================== B D Coelacanth ====================================================================== B D Zebrafish ====================================================================== B D Budgerigar ====================================================================== D Rock pigeon ====================================================================== Southern platyfish ====================================================================== B D Medaka ====================================================================== D Mallard duck ====================================================================== B D Tetraodon ====================================================================== D Chinese softshell turtle ====================================================================== Yellowbelly pufferfish ====================================================================== B D Fugu ====================================================================== B D Chicken ====================================================================== B D Turkey ====================================================================== B D X. tropicalis ====================================================================== D Painted turtle ====================================================================== B D Atlantic cod ====================================================================== B D American alligator ====================================================================== B D Lizard ====================================================================== B D Stickleback ====================================================================== B D Guinea pig ====================================================================== Cape elephant shrew ====================================================================== B D Wallaby NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN B D Tasmanian devil ====================================================================== B D Platypus ====================================================================== D Green seaturtle ====================================================================== B D Rabbit ====================================================================== B D Opossum ====================================================================== B D Tenrec ====================================================================== B D Armadillo ====================================================================== B D Elephant ====================================================================== Cape golden mole ====================================================================== Human -----------ctt-tcacgctca Chimp -----------ctt-tcacgctca Gorilla -----------ctt-tcacgctca Orangutan -----------ctt-tcacgc--- Gibbon -----------ctt-tcacgctca Rhesus -----------ctt-acatgctca Crab-eating macaque -----------ctt-acatgctca Baboon -----------ctt-acatgctca Green monkey -----------ctt-acatgctca Marmoset -----------ctt-ccacgctca Squirrel monkey -----------ctt-ccacgctca Bushbaby -----------ttt-ccatttgca Chinese tree shrew -----------cat-tctggctat Squirrel -----------ttt-ccattttat Lesser Egyptian jerboa -----------ttt--aattttag Prairie vole -----------ttt---------- Chinese hamster -----------ttttttgttttgt Golden hamster -----------ttttggagttttt Mouse -----------ttt---------- Rat -----------ttg---------- Naked mole-rat -----------ttc-ccactctac Chinchilla -----------ctc-ctgctctat Brush-tailed rat -----------ttc-c--ctctat Pika -----------ctc-c-------- Pig -----------ttt-tcattccca Alpaca -----------ttt-tcacttccc Bactrian camel -----------ttt-tcatttccc Dolphin -----------ttt-tcattccca Killer whale -----------ttt-tcattccca Tibetan antelope -----------ctt-tgattctca Cow -----------ctt-tgattctca Sheep -----------ctt-tgattctca Domestic goat -----------ctt-tgattctca Horse -----------ctt-ccattccta White rhinoceros -----------ttt-ccattccta Cat -----------ttt-tcattccca Dog -----------ttt-ccattccca Ferret -----------tct-tcattccca Panda -----------ttt-tcattccca Pacific walrus -----------ttt-tcatttcca Weddell seal -----------ttt-tcattccca Black flying-fox -----------ttc-ccagtccca Megabat -----------ttc-ccagtccca Big brown bat -----------ttt-ccggggcca David's myotis (bat) -----------ttt-ccatcgctg Little brown bat -----------ttt-ccatggcca Hedgehog agaagggagagtgt-tattttctt Star-nosed mole -----------tgt-ccatttctg Manatee -----------ttc-ccattttca Aardvark -----------ttc-ccattttca Shrew ======================== Zebra mbuna ======================== Pundamilia nyererei ======================== Burton's mouthbreeder ======================== Princess of Burundi ======================== Nile tilapia ======================== Peregrine falcon ======================== Saker falcon ======================== Mexican tetra (cavefish) ======================== Spotted gar ======================== Coelacanth ======================== Zebrafish ======================== Budgerigar ======================== Rock pigeon ======================== Southern platyfish ======================== Medaka ======================== Mallard duck ======================== Tetraodon ======================== Chinese softshell turtle ======================== Yellowbelly pufferfish ======================== Fugu ======================== Chicken ======================== Turkey ======================== X. tropicalis ======================== Painted turtle ======================== Atlantic cod ======================== American alligator ======================== Lizard ======================== Stickleback ======================== Guinea pig ======================== Cape elephant shrew ======================== Wallaby NNNNNNNNNNNNNNNNNNNNNNNN Tasmanian devil ======================== Platypus ======================== Green seaturtle ======================== Rabbit ======================== Opossum ======================== Tenrec ======================== Armadillo ======================== Elephant ======================== Cape golden mole ======================== Inserts between block 20 and 21 in window B D Bushbaby 4bp Prairie vole 4bp B D Manatee 5bp Aardvark 5bp Alignment block 21 of 530 in window, 25160795 - 25160806, 12 bps B D Human ct--aagtcctgtg B D Chimp ct--aagtcctgtg B D Gorilla tt--aagtcctgtg B D Orangutan -t--aagtcctgtg B D Gibbon ct--acgtcctgtg B D Rhesus ct--acatcccggg B D Crab-eating macaque ct--acgtcccggg B D Baboon ct--acgtcccggg B D Green monkey ct--acgtcccggg B D Marmoset ct--acgttctgtg B D Squirrel monkey ct--acgtcctgtg B D Bushbaby ct--atgtcctgtg Chinese tree shrew ct--ctatcctatg B D Squirrel cc--ccatctaatg Lesser Egyptian jerboa ct--acatccaacg B D Chinese hamster tt------------ Golden hamster at------------ B D Naked mole-rat cg--cccgctaacg Chinchilla ct--ccttct---g Brush-tailed rat tt--ccttctaacg B D Pig ct--gtgtcctatg B D Alpaca ct--atatcctatg Bactrian camel ct--atatcctatg B D Dolphin ct--atatcctatg Killer whale ct--gtatcctatg Tibetan antelope gt--atatcctgtt B D Cow gt--atatcctgtt B D Sheep gt--atatcctgtt Domestic goat gt--atatcctgtt B D Horse ct--atgtcccatg B D White rhinoceros ct--atgtcctgtg B D Cat cg--atgacctata B D Dog at--gtgtcctatg B D Ferret ct--gtgtcctaga B D Panda ct--atgtcctata Pacific walrus ct--acgtcctata Weddell seal ct--gtgtcctata Black flying-fox ct--ccatcctatg B D Megabat ct--ccatcctatg Big brown bat ct--ccg-tctgtg David's myotis (bat) ct--ctg-cctgtg D Little brown bat ct--ctg-cctgtg B D Hedgehog cttgttacccc--- Star-nosed mole ct------------ B D Manatee ct--atgccttatg Cape golden mole ct--ataccttatg Aardvark tt--atgtcttaag B D Rat -------------- B D Shrew ============== B D Mouse -------------- Zebra mbuna ============== Pundamilia nyererei ============== Burton's mouthbreeder ============== Princess of Burundi ============== B D Nile tilapia ============== D Peregrine falcon ============== D Saker falcon ============== Mexican tetra (cavefish) ============== Spotted gar ============== B D Coelacanth ============== B D Zebrafish ============== B D Budgerigar ============== D Rock pigeon ============== Southern platyfish ============== B D Medaka ============== D Mallard duck ============== B D Tetraodon ============== D Chinese softshell turtle ============== Yellowbelly pufferfish ============== B D Fugu ============== B D Chicken ============== B D Turkey ============== B D X. tropicalis ============== D Painted turtle ============== B D Atlantic cod ============== B D American alligator ============== B D Lizard ============== B D Stickleback ============== B D Guinea pig ============== Prairie vole ============== Cape elephant shrew ============== B D Wallaby NNNNNNNNNNNNNN B D Tasmanian devil ============== B D Platypus ============== D Green seaturtle ============== B D Rabbit ============== B D Opossum ============== B D Pika -------------- B D Tenrec ============== B D Armadillo ============== B D Elephant ============== Alignment block 22 of 530 in window, 25160807 - 25160817, 11 bps B D Human aaatat---cctac B D Chimp aaatat---cctac B D Gorilla aaatat---cctac B D Orangutan aaatat---cctac B D Gibbon aaatat---cctac B D Rhesus aaatag---cttac B D Crab-eating macaque aaatag---cttac B D Baboon aaatag---cctac B D Green monkey aaatag---cctac B D Marmoset aaatat---cctac B D Squirrel monkey aaatct---cctac B D Bushbaby aaatat---tctac Chinese tree shrew aaataa---actat B D Squirrel aa--ac---acagt Lesser Egyptian jerboa aa--at---actac B D Chinese hamster ----tc---actac Golden hamster ----gc---actgc B D Mouse ----ac---attct B D Rat ----ac---actct B D Naked mole-rat aaatat---gctac Chinchilla agatac---gctac Brush-tailed rat agctat---gcaac B D Pika ----ag---gctat B D Pig aaacataccactac B D Alpaca aaacat---actac Bactrian camel aaacat---actac B D Dolphin aaacat---actac Killer whale aaacat---actac Tibetan antelope aaacat---actaa B D Cow aaacat---accaa B D Sheep aaacat---actaa Domestic goat aaacat---actaa B D Horse tgacag---actcc B D White rhinoceros taacag---actac B D Cat aaacgt---actac B D Dog aattat---actgc B D Ferret aaatac---acttc B D Panda aaatat---actac Pacific walrus aaatat---actac Weddell seal aaatat---actac Black flying-fox aaatac---actgc B D Megabat aaatac---actgc Big brown bat -catag---actgc David's myotis (bat) -agtat---actgc D Little brown bat -agtat---actgc B D Hedgehog ---aat---gtgac Star-nosed mole ---aag---tctac B D Manatee aaacat---acttc Cape golden mole aaatat---attaa Aardvark aaataa---actac D Chinese softshell turtle aaataa---tctgg B D Shrew ============== Zebra mbuna ============== Pundamilia nyererei ============== Burton's mouthbreeder ============== Princess of Burundi ============== B D Nile tilapia ============== D Peregrine falcon ============== D Saker falcon ============== Mexican tetra (cavefish) ============== Spotted gar ============== B D Coelacanth ============== B D Zebrafish ============== B D Budgerigar ============== D Rock pigeon ============== Southern platyfish ============== B D Medaka ============== D Mallard duck ============== B D Tetraodon ============== Yellowbelly pufferfish ============== B D Fugu ============== B D Chicken ============== B D Turkey ============== B D X. tropicalis ============== D Painted turtle ============== B D Atlantic cod ============== B D American alligator ============== B D Lizard ============== B D Stickleback ============== B D Guinea pig ============== Prairie vole ============== Cape elephant shrew ============== B D Wallaby NNNNNNNNNNNNNN B D Tasmanian devil ============== B D Platypus ============== D Green seaturtle ============== B D Rabbit ============== B D Opossum ============== B D Tenrec ============== B D Armadillo ============== B D Elephant ============== Inserts between block 22 and 23 in window B D Bushbaby 8bp B D Squirrel 3bp Lesser Egyptian jerboa 8bp B D Chinese hamster 5bp Golden hamster 8bp B D Mouse 10bp B D Rat 8bp B D Naked mole-rat 10bp Chinchilla 10bp Brush-tailed rat 10bp B D Pika 8bp B D Pig 8bp B D Alpaca 8bp Bactrian camel 8bp B D Dolphin 8bp Killer whale 8bp Tibetan antelope 8bp B D Cow 8bp B D Sheep 8bp Domestic goat 8bp B D Horse 8bp B D White rhinoceros 8bp B D Cat 8bp B D Dog 8bp B D Ferret 8bp B D Panda 8bp Pacific walrus 8bp Weddell seal 8bp Black flying-fox 8bp B D Megabat 8bp Big brown bat 8bp David's myotis (bat) 8bp D Little brown bat 8bp B D Hedgehog 8bp Star-nosed mole 8bp B D Manatee 8bp Cape golden mole 9bp Aardvark 8bp Alignment block 23 of 530 in window, 25160818 - 25160831, 14 bps B D Human cgcat----ggaaaccac B D Chimp cgcat----ggaaaccac B D Gorilla cgcat----ggaaaccac B D Orangutan cacat----ggaaaccac B D Gibbon cgcat----ggaaaccac B D Rhesus cgcat----ggaaaccac B D Crab-eating macaque cgcat----ggaaaccac B D Baboon cgcat----ggaaaccac B D Green monkey cgcat----ggaaacgac B D Marmoset cacat----ggaaaccac B D Squirrel monkey cacat----ggacaccac B D Bushbaby cacat----ggaaaccat Chinese tree shrew tatgt------------- B D Squirrel cacat----ggaaaccac Lesser Egyptian jerboa cccat----ggaaacc-- Prairie vole cacat----gg------- B D Chinese hamster cacatggtagg------- Golden hamster cacat----gc------- B D Mouse cacgt----ga------- B D Rat cacat----gg------- B D Naked mole-rat cacat----ggaaaccag Chinchilla caaac----ggaaaccgt Brush-tailed rat catat----ggaaaccat B D Pika cacct----aa------- B D Pig cccat----ggaaaccac B D Alpaca cacat----ggaaaccac Bactrian camel cacat----ggaaaccac B D Dolphin cacat----ggaaaccac Killer whale cacat----ggaaaccac Tibetan antelope cacat----ggaaaccac B D Cow cacat----ggaaaccac B D Sheep cacat----ggaaaccac Domestic goat cacat----ggaaaccac B D Horse cacat----ggaaaccat B D White rhinoceros cacac----ggaaaccat B D Cat cacac----ggcaaccac B D Dog cacat----ggaaacca- B D Ferret cacat----ggaaaccac B D Panda cacat----ggaaaccat Pacific walrus cacat----ggaaaccat Weddell seal cacgt----ggaaaccat Black flying-fox tacat----ggaaaccag B D Megabat tacat----ggaaaccag Big brown bat tacag----ggagcccat David's myotis (bat) tacat----ggaaaccat D Little brown bat tacat----ggaaatctt B D Hedgehog cttgt-cccccaatatgt Star-nosed mole ctcgt----ggaaaatct B D Elephant cacat----agaaaccat Cape elephant shrew cacat----aggaacccg B D Manatee cacat----ggaaaccat Cape golden mole tgcat----ggaaatcat Aardvark cacat----gg-agctat D Chinese softshell turtle cagag----caaaactag B D Shrew ================== Zebra mbuna ================== Pundamilia nyererei ================== Burton's mouthbreeder ================== Princess of Burundi ================== B D Nile tilapia ================== D Peregrine falcon ================== D Saker falcon ================== Mexican tetra (cavefish) ================== Spotted gar ================== B D Coelacanth ================== B D Zebrafish ================== B D Budgerigar ================== D Rock pigeon ================== Southern platyfish ================== B D Medaka ================== D Mallard duck ================== B D Tetraodon ================== Yellowbelly pufferfish ================== B D Fugu ================== B D Chicken ================== B D Turkey ================== B D X. tropicalis ================== D Painted turtle ================== B D Atlantic cod ================== B D American alligator ================== B D Lizard ================== B D Stickleback ================== B D Guinea pig ================== B D Wallaby NNNNNNNNNNNNNNNNNN B D Tasmanian devil ================== B D Platypus ================== D Green seaturtle ================== B D Rabbit ================== B D Opossum ================== B D Tenrec ================== B D Armadillo ================== Inserts between block 23 and 24 in window D Chinese softshell turtle 3bp Alignment block 24 of 530 in window, 25160832 - 25160859, 28 bps B D Human tgtgctcc----------------------tccgatcc------------------atgctgct---gtt B D Chimp tgtgctcc----------------------tccgatcc------------------atgctgct---gtt B D Gorilla tgtgctcc----------------------tccgatcc------------------atgctgct---gtt B D Orangutan tgtgctcc----------------------tctgatcc------------------atgctgct---gtt B D Gibbon tgtgctcc----------------------tccgatcc------------------atgttgct---gtt B D Rhesus ggtgctcc----------------------tccgatcc------------------atgctgct---gtt B D Crab-eating macaque ggtgctcc----------------------tccgatcc------------------atgctgct---gtt B D Baboon ggtgctcc----------------------tccgatcc------------------atgctgct---gtt B D Green monkey agtgctcc----------------------tccgatcc------------------atgcagct---gtt B D Marmoset tgtgctcc----------------------tccaatcc------------------acgctgct---gtt B D Squirrel monkey tgtgctcc----------------------tccaatcc------------------acgctgct---gtt B D Bushbaby tatgttcc----------------------t---------------------------gctcaa---ata Chinese tree shrew --tgctcc----------------------ttcaatat------------------ctgcaatt---ctc B D Squirrel tatgtttc----------------------tct---------------------------tcca---gta Lesser Egyptian jerboa -------------------------------tt---------------------------tagg---gtc Prairie vole ------------------------------------------------------------tcgt---gtc B D Chinese hamster ------------------------------------------------------------tagt---gtc Golden hamster ------------------------------------------------------------tagt---gtc B D Mouse ------------------------------------------------------------tagt---gta B D Rat ------------------------------------------------------------cagt---gta B D Naked mole-rat t---ttcc----------------------cctccact------------------a-cacgct---gct Chinchilla tacgttcc----------------------cttccact------------------a-gac-ct---ggt Brush-tailed rat ttcgttcc----------------------cttccact------------------a-gatgct---aat B D Pig --tctctc---------------------cttcaatac------------------gtgcagct---ctt B D Alpaca gagctctc---------------------ctccaatgt------------------gtgctgct---ctt Bactrian camel gagctctc---------------------ctccaatgt------------------gtgctgct---ctt B D Dolphin tatcgctc---------------------cttcaatat------------------gtgttgct---ctt Killer whale tatcgctc---------------------cttcaatat------------------gtgttgct---ctt Tibetan antelope tatcgccc---------------------ctccaatat------------------gtgctgcc---ctt B D Cow tatcgccc---------------------ctccaatat------------------gtactgcc---ctt B D Sheep tatagccc---------------------ctccaatat------------------gtgctgcc---ctt Domestic goat tatcgccc---------------------ctccaatat------------------gtgctgcc---ctt B D Horse tatgtctc-------------------gcctccaatat------------------attttgct---ctt B D White rhinoceros tatgtctc-------------------tcctccgatat------------------cttttgct---ctt B D Cat tgtctctc------------------------caatat------------------atgctttt---ttt B D Dog -gtctctc--------------------caatcaatat------------------atgctgct---ctt B D Ferret tgtccctc--------------------cgatcagtat------------------atgctgtt---ctt B D Panda tgtctcgc--------------------caatcaatat------------------atgctgct----tt Pacific walrus tgtccctc--------------------caagcaacat------------------acgctgct---ctt Weddell seal tgtccctc--------------------caagcaacac------------------acgctgct---ctt Black flying-fox tatgtctc-------------------tcctccactat------------------atgctgct---ttt B D Megabat tatgcctc-------------------tcctccactat------------------atgctgcc---ttt Big brown bat tctgcctc-------------------tcctccactgt------------------gcgctcct---ctt David's myotis (bat) cccgcctc-------------------tcctccactgt------------------gcgctcct---ctt D Little brown bat cccgcctc-------------------tcctccactgt------------------gtgctcct---ctt B D Hedgehog tgctcgtgtgtgtgtgtgtgtgtgtgtgtttacagtacagctgttgacacatgggggtgcaatg---cct Star-nosed mole ctcttgca------------------------------------------------atgcagca---ctt B D Elephant cctgtcct-------------------tcctccaatgt------------------atgccgc----tct Cape elephant shrew tcagccct-------------------tcctccaatct------------------atgtcac----ctt B D Manatee tctatcgt-------------------tcctcccctat------------------atgctgct---ctt Cape golden mole tctgccca-------------------acgtacaatgt------------------atgttgct---ctt Aardvark tctgtcct-------------------tccttcaatat------------------aggccactctcttt D Green seaturtle ---------------------------tgcactcatca------------------aagcatct---ctt D Painted turtle ---------------------------tgcactcatca------------------aagcatct---ctt D Chinese softshell turtle ---------------------------tgcactcatca------------------aagcatct---ctt B D Shrew ====================================================================== Zebra mbuna ====================================================================== Pundamilia nyererei ====================================================================== Burton's mouthbreeder ====================================================================== Princess of Burundi ====================================================================== B D Nile tilapia ====================================================================== D Peregrine falcon ====================================================================== D Saker falcon ====================================================================== Mexican tetra (cavefish) ====================================================================== Spotted gar ====================================================================== B D Coelacanth ====================================================================== B D Zebrafish ====================================================================== B D Budgerigar ====================================================================== D Rock pigeon ====================================================================== Southern platyfish ====================================================================== B D Medaka ====================================================================== D Mallard duck ====================================================================== B D Tetraodon ====================================================================== Yellowbelly pufferfish ====================================================================== B D Fugu ====================================================================== B D Chicken ====================================================================== B D Turkey ====================================================================== B D X. tropicalis ====================================================================== B D Atlantic cod ====================================================================== B D American alligator ====================================================================== B D Lizard ====================================================================== B D Stickleback ====================================================================== B D Guinea pig ====================================================================== B D Wallaby NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN B D Tasmanian devil ====================================================================== B D Platypus ====================================================================== B D Rabbit ====================================================================== B D Opossum ====================================================================== B D Pika ---------------------------------------------------------------------- B D Tenrec ====================================================================== B D Armadillo ====================================================================== Human -a---- Chimp -a---- Gorilla -a---- Orangutan -g---- Gibbon -a---- Rhesus -a---- Crab-eating macaque -a---- Baboon -a---- Green monkey -a---- Marmoset -a---- Squirrel monkey -a---- Bushbaby -t---- Chinese tree shrew -c---- Squirrel -a---- Lesser Egyptian jerboa -c---- Prairie vole -a---- Chinese hamster -a---- Golden hamster -a---- Mouse -a---- Rat -a---- Naked mole-rat -c---- Chinchilla -c---- Brush-tailed rat -c---- Pig ta---- Alpaca ------ Bactrian camel ------ Dolphin ta---- Killer whale ta---- Tibetan antelope ta---- Cow ta---- Sheep ta---- Domestic goat ta---- Horse tg---- White rhinoceros ta---- Cat tt---- Dog gc---- Ferret tt---- Panda tt---- Pacific walrus tt---- Weddell seal tt---- Black flying-fox ta---- Megabat ta---- Big brown bat ta---- David's myotis (bat) ta---- Little brown bat ta---- Hedgehog cg---- Star-nosed mole cg---- Elephant -t---- Cape elephant shrew -t---- Manatee -t---- Cape golden mole -t---- Aardvark -t---- Green seaturtle tcctca Painted turtle tcctca Chinese softshell turtle tcctct Shrew ====== Zebra mbuna ====== Pundamilia nyererei ====== Burton's mouthbreeder ====== Princess of Burundi ====== Nile tilapia ====== Peregrine falcon ====== Saker falcon ====== Mexican tetra (cavefish) ====== Spotted gar ====== Coelacanth ====== Zebrafish ====== Budgerigar ====== Rock pigeon ====== Southern platyfish ====== Medaka ====== Mallard duck ====== Tetraodon ====== Yellowbelly pufferfish ====== Fugu ====== Chicken ====== Turkey ====== X. tropicalis ====== Atlantic cod ====== American alligator ====== Lizard ====== Stickleback ====== Guinea pig ====== Wallaby NNNNNN Tasmanian devil ====== Platypus ====== Rabbit ====== Opossum ====== Pika ------ Tenrec ====== Armadillo ====== Alignment block 25 of 530 in window, 25160860 - 25160867, 8 bps B D Human ttt-----------gacg-g--- B D Chimp ttt-----------gacg-g--- B D Gorilla ttt-----------gacg-g--- B D Orangutan ttt-----------gacg-g--- B D Gibbon ttt-----------gacg-g--- B D Rhesus ttt-----------gacg-g--- B D Crab-eating macaque ttt-----------gacg-g--- B D Baboon ttt-----------gacg-g--- B D Green monkey ttt-----------gacg-g--- B D Marmoset ttt-----------gatg-g--- B D Squirrel monkey ttt-----------gatg-g--- B D Bushbaby ttt-----------gatc-g--- Chinese tree shrew ctg-----------gatg-g--- B D Squirrel atg-----------ctga-t--- Lesser Egyptian jerboa tcg-----------agta-c--- Prairie vole ttg-----------gacg-g--- B D Chinese hamster ttg-----------gatg-g--- Golden hamster ctg-----------gatg-g--- B D Mouse ctg-----------gaca-g--- B D Rat ttg-----------gacg-g--- B D Naked mole-rat ttt-----------gatg-g--- Chinchilla ttc-----------gaca-g--- Brush-tailed rat tct-----------gatg-a--- B D Pika --g-----------cgtg-g--- B D Pig ttt-----------gatg-g--- B D Alpaca --t-----------gatg-g--- Bactrian camel --t-----------gatg-g--- B D Dolphin tct-----------gatg-g--- Killer whale tct-----------gatg-g--- Tibetan antelope ctt-----------gatg-g--- B D Cow ctt-----------gatg-g--- B D Sheep ctt-----------gatg-g--- Domestic goat ctt-----------gatg-g--- B D Horse tct-----------gact-c--- B D White rhinoceros tct-----------gatg-g--- B D Cat ttttttttttggtatatg-g--- B D Dog ttg-----------gatg-g--- B D Ferret ttt-----------gatg-g--- B D Panda ttt-----------gatg-g--- Pacific walrus ttt-----------gatg-g--- Weddell seal ttt-----------gatg-g--- Black flying-fox ttt-----------gatg-g--- B D Megabat ttt-----------gatg-g--- Big brown bat tct-----------gacg-g--- David's myotis (bat) ttt-----------cacg-g--- D Little brown bat ttt-----------gatg-g--- B D Hedgehog tct-------------------- Star-nosed mole cag-------------------- B D Elephant ttt-----------gatc-c--- Cape elephant shrew tac-----------gccc-a--- B D Manatee ttt-----------gatg-c--- Cape golden mole gcg-----------gatg-c--- Aardvark ttt-----------gatg-c--- B D Opossum ttt-----------gatgc---- B D Tasmanian devil ttt-----------gatg----- D Green seaturtle --------------tatg-taca D Painted turtle --------------tatg-taca D Chinese softshell turtle --------------tatg-taca B D Shrew ======================= Zebra mbuna ======================= Pundamilia nyererei ======================= Burton's mouthbreeder ======================= Princess of Burundi ======================= B D Nile tilapia ======================= D Peregrine falcon ======================= D Saker falcon ======================= Mexican tetra (cavefish) ======================= Spotted gar ======================= B D Coelacanth ======================= B D Zebrafish ======================= B D Budgerigar ======================= D Rock pigeon ======================= Southern platyfish ======================= B D Medaka ======================= D Mallard duck ======================= B D Tetraodon ======================= Yellowbelly pufferfish ======================= B D Fugu ======================= B D Chicken ======================= B D Turkey ======================= B D X. tropicalis ======================= B D Atlantic cod ======================= B D American alligator ======================= B D Lizard ======================= B D Stickleback ======================= B D Guinea pig ======================= B D Wallaby NNNNNNNNNNNNNNNNNNNNNNN B D Platypus ======================= B D Rabbit ======================= B D Tenrec ======================= B D Armadillo ======================= Inserts between block 25 and 26 in window David's myotis (bat) 271bp D Little brown bat 2bp B D Tasmanian devil 2bp Alignment block 26 of 530 in window, 25160868 - 25160872, 5 bps B D Human c---------------------------------------ta-cg B D Chimp c---------------------------------------ta-cg B D Gorilla c---------------------------------------ta-cg B D Orangutan c---------------------------------------ta-cg B D Gibbon c---------------------------------------ta-cg B D Rhesus c---------------------------------------ta-cg B D Crab-eating macaque c---------------------------------------ta-cg B D Baboon c---------------------------------------ta-cg B D Green monkey c---------------------------------------ta-cg B D Marmoset c---------------------------------------tg-tg B D Squirrel monkey c---------------------------------------ta-tg B D Bushbaby c---------------------------------------ta-tg Chinese tree shrew c---------------------------------------tg-tg B D Squirrel c---------------------------------------tt-tg Lesser Egyptian jerboa a---------------------------------------tgctg Prairie vole c---------------------------------------tg-tg B D Chinese hamster c---------------------------------------tg-tg Golden hamster c---------------------------------------tg-tg B D Mouse t---------------------------------------tg-tg B D Rat t---------------------------------------tg-tg B D Naked mole-rat c---------------------------------------tg-cg Chinchilla c---------------------------------------tg-tg Brush-tailed rat c---------------------------------------tg-tg B D Pika c---------------------------------------ca-cg B D Pig a---------------------------------------ta-tg B D Alpaca t---------------------------------------ta-tg Bactrian camel a---------------------------------------ta-tg B D Dolphin a---------------------------------------ta-tg Killer whale a---------------------------------------ta-tg Tibetan antelope a---------------------------------------aa-tg B D Cow a---------------------------------------aa-tg B D Sheep a---------------------------------------aa-tg Domestic goat a---------------------------------------aa-tg B D Horse a---------------------------------------ta-ta B D White rhinoceros a---------------------------------------ta-tg B D Cat at--------------------------------------ta-tg B D Dog a---------------------------------------tg-cg B D Ferret g---------------------------------------ta-tg B D Panda a---------------------------------------tt-tg Pacific walrus a---------------------------------------ta-cg Weddell seal a---------------------------------------ca-tg Black flying-fox a---------------------------------------ta-tg B D Megabat a---------------------------------------ta-tg Big brown bat a---------------------------------------tg-cg D Little brown bat a---------------------------------------tg-tg B D Hedgehog -caccatgacaggcgtctgtctgtctgtctttggggtgtgca-tg Star-nosed mole -c--------------------------------------ta-gg B D Elephant a---------------------------------------ca-tg Cape elephant shrew t---------------------------------------ta--- B D Manatee a---------------------------------------ta-tg Cape golden mole a---------------------------------------tg-ta Aardvark a---------------------------------------tg-tg B D Opossum -------------------------------------------ag D Green seaturtle ---------------------------------------gta-cg D Painted turtle ---------------------------------------gta-cg D Chinese softshell turtle ---------------------------------------gga-cg B D Shrew ============================================= Zebra mbuna ============================================= Pundamilia nyererei ============================================= Burton's mouthbreeder ============================================= Princess of Burundi ============================================= B D Nile tilapia ============================================= D Peregrine falcon ============================================= D Saker falcon ============================================= Mexican tetra (cavefish) ============================================= Spotted gar ============================================= B D Coelacanth ============================================= B D Zebrafish ============================================= B D Budgerigar ============================================= D Rock pigeon ============================================= Southern platyfish ============================================= B D Medaka ============================================= D Mallard duck ============================================= B D Tetraodon ============================================= Yellowbelly pufferfish ============================================= B D Fugu ============================================= B D Chicken ============================================= B D Turkey ============================================= B D X. tropicalis ============================================= B D Atlantic cod ============================================= B D American alligator ============================================= B D Lizard ============================================= B D Stickleback ============================================= B D Guinea pig ============================================= B D Wallaby NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN B D Tasmanian devil ============================================= B D Platypus ============================================= David's myotis (bat) ============================================= B D Rabbit ============================================= B D Tenrec ============================================= B D Armadillo ============================================= Inserts between block 26 and 27 in window D Little brown bat 38bp B D Opossum 3bp Alignment block 27 of 530 in window, 25160873 - 25160877, 5 bps B D Human --ta-tt-------------------------------t B D Chimp --ta-tt-------------------------------t B D Gorilla --ta-tt-------------------------------t B D Orangutan --ta-tt-------------------------------t B D Gibbon --ta-tt-------------------------------t B D Rhesus --ta-tt-------------------------------t B D Crab-eating macaque --ta-tt-------------------------------t B D Baboon --ta-tt-------------------------------t B D Green monkey --ta-tt-------------------------------t B D Marmoset -----tt-------------------------------t B D Squirrel monkey --tgctt-------------------------------t B D Bushbaby --ta-tt-------------------------------t Chinese tree shrew --ta-tt-------------------------------t B D Squirrel --ta-tt-------------------------------t Lesser Egyptian jerboa --cc-ct-------------------------------t Prairie vole --tg-tt-------------------------------t B D Chinese hamster --tg-tt-------------------------------t Golden hamster --tg-tt-------------------------------t B D Mouse -----tt-------------------------------t B D Rat --ta-tt-------------------------------t B D Naked mole-rat --ta-tt-------------------------------t Chinchilla --ta-tt-------------------------------t Brush-tailed rat --ta-ttttatttatttatttatttatttatttatttat B D Pika --tg-gc-------------------------------t B D Pig --ta-ct-------------------------------t B D Alpaca --tt-tt-------------------------------t Bactrian camel --tt-tt-------------------------------t B D Dolphin --ca-tt-------------------------------t Killer whale --ca-tt-------------------------------t Tibetan antelope --cg-tt-------------------------------t B D Cow --cg-tt-------------------------------t B D Sheep --ca-tt-------------------------------t Domestic goat --cg-tt-------------------------------t B D Horse --ta-tt-------------------------------t B D White rhinoceros --ta-tt-------------------------------t B D Cat --ta-tt-------------------------------t B D Dog --ga-tt-------------------------------t B D Ferret --ta-tt-------------------------------t B D Panda --ta-tt-------------------------------t Pacific walrus --ta-tt-------------------------------t Weddell seal --ta-tt-------------------------------t Black flying-fox --ta-tt-------------------------------t B D Megabat --ta-tt-------------------------------t Big brown bat --tg-tt-------------------------------c D Little brown bat --tg-tt-------------------------------t B D Hedgehog --ca-ct-------------------------------t Star-nosed mole --ta-tt-------------------------------g B D Elephant --ta-tt-------------------------------t B D Manatee --ta-tt-------------------------------t Cape golden mole --ta-tt-------------------------------t Aardvark --ta-tt-------------------------------t B D Armadillo --ta-tt-------------------------------t B D Opossum --ca-tt-------------------------------a B D Tasmanian devil --ta-tt-------------------------------t D Green seaturtle gatg-t--------------------------------- D Painted turtle gatg-t--------------------------------- D Chinese softshell turtle gatg-t--------------------------------- B D Shrew ======================================= Zebra mbuna ======================================= Pundamilia nyererei ======================================= Burton's mouthbreeder ======================================= Princess of Burundi ======================================= B D Nile tilapia ======================================= D Peregrine falcon ======================================= D Saker falcon ======================================= Mexican tetra (cavefish) ======================================= Spotted gar ======================================= B D Coelacanth ======================================= B D Zebrafish ======================================= B D Budgerigar ======================================= D Rock pigeon ======================================= Southern platyfish ======================================= B D Medaka ======================================= D Mallard duck ======================================= B D Tetraodon ======================================= Yellowbelly pufferfish ======================================= B D Fugu ======================================= B D Chicken ======================================= B D Turkey ======================================= B D X. tropicalis ======================================= B D Atlantic cod ======================================= B D American alligator ======================================= B D Lizard ======================================= B D Stickleback ======================================= B D Guinea pig ======================================= Cape elephant shrew --------------------------------------- B D Wallaby NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN B D Platypus ======================================= David's myotis (bat) ======================================= B D Rabbit ======================================= B D Tenrec ======================================= Inserts between block 27 and 28 in window D Little brown bat 226bp B D Opossum 1bp B D Tasmanian devil 1bp D Green seaturtle 11bp D Painted turtle 11bp D Chinese softshell turtle 15bp Alignment block 28 of 530 in window, 25160878 - 25160881, 4 bps B D Human -ttac B D Chimp -ttac B D Gorilla -ttac B D Orangutan -ttat B D Gibbon -ttat B D Rhesus -ttat B D Crab-eating macaque -ttat B D Baboon -ttat B D Green monkey -ttat B D Marmoset -ttat B D Squirrel monkey -ttat B D Bushbaby -ttaa Chinese tree shrew -ttat B D Squirrel -tagt Lesser Egyptian jerboa -tgat Prairie vole -tgac B D Chinese hamster -tgac Golden hamster -tgac B D Mouse -tgac B D Rat -tgac B D Naked mole-rat -gcat Chinchilla -gcat Brush-tailed rat -ttat B D Pika -tc-- B D Pig -gtat B D Alpaca -ctat Bactrian camel -ctat B D Dolphin -ttat Killer whale -ttat Tibetan antelope -tta- B D Cow -tta- B D Sheep -tta- Domestic goat -tta- B D Horse -taac B D White rhinoceros -ttac B D Cat -ttat B D Dog -tt-- B D Ferret -ttat B D Panda -ttat Pacific walrus -ttat Weddell seal -ttat Black flying-fox -ttag B D Megabat -ttag Big brown bat -ttat D Little brown bat -ttat B D Hedgehog -ttat Star-nosed mole -ctac B D Elephant -ttat B D Manatee -ttat Cape golden mole -ttat Aardvark -ttat B D Armadillo -tatt B D Opossum -caa- B D Tasmanian devil -caa- D Green seaturtle tgga- D Painted turtle tgga- D Chinese softshell turtle ttga- D Spiny softshell turtle ttga- B D Shrew ===== Zebra mbuna ===== Pundamilia nyererei ===== Burton's mouthbreeder ===== Princess of Burundi ===== B D Nile tilapia ===== D Peregrine falcon ===== D Saker falcon ===== Mexican tetra (cavefish) ===== Spotted gar ===== B D Coelacanth ===== B D Zebrafish ===== B D Budgerigar ===== D Rock pigeon ===== Southern platyfish ===== B D Medaka ===== D Mallard duck ===== B D Tetraodon ===== Yellowbelly pufferfish ===== B D Fugu ===== B D Chicken ===== B D Turkey ===== B D X. tropicalis ===== B D Atlantic cod ===== B D American alligator ===== B D Lizard ===== B D Stickleback ===== B D Guinea pig ===== Cape elephant shrew ----- B D Wallaby NNNNN B D Platypus ===== David's myotis (bat) ===== B D Rabbit ===== B D Tenrec ===== Inserts between block 28 and 29 in window Lesser Egyptian jerboa 5bp B D Opossum 4bp B D Tasmanian devil 4bp Alignment block 29 of 530 in window, 25160882 - 25160889, 8 bps B D Human tt--tattca B D Chimp tt--tattca B D Gorilla tt--tattca B D Orangutan tt--tattca B D Gibbon tt--tattca B D Rhesus tt--cattca B D Crab-eating macaque tt--cattca B D Baboon tt--cattca B D Green monkey tt--cattca B D Marmoset tt--tatt-- B D Squirrel monkey tt--tatt-- B D Bushbaby tt--tatt-- Chinese tree shrew tt--cactca B D Squirrel tt--tattca Lesser Egyptian jerboa tg--ttttta Prairie vole tt--tattca B D Chinese hamster tt--tattca Golden hamster tt--cattcg B D Mouse tt--tattta B D Rat tt--tattca B D Naked mole-rat tt--tgttcg Chinchilla tt--cgttcg Brush-tailed rat tt--attta- B D Pig tt--tattca B D Alpaca tt--tattaa Bactrian camel tt--tattca B D Dolphin tt--tactcg Killer whale tt--tattcg Tibetan antelope -----attca B D Cow -----attca B D Sheep -----attca Domestic goat -----attca B D Horse tg--tattca B D White rhinoceros tt--tatgca B D Cat tt--cattca B D Dog ----tattca B D Ferret tt--tattca B D Panda t-----ttca Pacific walrus tt--tattca Weddell seal tt--tattca Black flying-fox tt--tattca B D Megabat tt--tattca Big brown bat gt--cattca David's myotis (bat) tt--cattca D Little brown bat tt--cattca B D Hedgehog -------tct Star-nosed mole -------tcc B D Elephant tt--tattca Cape elephant shrew ct--tatttg B D Manatee tt--tattca Aardvark tt--cattca