Annotation (anno|CP040529.1|CDS|QMW84567.1)
 
Item: anno|CP040529.1|CDS|QMW84567.1
Score: 0
Position: CP040529.1:1218-2726
Genomic Size: 1509
Strand: +
View DNA for this feature (bact/Bacteroides thetaiotaomicron)

Experiment count1
Comma separated list of experiment ids. Always 0,1,2,3....1
Data schema/format description and download

Go to Annotation track controls

Description

This track shows the annotation.

The Id of each track can be interpreted by splitting the string on each pipe symbol "|". The fields are:

  1. Annotation type
  2. Conitg/ Plasmid Id
  3. Feature type
  4. Annotation Id

Annotation Details

Annotation Provider NCBI
Annotation Date 05/21/2019 13:44:40
Annotation Pipeline NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision 4.8
Features Annotated Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total) 5,027
CDSs (total) 4,940
Genes (coding) 4,845
CDSs (with protein) 4,845
Genes (RNA) 87
rRNAs 5, 5, 5 (5S, 16S, 23S)
complete rRNAs 5, 5, 5 (5S, 16S, 23S)
tRNAs 70
ncRNAs 2
Pseudo Genes (total) 95
CDSs (without protein) 95
Pseudo Genes (ambiguous residues) 0 of 95
Pseudo Genes (frameshifted) 38 of 95
Pseudo Genes (incomplete) 48 of 95
Pseudo Genes (internal stop) 31 of 95
Pseudo Genes (multiple problems) 20 of 95

Display Conventions and Configuration

The colours of the annotation corresponds with the reading frame of the gene:

  •  Red  + strand 1 frame
  •  Blue  + strand 2 frame
  •  Green  + strand 3 frame
  •  Purple  - strand 4 frame
  •  Orange  - strand 5 frame
  •  Turquoise  - strand 6 frame

Credits

Data were processed at the Bioinformatic Institute of Leipzig. For inquiries, please contact us at the following address: john (at) bioinf.uni-leipzig.de

References

IDs

BioProject PRJNA543750
BioSample SAMN11776005