Multiz Alignments of 35 Vertebrates

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Capitalize exons based on show bases

Place cursor over species for alignment detail. Click on 'B' to link to browser for aligned species, click on 'D' to get DNA for aligned species.
Alignment block 1 of 340 in window, 56737571 - 56737597, 27 bps B D Mouse cagcttc---------ct-------cgccatcat-----acattcact B D Rat cagcgtc---------ct-------caccatcat-----acaatcact GCF_003668045 ctgcgtc---------ct-------cgccaccgct---gtaaatcctt B D Squirrel ccgcaac---------ct-------tt--------------------- B D Guinea pig tcactgg---------ct------------------------------ B D Pika ctgcacc---------cc-------ggtcggcgc-----acggctct- B D Human ctgcgtc---------ct-------cctcacgaagctgcgcaacttct B D Chimp ctgcgtc---------ct-------cctcaacaagctgcgcaacttct B D Bonobo ctgcgtc---------ct-------cctcaacaagctgcgcaacttct B D Gorilla ctgcgtc---------ct-------cctcaccaagctgcgcaacttct B D Rhesus ctgcgtc---------ct-------cctcaccaagctgcgcaacttct B D Marmoset ctgcgtc---------ct-------tctcacaaagctgcgcaacttct B D Tarsier ctgcgtc---------ct-------cgtcac------------ctccc B D Bushbaby ctgtggc---------ctgtgtccacatccccgagcagcgcaacat-t B D Malayan flying lemur ctgtgtc---------ct-------cgtcaccgcgccac-caatttct B D Pig caggggt----------------------------------------- B D Dolphin cagtgtcctcc----tct-------cgtcacctagctatgtgccttcc B D Cow cagtgtc---------ct-------tgtcaccgagctctgtggcttct B D Sheep cagtgtc---------ct-------tgtcacggagctctgtggcttct B D Horse cggtgtccact----cgt-------caccgctcagccgcgcggcttct B D Chinese pangolin cggtgtcctcc----tct-------cgtcaccgagcagtgcggcttct B D Dog tgctg---tcc----tct-------catcatggagcggtgtggcttcc B D Hawaiian monk seal cggtgtcctcc----tct-------cctcaccgagcggtgtggcttct B D Shrew cgacgtccttcccgttcc-------cgtcgcggagccgtgcagctgct B D Tenrec ================================================ B D Hedgehog ================================================ B D Zebrafish ================================================ B D X. tropicalis ================================================ B D Opossum ================================================ B D Chicken ================================================ B D Elephant ================================================ B D Rabbit ================================================ Beaver ================================================ Alignment block 2 of 340 in window, 56737598 - 56737609, 12 bps B D Mouse actaaaattgca B D Rat actaaaattgca GCF_003668045 actagaagtgta Beaver actaacgctgca B D Squirrel actgaaactg-- B D Guinea pig gtggaagctgca B D Pika gccaaagccgcg B D Human gctaatgctgca B D Chimp gctaatgctgca B D Bonobo gctaatgctgca B D Gorilla gctaatgctgca B D Rhesus gctaatgctgcc B D Marmoset gctaatgctgca B D Tarsier actaatgttgca B D Bushbaby acgaatgccgca B D Malayan flying lemur actgatgcttca B D Pig ------gtttcg B D Dolphin acaaatgcttcg B D Cow acagatgcttcg B D Sheep acagatgcttcg B D Horse acagatgcttga B D Chinese pangolin acagatgcttg- B D Dog aaagatgcttag B D Hawaiian monk seal acagatgcttag B D Shrew aaggaggcttca B D Tenrec ============ B D Hedgehog ============ B D Zebrafish ============ B D X. tropicalis ============ B D Opossum ============ B D Chicken ============ B D Elephant ============ B D Rabbit ============ Alignment block 3 of 340 in window, 56737610 - 56737610, 1 bps B D Mouse a- B D Rat a- GCF_003668045 a- Beaver a- B D Guinea pig g- B D Rabbit a- B D Pika a- B D Human a- B D Chimp a- B D Bonobo a- B D Gorilla a- B D Rhesus a- B D Marmoset a- B D Tarsier g- B D Bushbaby t- B D Malayan flying lemur ac B D Pig a- B D Dolphin a- B D Cow a- B D Sheep a- B D Horse a- B D Chinese pangolin a- B D Dog a- B D Hawaiian monk seal a- B D Shrew a- B D Tenrec == B D Hedgehog == B D Zebrafish == B D X. tropicalis == B D Opossum == B D Chicken == B D Elephant == B D Squirrel -- Alignment block 4 of 340 in window, 56737611 - 56737649, 39 bps B D Mouse ccctggcaaaagcgagg-tc-tcctctggacaat--tacaggg--- B D Rat ccctggcaaaagccagg-tc-ccctctctactgt--tacaggg--- GCF_003668045 ccgtgtc-acagcgagg-tc-cccttctgacagc--tacaggg--- Beaver ccctggc-----------------------------tagaagg--- B D Squirrel -------aaaggcgaag-tc-ttctttcgctagc--taaaggc--- B D Guinea pig ccctggggag------------------------------------ B D Rabbit cccgggcgaggccaagt-cc-tccgcccgcggactggagaggg--- B D Pika ctccggcggggccgagt-cc-tcctcgggcggcc--gcgaggg--- B D Human ccctggcaagacgaaat-cc-ccctccctctggc--taga------ B D Chimp ccctggcaagacgaaat-cc-ccctccctctggc--taga------ B D Bonobo ccctggcaagacgaaat-cc-ccctccctctggc--taga------ B D Gorilla ccctggcaaga-gaaat-cc-ccctccctctggc--taga------ B D Rhesus ccctggcaagacgaaat-cc-ccctccctctggc--taga------ B D Marmoset ccctggcaagacgaaat-cc-tcttccttctgac--tagaagg--- B D Tarsier cccgggcaagacgccgt-cc-tcctcccgctggc--tagaagg--- B D Bushbaby ctctggcaaagctaagc-gt-cccttcttctggc--tagaggg--- B D Malayan flying lemur ccctggcaagatgaagtccc-ccctccctctggc--tagacag--- B D Pig accaagcaggtcgaagt-ccgccctcccttctga--tggaggc--- B D Dolphin actgggcaggtcgaagt-cccccctccctttggc--tggacgc--- B D Cow accaggcaggtcgaag------cgtcccttgggc--aggacgc--- B D Sheep accaggcaggtcgaag------cgtcccttgggc--aggacgc--- B D Horse cccaggcagagcgaagt-cctccctcccgcgggc--ttgaggc--- B D Chinese pangolin cccag-------gaagt-cc-ccgtttctctggc--tagaaac--- B D Dog cccagacagggcgaagt-gcctcctccctctgac--tggaggc--- B D Hawaiian monk seal cccaggcaaggcgaagt-gcctcctccctctgac--tggaggc--- B D Shrew tgcaggcaggccgaaat-ac-tcctcctggtggc--aggaggc--- B D Tenrec cccaggc-----gaaag-cc-ccctccttctggc--gacggttggg B D Hedgehog ============================================== B D Zebrafish ============================================== B D X. tropicalis ============================================== B D Opossum ============================================== B D Chicken ============================================== B D Elephant ============================================== Alignment block 5 of 340 in window, 56737650 - 56737778, 129 bps B D Mouse tcaacggggccttcc----ccgacccccaa-actcc-------------------tcc--ta------gt B D Rat tcagcctggccttcc----ctcacccccaagactcc-------------------tcc--ca------gt GCF_003668045 tcagcctgccct------------ctgcac-actat-------------------tcc--ca-------- Beaver ccagcctggccttcc---------ctcaga-atgcc-------------------tct--ct------gc B D Squirrel tcagccaggcttccc---------ctcaga-acccc-------------------ttc--ct------gt B D Guinea pig ------------------------ccgggg-tctcc-------------------tcc--c-------gt B D Rabbit tcagcccggcctccc---------ctcggg-gcccc-------------------gcc--ctgtcgctgc B D Pika tcagcccggactccc---------ctcgag-gcccc-------------------tcc--c-------gc B D Human tcagcccagcctccc---------ctcagg-gaccttcctgcccctccctacccctcc--ct------ac B D Chimp tcagcccagtctccc---------ctcagg-gacct---------tccctgcccctcc--ct------ac B D Bonobo tcagcccagtctccc---------ctcagg-gacct---------tccctgcccctcc--ct------ac B D Gorilla tcagcccagcctccc---------ctcagg-gacct---------tccctgcccctcc--ct------ac B D Rhesus tcagctcagcctccc---------ctcagg-gaccc-------------------tcc--ct------gc B D Marmoset tcagcctagcctccc---------ctcagg-gaccc-------------------tcc--ct------gc B D Tarsier tcggcccggcctccc---------cgcagg-gcccc-------------------tcc--ct------gc B D Bushbaby tcagcccagcctccc---------cacagg-gaccc-------------------ctc--ct------gc B D Malayan flying lemur tcaggctggccttcc---------ctcagg-gtccc-------------------tcc--ct------gt B D Pig tcagcccagcgtccc---------tgcagg-ggtcc-------------------tca--ct------gc B D Dolphin tcagcctggcgtccc---------tgcagg-gctcc-------------------tcc--ct------gc B D Cow tcagcccggcgtctc---------tgctgg-actcc-------------------gcc--ct------gc B D Sheep tcagcccggcgtctc---------tgctgg-actcc-------------------gcc--ct------gc B D Horse tcggcctggcctccc---------cgtagg-gatct-------------------tcc--cg------gc B D Chinese pangolin tcagccgagccttct---------cgccgc-gatcc-------------------ttg--ct------gg B D Dog tcaggctggcctccc---------agaagg-gatct-------------------tcc--ct------gc B D Hawaiian monk seal tcagcccggcctccc---------cgaagg-gatct-------------------tcc--ct------gc B D Shrew tcagccttgcctttg---------cgatag-gaccc-------------------tccctct------gc B D Elephant tcaaagcgaaatccc-----ccttcttctg-gcccc-------------------tcc--ct------ac B D Tenrec ----gccgacctcccggcagccgcc--ccg-gcccc-------------------tcc--c--------c B D Hedgehog ====================================================================== B D Zebrafish ====================================================================== B D X. tropicalis ====================================================================== B D Opossum ====================================================================== B D Chicken ====================================================================== Mouse cgc---------------c-----------------ttctctca------gtagagacctgattcatgct Rat cgc---------------t-----------------atcccaca------gtagagacttgattcatgc- GCF_003668045 -------------------------------------tccctta------ggagagacctgattcatgat Beaver ctc---------------t----g------------tcccccca------gtcgggatctgatccttcct Squirrel ctc---------------t-----------------tatcccca------gtcgggatgtgatccttgct Guinea pig ttc---------------t-----------------gtcccaca------gccagaatctgattcttgc- Rabbit ccc---------------t----c-------ccccctccccccagcccttggcggtatccgatcctcgca Pika ccc---------------t----g-------gctcctgcccccgcccgttggcagg---cgagcctggcg Human ccc---------------t----aggccgctccccccttcctct------gttgggatccgatccttgtt Chimp ccc---------------t----aggccgctccccccttcctct------gttgggatccgatccttgtt Bonobo ccc---------------t----aggccgctccccccttcctct------gttgggatccgatccttgtt Gorilla ccc---------------t----aggccgctccccgcttcctct------gttgggatccgatccttgtt Rhesus ccc---------------t----aggccgctccccccttcctct------gttgggatccgatccttgtt Marmoset ccc---------------t----gggccgctggccccttcctct------tttg------gatccttgtt Tarsier ctt---------------t----a------cccccggtgtccca------gttgggatccga-cctggcg Bushbaby c--------------------------------------cacca------gttgg-----catctttgct Malayan flying lemur ccc---------------t----g-------------cccccca------atcgggatccgatcctggct Pig ccc-atcctccctgccc-c------------------ggcccca------gcaggatt--gatccttgat Dolphin ccgggtcctccctgcccct------------------gccccca------gccgggatccgatccttgat Cow tct---------------t------------------gccccta------gccgggatccgatccttgat Sheep tcg---------------t------------------gccccta------gcggggatccgatccttgat Horse ccc---------------t------------------gccccca------gcctggatccgaccctcgat Chinese pangolin ccc---------------t------------------accccga------gccgagatccagtctttaat Dog ccc---------------tgccccggccccggccccggccccca------accgggatcc-atccttgat Hawaiian monk seal ccc---------------t------------------gccccca------accgggaccc-gtccttgat Shrew ccc---------------t------------------gccccca------gctggcattcgaccctctat Elephant ccc---------------t------------------gctccca------gccgggatccgatccttgct Tenrec tcc---------------g------------------cccctct------gccgggatccgatcctcgct Hedgehog ====================================================================== Zebrafish ====================================================================== X. tropicalis ====================================================================== Opossum ====================================================================== Chicken ====================================================================== Mouse cgcaat-----------tgctgt---ccc-tcagccag------gagtattg--ct-ccttgaac-aaaa Rat ---att-----------tgctgt---cccctcagccac------gggt-tta--ct-ccttgaac-taaa GCF_003668045 tgcact-----------tgatgt---cac-tcagccac------gagttttg--at-ccttgaat-aaaa Beaver cgcact-----------tgctgt---tcc-gcagtcac------gagttttg--cc-ccttgcacaaaaa Squirrel ctcaca-----------tgccat---ctt-gcaagca--------agttttg--cc-ccttgcac-aaaa Guinea pig ---act-----------tatcgt---ttc-gaaggcac------gagttttg--cc-cctcgcac-aaaa Rabbit cgcgct-----------tggact---cccggcagccgc------ggactgtg--cc-cctcgcgc-agta Pika cgcact-----------t---------------gccgt------ccagcgag--ct-cc-----c-agaa Human cgctct-----------tgcaat---ccc-gcagcccg------gagttttg--cc-ccgtgcat-taaa Chimp cgctct-----------tgcaat---ccc-gcagcccg------gagttttg--cc-ccgtgcat-taaa Bonobo cgctct-----------tgcaat---ccc-gcagcccg------gagttttg--cc-ccgtgcat-taaa Gorilla cgctct-----------tgcaat---ccc-gcagcccg------gagttttg--cc-ccgtgcat-taaa Rhesus cgctct-----------tgcaat---ccc-gcagccca------gagttttg--cc-ccctgcat-aaaa Marmoset tgctgt-----------tgcaat---ccc-gcagccca------gagttttg--cc-ccctccat-aaaa Tarsier tgcttt-----------tgccgccgaccc-gcagccac------gagttgtg--cc-cctcgcgc-aaaa Bushbaby tactct-----------ggccgt---gct-gctccttgccccacgactttcc--cc-ccttgcac-aaaa Malayan flying lemur cacatt-----------tgccat---ccc-gcagccgt------gagtttt---cc-ccttgcac-aaaa Pig tccact-----------tg---t---tct-gaagccaa------gacttttg--cc-ccttgccctaaaa Dolphin cgcact-----------tgccgt---tct-gcagccta------gagttttg--cc-ccttgcccccaaa Cow cgcact-----------tgccac---tat-gcagccaa------gagttttg--cc-ccttgccccccaa Sheep cgcact-----------tgccac---tat-gcagccaa------gagttttg--cc-ccttgccccccaa Horse tgcact-----------tgccat---ccc-taagccac------gagtt----------ttgcac-agaa Chinese pangolin catact-----------tgtcgc---acc-acagccat------aagttttt--cc-ccttgcaa-aaaa Dog cgcact-----------tgccgg---acc-gcagccac------aggttttg--cc-ctttgcat-aaaa Hawaiian monk seal tgcact-----------tgccgg---gcg-gcagccac------aagttttg--ac-ccttgcacaaaaa Shrew cgtatt-----------tgctgt---ccc-gctgccta------gggtttttgccc-cctcgcac-aaaa Elephant ctcactctct-------agcagc---cag-gcagctag------gagctttg--cctccttgcac-aaaa Tenrec cgcgctagctcacagtcggccgc---ccg-ccagctag------gagctttg--ccccctcccgc-aaaa Hedgehog ====================================================================== Zebrafish ====================================================================== X. tropicalis ====================================================================== Opossum ====================================================================== Chicken ====================================================================== Mouse atacattctcattc Rat at------------ GCF_003668045 atgcgttc------ Beaver atatgttc------ Squirrel atatgttctctttc Guinea pig gtatgttttctttc Rabbit ccgcgttcgctttc Pika acgagttcacttcc Human acatgttctctttc Chimp acatgttctctttc Bonobo acatgttctctttc Gorilla acatgttctctttc Rhesus atatgttctctttc Marmoset atgtgttctctttc Tarsier atgtgttctctttc Bushbaby acgagttctctttc Malayan flying lemur atgtgttctttttc Pig atatattctctttc Dolphin atgtggtcgctttc Cow atgtgttatctttc Sheep atgtgttctctttc Horse atgtgttctctttc Chinese pangolin atgtgttctctttc Dog atgtgttctctttc Hawaiian monk seal atgtgttctctttc Shrew atgtgttctctttc Elephant atgtgttctctttc Tenrec atgtgctctctttc Hedgehog ============== Zebrafish ============== X. tropicalis ============== Opossum ============== Chicken ============== Inserts between block 5 and 6 in window B D Squirrel 17bp B D Pika 13bp B D Bushbaby 12bp B D Malayan flying lemur 12bp B D Chinese pangolin 12bp B D Dog 12bp Alignment block 6 of 340 in window, 56737779 - 56737839, 61 bps B D Mouse tctctctatctctgtctctctctctgtctgtctctgtctctgtctctgtctctgtctgtct---- B D Rat ----------------------------------------------------------tct---- GCF_003668045 ----------------------------------------------------------cct---- Beaver ----------------------------------------------------------cct---- B D Pig ---------------------------------------------------------attt---- B D Dolphin ---------------------------------------------------------attt---- B D Cow ---------------------------------------------------------attt---- B D Sheep ---------------------------------------------------------attt---- B D Horse ---------------------------------------------------------attt---- B D Hawaiian monk seal ---------------------------------------------------------attt---- B D Shrew ---------------------------------------------------------attt---- B D Elephant ---------------------------------------------------------atttgcag B D Tenrec ---------------------------------------------------------atttgcgg B D Guinea pig ----------------------------------------------------------------- B D Rhesus ----------------------------------------------------------------- B D Dog ================================================================= B D Marmoset ----------------------------------------------------------------- B D Gorilla ----------------------------------------------------------------- B D Bonobo ----------------------------------------------------------------- B D Chimp ----------------------------------------------------------------- B D Human ----------------------------------------------------------------- B D Tarsier ----------------------------------------------------------------- B D Hedgehog ================================================================= B D Pika ================================================================= B D Zebrafish ================================================================= B D X. tropicalis ================================================================= B D Opossum ================================================================= B D Chicken ================================================================= B D Squirrel ================================================================= B D Rabbit ----------------------------------------------------------------- B D Chinese pangolin ================================================================= B D Bushbaby ================================================================= B D Malayan flying lemur ================================================================= Inserts between block 6 and 7 in window B D Pig 10bp B D Dolphin 8bp B D Cow 8bp B D Sheep 8bp B D Horse 8bp B D Hawaiian monk seal 8bp B D Shrew 4bp Alignment block 7 of 340 in window, 56737840 - 56737849, 10 bps B D Mouse ctctct------ctct B D Rat ttcttttga-ggctct GCF_003668045 ttcgtttga-ggcttt Beaver ttcatttgc-ggattt B D Guinea pig ---atctgc-gcattt B D Rabbit ---attcgcagggttt B D Human ---atttgc-agattt B D Chimp ---atttgc-agattt B D Bonobo ---atttgc-agattt B D Gorilla ---atttgc-agattt B D Rhesus ---atttgc-ggattt B D Marmoset ---atttgt-ggattt B D Tarsier ---atttgc-ggattt B D Hedgehog ttcatttgc-ggactt B D Shrew ------------attt B D Elephant ------------attt B D Tenrec ------------attt B D Sheep ================ B D Hawaiian monk seal ================ B D Dog ================ B D Horse ================ B D Pika ================ B D Zebrafish ================ B D X. tropicalis ================ B D Cow ================ B D Opossum ================ B D Chicken ================ B D Squirrel ================ B D Pig ================ B D Chinese pangolin ================ B D Dolphin ================ B D Bushbaby ================ B D Malayan flying lemur ================ Alignment block 8 of 340 in window, 56737850 - 56737850, 1 bps B D Mouse a B D Rat a GCF_003668045 a Beaver a B D Guinea pig a B D Rabbit a B D Human a B D Chimp a B D Bonobo a B D Gorilla a B D Rhesus a B D Marmoset a B D Tarsier a B D Bushbaby a B D Malayan flying lemur a B D Pig a B D Dolphin a B D Cow a B D Sheep a B D Horse a B D Chinese pangolin a B D Dog a B D Hawaiian monk seal a B D Hedgehog a B D Shrew a B D Elephant a B D Tenrec c B D Pika = B D Zebrafish = B D X. tropicalis = B D Opossum = B D Chicken = B D Squirrel = Alignment block 9 of 340 in window, 56737851 - 56737852, 2 bps B D Mouse at B D Rat at GCF_003668045 at Beaver at B D Guinea pig at B D Rabbit at B D Pika at B D Human at B D Chimp at B D Bonobo at B D Gorilla at B D Rhesus at B D Marmoset at B D Tarsier at B D Bushbaby at B D Malayan flying lemur at B D Pig at B D Dolphin at B D Cow at B D Sheep at B D Horse at B D Chinese pangolin at B D Dog at B D Hawaiian monk seal at B D Hedgehog gt B D Shrew at B D Elephant at B D Tenrec at B D Zebrafish == B D X. tropicalis == B D Opossum == B D Chicken == B D Squirrel == Alignment block 10 of 340 in window, 56737853 - 56737913, 61 bps B D Mouse aaacaaacgcaatcataccata-g-gaggctcaaagccatccttctaaaagcaattccactgt B D Rat aaacaaacgcaatcgtaccaca-g-gaggctaaaagccgttcttctgaaagcgattccactgt GCF_003668045 aaacaaacgcaatcgtaccgca-g-gaggctcagaggcatctttctgaaagcaactccactgc Beaver aaacaaacgtaaccgtatcaca-t-gaagctcagcga-gtccttctgaaagcaattccgctgt B D Squirrel aaaaaaatgtaacaatatcgca-c-gggtttcggagtcgtc---ctgaaatccatcccactgt B D Guinea pig aaacaaacttagccgtatcaca-t-gaggctctgcgccgttctttctaaagcagttccactgt B D Rabbit aaacaaacgtaaccgtatcaca-t-ggggctcctcgcggtccttctgaaagcgattccactgt B D Pika aaacaaacggaaccgtatcaca-t-ggggctgtgcgccgtcattctaaaagcaattccgctgt B D Human aaacaaacgtaaccatatcaca-t-ggagctccacactgtccttctgaaagcaattccgctgt B D Chimp aaacaaacgtaaccatatcaca-t-ggagctccacactgtccttctgaaagcaattccgctgt B D Bonobo aaacaaacgtaaccatatcaca-t-ggagctccacactgtccttctgaaagcaattccgctgt B D Gorilla aaacaaacataaccatatcaca-t-ggagctccacactgtccttctgaaagcaattccgctgt B D Rhesus aaacaaacgtaatcatatcaca-t-ggagctccacactgtccttctgaaagcaattccactgt B D Marmoset aaacaaaagtaagcgtatcaca-c-ggagctccacaccatccttctgaaagcaattcagc-gt B D Tarsier aaacaaacgtaaccatatcaca-tgggggctccacgcaatccttctgaaagcaattccgctgt B D Bushbaby aaacaaacataagcccatcaca---ggggctgtgcatcgtctttctgaaagcaattccgctgt B D Malayan flying lemur aaacaaacgtaaccatatcaca-t-ggggctccgcgccgtccttctgaaagcaattccgccgt B D Pig aaacaaatataatcatatcaca-t-ggggttccgcgccgacctcctgaaagcaattccgctgt B D Dolphin aaacaaatataaccatatcaca-t-ggggcaccacgccgtccttctgaaagcaattccgctgt B D Cow aaacaaatataaccatatcaca-tgggggcaacgcgccgtccttctgaaaacaattccgctgt B D Sheep aaacaaatataaccatatcaca-tgggggcaacgcgccgtccttctgaaaacaattccgctgt B D Horse aaacaaatgtaaccatatcaca-t-ggggctccgcgccgtccttctgaaagcaattccgctgt B D Chinese pangolin taacaaatgtaatcatatcaca-t-ggggttccgcgccttccttctgaaagcaattccgttgt B D Dog aaacaaatgtaactatatcaca-t-ggggctctgcgccgtccttctgaaagcaattccgctgt B D Hawaiian monk seal aaacaaatgtaaccatatcaca-t-ggggctccgcgccgtccttctgaaagcaattccgctgt B D Hedgehog aaacaaacgtaaccatatcacagggggggctctgcgcagtccttctgaaagcaattccactgt B D Shrew aaacaaacgtaaccatatcaca-ggggggctccgcgcagtccttctgaaagcaattccgctgt B D Elephant aaacaaacttaaccatatcaca-c-gaggctccgcgccgtccttctgaaagcaattccgctgt B D Tenrec aaacaaacgtaaccatatcaca-c-ggggctcctcgccgtccttctgaaagcaattccgctgt B D Zebrafish =============================================================== B D X. tropicalis =============================================================== B D Opossum =============================================================== B D Chicken =============================================================== Alignment block 11 of 340 in window, 56737914 - 56737976, 63 bps B D Mouse tgaaaactgaaaaatgggtgtaatttgcgttcagaaagtgatg-ttagggtcacggcaatttcc B D Rat tgaaaactgaaaaacgggtgtaatctgcgttcagaaagtgatg-ttagggtcacagcaatttcc GCF_003668045 tgaaaactgaaaaatgggtgtaatttgcgttcagaaagtgatg-ttagggtcacagcaatttcc Beaver tgaaaactgaaaaatgggtgtaatttgcgttcagaaagtgatg-ctagggtcacagcaatttcc B D Squirrel tgaaaactgaaaaatgggtgtaatttgcgctcggaaagtgatg-ttagggtcacggcaatttcc B D Guinea pig tcaaaactgaaaaatgggtgtaattcgctttcagaaagtgacg-ttagggtcacggcaatttc- B D Rabbit tgaaaactgaaaaatgggtgtaatttgcgatcagaaagtgatg-ttagggtcatggcaatttcc B D Pika tgaaaactgaaaaatgggtgtaatttgcgatccgaaagtgatg-ttagggtcatggcaacttcc B D Human tgaaaactgaaaaatgggtgtaatttgctttcagaaagtaatg-ttagggtcacggcaatttct B D Chimp tgaaaactgaaaaatgggtgtaatttgctttcagaaagtaatg-ttagggtcacggcaatttcc B D Bonobo tgaaaactgaaaaatgggtgtaatttgctttcagaaagtaatg-ttagggtcacggcaatttcc B D Gorilla tgaaaactgaaaaatgggtgtaatttgctttcagaaagtaatg-ttagggtcacggcaatttcc B D Rhesus tgaaaactgaaaaatgggtgtaatttgcgttcagaaagtaatg-ttagggtcacggcaatttcc B D Marmoset tgaaaactgaaaaatgggtgtaatttgcgttcagaaagtaatg-gtagggtcacagcaatttcc B D Tarsier tgaaaactgaaaaatgggtgtaatttgcgttcagaaagtgatg-ctagggtcacggcaatttcc B D Bushbaby tgaaaactgaaaaatgggtgtaatttgcgttcagaaagtgatg-ttagggtcacggcaatttcc B D Malayan flying lemur tgaaaactgaaaaatgggtgtaatttgcgttcagaaagtgacg-ttagggtcacggcaatttcc B D Pig tgaaaactgaaaaatgagtgtaatttgcattcagaaagtgacg-ttagggtcacagcaatttcc B D Dolphin tgaaaactgaaaaatgggtgtaatttgcgttcagaaagtgatg-ttagggtcacagcaatttcc B D Cow tgaaaactgaaaaatgggtgtaatttgcgttcagaaagtgatg-ttggggtcacagcaatttcc B D Sheep tgaaaactgaaaaatgggtgtaatttgcgttcagaaagtgatg-ttggggtcacagcaatttcc B D Horse tgaaaactgaaaaatgggtgtaatttgctttcagaaagtgatg-ttagggtcacggcaatttcc B D Chinese pangolin tgaaaactgaaaaatgggtgtaatttgcattcagaaagtgatg-ttagggtcatggcaatttcc B D Dog tgaaaactgaaaaatgggtgtaatttgcgttcagaaagtgatg-ttagggtcatggcaatttcc B D Hawaiian monk seal tgaaaactgaaaaatgggtgtaatttgtgttcagaaagtgatg-ttagggtcatggcaatttcc B D Hedgehog tgaaagctgaaaaatgggtgtaatttgccttcagaaagtgatg-ttagggtcatggcaatttcc B D Shrew tgaaaactgaaaaatgggtgtaatttgcgttcagaaagtgatg-tgagggtcatggcaatttcc B D Elephant tgaaaactgaaaaatgggtgtaatttgcgttcagaaagtgatg-ttatggtcaccgcaatttcc B D Tenrec tgaaaactgaaaaatgggtgtaatttgcgttcagaaagtgatg-tcagggtcaccgcaatttcc B D Opossum tgaaaattgaactagggatgatctttagattcagaaagagatgtttaatgtaatggcattctcc B D Zebrafish ================================================================ B D X. tropicalis ================================================================ B D Chicken ================================================================ Inserts between block 11 and 12 in window B D Opossum 37bp Alignment block 12 of 340 in window, 56737977 - 56738006, 30 bps B D Mouse cggg-ccgttatttatttttactttaaagtc B D Rat aggg-ccgttatttatttttattttaaagtc GCF_003668045 cggg-ccgttatttatttttactttaaagtc Beaver cggg-ctgttatttatttttactttaaagtc B D Squirrel cggg-ccgttatttatttttactttaaagtc B D Guinea pig -agg-ccattatttattttttctttaacgtc B D Rabbit cggg-ccgttatttatttttactttaaagtc B D Pika cggg-ccgttatttatttttactttaaagtc B D Human cggg-ccgttatttatttttactttaaagtc B D Chimp cggg-ccgttatttatttttactttaaagtc B D Bonobo cggg-ccgttatttatttttactttaaagtc B D Gorilla cggg-ccgttatttatttttactttaaagtc B D Rhesus cggg-ccgttatttatttttactttaaagtc B D Marmoset cgggcccgttatttattttcactttaaagtc B D Tarsier cggg-ccgttatttatttttactttaaagtc B D Bushbaby cgag-ccgttatttatttttactttaaagtc B D Malayan flying lemur cggg-ccgttatttatttttactttaaagtc B D Pig cggg-ccgttatttgtttttactttaaagtc B D Dolphin cggg-ccgttatttatttttactttaaagtc B D Cow cggg-ccgttatttatttttactttaaagtc B D Sheep cggg-ccgttatttatttttactttaaagtc B D Horse cggg-ccgttatttatttttactttaaactc B D Chinese pangolin cggg-ccgttatttatttttactttaaagtc B D Dog cggg-ccattatttatttttactttaaagtc B D Hawaiian monk seal cggg-ccgttatttatttttactttaaagtc B D Hedgehog cggg-ccattatttattttcactttaaagtc B D Shrew cggg-ccattatttatttttactttaaagtc B D Elephant cggg-ccgttatttatttttactttaaagtc B D Tenrec cggg-ccgttatttatttttactttaaagtc B D Zebrafish =============================== B D X. tropicalis =============================== B D Opossum =============================== B D Chicken =============================== Alignment block 13 of 340 in window, 56738007 - 56738181, 175 bps B D Mouse ttt-agggaagatttgcttatagactc-gga-----tac-agtatgagaaccccggcaaccccgctcgcc B D Rat ttt-agggaagatttgcttgtagactc-ggaaaccttcc-agtatgagaacactagaaacctcgctcgcc GCF_003668045 ttc-agggaagatttgcttatatactc-ggaaaccttcc-agtacgagaaccccagcaatctcgctcgcc Beaver ttt-agggaagatttgcttatatactc-ggaaaccttcc-agggagagaatatcagcaatcccgctcgcc B D Squirrel ttt-agggaagatttgcttatgtactc-ggaaaccttcc-aatgcgaaaataccagcaatcccgctcgcc B D Guinea pig ttt-aaggaagatttgcttatatactcgggaaaccttcc-aatgcgagaataccagcaatcccgctcgcc B D Rabbit ttt-aggggagatttgcttatacgctc-ggaaaccttcc-agcgctccagctccggcaaccccgctcgcc B D Pika ttt-agggaagatttgcttatagactc-ggaaaccttcc-cattcgccaacaccggtcatcccgctggcc B D Human ttt-aggaaagatttgcttatatgctc-ggaaaacttccaaatgcgcgaataccagcaatcccgctcgcc B D Chimp ttt-aggaaagatttgcttatatgctc-ggaaaacttccaaatgcgcgaataccagcaatcccgctcgcc B D Bonobo ttt-aggaaagatttgcttatatgctc-ggaaaacttccaaatgcgcgaataccagcaatcccgctcgcc B D Gorilla ttt-aggaaagatttgcttatatgctc-ggaaaacttccaaatgcgcgaataccagcaatcccgctcgcc B D Rhesus ttt-aggaaagatttgcttatatgctc-ggaaaacttccaaatgcgagaataccagcaatcccgctcgcc B D Marmoset ttt-aggaaagatttgcttatatgctc-ggaaaacttccaaattctagaataccagcaatcccgctcgcc B D Tarsier ttt-aggaaagatttgcttatgtactc-ggaaaccttcc-aatgcgagaataccagcaatcccgctcgcc B D Bushbaby ttt-aggaaagatttgcttatatactc-ggaaaccttcc-aatgcgaggataccagccatcccgatcgcc B D Malayan flying lemur tta-agggcagatttgcttatatactc-ggaaaccttcc-aatgcgagaataccagcaatcccgctcgcc B D Pig ttt-agggaagatttgcttatatactc-gggaaccttcc-aatgcgagggtaccagcaatcctgctcgcc B D Dolphin ttt-agggaagatttgcttatatactc-gggaaccttcc-actgcgagggtaccaataatcccgcttgcc B D Cow ttt-agggaaggtttgcttatatactc-gggaactttcc-aatgcgagggcaccagcaatcccgcttgcc B D Sheep ttt-agggaaggtttgcttatatactc-aggaaccttcc-aatgcgagggcaccagcaatcccgcttgcc B D Horse ttt-agggaagatttgcttatgtactc-ggaaaccttcc-aatgcgagggtaccagcaatcccgctcgcc B D Chinese pangolin ttt-agggaagatttgcttatatactc-ggaagacttcc-aacgccagggtaccagcaatcccgttctct B D Dog ttt-agggaagatttgcttatatactc-ggaaaccttcc-aatgcgagggtaccaggaatccagttcgcc B D Hawaiian monk seal ttt-agggaagatttgcttatatactc-ggaaaccttcc-aatgcgagggtaccagcaatccagttcgcc B D Hedgehog ttt-agggaagatttgcttatatactc-ggaaaccttcc-aacgcgagggtactaggaattctcttcgcc B D Shrew ttt-aggaaagctttgctgatggactc-ggaaactttcc-aaggcgagggtaccagcaatcccgcttgcc B D Elephant ttt-agggaagatttgcttatgtactc-ggaaaccttcc-aatgcgagggtaccagcaatcccgctcgcc B D Tenrec tttaaggggaaatttgcttatgtactc-ggaaggcttcc-aacgcgaggggaccggcaaccccgctcgcc B D Opossum tgc-agggaaggcttccttagatatta-gcagatatt---agcatga-------agtgaacccgttcgcc B D Zebrafish ====================================================================== B D X. tropicalis ====================================================================== B D Chicken ====================================================================== Mouse ttcaa--------------------agc--------gg-gag------------------------ggg- Rat ttcaa--------------------cgc--------gg-gag------------------------ggg- GCF_003668045 ttcta--------------------ctc--------gg-gag------------------------ggg- Beaver ttcaa--------------------cgc--------gg-gag------------------------ggg- Squirrel ttcaa--------------------cgc--------gg-gag------------------------ggg- Guinea pig ttcag--------------------ctc--------gg-gag------------------------gggg Rabbit ctggt--------------------cgc--------tg-ggg------------------------gag- Pika ccggt--------------------cgc--------ggcggg------------------------gag- Human ttcaa--------------------cgc--------gt-gggg------------taa-------gggg- Chimp ttcaa--------------------cgc--------gt-gggg------------taa-----gggggg- Bonobo ttcaa--------------------cgc--------gt-gggg------------taa-----gggggg- Gorilla ttcaa--------------------cgc--------gt-gggg------------taa-------gggg- Rhesus ttcaa--------------------cgc--------gt-gggg------------taa--------ggg- Marmoset ttcaa--------------------cgc--------gg-gggt------------taa--------ggg- Tarsier atcaa--------------------cgc--------gg-ggg------------------------gag- Bushbaby ttccc--------------------cgc--------ga-aggg----------------------gtgg- Malayan flying lemur ttcaa--------------------cgc--------gg-gggg-----------------------ggg- Pig ttcaa--------------------agc--------gg-ggg------------------------gga- Dolphin ttcaa--------------------agc--------gg-ggg------------------------ggg- Cow ttcaa--------------------agc--------tg-ggg------------------------gaa- Sheep ttcaa--------------------agc--------gg-ggg------------------------gaa- Horse ttcat--------------------cgc--------gg-ggg------------------------gga- Chinese pangolin ttcaa--------------------cgc--------tg-ggg------------------------gga- Dog ttcaa--------------------cgc--------ga-ggg------------------------gga- Hawaiian monk seal ttcaa--------------------cgc--------gg-ggg------------------------gtg- Hedgehog cccaatgctgggtgggggaggtgggggt--------gt-ggg------------------------gag- Shrew ttcaa--------------------ggc--------gg-agg------------------------gag- Elephant ttcaa--------------------cgc--------gg-gggg-----------------------gac- Tenrec ttcga--------------------cacgggcagaggg-ggga-----------------------ggc- Opossum tttcg--------------------cct--------ag-gaatgctgttcttttctgaaacacaaagag- Zebrafish ====================================================================== X. tropicalis ====================================================================== Chicken ====================================================================== Mouse -gcctg-----------aa---------------ggtggagaacaattactgagtgacgctaatatgggg Rat -ggctg-----------aa---------------ggtggagaacaattactgagtgacgctaatatgggg GCF_003668045 -gactg-----------ga---------------ggtggagaacaattactgaatgacgctaatatgggg Beaver -gga-g-----------ga---------------ggtggagaacaattaccgagtgacgctaatatgggg Squirrel -ggaag-----------ga---------------ggtggagaacaattactgagtgacgctaatatgggg Guinea pig aggagg-----------ga---------------ggtggagaacaattactgagtgacgctaatatgggg Rabbit -g--------------------------------ggtagagaacaattactgagtgacgcttctacaggg Pika -g--------------------------------ggtggagaacaattactgagtgacgctcctacgggg Human -g--------------------------------ggtggggaacaattactgagtgacgctaatatgggg Chimp -g--------------------------------ggtggggaacaattactgagtgacgctaatatgggg Bonobo -g--------------------------------ggtggggaacaattactgagtgacgctaatatgggg Gorilla -g--------------------------------ggtggggaacaattactgagtgacgctaatatgggg Rhesus -g--------------------------------ggtggggaacaattactgagtgacgctaatatgggg Marmoset -g--------------------------------ggtggggaacaattactgagtgacgctaatataggg Tarsier -a--------------------------------gggggagaacaattactgagtgacgctaatacgggg Bushbaby -g--------------------------------ggtggagaacaattactgagtgacgctaatatgggg Malayan flying lemur -g--------------------------------ggtggaggacaattactgagtgacgctaatacgggg Pig -g---------------gg---------------ggtggagaacaattactgagtgacgctaatatgggg Dolphin -gggggggggagggggagg---------------ggtggagaacaattactgagtgacgctaatatgggg Cow -gg--------------gg---------------ggtggagaacaattactgagtgacgctaatgtgggg Sheep -ga--------------gg---------------ggtggagaacaattactgagtgacgctaatgtgggg Horse -g---------------gg---------------gctggagaacaattactgagtgacgctaatacgggg Chinese pangolin -g---------------cg---------------ggtggagaacaattaccgaatgacgctaatatgggg Dog -g---------------gg---------------ggtggagaacaattactgagtgacgctaatatgggg Hawaiian monk seal -g---------------ggggtgggggtggtggtggtggagaacaattactgagtgacgctaatatgggg Hedgehog -gggagcga--------gg---------------ggtggagaacaatcactgagtgacgctaatatgggg Shrew -ggaag-----------gg---------------ggtggagaacaattactgagtgacgctaatacgggg Elephant -g---------------gg---------------ggtggagaacaattactgagtgacgctaatacgggg Tenrec -g---------------gg---------------ggtggagaacaattacggagtgacgctaatatgggg Opossum -ggtag-----------gc---------------aggggagagaaatcgc-aactgaagtagatgctggg Zebrafish ====================================================================== X. tropicalis ====================================================================== Chicken ====================================================================== Mouse aaact-g-aaaagaaatgtcgattgtttttattgtaacagaaggag---------tgagcaaaca Rat aaact-g-aaaagaaatgtcgattgtttttattgtaatagaaggag---------tgagcaaaca GCF_003668045 aaact-g-aaaagaaatgtcgattgtttttattgtaatagaaggag---------tgagcaaaca Beaver aaact-g-aaaagaaatgtcgattgtttttattgtaatagaaggag---------tgagcaaaca Squirrel aaact-g-aaaagaaatgtcgattgtttttattgtaatagaaggag---------tgagcaaaca Guinea pig aaact-g-aaaagaaatgtcgattgtttttattgtaatagaaggag---------tgagcaaaca Rabbit aaccg-g-cagagaaaagtcgattgtttttattgtaatagaaggag---------tgagcaaaca Pika aaacg-g-cagagaaatgtcgattgtttttattgtaatagaaggag---------tgagcaaaca Human aaact-g-aaaagaaatgtcgattgtttttattgtaatagaaggag---------tgagcaaaca Chimp aaact-g-aaaagaaatgtcgattgtttttattgtaatagaaggag---------tgagcaaaca Bonobo aaact-g-aaaagaaatgtcgattgtttttattgtaatagaaggag---------tgagcaaaca Gorilla aaact-g-aaaagaaatgtcgattgtttttattgtaatagaaggag---------tgagcaaaca Rhesus aaact-g-aaaagaaatgtcgattgtttttattgtaatagaaggag---------tgagcaaaca Marmoset aaact-g-aaaagaaatgtcgattgtttttattgtaatagaaggag---------tgagcaaaca Tarsier aaact-g-aaaagaaatgtcgattgtttttattgtaatagaaggag---------tgagcaaaca Bushbaby aaact-g-aaaagaaatgtcgattgtttttattgtaatagaaggag---------tgagcaaata Malayan flying lemur aaact-g-aaaagaaatgtcgattgtttttattgtaatagaaggag---------tgcgcaaaca Pig aaact-g-aaaagaaatgtcgattgtttttattgtaacagaaggag---------tgtgcaaaca Dolphin aaact-g-aaaagaaatgtggat--gttttattgtaacagaaggag---------tgtgcaaaca Cow aaact-g-aaaagaaatgtcgattgtttttattgtaacagaaggag---------tgtgcaaaca Sheep aaact-g-aaaagaaatgtcgattgtttttattgtaacagaaggag---------tgtgcaaaca Horse aaact-g-aaaagaaatgtcgattgtttttattgtaacagaaggag---------tgagcaaaca Chinese pangolin aaact-g-gaaagaaatgtcgattgtttttattgtaacagaaggag---------tgagcaaaca Dog aaact-g-aaaagaaatgtcgattgtttttattgtaacagaaggag---------tgaacaaaca Hawaiian monk seal aaact-g-aaaagaaatgtcgattgtttttattgtaacagaaggag---------tgaacaaaca Hedgehog aaact-gaaaaagaaatgccgattgtttttattgtaacagaaggag---------tgagcaaaca Shrew aaact-g-aaaagaaatgtcgattgtttttattgtaatagaaggag---------tgagcaaaca Elephant aaact-g-aaaagaaatgtctattgtttttattgtaacagaaggag---------tgagcaaaca Tenrec aaactgg-aaaagaaatgtctattgtttttattgtaacagaaggag---------tgagcaaaca Opossum aaacc-g-aaaagaaatgtctattgttttta----aaccggggggggggggggtctgagcaaaaa Zebrafish ================================================================= X. tropicalis ================================================================= Chicken ================================================================= Inserts between block 13 and 14 in window B D Opossum 62bp Alignment block 14 of 340 in window, 56738182 - 56738209, 28 bps B D Mouse gaaaaaccaaccccggctgatcggaaac B D Rat gaaaaaccaaccggggctgatcggaaac GCF_003668045 gaaaaaccaaccccggctgatcggaaac Beaver gaaaaaccaaccccgggtgatcggaaac B D Squirrel gaaaaaccaaccccgggtgatcggaaac B D Guinea pig gaaaaaccaacccggggtgatcggaaac B D Rabbit gaaaaaccagccccgggtgatcggaaac B D Pika gaaaaaccaacctcgggtgatcggaaac B D Human gaaaaaccaaccccgggtgatcggaaac B D Chimp gaaaaaccaaccccgggtgatcggaaac B D Bonobo gaaaaaccaaccccgggtgatcggaaac B D Gorilla gaaaaaccaaccccggctgatcggaaac B D Rhesus gaaaaaccaaccccgggtgatcggaaac B D Marmoset gaaaaaccaaccccgggtgatcggaaac B D Tarsier gaaaaaccaagcccgggtgatcggaaac B D Bushbaby gtaaaaccaaccccgggtgatcggaaac B D Malayan flying lemur ttaaaaccaaccccgggtgatcgcaaac B D Pig gaaaaaccaaccccgggtgatcggaaac B D Dolphin gaaaaaccaaccctgggtgatcggaaac B D Cow gaaaaaccaaccccgggtgatcggaaac B D Sheep gaaaaaccaaccccgggtgatcggaaac B D Horse gaaaaaccaaccccgggtgatcggaaac B D Chinese pangolin gaaaaaccaaccccgggtgatcggtaac B D Dog gaaaaaccaaccctgggtgatcggaaac B D Hawaiian monk seal gaaaaaccaaccccgggtgatcggaaac B D Hedgehog gaaaaaccaacccgggatgatcggaaac B D Shrew gaaaaaccaaccccgggtgatcggaaac B D Elephant gaaaaaccaacccggggtgatcggaaac B D Tenrec ggaacgccaaccccgggtgatcggaaac B D Zebrafish ============================ B D X. tropicalis ============================ B D Opossum ============================ B D Chicken ============================ Alignment block 15 of 340 in window, 56738210 - 56738220, 11 bps B D Mouse aggcaggcgga B D Rat aggcaggcgga GCF_003668045 aggcaggcgga Beaver aggcaggcgga B D Squirrel aggcagacgga B D Guinea pig aggcaga-gga B D Rabbit aggcaggcgga B D Pika aggcaggcgga B D Human aggcaggcgga B D Chimp aggcaggcgga B D Bonobo aggcaggcgga B D Gorilla aggcaggcgga B D Rhesus aggcaggcgga B D Marmoset aggcaggcgga B D Tarsier aggcaggagga B D Bushbaby aggcaggcgga B D Malayan flying lemur aggcaggcaga B D Pig aggcaggcgga B D Dolphin aggcaggcgga B D Cow aggcaggcgga B D Sheep aggcaggcggg B D Horse aggcaggcgga B D Chinese pangolin aggcaggcgaa B D Dog aggcaggcggg B D Hawaiian monk seal aggcaggcggg B D Hedgehog aggcaggcgga B D Shrew aggcaggcgga B D Elephant aggcaggcgga B D Tenrec aggcaggcgga B D Opossum aagcagtagaa B D Zebrafish =========== B D X. tropicalis =========== B D Chicken =========== Alignment block 16 of 340 in window, 56738221 - 56738275, 55 bps B D Mouse gaatgaaaagtgggtttcaggccgcaacaggcccctccctcccctggcctgggaa--------- B D Rat gaatgaaaagtgggtttcaggccgcaacaggcccctccctcccctggcctgggac--------- GCF_003668045 gaatgaaaagtgggtttcaggccgcaacaggcccctccctcccctggcctgggaa--------- Beaver gaattaaaagcgggtttcaggccgcaacaggc----ccctcccctgccctcggaa--------- B D Squirrel gaattaaaagcgggtttcaggccgcaacaggc----ccctcccctgccctcggaa--------- B D Guinea pig aaattaaaagcgggtttcaggccgcagcaggc----ccctcccctgccctgggca--------- B D Rabbit gaattaaaagcgggtttcgggcggcaacaggc----ccctcctctgccctccgaa--------- B D Pika gaattaaaagcggctttcgggcggccacaggc----ccctcccctgccctcggag--------- B D Human gaattaaaagcgggtttcagacagcaacaggc----ccctcccctgctctcgcaa--------- B D Chimp gaattaaaagcgggtttcagacagcaacaggc----ccctcccctgctctcgcaa--------- B D Bonobo gaattaaaagcgggtttcagacagcaacaggc----ccctcccctgctctcgcaa--------- B D Gorilla gaattaaaagcgggtttcagacagcaacaggc----ccctcccctgctctcgcaa--------- B D Rhesus gaattaaaagcggatttcagacagcaacaggc----ccctcccctgccctcgcaa--------- B D Marmoset gaattaaaagcgggtttcaggcagcaacaggc----ccctcccctgccctcgcaa--------- B D Tarsier gaattaaaagcgggtttcaggaggcagcaggc----ccctcccctgccctcggaa--------- B D Bushbaby gaatt-aaagccggtttcaggcggcaataggc----ccctcccctgcccttggaa--------- B D Malayan flying lemur gaattaaaagcgggtttcaggcggcagcagac----acctcccctgccctccgga--------- B D Pig gaattaaaagcgggtttcaggcagcaacaagc----ccctcccctgccctcggaa--------- B D Dolphin gaattaaaagcgggtttcaggcggcaacaagc----ccctcccctgccctcggaa--------- B D Cow gaattaaaagcgggtttcaggcggcaacaagc----ccctcccctgccctcggaa--------- B D Sheep agaaataaagcgggtttcaggcggcaacaagc----ccctcccctgccctcggaa--------- B D Horse gaattgaaagcgggtttcgagcggcaacaggc----ccctcccctgccctcggaa--------- B D Chinese pangolin gaattaaaagcgggtttcaggagggaacaggc----ccct-ccctgccctcgctt--------- B D Dog gaattaaaagcgggtttcaggctgcaacaggc----ccctcccctgcccttggaa--------- B D Hawaiian monk seal gaattaaaaacgggtttcgggcggcaacaggc----ccctcccctgcccttggaa--------- B D Hedgehog gaattaaaagcgggtttcggaaggtcgcaggc----ccctcccctgagcagcgat--------- B D Shrew gaattaaaagcgggtttcgggcggcaacaggc----ccctcccctgctctcggaa--------- B D Elephant gaattaaaagcgggtttcaggcggcagcaggcc---ccctcccctgccctcggaa--------- B D Opossum gaattaaaagcgggtttctagt--tagttggc----ccctcctct--cattgaaagaaggggaa B D Tenrec NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN B D Zebrafish ================================================================ B D X. tropicalis ================================================================ B D Chicken ================================================================ Inserts between block 16 and 17 in window B D Dolphin 532bp Alignment block 17 of 340 in window, 56738276 - 56738285, 10 bps B D Mouse ggagcgagcc---- B D Rat ggagagagcc---- GCF_003668045 ggagagagcc---- Beaver ggaga-agcc---- B D Squirrel gaagaacgcg---- B D Guinea pig ggagagcgcg---- B D Rabbit ggaga-agcg---- B D Pika agaga-agcg---- B D Human ggagaaagcg---- B D Chimp ggagaaagcg---- B D Bonobo ggagaaagcg---- B D Gorilla ggagaaagcg---- B D Rhesus ggagaaagcg---- B D Marmoset ggagaaagcc---- B D Tarsier ggagaaagcg---- B D Bushbaby gaagaaagcg---- B D Malayan flying lemur ggagaaagcg---- B D Pig ggagaaagag---- B D Dolphin ggagaaagag---- B D Cow ggagaaagcg---- B D Sheep ggagaaagcg---- B D Horse ggagaaagcg---- B D Chinese pangolin ggaaaaagcg---- B D Dog ggagaaagcg---- B D Hawaiian monk seal ggagaaagcg---- B D Hedgehog ggagagagcg---- B D Shrew gggaaaagcg---- B D Elephant ggagaaagcg---- B D Opossum ----agagctatcc B D Tenrec NNNNNNNNNNNNNN B D Zebrafish ============== B D X. tropicalis ============== B D Chicken ============== Inserts between block 17 and 18 in window B D Opossum 2199bp Alignment block 18 of 340 in window, 56738286 - 56738329, 44 bps B D Mouse gg-gctaag-cgctcgctg--------------------------------------------------g B D Rat ggctctaag-cgctcgccg--------------------------------------------------g GCF_003668045 ggtgctgag-cgctcgcgg--------------------------------------------------g Beaver ggcgatgag-cgttcgcagccgg--c-ggggcc----gc-tccca----------------------cag B D Squirrel gacggtgag-cgctagcagtccg--c-cgcgca----ga-tcccg----------------------cag B D Guinea pig ggcgcggag-cgct-gcagcccg--c-ggggca------------------------------------g B D Rabbit ggcgctgag-cgctcgcagccgg--c-gggact----gaccccca----------------------cgg B D Pika ggcgaggag-cgctcgccgccgg--t-ggggcc----ga-tccca----------------------ggg B D Human ggcgacgag-cgctcgcagcccg--t-ggggct----ga-tccca----------------------cct B D Chimp ggcgacgag-cgctcgcagcccg--t-ggggct----ga-tccca----------------------cct B D Bonobo ggcgacgag-cgctcgcagcccg--t-ggggct----ga-tccca----------------------cct B D Gorilla ggcgacgag-cgctcgcagcccg--t-ggggct----ga-tccca----------------------cct B D Rhesus ggcgacgag-ctctctcagccgg--tgggggca----ga-tccca----------------------ccg B D Marmoset ggcgactag-cgttcgcagcccg--t-ggggcc----ga-tccca----------------------ccg B D Tarsier ggcgacaag-cgctcgcagcccg--c-ggggca----ga-tcccg----------------------tgg B D Bushbaby ggcgacgag-cgctcgcagcccg--c--gggtc----ga-tccca----------------------cgg B D Malayan flying lemur ggcggtgag-cgctc-cagcccg--c-ggggca----ga-tccca----------------------cgg B D Pig agtgaggag-cgctcgcagcccc----agggcc----ga-tccca----------------------tgg B D Dolphin ggtgaggag-cgctcgcaccccc----agggcg----ga-tccca----------------------cgg B D Cow ggtgaggag-cgctcgcagcccc----agggcg----ga-tccca----------------------cgg B D Sheep ggtgaggag-cgctcgcagcccc----aaggcg----ga-tcccg----------------------cgg B D Horse ggcgaggcg-cgcttgccgcc----g-cgggcc----ca-tccca----------------------cag B D Chinese pangolin ggcgaggag-cgctcgcagccct--g-gggggc----ta-tccca----------------------ccg B D Dog ggtgccgag-cgctctcagcccc----ggggcg----ca-tcaca----------------------cgg B D Hawaiian monk seal ggtaaggag-cgctctcggcccc--g-ggggcc----ca-tccca----------------------cgg B D Hedgehog ggaggggagaccctgcacccccccgg-ggggctcatgcg-gcctaggggctctggacttggggctaccgg B D Shrew ggagccgtggctctcgaagcccc----ggggcc----ca-tcccaggg-------------------cgg B D Elephant gtccaggag-cgctcgcagcccc----tgggcc----ga-tccct----------------------cgg B D Tenrec NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN B D Zebrafish ====================================================================== B D X. tropicalis ====================================================================== B D Opossum ====================================================================== B D Chicken ====================================================================== Mouse -ac-tccagcactggcatctcgcgaccg------- Rat -ac-tccagcactggctccttgcagccg------- GCF_003668045 -ac-ccca----cagcctccagcg----------- Beaver -cc-cgcagctctcgggactggccacag------- Squirrel -cc-tttagcgggcggagctggccgctg------- Guinea pig -ac-ccca----cagcccgccgcgctcg------- Rabbit -cc-cgccgcgctccggacaggccgctg------- Pika -cc-ggctgagctcggcaca-gccgctg------- Human -cc-cgcagggctccggtcgtgtcgctg------- Chimp -cc-cgcagggctctggccgcgtcgctg------- Bonobo -cc-cgcagggctctggccgcgtcgctg------- Gorilla -cc-cgcagggctccggccgcgtcgctg------- Rhesus -cc-cgcagggctcaggtcccgtcgctg------- Marmoset -cc-agcagcactccggccgggtcgccg------- Tarsier -cc-cgcagcgctcgggcctggtcgcag------- Bushbaby -cg-tg-agcgcaccaacctggtcgctg------- Malayan flying lemur -cc-cgcagctcccgggactggccgccg------- Pig -cca------------------------------- Dolphin -cca------------------------------- Cow -cca------------------------------- Sheep -cca------------------------------- Horse -cc-------------------------------- Chinese pangolin -cc-------------------------------- Dog ccc-------------------------------- Hawaiian monk seal -cc-------------------------------- Hedgehog ----------------------------------- Shrew ----------------------------------- Elephant -cc-cgc-gcgctcgcgactggcggctggcggctg Tenrec NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN Zebrafish =================================== X. tropicalis =================================== Opossum =================================== Chicken =================================== Inserts between block 18 and 19 in window B D Sheep 350bp B D Hedgehog 12bp B D Shrew 12bp Alignment block 19 of 340 in window, 56738330 - 56738447, 118 bps B D Mouse tccagccc--ctgctc-t------------------ccggggacgtcttcccagctctcg----c----- B D Rat tccagccc--ctaccg-g------------------ccgtgggcatcttcccagctcttg----c----- GCF_003668045 -ccagccc--ctgcgc-c------------------gggggagcctcttcccagctcttg----c----- Beaver tctgacctg-caggac-g------------------cggggaggaatgtcccagctctagtcgac----- B D Squirrel tcgaacccg-cagcac-t--------------------atgaagaatttcagagctcgag----t----- B D Guinea pig ctcgggcgg-ccgcgc-aggga--------------ccgcgagagctccgcgcgctgctg----c----- B D Rabbit cccg------cggcgc-t------------------ggtgcacggattgctcagccgccg----c----- B D Pika cccggccctccggtgc-g------------------gctgcacgactcgctcagtcccgg----c----- B D Human tcgga-ccg-cagaac-g------------------ccgggacgcatttccgagctcggg----c----- B D Chimp tcggacccg-cagaac-g------------------ccgggacgcatttccgagctcggg----c----- B D Bonobo tcggacccg-cagaac-g------------------ccgggacgcatttccgagctcggg----c----- B D Gorilla tcggacccg-cagaac-g------------------ccgggacgcatttccgagctcggg----c----- B D Rhesus tcggaccct-cagaac-g------------------ccgggacgcatttccgagctcggg----c----- B D Marmoset tcggaccag-cagaac-g------------------cggagatgcatttcggagctaggg----c----- B D Tarsier tcggacccg-ccgcgctg------------------cggggcgggattttcgagctcggg----c----- B D Bushbaby tccgaccca-ctgtgc-g------------------gcccaggggatttctgagctcggg----c----- B D Malayan flying lemur tcggacccg-ccgcgc-g------------------ccgggagggatttccgagctcggg----c----- B D Pig -------------------------------------gcagcgggacttccgcgctctgg----c----- B D Dolphin -------------------------------------gcagcgagatttccgcgctctgg----c----- B D Cow -------------------------------------gcggcgggatttccgcgctcccg----c----- B D Horse ------------------------------------cgcagcgggatctctgcgctccgg----cc---- B D Chinese pangolin ------------------------------------tgcagggagatttccgcactctgc----ccaccc B D Dog ------------------------------------cgcagcgggatttctgcgctctg----------- B D Hawaiian monk seal ------------------------------------cgcagcgggatttccgcgctctgg----c----- B D Hedgehog ------------------tggggctaccgccaagcgcggggtggggcctcccagctctgg----c----- B D Shrew ------------------cccgtccgtagcc---ctttgggggcggatttcaacgctcgg----c----- B D Elephant -cggacccg-cagc---g------------------ccagaaggaatttcagcgctgggg----c----- B D Sheep ====================================================================== B D Tenrec NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN B D Zebrafish ====================================================================== B D X. tropicalis ====================================================================== B D Opossum ====================================================================== B D Chicken ====================================================================== Mouse ----------------c-----caccct---------cccgcag----cctc-------acctgccgcag Rat ----------------c-----caccct---------ccggcag----cctc-------acctgccgcag GCF_003668045 ----------------c-----ctccct---------cggtcag----cctt-------acctgctacag Beaver ----------------c-----cgcctg---------cctgctg----ccccccgagcaatcttaaggag Squirrel ----------------c-----caccct---------cgggctg----cagcttgagctgcctcgcggag Guinea pig ----------------a-----ggcgcc---------gtggccg----cagc---agccacttcgcgcgg Rabbit ----------------cgccggagcccg---------tccgctg----ccgcccgacccgcctcgccggg Pika ----------------cgt---agcccg---------cccgcggctgcccgcccgatccacctcgtccag Human ----------------c-----cgacccaa-------cccgctg----ccattctagctacctagtggag Chimp ----------------c-----cgacccaa-------cccgctg----ccattctagctacctagtggag Bonobo ----------------c-----cgacccaa-------cccgctg----ccattctagctacctagtggag Gorilla ----------------c-----cgacccaa-------cccgctg----ccattctagctacctagtggag Rhesus ----------------c-----cgacccaa-------cccgctg----ccattctagctacctcgtggag Marmoset ----------------c-----tgacccaa-------cccactg----ccattcttgctacctcgtggag Tarsier ----------------c-----cgtccccgagccgttctagccg----ctgttctagctactaagtggaa Bushbaby ----------------g-----ggacccgg-------tccgcct----ctgcgctagctgccttgcagag Malayan flying lemur ----------------t-----cgaccccg-------cgcgctg----ccgccct-gatacc--gaggag Pig ----------------c-----agaccccg-------tgggctg----ctgccct--------------- Dolphin ----------------a-----ggaccccg-------cgagctt----ctgcctt--------------- Cow ----------------a-----ggaccccg-------cgggctg----ctgccct--------------- Horse -----------------------cgacccg-------ccggctg----ctcgcct--------------- Chinese pangolin tccaccttccttccacc-----actccccg-------ccgccgg----ctgccct--------------- Dog ----------------g-----ggaccctg-------cacgctg----ctgtcct--------------- Hawaiian monk seal ----------------g-----ggaccctg-------cttgcta----cggccct--------------- Hedgehog ----------------c-----agaccttg-------cgggttt----cttctcc--------------- Shrew ----------------c-----cgacgcct-------cgggctg----ctgcccc--------------- Elephant ----------------c-----cgaccctg-------ccagctg----ttgccctcactacccggcccag Sheep ====================================================================== Tenrec NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN Zebrafish ====================================================================== X. tropicalis ====================================================================== Opossum ====================================================================== Chicken ====================================================================== Mouse aggag-gaagccttctcggtatgcgaggttcctccatctggcgg-aaggct-- Rat aggag-aaaagcctttcggaatgtgaggttcctccatctggtgg-aaggct-- GCF_003668045 aggtg-gaaagggtctcggtgtgcgtggttcgtcaggccgaagc-aaggcg-- Beaver tggtg-gaaaagctcttgaactgtgaagttcg-------gttgg-aaggct-- Squirrel ctagg-cagagggttctgaacagggaggcttatccgt---gaaa-aaggct-- Guinea pig ccggg-gaaaga--ctggagtcccgaggcttgtcggt----gga-aaggct-- Rabbit cc-gg-g-------ctcaggctgggggac------------cgc-aaggct-- Pika ccggg-g-------cacaggc-------------------------------- Human ccgcg-gagagactcttgaaccgtgaggctccttgat----gag-aaggt--- Chimp ccgcg-gagagactcttgaaccgtgaggctccttgat----gag-aaggt--- Bonobo ccgcg-gagagactcttgaaccgtgaggctccttgat----gag-aaggt--- Gorilla ccgcg-gagagactcttgaaccgtgaggctccttgat----gag-aaggt--- Rhesus tcacg-gagagactcttgaaccgtaaggctccttgat----gag-acggt--- Marmoset ccg-g-gagaggctcttgaaccgtgaggctccttggt----gag-aaggt--- Tarsier cccag-gcgaggctcttcaa-----aggct----------------------- Bushbaby ccggg-gaaaggctctggaaccgtgagactggttagt----gag-aaggt--- Malayan flying lemur tcgggagaaaggctctcgaaccgtgaggcttgttggc----gag-aaggc--- Pig ctggg-gaaagggtcttgaatcgtgggcaccatcagc----cga-aggga--- Dolphin ctggg-gaaagggtcttgaatcgtgagcaccaccagc----tgg-aaggc--- Cow ctggg-gaaaaggtctcgaaccgtgagcaccagcagc----cag-aaggc--- Horse ctggg-gaaagggtcttgagccgtgagcatcgtcggc----ggg-aaggc--- Chinese pangolin ctggg-gaaacggtctggaattgggagcagcgtcggc----gga-aaggc--- Dog ctggg-gaaa-ggtcttgaatcgtaagcatcgtcggc----agg-aaggc--- Hawaiian monk seal ctggg-gaaagggtcttgaatcctaagcatcgtcggc----agg-aaggc--- Hedgehog cgggg-gaaagggtcttgaatcttgaggatcatgggc----ggcggagaa--- Shrew tgggg-gagagggtcttggctcgagaggatcttcagt----tgc-caggc--- Elephant ctggg-gaaaatctcttgaactgtgaggctctgtagg----cgg-gaagc-ct Sheep ===================================================== Tenrec NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN Zebrafish ===================================================== X. tropicalis ===================================================== Opossum ===================================================== Chicken ===================================================== Inserts between block 19 and 20 in window B D Human 1bp B D Chimp 1bp B D Bonobo 1bp B D Gorilla 1bp B D Rhesus 1bp B D Marmoset 1bp B D Tarsier 275bp B D Bushbaby 1bp B D Malayan flying lemur 1bp B D Pig 1bp B D Dolphin 1bp B D Cow 1bp B D Horse 1bp B D Chinese pangolin 1bp B D Dog 1bp B D Hawaiian monk seal 1bp B D Hedgehog 1bp B D Shrew 1bp Alignment block 20 of 340 in window, 56738448 - 56738480, 33 bps B D Mouse ga-acagccagta---------agcaacgcttc---ggtagtca---gt B D Rat ga-acagccagaa---------agcgacgcttc---gggagtcc---tt GCF_003668045 ga-acagtcagga---------agcaacgctcc---gggagtcc---tt Beaver aaggcggtcgcgg---------ggcgactgtgc---gagcatcatcttc B D Squirrel ga-gcagtcgccg---------ggcgactctcc---agcattt----tc B D Guinea pig aa-gcggccgcga---------ggcgactctcc---gagcatct---tc B D Rabbit ct-tctgtgagaa---------ggca----------gggaggca---gc B D Pika ---tctgtacgaa---------ggcag---------gggaggcg---gt B D Human ga-gaggctgccg---------ggctattctcc---gagcatct---tc B D Chimp ga-gaggctgccg---------ggctattctcc---aagcatct---tc B D Bonobo ga-gaggctgccg---------ggctattctcc---aagcatct---tc B D Gorilla ga-gagg----------------------attc---gagcatct---tc B D Rhesus ga-gagaccgcgg---------ggctattctcc---aagcatct---tc B D Marmoset ga-gaggccgcgg---------ggatattctcc---gagcatct---tt B D Bushbaby ga-gaggcggcaa---------ggagactctta---gagcatct---tt B D Malayan flying lemur ga-gcgtccgcgg---------agcgactctccgaggagaatct---tc B D Pig ga-gaggacgtgggaaggcattagcgactttcg---gagaattt----- B D Dolphin ga-gaggacgcggagaggccttagaggctttcg---gagaaatt----- B D Cow gc-gagaacgcagggagaccttagggactttcg---gagcattt----- B D Horse gg-gaggc-----------cttggcgactctcg---gagaatct---tc B D Chinese pangolin ga-gaggccgcggggaagtcctggcaactctgg---aagaagct---tc B D Dog ga-gaggcggcagggagtccttggagattctcc---gagaatta---tc B D Hawaiian monk seal ga-gaggcgacagggaggctttggcgattctcg---gagaatct---tc B D Hedgehog ca-gaggc-----------ctgggcaaagctca---gagcatct---tc B D Shrew ga-gaggc-----------ct-ggtggctcccg---gagcactt---tt B D Elephant ga-gaggctggga---ggccgtggcgaccattg---gagcatct---tc B D Sheep ================================================= B D Tenrec NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN B D Tarsier ================================================= B D Zebrafish ================================================= B D X. tropicalis ================================================= B D Opossum ================================================= B D Chicken ================================================= Inserts between block 20 and 21 in window B D Pig 3bp B D Dolphin 3bp B D Cow 3bp B D Horse 1bp B D Chinese pangolin 1bp B D Dog 1bp B D Hawaiian monk seal 1bp B D Hedgehog 1bp B D Shrew 1bp Alignment block 21 of 340 in window, 56738481 - 56738632, 152 bps B D Mouse ggg-----------------c----------tccaa-tt-------ga----agtcc-----------cc B D Rat ggg--------------------------------------------------gtcc-----------cc GCF_003668045 ggg-----------------c----------tccac-tt-------gg----ggtcc-----------ct Beaver ggg-----------------ccgtgctctgttcctc-tg-------gg----gggtc-----------cc B D Squirrel gcg-----------------c----------ggcgc-tc-------ggcatcgggtt-----------cc B D Guinea pig gga-----------------c----------tgcga-ct-------gt--------c-----------cc B D Rabbit ggg-----------------g----------------gc-------gc----agctc-----------cg B D Pika agg-----------------gc---------gccgc-tc-------gc----agccc-----------cg B D Human cgg-----------------ccgagctctgctcctc-tc-------cg-----tgcg-----------ct B D Chimp cgg-----------------ccgagctctgctcctc-tc-------gg-----tgcg-----------ct B D Bonobo cgg-----------------ccgagctctgctcctc-tc-------gg-----tgcg-----------ct B D Gorilla cgg-----------------ccgagctctgctcctc-tc-------gg-----tgcg-----------ct B D Rhesus cgg-----------------tcgcgctctgctcctc-tc-------gg-----tgcg-----------ct B D Marmoset cgg-----------------ccgctctctactcctc-ta-------gg-----agcg-----------ct B D Bushbaby cgg-----------------ctgcgctccgctcctcttc-------cg-----cgct-----------ag B D Malayan flying lemur cgg-----------------ccgcactttgctcctc-tt-------cg-----ggtgtggggggc---cc B D Pig agg-----------------t----------tcctc-tt-------gg----gggcc-----------ct B D Dolphin agg-----------------c----------tcctc-tt-------gg----gggcc-----------cc B D Cow agg-----------------t----------tcctc-tt-------gg----gggcc-----------cc B D Sheep agg-----------------t----------tcctc-tt-------gg----gggcc-----------cc B D Horse ggg-----------------c----------tcttt-tt-------ga----gggcc-----------cc B D Chinese pangolin ggg-----------------c----------tcctc-ct-------gc----gggcc-----------cg B D Dog ggg-----------------c----------tcctt-ct-------gg----gggctgcccccccgcagg B D Hawaiian monk seal ggg-----------------c----------tcctt-ct-------gg----aggccgcctcccc---ca B D Hedgehog ggggaacccgtacaccccacc----------cccgc-accggaggagg----gagt------------cc B D Shrew ggg-----------------c----------tccgc-tt-------gg----gggc------------cc B D Elephant cgg-----------------ctacgatcggctgctc-tc-------gg----gagcc-----------cc B D Tenrec NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN B D Tarsier ====================================================================== B D Zebrafish ====================================================================== B D X. tropicalis ====================================================================== B D Opossum ====================================================================== B D Chicken ====================================================================== Mouse tg-----------aagcttctgg-ct-------gcgcg-------------ggttc-------gtccaca Rat tg-----------aagcttctgg-ct-------gcccg-------------ggtgc-------gtccgca GCF_003668045 tg-----------caacttctgg-ct-------acgct-------------ggtgc-------atctgcc Beaver tg-----------cggcttct-------------cctt-------------gg--------------gca Squirrel tg-----------aaacttct-------------cctt-------------gg----------------- Guinea pig tg-----------tgacttct-------------cctt-------------gg--------------gcc Rabbit ag-----------catcttccgg-cttctcctcgggcg-------------ggcgc-------gtgcgct Pika cg-----------cgtccaccgg-cc-------------------------------------------- Human tg-----------cggcttctcc-tt-------gggct-------------agcgc-------gtccgca Chimp tg-----------cggcttctcc-tt-------gggct-------------ggcgc-------gtccgca Bonobo tg-----------cggcttctcc-tt-------gggct-------------ggcgc-------gtccgca Gorilla tg-----------cggcttctcc-tt-------gggct-------------ggcgc-------gtccgca Rhesus tg-----------cggcttctcc-tt-------gggct-------------ggcgc-------gtccaca Marmoset tg-----------cgacttctcc-gt-------gggct-------------ggcgc-------gtccgca Bushbaby ag-----------tggcttctcc-tt-------gggct-------------ggtgc-------gtccgca Malayan flying lemur tg-----------cggcttctcc-----------agct-------------ggcgc-------attagcg Pig ag-----------tggtctcttc-tt-------gggttggtgcatccc---gctgtgtccgcagtccgca Dolphin ag-----------cggcctctac-tt-------gggctggtgggtccc---gctgc-------gtctgca Cow ag-----------cggcctctac-tt-------gggctggtgcgtccg---gatgc-------gtccgca Sheep ag-----------cggcctctac-tt-------gggcgggtgcgtccg---gatgc-------gtccgca Horse tg-----------cggcctctac-gt-------gggctggttggttca---gccgc-------gtccgca Chinese pangolin tgcnnnnnnnnnncagccta-------------gggctctttcctctagccgccgc-------ctccgc- Dog cccc---------ccgccttcacttt-------gggctggtgtatcct---gcggc-------gtccgcg Hawaiian monk seal tccc---------ccgcctccac-tt-------gggctgattcgtccc---gcggc-------gtccgca Hedgehog tg-----------agacctctgt-tt-------gcgcgggtgcctccc---gaggt-------tttgtca Shrew ag-----------cggcctcgac-cc-------gggcgggtgcatccc---gaggc-------tccggtc Elephant tg-----------ggctctct---tt-------aggcgggtgtgtctg---gtcgc-------gttccca Tenrec NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN Tarsier ====================================================================== Zebrafish ====================================================================== X. tropicalis ====================================================================== Opossum ====================================================================== Chicken ====================================================================== Mouse gcgtcgtcgt---cgccagcgagccaagggcaac-aggtcagtgtga---gcgcccctctcgc-----gc Rat gcctcgtcgg---cggcggcgagccaaggccaac-aggtcagtgtg-----------------------c GCF_003668045 gcgttgccg---------gcgagccaaggccagc-aggtcagtgtgc---gcacccctcccgc-----gc Beaver gcctcgcca------------agtcccggcccgc-aggtcagtgtgt---gggcgccttccgc-----gc Squirrel ------------------gatggtgcagaaccgc-aggtcagtgtgt---gggcgcctcccgc------- Guinea pig gattcgtcggaaaccacgccgagtcctggcaggc-aggtcagtgtct---gtgcgccg--cgc-----at Rabbit gcgctgcca------------gttccag---agc-aggtcagtgtgt---gggtcctctccggcgt---- Pika ---cggcca------------agtccag---agc-aggtcagtgcgtaggggggcttctccgcctccggc Human gtccctcca------------agtccaggcc-gc-aggtcagtgtgc---gggcgcctcctgt------- Chimp gtccctcca------------agtccaggcc-gc-aggttagtgtgc---gggcgcctcctgt------- Bonobo gtccctcca------------agtccaggcc-gc-aggttagtgtgc---gggcgcctcctgt------- Gorilla gtccctccg------------agtccaggcc-gc-aggtcagtgtgc---gggcgcctcctgt------- Rhesus gtccctcca------------agtccaggcc-gc-aggtcagtgtgt---gggcgcctcctgt------- Marmoset gtccctcca------------agttcaggccggc-aggtcagtgtgc---tggcgccacaagt------- Bushbaby ctcccgcca------------agtccaggccagc-aggtcagtgtgt---gggtgcctcctat------- Malayan flying lemur gcccagcca------------ggtccaggccagc-aggtcagtgtat---gggcgcctcctgc------- Pig gctcggcga------------attccaggctgtcaaggtcagtgtct---ggccaccccac--------- Dolphin gcccagcga------------agtacaggctggc-aggtcagtgtct---ggacactccctg-------- Cow gcccggcga------------agtacaggctggc-aggtcagtgcct---ggacaccccct--------- Sheep gcccggcga------------agtacaggctggc-aggtcagtgcct---ggacaccccct--------- Horse tcccggcga------------cgtccagcccgga-aggtcagtgtgt---gggcatc------------- Chinese pangolin ccccgcccg------------cggccccactggc-agatccgt--------------------------- Dog gccgggcta------------agtccaggcctgc-aggtcagtgtgt---gggcacctcca--------- Hawaiian monk seal gcccggcta------------agtccaggcctgc-aggtcagtgtgt---gggcaccccca--------- Hedgehog gccccacaa------------agtccaggctggc-aggtcagtgagt---gtagtcccc----------- Shrew gatccgccg------------agtgggtgctggc-aggtcagtgagc---gggcgcccccc--------- Elephant gctccgcca------------agtccaggccagc-aggtcagtatgt---g------------------- Tenrec NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN Tarsier ====================================================================== Zebrafish ====================================================================== X. tropicalis ====================================================================== Opossum ====================================================================== Chicken ====================================================================== Mouse taccctat---------ccttc----------------------cctgt------ca-------gaaga- Rat taccctac---------ccttc----------------------cctga------ca-------gagga- GCF_003668045 tatccttc---------cctac----------------cccaggcctgg------tt-------gagga- Beaver ttccctta---------tctca-t--------------ccttggcctgt------ct-------aagggt Squirrel -atccttc---------cccctaa--------------ctcgggcatgg------tt-------aat--- Guinea pig ttccccgc---------cccac-----------------tctggcctgg------cc-------aaagcc Rabbit -------c---------ctctc--------------------ggcctgg------tt-------ggggc- Pika tatcctgc---------ctccc--------------------accccgc------ccctgcccggaggc- Human cctcctct---------cccac---------------------------------ca-------gagga- Chimp cctcctct---------cccac---------------------------------ca-------gagga- Bonobo cctcctct---------cccac---------------------------------ca-------gagga- Gorilla cctcctct---------cccac---------------------------------ca-------gagga- Rhesus cctcctct---------cccac----------------tccggatctgcctggggca-------gagga- Marmoset cctcctct---------cccac----------------cccgggtctggctgggaca-------gagga- Bushbaby ccttccca---------cccac----------------tctgggcctggctggcgcc-------cagga- Malayan flying lemur acccccac---------ccccg-------------------gggcctggctgggact-------gagga- Pig ccccgcac---------ccctt-ccattaccaccaccaccctggcctggttggggct-------gaagg- Dolphin ccccccatcacc-----ccccc-ccccccccgcc----ccccggcctggctgaggct-------gaggg- Cow cccctcaccaccac---cacca-ccaccaccaccactaccctggcctggctgaggct-------gagcg- Sheep cccctcatcaccaccagcacca-ccaccaccaccactaccctggcccggctgaggct-------gagcg- Horse --ccccat---------ccc------------------tcagggcctggctggggct-------gaggg- Chinese pangolin ---ccagg---------ccc------------------gcag---------------------------- Dog caccccaa---------ccc------------------aggaggcctggctggggct-------g-ggg- Hawaiian monk seal caccccaa---------ccc------------------agggggcctggctggggct-------gaggg- Hedgehog --tgtcct---------ccacg--------------------ggcctggcttgg------------ggg- Shrew tttctcct---------ccccg-atctggctggga---ctgaggccgggcgagg------------ctg- Elephant gcgcttct---------cgctc---------------------gcctggctggggct-------gaggc- Tenrec NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN Tarsier ====================================================================== Zebrafish ====================================================================== X. tropicalis ====================================================================== Opossum ====================================================================== Chicken ====================================================================== Mouse ------------tc--------------------------------cct----gt---------ag-ct- Rat ------------cc--------------------------------cct----gc---------aggct- GCF_003668045 ------------cc--------------------------------cct----gc---------aggct- Beaver g------aggacct--------------------------------cct----gt---------gggct- Squirrel ------------ac--------------------------------cct----gc---------gggct- Guinea pig actgactggagcaa--------------------------------cct----gtgtgtgtgtaggggg- Rabbit -tca----ggatcc--------------------------------cctgcgggc---------tatcc- Pika -ccagcggggactc--------------------------------ccc----gc---------tctcc- Human ------------cc--------------------------------cct----ga---------gggct- Chimp ------------cc--------------------------------cct----ga---------gggct- Bonobo ------------cc--------------------------------cct----ga---------gggct- Gorilla ------------cc--------------------------------cct----ga---------gggct- Rhesus ------------cc--------------------------------cct----ga---------aggct- Marmoset ------------cc--------------------------------act----ga---------gggct- Bushbaby ------------cc--------------------------------ccc----gc---------aggct- Malayan flying lemur ------------cc--------------------------------cct----g---------------- Pig ------------cc--------------------------------cgt----tc---------tggct- Dolphin ------------cc--------------------------------cgt----gc---------gggct- Cow ------------cc--------------------------------cgg----gc---------aggcg- Sheep ------------cc--------------------------------cgg----gc---------aggcg- Horse ------------cc--------------------------------cc-----gc---------gggca- Chinese pangolin ----------------------------------------------ct-----cc---------gggtg- Dog ------------cc--------------------------------ctg----gc---------agtctc Hawaiian monk seal ------------cc--------------------------------ctg----gc---------ggtct- Hedgehog ------------tc--------------------------------cct----gt---------gggct- Shrew ------------tcctgtctccccccacacaccccccacggctcttccc----tc---------gagcc- Elephant ------------tc--------------------------------ctc----gc---------gcgct- Tenrec NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN Tarsier ====================================================================== Zebrafish ====================================================================== X. tropicalis ====================================================================== Opossum ====================================================================== Chicken ====================================================================== Mouse ggc----tccg Rat gac----tctg GCF_003668045 ggc----cctg Beaver gtc----tccc Squirrel gac----tccc Guinea pig gtc----tctt Rabbit ttc----caac Pika gcc----caac Human gtc----tcca Chimp gtc----tcta Bonobo gtc----tcca Gorilla gtc----tcca Rhesus gtc----tccc Marmoset gtc----tcca Bushbaby gtc----ttc- Malayan flying lemur --c----ccca Pig gtc----tct- Dolphin gtt----tct- Cow gtc----tct- Sheep gtc----tct- Horse gcc----tct- Chinese pangolin gac----cct- Dog gtc----cct- Hawaiian monk seal gtc----tct- Hedgehog ggcgggggct- Shrew gcc----gcc- Elephant gtc----tct- Tenrec NNNNNNNNNNN Tarsier =========== Zebrafish =========== X. tropicalis =========== Opossum =========== Chicken =========== Inserts between block 21 and 22 in window B D Malayan flying lemur 7bp Alignment block 22 of 340 in window, 56738633 - 56738737, 105 bps B D Mouse tcctcagcccccagtgcttgtttct-tcta---gctg---cagcc----acc-----------cgccgc- B D Rat tcctcagtccccagtggctatttctatcca---gctg---ctgcc----acc-----------cgcgtc- GCF_003668045 tccccatacctcagtggttgcttcc-tcta---gctgctactgcc----acc-----------cgggat- Beaver ttcccagtcccccaaagtcatttgc-ttta---gacg---ccgtcct-tgcc-----------cgcggca B D Squirrel ttcttagcacctaatgtttgttccc-tttg---gtggtcccagctttggacc-----------cgcagc- B D Guinea pig tcttcagctccccgcgttggttcgc-ttta---gcct---tggcccct-gcc-----------tgaggc- B D Rabbit ctccccg-gccccgcgatcgtgccc-cttaggtgccg---ccgtc----tct-----------tgcggc- B D Pika ctccctgcgctgggcgattgaaccc-ttta---gccg---ctgtg----tcc-----------gccggc- B D Human tccccaat-ccccgcgactgctcct-ttta---gccg---ccatc----ccc-----------tcccgc- B D Chimp tccccaat-ccccgcgactgctcct-ttta---gccg---ccatc----ccc-----------tcccgc- B D Bonobo tccccaat-ccccgcgactgctcct-ttta---gccg---ccatc----ccc-----------tcccgc- B D Gorilla tctccaat-ccccgcgactgctcct-ttta---gccg---ccatc----ccc-----------acccgc- B D Rhesus tccccaat-ccccgagactgctcct-ttta---gcgg---ccgcc----ccc-----------tcccgc- B D Marmoset ttcccaatcccccgctactgcacca-ttta---gcca---ccgcc----ccc-----------ttccgc- B D Tarsier tcccccttcccctgaggttgtttcc-ttca---gccc---ccgcc----cgc-----------agctcc- B D Bushbaby tcctctatcccgggccattcttccc-ttta---gccg---ctgtt----ccc-----------gcccgc- B D Malayan flying lemur -----agt-ctccgcggttgttccc-ttta---gctg---ccgcc----ccc-----------accc--- B D Pig -----------------ttcttctc-tcta---gcag---ct-------tct--gaccccagtcgcggc- B D Dolphin cccaca---ccgcctggctcttccc-tgta---gccg---ccgcc----tcc--gacctcgcccgcggc- B D Cow cccaca---ccccctggctcttctc-tcta---gccg---ctgcc----tcc--gaccccgcccgcggt- B D Sheep cccaca---ccccctggctcttccc-tcta---gccg---ccgcc----tcc--gcccccgcccgcggt- B D Horse ccccca---tcccagggctctttcc-t-tg---gccg---ccgcc----ccc--gtccccgcccgtggc- B D Chinese pangolin ccttcg-----------------cc-t-tg---ggca---cgggg----tgc--gcttccggctgccac- B D Dog ccctca---ccccaaagcttttccc-tcta---gccg---ccgcc----ccc---actccacccgcggc- B D Hawaiian monk seal ccctcg---ccccaaagcttttccc-tcta---gccg---ccgct----ccc--gactccgcccgcggc- B D Hedgehog ccccca---cccc-----------c-tccc---agct---cttct----ctctggcctccgcctgtggc- B D Shrew ccccca---cccccgg--------c-tccg---cccg---cggct----cccagcgctccgcagatcgc- B D Elephant tccccagccccttgctacgctgttc-cttt---gccg---ctgcc----ccg---------cccgcggc- B D Tenrec NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN B D Zebrafish ====================================================================== B D X. tropicalis ====================================================================== B D Opossum ====================================================================== B D Chicken ====================================================================== Mouse -ttggg-a----c-----------atagagttgc--t--gggc--gagccttctt-gggt-gaacctggc Rat -ttggg-c----c-----------atagatttgc--t--aggc--gagccttcttagggt-gaacctggc GCF_003668045 -tcggg-a----c-----------acaaatttgt--t--gggc--aagcctcctc-gggt-ggaccgggc Beaver tcttgg-g----c-----------atatccttgc--g--gcg---aagcagtcca-aggc-ggacccttt Squirrel -tccaa-g----c-----------acggatctgc--c--tgg---------acta-gggt-ggacccctt Guinea pig -ttcag-g----a-----------gctgatcggcttt--gggc--gagcagccca-gggg-ggacccatt Rabbit -gtcac-c----c-----------gcagatctgg--c--aggtc-cagcagccct-gggt-ggacgctcc Pika -tccac-g----c-----------gcagatctgg--c--ggctcaaagcagcctt-gagt-ggactctcc Human -----a-g----c-----------gcagatcctg--caggggc--cagcggtcca-gggc-ggaccctcc Chimp -----a-g----c-----------gcagatcctg--caggggc--cagcggtcca-gggc-ggaccctcc Bonobo -----a-g----c-----------gcagatcctg--caggggc--cagcggtcca-gggc-ggaccctcc Gorilla -----a-g----c-----------gcagatcctg--caggggc--cagcggtcca-gggc-ggaccctcc Rhesus -----a-g----c-----------gaagatcctg--ca-gggc--cagcggtcct-gggc-ggaccctcc Marmoset -----a-g----c-----------gcagatgctg--ca-gggc--cagcggtcca-ggga-ggacccacc Tarsier -----acg----c-----------gcagatccgg--cg-gggc--cagcagtcca-gggt-gaaccctcc Bushbaby -----g---------------------------------cggc--ccgcagtcta-gggg-ggaccctcc Malayan flying lemur -------g----c-----------gttgatccgg--cg-gggc--cagcagtcca-ggtt-gaaccctcc Pig -tccac-g----c-----------ataggttggg--tc-catc--cctcagctca-tggt-ggacc---- Dolphin -tccac-g----c-----------gcagatagag--tc-cagc--ccgcagctca-gggt-ggaccttcc Cow -ccccg-g----c-----------gcagataggg--tc-cagc--ccgcggccct-gggt-ggaccctcc Sheep -cccgg-g----c-----------tcagataggg--tc-cagc--ccgcggccca-gggtgggaccctcc Horse -tcccc-g----c-----------gcaggtccgg--cc--ggc--ccgcagctca-gggt-ggaccctcc Chinese pangolin -gtgcc-g----cagcagtcgcaggaaggtcgag--tg--ggcg-tgggagctgc-ggct-g-------- Dog -tctacgg----c-----------gcagatcccg--cc-tggc--ccgcagctca-gggt-g-gacctcc Hawaiian monk seal -tccac-g----c-----------gcagatccct--cc-tggc--ccgcagctcc-gggt-g-gacctcg Hedgehog -ttcat-gcgccc-----------acggggcatg--ac-ccccg-cagcggcccg-ggtg-g-gtcactt Shrew -cgcag------c-----------tctgggcggt--ac-cctc--cggggtctcg-gaat-c-gtcgggg Elephant -tccac-g----c-----------gccagtcgcg--cc-gggc--ggccggccgg-tgga-ggatcctcc Tenrec NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN Zebrafish ====================================================================== X. tropicalis ====================================================================== Opossum ====================================================================== Chicken ====================================================================== Mouse c-t-ggc-tgtggttg Rat c-t-ggc-cgtgagtg GCF_003668045 t-t-agc-cgttggag Beaver a-t-gat-cttgggca Squirrel c-taggc-cttgggca Guinea pig c-t-ggc-cttgagca Rabbit c-g-tgc-cttgggct Pika c-a-ggc-ctcgggct Human c-t-cgc-cctgggcg Chimp c-t-cgc-cctgggcg Bonobo c-t-cgc-cctgggcg Gorilla c-t-cgc-cctgggcg Rhesus c-t-ctc-cccgggcg Marmoset c-t-agc-cccgggcg Tarsier c-t-cgc-cttgggcg Bushbaby c-t-tgc-ctttggct Malayan flying lemur t-t-cgc-ct------ Pig --t-ctc-cttagaca Dolphin c-t-ctc-tttaggca Cow c-t-ctc-cttaggca Sheep ctt-ttc-cttaagca Horse c-t-ggc-ctagggca Chinese pangolin ---------------- Dog c-t-ggc-ctcgggca Hawaiian monk seal c-t-cgc-cttggcca Hedgehog c-t-cgc-ctggggca Shrew a-a-cgctccgggacg Elephant c-t-ggc-cttgggcg Tenrec NNNNNNNNNNNNNNNN Zebrafish ================ X. tropicalis ================ Opossum ================ Chicken ================ Inserts between block 22 and 23 in window B D Chinese pangolin 91bp Alignment block 23 of 340 in window, 56738738 - 56738833, 96 bps B D Mouse cggg-gcgc----------gccggttgc-cc------tgacactttctg-----gggagcttagt----- B D Rat acag-acgc----------gccggttgc-cc------tgacacttactg-----gggagcttagc----- GCF_003668045 cggg-gcgc----------gtcgcttgc-cc------cgacatttgctg-----ggaaactcagg----- Beaver ccagcgcgc--ttccggctgccacttgc-tc------tggcacttgctg-----gag-gcgcagt----- B D Squirrel cggg-gcac-------gcttctggctgc-ccctgttgcagcagttgcta-----cgaggtgcagt----- B D Guinea pig cggg-gcacacttctggctgccacttgc-ca------cgcgactgacct-----ga--gcacctt----- B D Rabbit cggg-gcgcgcttccggttgccacttgc-gg------cgacagtcgctg-----ggaggaacagc----- B D Pika ccgg-ccgctcttccgactgccactcgc-gg------ggacagtcgcgg-----gaaggagcagc----- B D Human cggg-gcgagcttctggctgtcacttgc-cg------ctgcagtttcag-----ggaaactcagc----- B D Chimp cggg-gcgagcttctggctgtcacttgc-cg------ctgcagtttcag-----ggaaactcagc----- B D Bonobo cggg-gcgagcttctggctgtcacttgc-cg------ctgcagtttcag-----ggaaactcagc----- B D Gorilla cggg-gcgagcttctggctgtcacttgc-cg------ctgcagtttcag-----ggaaactcagc----- B D Rhesus cggg-gcgagcttctggctgtcacttgc-cg------ctgcagtttctg-----ggaaactcagt----- B D Marmoset ccgg-gcagtcttccggttgtcacttgc-ag------ctgcagtttctg-----ggaaactcagt----- B D Tarsier cggg-gcgcccttccggctaccacttgc-cg------ccgcagtcgctg-----gggagcccagt----- B D Bushbaby cagg-gtgcactta-ggatgccacttgc-gg------c-gccgttgcggggggtgggggggcact----- B D Malayan flying lemur -----------gtccggctgccacttgc-ag------cggcagttgctg-----ggaggcccagtgggca B D Pig cct--gtacacttcaggctgccgcgtgc-gg------cagaagaagctg-----ggaggacgagt----- B D Dolphin ccgg-gtgcgcctccggctgccacgtgc-ta------cagcagacgctg-----ggaggtccagt----- B D Cow ccgg-gtgcgcttccggctgccacgtgc-gg------cagcagacactg-----ggaggtccagt----- B D Sheep cccg-gtgcgcttcaggctgccacgtgcagg------cagcagacactg-----gga-gtccagt----- B D Horse cggg-gtgcgcttcaggctgccacgtgc-gg------ccgcggtcgcca-----agaggtcgagt----- B D Dog cagg-gcgcgcttccggctgccacgtgc-cg------cagcaggcgctg-----ggaggtcgagt----- B D Hawaiian monk seal cagg-gtgcgcttccggctgccacgtgc-cg------cagcgggcgctg-----ggaggttgagt----- B D Hedgehog cggg-gcgcgctgcctgctgccacgtgc-gg------ccgcgctggccg-----ggaggccgagt----- B D Shrew c-ga-gtgcgccg---------aggagc-gg------ccgccgagcctt-----cgaggccgag------ B D Elephant cggg-atgcgcttccggctgccacgtgc-gg------cggtagtcgctg-----ggagaccgagt----- B D Tenrec NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN B D Zebrafish ====================================================================== B D X. tropicalis ====================================================================== B D Opossum ====================================================================== B D Chicken ====================================================================== B D Chinese pangolin ====================================================================== Mouse -----tgggtgc-----gctgaac----actgaccctgcaagg--------------------------- Rat ------gggtgt-----gctgagc-----caggccctgcaagg--------------------------- GCF_003668045 ------gggtg------aaggaac----gcagactctgcaagg--------------------------- Beaver ------gggcg------gaggagtcgccgttgacgctgtgaga--------------------------- Squirrel ------gggca------gaggaaccgatgctgaccgtgtgaag--------------------------- Guinea pig ------gggcg------gaggagccaccgttgactccgagagg--------------------------- Rabbit ------gggcg------ggggagcggtctccgaccgtggcagg--------------------------- Pika ------gggcg------gagaagcggcctctgaccccggcagg--------------------------- Human ------tggcc-----------------gcttaccctgcaaga--------------------------- Chimp ------tggcc-----------------gcttaccctgcaaga--------------------------- Bonobo ------tggcc-----------------gcttaccctgcaaga--------------------------- Gorilla ------tggcc-----------------gcttaccctgcaaga--------------------------- Rhesus ------tggcc-----------------ccttaccctgcaaga--------------------------- Marmoset ------tggct-----------------gctgaccctgcaaga--------------------------- Tarsier ------gggct-----------------gctgaccctgcgaca--------------------------- Bushbaby ------gggcc-----------------gctga-cttgcaggg--------------------------- Malayan flying lemur gaggagtggcc-----------------gctgaccctgcgagg--------------------------- Pig -------ggtg------gaggggtagtcgctgaccctaccaag--------------------------- Dolphin ------gggca------g-ggggctgacgctgaccctaccggg--------------------------- Cow ------gggcg------gaggggcggccgctgaccccaccagg--------------------------- Sheep ------gggcg------ggggggcggccgctgaccctacc-gg--------------------------- Horse ------gggcg------gaggagcggccgctca-cctgcgagg--------------------------- Dog ------aggcg------gaggagcggccgctgaccccgagtgg--------------------------- Hawaiian monk seal ------aggcg------gaggagcggccgctgaccccgagggg--------------------------- Hedgehog ------gggcggaggacgcgggagcggcgctgaccctgcagggccgggcaaaaagcgcggcggatcccag Shrew -----------------acagcaccggggcagatcgcgctggg------------------ggtccgcgg Elephant ------gggcg------gaggagcggccggtggccctgcgaag--------------------------- Tenrec NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN Zebrafish ====================================================================== X. tropicalis ====================================================================== Opossum ====================================================================== Chicken ====================================================================== Chinese pangolin ====================================================================== Mouse ctg-------------ggccctaa-ctggg------aggc------------------------------ Rat ttg-------------ggccctaa-ttggg------cggc------------------------------ GCF_003668045 ctg-------------ggccctga-ttgag------cgcc------------------------------ Beaver cca-------------ggcctcaa-tagtg------ggcc------------------------------ Squirrel cag-------------ggccttcg-ctgtg------ggcc------------------------------ Guinea pig -------------------------------------gcc------------------------------ Rabbit ccg-------------agtcctag-cagtg------ggca------------------------------ Pika ccg-------------ggtcacag-cggtg------ggtg------------------------------ Human cgg-------------ggacatag-cagag------ggcc------------------------------ Chimp cgg-------------ggacatag-cagag------ggcc------------------------------ Bonobo cgg-------------ggacatag-cagag------ggcc------------------------------ Gorilla cgg-------------ggacatag-cagag------ggcc------------------------------ Rhesus cgg-------------ggacatag-cagcg------ggcc------------------------------ Marmoset ccg-------------ggacagag-cagcg------ggcc------------------------------ Tarsier ctg-------------ggacaccg-tactg------ggcc------------------------------ Bushbaby ----------------------ag-cggtg------ggac------------------------------ Malayan flying lemur ccg-------------ggacatag-cagtg------ggcc------------------------------ Pig cca-------------gaatgtag-tattg------ggcc------------------------------ Dolphin ccg-------------ggacttag-cattg------ggcc------------------------------ Cow ccg-------------aaacgtag-catgg------ggcc------------------------------ Sheep ccg-------------gaacgtag-catct------ggcc------------------------------ Horse ccg-------------ggacacag-cagcg------ggcc------------------------------ Dog ccg-------------ggacggag-cagtg------ggca------------------------------ Hawaiian monk seal ccg-------------ggaccgag-cagtg------ggca------------------------------ Hedgehog ccggagccccaaacctgggcgtggacagcgcagtttggcc------------------------------ Shrew ccg-------------cggcgtgg-ctgcgcgcttgggcg------------------------------ Elephant cca-------------gagcccgg-ctgtg------ggcctctgggcttggaacccgcgccctgggcgtt Tenrec NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN Zebrafish ====================================================================== X. tropicalis ====================================================================== Opossum ====================================================================== Chicken ====================================================================== Chinese pangolin ====================================================================== Mouse ----------------cagat Rat ----------------cagat GCF_003668045 ----------------cagat Beaver ----------------caggt Squirrel ----------------caggt Guinea pig ----------------cagtt Rabbit ----------------gaggt Pika ----------------gaggg Human ----------------gagtt Chimp ----------------gagtt Bonobo ----------------gagtt Gorilla ----------------gagtt Rhesus ---------------agagtt Marmoset ----------------gagtt Tarsier ----------------gaggt Bushbaby ----------------caggg Malayan flying lemur ----------------gaggt Pig ----------------gat-- Dolphin ----------------gat-- Cow ----------------gat-- Sheep ----------------gat-- Horse ----------------gat-- Dog ----------------ggt-- Hawaiian monk seal ----------------gat-- Hedgehog ----------------aga-- Shrew ----------------gcg-- Elephant ggcagcgtggtttcctgaggt Tenrec NNNNNNNNNNNNNNNNNNNNN Zebrafish ===================== X. tropicalis ===================== Opossum ===================== Chicken ===================== Chinese pangolin ===================== Inserts between block 23 and 24 in window B D Pig 37bp B D Dolphin 49bp B D Cow 49bp B D Sheep 49bp B D Horse 47bp B D Dog 36bp B D Hawaiian monk seal 39bp B D Hedgehog 1bp B D Shrew 1bp Alignment block 24 of 340 in window, 56738834 - 56738953, 120 bps B D Mouse ccgaa-----------------tgagtctagttgctt-ttt-tt--ttaaagtcaag------tgcaat- B D Rat ccgaa-----------------ggagcctagttgctt-ttt---------aggcaag------tgcaga- GCF_003668045 ccgaa-----------------ggagcctaattgtct-ttt------ctaagtcaag------cgcaat- Beaver ctgca-----------------gaagccgggcctctt-ttt-ct-gtctacacagcg------cgcaaa- B D Squirrel ctaga-----------------aaagccggaactctc-ccc-cccccccgccccgcgcctcaccgcaat- B D Guinea pig ctgga-----------------gaggcccggtctcc--------------------a------agcagt- B D Rabbit ctgca-----------------gcagcagagcctttt-ttc-tc--tctgcgccgct------ggcaat- B D Pika ctgcc-----------------gaagccgagcctctt-ttc-ca--tttgcgccgat-----gggcaat- B D Human ctgga-----------------gaagctgggcttgtt-ttt-ct-ctctgcaccgcg------cgcaatg B D Chimp ctgaa-----------------gaagctgggcttgtt-ttt-ct-ctctgcaccgcg------cgcaatg B D Bonobo ctgaa-----------------gaagctgggcttgtt-ttt-ct-ctctgcaccgcg------cgcaatg B D Gorilla ctgga-----------------gaagctgggcctgtt-ttt-ct-ctctgcaccgcg------cgcgatg B D Rhesus ctgga-----------------gaagctgggcctgtt-ttt-ct-ctctgcacagcg------cgcaata B D Marmoset ctgga-----------------gaagttgggcctgtt-ttt-ct-ctctgcgccgcg------cgcaatg B D Tarsier ctgga-----------------gaagctgggc----------ct-ctctacgccgcg------cgaaac- B D Bushbaby cggaa-----------------caagctgggtctctt-ttt-tt-ctccatgcctac------agtaat- B D Malayan flying lemur ctgga-----------------gaagcagggcctctt-ttt-cc-ctctaagccgca------cgcagt- B D Pig atg--------------------aagtccggcccctt-att-ct-ctccacgccgcg------cgcaat- B D Dolphin ctgga-----------------gaagcctggcctctt-tttcct-ctctacgcggcg------cgcaat- B D Cow ccgca-----------------caagtccggcctcct-ttt-ct-ctctacgaggcg------tgcaat- B D Sheep ccg--------------------aagtccggcctctt-ttt-ct-ctctacgaggcg------tgcaat- B D Horse ctgga-----------------gaagcccggcctc---ttt-ct-ctccacgccgcg------cgcaat- B D Chinese pangolin ctgga-----------------gatgtccggcccctt-ttt-ct-ctctacgccgcg------cgccat- B D Dog ctgcagaggact----------gaagtccggcctc---ctt-ta-ctctacgccgcg------ctcaat- B D Hawaiian monk seal gtggcgaggact----------gaagtccggcctc---ttt-tt-ctctacgccgcg------ctcaat- B D Hedgehog ctggaaaaaaaaaaaaaaaaaaaaaaaccagccgggcctct-ct-ccctcaggcgcg------cgcagt- B D Shrew ctgg------------------agaacccagccacttcctc-gt-ctctgcgccccg------cgcctc- B D Elephant ctgga-----------------gtagccaggcctt---ttg-ct-gtctacgacgcg------cgcaag- B D Tenrec NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN B D Zebrafish ====================================================================== B D X. tropicalis ====================================================================== B D Opossum ====================================================================== B D Chicken ====================================================================== Mouse gccacactca-cc-taacaca--gg------cgtgctgtaga----ggaactcaactcg-aggtccagcc Rat tccacattta-tt-taacacacagg------cgtgctgtaga----ggaactcgacgcg-aggtccagcc GCF_003668045 gccacacacg-----gatact--gg------cttgcg----------------cactcg-aggaccagcc Beaver ctc-cactcaccc-tggtagt--gg------ctttctggtgc----gggaatcgactcc-acgtcta--- Squirrel cccgggttcacct-tagcaat--gg------ctttcctgtga----gggaacc----------------- Guinea pig ctc-cactca-ac-cggcaga--gt------catttctgtgg----gggaaaagagtc---cgttttgcc Rabbit cccccactcaccctctgaaga--a-----------------------------gactc--aggtcaggcc Pika gccccgcacgctc-caggaga--g-----------------------------ggctc--gggtcaggcc Human ccccaactgaccc-tgaa------------------------------------------gggtcttgcc Chimp ccccaactgaccc-tgaa------------------------------------------aggtcttgcc Bonobo ccccaactgaccc-tgaa------------------------------------------aggtcttgcc Gorilla ccccaactgaccc-tgaa------------------------------------------aggtcttgcc Rhesus ccccaaatcatcc-tgaa------------------------------------------aggtcttgcc Marmoset ccccaactcaccg-tgaa------------------------------------------agggcttgac Tarsier cccccactcaccc-tggaagg--gg------cgctcccgtgc----ggcaacccaactcgaggtctttcc Bushbaby -ccccactcaccc-tggaaga--ga------cgctcacgtgg----ggaaaa--------tgatcttgtc Malayan flying lemur cccccactcacca-tggaagg--gg------ctctccggtgg----gggagc--------ccgacttgt- Pig ctttcgcctaccc-tggaaga--gg------cgctcccgtgg----gagaaccggatcggaaggcttgcc Dolphin ccttcacttaccc-tggaaga--gg------cactcccgtgg----gggaacaggatcggaggtcttgcc Cow ccttcacttacca--gcaaga--gg------agcttccgtgg----gggaaccggatcggagatcttgcc Sheep ccttcacttacca--ggaaga--gg------agctcccgtgg----ggaaacaggatcggagatcttgcc Horse ccttcacttactc-tggaaga--gg------agctcccgccg----gggagccggatccgagaccttgcc Chinese pangolin ccttcgcttgccc-cgaaaga--gg------tgctccggtgg----ggaaaccgaatacgagatcctgcc Dog ctttcacttaccc-tgaaaga--gg------cgctccctggg----gaggaccggattcgagatcttgtt Hawaiian monk seal ctttcacttaccc-tgaaaca-----------gctcccttgg----gagaaccggactcgagatcttgtt Hedgehog ctttgacttaccc-aggaaga--ga------cgctcccgcggg---gggaacagaattccagagatcgtc Shrew ccttcacttaccc-agagaga--g-------cagtagctcgggtgcgggaacgg---tgcggaggacg-- Elephant cccgcactcaccc-tcgaaga--gactcccccactcccgtgg----gggaactggccctgaggtcttgcc Tenrec NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN Zebrafish ====================================================================== X. tropicalis ====================================================================== Opossum ====================================================================== Chicken ====================================================================== Mouse tttgcctgaaaacttc-cccc---ag-a Rat tttgccggaaagtttc-cccc---ag-a GCF_003668045 actgcctgaaagtttc-ccct------- Beaver tttgcctagcattttc-cctt---ag-a Squirrel ----------agagtc-cctc---agaa Guinea pig tgtgcccaccattttc-actt---ga-t Rabbit tttagcaagtattttt-ctttcccgg-- Pika tgtagcaagcatttgc-cttt---gga- Human tttact--gcatttgc-cccc---ag-a Chimp tttact--gcatttgc-cccc---ag-a Bonobo tttact--gcatttgc-cccc---ag-a Gorilla tttagt--gcatttgc-cccc---ag-a Rhesus tttact--gcgttttc-tccc---ag-a Marmoset tttact--gcatgttc-ccca---gg-- Tarsier tttacc--gcatttcc-cctc---ag-a Bushbaby attatc--acatttcc-cctt---tg-g Malayan flying lemur tttacc--gcatttcc-cctc---ag-a Pig tctatc--gcgttttc-cctc---ag-a Dolphin tctact--atattctc-cctc---ag-a Cow tttacc--gtattctc-cctc---ag-a Sheep tctacc--gtattctc-cctc---ag-a Horse tctacg--gcattccc-cctc---gg-a Chinese pangolin cctatc--attttacc-cctc---ag-a Dog tctacc--tcattccctccac---tc-g Hawaiian monk seal tctatc--tcattccctcctc---ac-a Hedgehog tccacc--tctctccc-tctc---gg-a Shrew ---------------------------- Elephant tgtactgactgctttt-ccc-------- Tenrec NNNNNNNNNNNNNNNNNNNNNNNNNNNN Zebrafish ============================ X. tropicalis ============================ Opossum ============================ Chicken ============================ Inserts between block 24 and 25 in window B D Pika 59bp Alignment block 25 of 340 in window, 56738954 - 56738965, 12 bps B D Mouse cagctg------------------------caagaa B D Rat tagctg------------------------caaaaa GCF_003668045 ---------------------------------gaa Beaver ctgctg------------------------ggagaa B D Squirrel tggttg------------------------gaagaa B D Guinea pig tggctg------------------------gaagaa B D Rabbit -ggctg------------------------gaagaa B D Human ---cgg------------------------ctagaa B D Chimp ---cgg------------------------ctagaa B D Bonobo ---cgg------------------------ctagaa B D Gorilla ---cgg------------------------ctagaa B D Rhesus ---cgg------------------------ctagaa B D Marmoset -------------------------------cagaa B D Tarsier ---tgg------------------------ctggaa B D Bushbaby -------------------------------gagaa B D Malayan flying lemur ---cgg------------------------ctggaa B D Pig tgactg------------------------gaaaaa B D Dolphin cgactg------------------------gaagaa B D Cow cgactg------------------------gaagaa B D Sheep cgactg------------------------gaagaa B D Horse cggctg------------------------gaagaa B D Chinese pangolin tggctg------------------------gaagaa B D Dog aggctg------------------------gaagaa B D Hawaiian monk seal aggctg------------------------gaagaa B D Hedgehog aggctgtgctttgcaaaccagctctggatccttgca B D Shrew aggtctagttcgccgcacccgctctcagctgaagca B D Tenrec NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN B D Pika ==================================== B D Zebrafish ==================================== B D X. tropicalis ==================================== B D Opossum ==================================== B D Chicken ==================================== B D Elephant ------------------------------------ Inserts between block 25 and 26 in window B D Tarsier 46bp B D Malayan flying lemur 1bp Alignment block 26 of 340 in window, 56738966 - 56738970, 5 bps B D Mouse ctcac B D Rat ctcac GCF_003668045 ctcac Beaver ctaac B D Squirrel atcac B D Guinea pig gtcgc B D Rabbit gtcgc B D Human gtcaa B D Chimp gtcaa B D Bonobo gtcaa B D Gorilla gtcaa B D Rhesus gtcaa B D Marmoset gtcaa B D Bushbaby gtcat B D Malayan flying lemur -tcac B D Pig gtaac B D Dolphin ggaa- B D Cow gtaac B D Sheep gtaac B D Horse gtcac B D Chinese pangolin gtcac B D Dog gtcac B D Hawaiian monk seal gtcac B D Hedgehog actgc B D Shrew gtcgc B D Elephant ctca- B D Tenrec NNNNN B D Tarsier ===== B D Pika ===== B D Zebrafish ===== B D X. tropicalis ===== B D Opossum ===== B D Chicken ===== Inserts between block 26 and 27 in window B D Dog 78bp B D Hedgehog 4bp B D Shrew 3bp Alignment block 27 of 340 in window, 56738971 - 56738974, 4 bps B D Mouse agta B D Rat agtg GCF_003668045 tg-a Beaver tgta B D Squirrel tgta B D Guinea pig tata B D Human tgca B D Chimp tgca B D Bonobo tgca B D Gorilla tgca B D Rhesus tgca B D Marmoset tgca B D Bushbaby tgta B D Malayan flying lemur tgta B D Pig tgtc B D Cow tgtg B D Sheep tgtg B D Horse tgtg B D Chinese pangolin tgtg B D Hawaiian monk seal tgtg B D Hedgehog -act B D Shrew -gct B D Dog ==== B D Tenrec NNNN B D Tarsier ==== B D Pika ==== B D Zebrafish ==== B D X. tropicalis ==== B D Opossum ==== B D Chicken ==== B D Elephant ---- B D Rabbit ---- B D Dolphin ---- Inserts between block 27 and 28 in window B D Hedgehog 1bp B D Shrew 4bp Alignment block 28 of 340 in window, 56738975 - 56738976, 2 bps B D Mouse ct B D Rat ct GCF_003668045 ct Beaver ct B D Squirrel ct B D Guinea pig cg B D Human ct B D Chimp ct B D Bonobo ct B D Gorilla ct B D Rhesus ct B D Marmoset ct B D Bushbaby ct B D Malayan flying lemur ct B D Pig ct B D Dolphin ct B D Horse ct B D Chinese pangolin ct B D Hawaiian monk seal ct B D Hedgehog ct B D Sheep -- B D Dog == B D Tenrec NN B D Tarsier == B D Pika == B D Zebrafish == B D X. tropicalis == B D Cow -- B D Opossum == B D Chicken == B D Shrew == B D Elephant -- B D Rabbit -- Inserts between block 28 and 29 in window Beaver 1bp B D Squirrel 67bp B D Guinea pig 67bp B D Bushbaby 74bp B D Pig 152bp B D Horse 3bp B D Chinese pangolin 3bp B D Hawaiian monk seal 26bp B D Hedgehog 431bp Alignment block 29 of 340 in window, 56738977 - 56738977, 1 bps B D Mouse g B D Human a B D Chimp a B D Bonobo a B D Gorilla a B D Rhesus g B D Marmoset g B D Dolphin g B D Guinea pig = B D Sheep - B D Hawaiian monk seal = B D Dog = B D Horse = B D Tenrec N B D Tarsier = B D Hedgehog = B D Pika = B D Zebrafish = B D X. tropicalis = B D Cow - B D Opossum = B D Chicken = B D Shrew = B D Elephant - B D Squirrel = B D Pig = B D Rabbit - B D Chinese pangolin = B D Bushbaby = Beaver = B D Malayan flying lemur - GCF_003668045 - B D Rat - Inserts between block 29 and 30 in window B D Human 1bp B D Chimp 1bp B D Bonobo 1bp B D Gorilla 1bp B D Rhesus 35bp B D Marmoset 1bp Alignment block 30 of 340 in window, 56738978 - 56739054, 77 bps B D Mouse gtttttgtgtgtctttctttcttttctttctttctttctttctttctttctttctttctttctttctttc B D Dolphin ---------------------------------------------------------------------- B D Elephant ------gagtgcatttcgttc------------------------------------------------- B D Guinea pig ====================================================================== B D Sheep ---------------------------------------------------------------------- B D Rhesus ====================================================================== B D Hawaiian monk seal ====================================================================== B D Dog ====================================================================== B D Horse ====================================================================== B D Marmoset ====================================================================== B D Gorilla ====================================================================== B D Bonobo ====================================================================== B D Chimp ====================================================================== B D Human ====================================================================== B D Tenrec NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN B D Tarsier ====================================================================== B D Hedgehog ====================================================================== B D Pika ====================================================================== B D Zebrafish ====================================================================== B D X. tropicalis ====================================================================== B D Cow ---------------------------------------------------------------------- B D Opossum ====================================================================== B D Chicken ====================================================================== B D Shrew ====================================================================== B D Squirrel ====================================================================== B D Pig ====================================================================== B D Rabbit ---------------------------------------------------------------------- B D Chinese pangolin ====================================================================== B D Bushbaby ====================================================================== Beaver ====================================================================== B D Malayan flying lemur ---------------------------------------------------------------------- GCF_003668045 ---------------------------------------------------------------------- B D Rat ---------------------------------------------------------------------- Mouse tttcttt------- Dolphin -tgctct------- Elephant -tgctctgaaaacc Guinea pig ============== Sheep -------------- Rhesus ============== Hawaiian monk seal ============== Dog ============== Horse ============== Marmoset ============== Gorilla ============== Bonobo ============== Chimp ============== Human ============== Tenrec NNNNNNNNNNNNNN Tarsier ============== Hedgehog ============== Pika ============== Zebrafish ============== X. tropicalis ============== Cow -------------- Opossum ============== Chicken ============== Shrew ============== Squirrel ============== Pig ============== Rabbit -------------- Chinese pangolin ============== Bushbaby ============== Beaver ============== Malayan flying lemur -------------- GCF_003668045 -------------- Rat -------------- Inserts between block 30 and 31 in window B D Dolphin 8bp Alignment block 31 of 340 in window, 56739055 - 56739072, 18 bps B D Mouse ctttctttctttccttct B D Hawaiian monk seal cctgcctcctcaccttc- B D Guinea pig ================== B D Sheep ------------------ B D Rhesus ================== B D Dog ================== B D Horse ================== B D Marmoset ================== B D Gorilla ================== B D Bonobo ================== B D Chimp ================== B D Human ================== B D Tenrec NNNNNNNNNNNNNNNNNN B D Tarsier ================== B D Hedgehog ================== B D Pika ================== B D Zebrafish ================== B D X. tropicalis ================== B D Cow ------------------ B D Opossum ================== B D Chicken ================== B D Shrew ================== B D Elephant ------------------ B D Squirrel ================== B D Pig ================== B D Rabbit ------------------ B D Chinese pangolin ================== B D Dolphin ================== B D Bushbaby ================== Beaver ================== B D Malayan flying lemur ------------------ GCF_003668045 ------------------ B D Rat ------------------ Alignment block 32 of 340 in window, 56739073 - 56739075, 3 bps B D Mouse ttc B D Rabbit -tc B D Guinea pig === B D Sheep --- B D Rhesus === B D Hawaiian monk seal --- B D Dog === B D Horse === B D Marmoset === B D Gorilla === B D Bonobo === B D Chimp === B D Human === B D Tenrec NNN B D Tarsier === B D Hedgehog === B D Pika === B D Zebrafish === B D X. tropicalis === B D Cow --- B D Opossum === B D Chicken === B D Shrew === B D Elephant --- B D Squirrel === B D Pig === B D Chinese pangolin === B D Dolphin === B D Bushbaby === Beaver === B D Malayan flying lemur --- GCF_003668045 --- B D Rat --- Alignment block 33 of 340 in window, 56739076 - 56739077, 2 bps B D Mouse tt B D Rat -c GCF_003668045 -c B D Rabbit ac B D Guinea pig == B D Sheep -- B D Rhesus == B D Hawaiian monk seal -- B D Dog == B D Horse == B D Marmoset == B D Gorilla == B D Bonobo == B D Chimp == B D Human == B D Tenrec NN B D Tarsier == B D Hedgehog == B D Pika == B D Zebrafish == B D X. tropicalis == B D Cow -- B D Opossum == B D Chicken == B D Shrew == B D Elephant -- B D Squirrel == B D Pig == B D Chinese pangolin == B D Dolphin == B D Bushbaby == Beaver == B D Malayan flying lemur -- Inserts between block 33 and 34 in window B D Rabbit 2bp Alignment block 34 of 340 in window, 56739078 - 56739078, 1 bps B D Mouse t B D Rat t GCF_003668045 t Beaver t B D Rabbit t B D Malayan flying lemur c B D Cow t B D Sheep t B D Guinea pig = B D Rhesus = B D Hawaiian monk seal - B D Dog = B D Horse = B D Marmoset = B D Gorilla = B D Bonobo = B D Chimp = B D Human = B D Tenrec N B D Tarsier = B D Hedgehog = B D Pika = B D Zebrafish = B D X. tropicalis = B D Opossum = B D Chicken = B D Shrew = B D Elephant - B D Squirrel = B D Pig = B D Chinese pangolin = B D Dolphin = B D Bushbaby = Inserts between block 34 and 35 in window B D Malayan flying lemur 1bp B D Cow 4bp B D Sheep 4bp Alignment block 35 of 340 in window, 56739079 - 56739079, 1 bps B D Mouse t B D Rat g GCF_003668045 g Beaver g B D Rabbit g B D Human g B D Chimp g B D Bonobo g B D Gorilla g B D Marmoset g B D Malayan flying lemur g B D Guinea pig = B D Sheep = B D Rhesus = B D Hawaiian monk seal - B D Dog = B D Horse = B D Tenrec N B D Tarsier = B D Hedgehog = B D Pika = B D Zebrafish = B D X. tropicalis = B D Cow = B D Opossum = B D Chicken = B D Shrew = B D Elephant - B D Squirrel = B D Pig = B D Chinese pangolin = B D Dolphin = B D Bushbaby = Alignment block 36 of 340 in window, 56739080 - 56739096, 17 bps B D Mouse tcttatccatgtccagg B D Rat acaaatccacatgcggg GCF_003668045 aaat-ttcatgtccagg Beaver aaaa-tccctatccggg B D Rabbit aaaa-cccctgtccggg B D Human aaaa-tcccagtcccgg B D Chimp aaaa-tcccagtcccgg B D Bonobo aaaa-tcccagtcccgg B D Gorilla aaaa-tcccagtcccgg B D Marmoset aaaa-tcccagtcccgg B D Malayan flying lemur aaaa-cccctgtcctgg B D Dolphin ----------gtccggg B D Cow aaaa---cccatccccg B D Sheep aaaa---cccatccccg B D Horse aaaa---ctcggcccgg B D Chinese pangolin gaaa---cccgttccgg B D Shrew caaa---ccggtcccgg B D Elephant ------ccttgtcctgg B D Guinea pig ================= B D Rhesus ================= B D Hawaiian monk seal ----------------- B D Dog ================= B D Tenrec NNNNNNNNNNNNNNNNN B D Tarsier ================= B D Hedgehog ================= B D Pika ================= B D Zebrafish ================= B D X. tropicalis ================= B D Opossum ================= B D Chicken ================= B D Squirrel ================= B D Pig ================= B D Bushbaby ================= Inserts between block 36 and 37 in window B D Rabbit 4bp Alignment block 37 of 340 in window, 56739097 - 56739097, 1 bps B D Mouse a B D Rat a GCF_003668045 a Beaver a B D Human a B D Chimp a B D Bonobo a B D Gorilla a B D Marmoset a B D Tarsier g B D Malayan flying lemur a B D Dolphin a B D Cow a B D Sheep a B D Horse a B D Chinese pangolin a B D Shrew a B D Elephant a B D Guinea pig = B D Rhesus = B D Hawaiian monk seal - B D Dog = B D Tenrec N B D Hedgehog = B D Pika = B D Zebrafish = B D X. tropicalis = B D Opossum = B D Chicken = B D Squirrel = B D Pig = B D Rabbit = B D Bushbaby = Alignment block 38 of 340 in window, 56739098 - 56739137, 40 bps B D Mouse gctgtcctggaca-ctggctgc-----------ttcccaaggagcttcg-----------gta B D Rat gctgtcctggaca-ctggctgc-----------atcccaaggagcttca-----------gca GCF_003668045 g-----ctcgatt-ctggttgc-ctc-tctgtactcccaatgttcctca-----------gcg Beaver g----ctctgact-caggcggc-ccc-ttgt--gcttcgaaactcttca-----------g-- B D Rabbit -------agcact-ctggcttg-ccc-gtaa--ttcccgcaactcccctacggtccagaggcg B D Pika -------agccct-ccgggttgcccc-ctga--ttccccaaagtccccc-----------tcg B D Human ----cctcggact-ctggctgt-ctt-acaa--tccctgcaactcctcc-----------gag B D Chimp ----cctcggact-ctggctgt-ctt-acaa--tccctgcaactcctcc-----------gag B D Bonobo ----cctcggact-ctggctgt-ctt-acaa--tccctgcaactcctcc-----------gag B D Gorilla ----cctcggact-ctggctgt-ctt-acaa--tccctgcaactcctcc-----------gag B D Rhesus ---------------------------gcaa--tccctgaaactcctcc-----------gag B D Marmoset -----ctcggact-ctggctgt-ctt-gcaa--tccccgcaactcctct-----------gag B D Tarsier -----------------gctgc-ctt-gcaa--tccctgcaactcccca-----------gag B D Malayan flying lemur ----gctcggact-ctggctgc-cctagcga--tctccgcaactcccac-----------gag B D Dolphin ----gctcagact-ctggctgc--tt-tcga--tccccggaa--------------------- B D Cow ----gctcagact-ctggctgc--tt-tcga--tccccgaaa--------------------- B D Sheep ----gctcagact-ctggctgc--tt-tcga--cccccgaaa--------------------- B D Horse ----gctcaggct-cgggctgc---t-ccga--tcctcggaa--------------------- B D Chinese pangolin ----gctcaggctcctagctgc---t-ctcc--attcctgga--------------------- B D Hawaiian monk seal -----------------------------------cctggag--------------------- B D Shrew ----gctccgact-cggcct-----c-caga--tccccggag--------------------- B D Elephant ----tctcggact-ctggctgc-ctc-cgga--gcccagaaactcct---------------- B D Guinea pig =============================================================== B D Dog =============================================================== B D Tenrec NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN B D Hedgehog =============================================================== B D Zebrafish =============================================================== B D X. tropicalis =============================================================== B D Opossum =============================================================== B D Chicken =============================================================== B D Squirrel =============================================================== B D Pig =============================================================== B D Bushbaby =============================================================== Inserts between block 38 and 39 in window B D Human 12bp B D Chimp 12bp B D Bonobo 12bp B D Gorilla 12bp B D Rhesus 12bp B D Marmoset 12bp B D Tarsier 12bp B D Malayan flying lemur 12bp B D Dolphin 22bp B D Cow 23bp B D Sheep 23bp B D Horse 22bp B D Chinese pangolin 22bp B D Hawaiian monk seal 22bp B D Shrew 19bp Alignment block 39 of 340 in window, 56739138 - 56739138, 1 bps B D Mouse g B D Rat a GCF_003668045 g Beaver g B D Guinea pig a B D Rabbit g B D Pika g B D Human g B D Chimp g B D Bonobo g B D Gorilla g B D Rhesus g B D Marmoset g B D Tarsier g B D Bushbaby g B D Malayan flying lemur t B D Dolphin g B D Cow g B D Sheep g B D Horse g B D Chinese pangolin g B D Dog g B D Hawaiian monk seal g B D Shrew g B D Tenrec N B D Hedgehog = B D Zebrafish = B D X. tropicalis = B D Opossum = B D Chicken = B D Elephant - B D Squirrel = B D Pig = Alignment block 40 of 340 in window, 56739139 - 56739189, 51 bps B D Mouse ------ggcatagtgac-----------ct------ggaccttgctt----------gacccagtatgct B D Rat ------ggtgtagtggc-----------ct------gggccttactt----------gaccctgtatact GCF_003668045 ------ggcatagtgg-------------------------------------------cccagtctgct Beaver ------ggtctaggggcgggcacatcatca------gggcctcactg--------gagatccagtctgtt B D Squirrel ------ggcgccgtcc------------tc------tggctttgctg--------ggaatccagtctctt B D Guinea pig ------gacacagtcac-----------ct------gggtcttatgt--------agggtccggtgcatc B D Rabbit ------gccaccgtctc-----------ct------gggcctcgctc---------cggtgcaatctgtt B D Pika ------gacctcgttag-----------ct------aga------------------ggcccaaaccgat B D Human ------ggcaccgtcgc-----------ct------gggcctcgcttggggggg-gggggtc---ctgtc B D Chimp ------ggcaccgtcgc-----------ct------gggcctcgcttgggggggtgggggtc---ctgtc B D Bonobo ------ggcaccgtcgc-----------ct------gggcctcgcttgggggggtgggggtc---ctgtc B D Gorilla ------ggcaccgtcgc-----------ct------gggcctcgcttgggggg--gggggtc---ctgtc B D Rhesus ------ggcaccatcgc-----------ct------ggacctcccttg-------ggggatc---gtgtc B D Marmoset ------ggcaccatcgc-----------ct------gggcctcgcct--------gggggtc---ctgtc B D Tarsier ------agcaccgtcgc-----------ct------gggtctcgctc--------gaggtcccatctgtt B D Bushbaby ------ggcattgtctc-----------tt------gggt-------------------------ctgtt B D Malayan flying lemur ------ggcacagtcgc-----------ct------gggcctcgctc--------ggggtccggtctgtt B D Dolphin ------gccgccgtcgc-----------ct------gggcctcaccc--------tgggtcctgtctttt B D Cow ------gcagtcgttgc-----------ct------gggcctcactc--------tcggtcctgtctttt B D Sheep ------gcagtagttgc-----------ct------gggcctcactc--------ttggtcctgtctttt B D Horse ------gggaccgcagc-----------ct------gggcctctccc--------ggggtcccg--tgtt B D Chinese pangolin ------gccatcgtcgc-----------ct------gggcctcacca--------gagatgctgtctgtt B D Dog ------ggcaccgtcgc-----------ct------gcgcct-gccc--------ggggtcc----tgtc B D Hawaiian monk seal ------ggcaccgtcgc-----------ct------gtgcct-gccc--------ggggtcc----tgtc B D Shrew ------agccccgcacc-----------tttgccgagagcctcgcca--------ggggtcctcggggtt B D Elephant cagggtggtccagaggc-----------tg------acaggtcacct--------agggtgt----tgta B D Tenrec NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN B D Hedgehog ====================================================================== B D Zebrafish ====================================================================== B D X. tropicalis ====================================================================== B D Opossum ====================================================================== B D Chicken ====================================================================== B D Pig ====================================================================== Mouse cctagcag----------g-g------------------------g--------------aca Rat cctagccg----------g-g------------------------g--------------aca GCF_003668045 tctagcgg----------g-g------------------------gtg-ggggtgggggaaca Beaver cctagcag----------g-g------------------------g--------------gca Squirrel cccagcag----------gag------------------------g--------------gca Guinea pig ctcagcag----------g-g------------------------gtgcaaagtgaagcaaca Rabbit cccaacgg----------g-g------------------------a--------------gcg Pika tccaacag----------g-g------------------------a--------------gca Human cccagcag----------g-g------------------------g--------------gca Chimp cccagcag----------g-g------------------------g--------------gca Bonobo cccagcag----------g-g------------------------g--------------gca Gorilla cccagcag----------g-g------------------------g--------------gca Rhesus cccagcag----------g-g------------------------g--------------gca Marmoset cctagcag----------g-g------------------------t--------------gca Tarsier cccagcaaggaatcagttg-g------------------------g--------------aat Bushbaby cccggctg----------g-g------------------------g--------------tca Malayan flying lemur cccaacag----------g-g------------------------gc-------------gca Dolphin tccgacag----------a-g----------------------gag--------------gca Cow cccgacag----------a-g----------------------g-g--------------gca Sheep cccgacag----------a-g----------------------g-g--------------gca Horse gctggcag----------g-g----------------------g-g--------------gcg Chinese pangolin ctcggcag----------g-g----------------------g-g--------------gca Dog cccaggag----------g-a-----------ggggaggaggag-g--------------gca Hawaiian monk seal cccaggag----------g-a------------------------g--------------gca Shrew tccggcag----------g-ggcggggggggtggggaggaggga-g--------------aca Elephant cccagcag----------g-t------------------------------------------ Tenrec NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN Hedgehog =============================================================== Zebrafish =============================================================== X. tropicalis =============================================================== Opossum =============================================================== Chicken =============================================================== Pig =============================================================== Alignment block 41 of 340 in window, 56739190 - 56739316, 127 bps B D Mouse agttgcagagttcggtgcctacatact---ct-gctctaactcccgtgttca----cctcaaccgcgagt B D Rat agttgcagagttcggtgcctaagtatt---tt-gctctaactcctatgttca----ctgcaaccgcgggt GCF_003668045 agtt---gagttcggatcctaagtact---ctccccctaccgcctgtgttca----ctataactgcga-t Beaver a----------tcaactcc----catt---ct-ccactaccagctctgctca----ttgtaagtgcgact B D Squirrel a-------------------------t---ct-tctataccagctctgctca----tcctaactgccact B D Guinea pig a--------------------------------cctctaa---atctgctca----tcataactgcaaca B D Rabbit agttggaggcat------------------ct-cctcctccagttccgctgg----tcttaaggacaact B D Pika agttggaggcatccactccttaatatttccct-ccttcttcagctctgcttg----tc-----accgaac B D Human agttggaggaatcagctccttaatatt---tt----ctgctagctctgcttg----tcataactgcaact B D Chimp agttggaggaatcagctccttaatatt---tt----ctgctagctctgcttg----tcataactgcaact B D Bonobo agttggaggaatcagctccttaatatt---tt----ctgctagctctgcttg----tcataactgcaact B D Gorilla agttggaggaatcagctccttaatatt---tt----ctgctagctctgcttg----tcataactgcaact B D Rhesus agttgcaggaatcagctccttaatatt---tt----ctgctagctctgcctg----tcataactgcaact B D Marmoset agttggaggaatcagctccttaatatt---tt----ctgctagctccgctagtcattcattactgcaact B D Tarsier agttggaggaatcagctctttctttcc---ct----ctgccccctccgcttg----tcataacggcaact B D Bushbaby atttggagaaatcagctccttaatatt---ct----ctgcccgctctgcttg----tcataactataatt B D Malayan flying lemur agttggaagaatcaactccttaatatt---ct----ctgccagttctgcccg----tcgtaactgcaact B D Pig atttggaggaatctg---cttaatatt---ct-cctcggccacctctagtca----ttctaaatgcgtct B D Dolphin agctggaggaatctgccccttaatatt---ct-cctcggccaactctagtct----tcctaaaagcgact B D Cow agttggaggaatctgctccttaacatt---ct-cgtcgg-caactctagtct----ccctaaaagcgcct B D Sheep agttggaggaatct-cttcttaacatt---ct-tgtcgg-caactctagtct----ccctgaaagcgcct B D Horse agttggaggaatctgcttcttaatagt---ct-cctttgccaactctgctct----tcaaaaccgccatt B D Chinese pangolin agctggaagaatctgctccttactagt---ct-cctctgcaaactatgctct----tcacaaaagcaaat B D Dog agttggaagaaactgccccttaa---t---ct-tctccgccaactctgccct----tcataaatgcaact B D Hawaiian monk seal agttgttagaatctgccccttaatgtt---ct-tctctgccaactctgctct----ccataaatgcaacc B D Shrew cattcgaagcctctgcgccttaaaaag---cc-cctctgccaactctgctct----tcctcagtgcaacc B D Elephant ---tggaagaatcggatcaatactatt---ct-cctctgccagctctgctcg----tcagaactggtact B D Tenrec NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN B D Hedgehog ====================================================================== B D Zebrafish ====================================================================== B D X. tropicalis ====================================================================== B D Opossum ====================================================================== B D Chicken ====================================================================== Mouse agaa--------------------------------------aaa---gagacccttc---------cat Rat agaa--------------------------------------aaaa-agagacccttc---------cat GCF_003668045 aggg--------------------------------------aaa---gactccctcc---------cat Beaver gaaaactctcccgcgcgcgcgcgcacacacacacacacacacaca---cacacacaca---------cac Squirrel gaga--------------------------------------acag-gaggactcttc------------ Guinea pig gaga--------------------------------------aca----ggacacaca---------cac Rabbit ggga--------------------------------------atag-gaggacccctctccca--cgcat Pika ttgt--------------------------------------ccag-gaggactcccgtacca--cgtac Human cgga--------------------------------------atag-aacaacctctctcccg--tgcat Chimp cgga--------------------------------------atag-aacaacctctctcccg--tgcat Bonobo cgga--------------------------------------atag-aacaacctctctcccg--tgcat Gorilla cgga--------------------------------------atag-aacaac--ctctccca--tgcat Rhesus cgga--------------------------------------atag-aacaacctctctcccg--cgcat Marmoset cgga--------------------------------------atag-aacagcctctctccaggacacac Tarsier ggga--------------------------------------acag-aatgacccctctctga--tacaa Bushbaby ggga--------------------------------------acagcaagaccccctctttggggggggt Malayan flying lemur ggga--------------------------------------acag-aaggacccctctcggg--cgcat Pig ggga--------------------------------------acag-caagacccctcgcgcg--cgcat Dolphin ggaa--------------------------------------acag-caggacccctctcccg--cgcat Cow gaga--------------------------------------gtag-caggacccctctcccg--cgcat Sheep gaga--------------------------------------atag-caggacccctctcccg--cacat Horse ggga--------------------------------------acag-cagga-ccctctcccg--tgcat Chinese pangolin gaga--------------------------------------acag-cagaacccctctccca--cgctt Dog gcga--------------------------------------acgg-caggacctctcgcgcg--cg--- Hawaiian monk seal ggga--------------------------------------gcaa-caggacccttctcacg--cgcac Shrew gaag--------------------------------------agaa-caaga-ccctctcccg--cgcgc Elephant gaga--------------------------------------acag-caggacccc-ctcccg--cgcac Tenrec NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN Hedgehog ====================================================================== Zebrafish ====================================================================== X. tropicalis ====================================================================== Opossum ====================================================================== Chicken ====================================================================== Mouse tct----cgcg-cctccc------------------cctact--ttc-----------tcttccacggtc Rat tcc----cgct-cctctctct------------cgccctacc--ttc-----------ttttccgctggc GCF_003668045 cca----cgca-cctctgtct------------caccctacc--ttc-----------ccttctgcggcc Beaver aca----cacg-cctccccct------------cgccccact--ctg-----------gcatccgcaatc Squirrel tcc----cgcc-acatgcata------------cactttact--ctt-----------ccactcgcagta Guinea pig ctt----cgc----------------------------------ctt-----------ccatctgctgtc Rabbit aca----cacg-cccccctct------------agcctttcc--ctc-----------ccctgtacagtc Pika acc----cacg--ccccctct------------tgccttgcc--ctc-----------tgctg--cagtc Human acg----cacc-cccaactct------------cgccctatc--ctc-----------ccatccacagtc Chimp acg----cacc-cccaactct------------cgccctatc--ctc-----------ccatccacagtc Bonobo acg----cacc-cccaactct------------cgccctatc--ctc-----------ccatccacagtc Gorilla acg----cacc-cccaactct------------cgccctatc--ctc-----------ccatccacagtc Rhesus acg----cacc-ccctactct------------cgccctgtc--ctc-----------ccatccgcagtc Marmoset aca----caca-cctcactct------------cgccctatc--ctc-----------ccgtccgcagtc Tarsier gcgagcacccc-tctcgctct------------cgcctctcc--ctc-----------ccatccgcagtc Bushbaby ctg---------------tct------------cgccttccc--ctc-----------ccatccacagtc Malayan flying lemur gca----cacg-cccccctcg------------cgccttaccctctc-----------tcagccgcagtc Pig aca----caag---cccctctctggccatacaatagcacttc--ccc----------------------- Dolphin aca----cacg---cccctctctcgctataccaccccccgcc--ccccgccccccgtcccgtctgcagtc Cow aca----caca---cccctct------------caacccacc--ttcgcgctcccgtcccatctgcggtc Sheep aca----cacg---cccctct------------caacccacc--ctcgcgctcccgtcccatctgcggtc Horse cca----cacg--ccccccct------------cgctgtacc--ctc-----------at-----ccgcc Chinese pangolin gca----catgctccctctct------------cgctttatc--ccc-----------gtatctgcagtc Dog -----------------------------------------------------------gggacgtagtc Hawaiian monk seal acg----cacg--ccctctct------------cattctcgc--ccc------------cagccgcagtc Shrew acg----ccct---gctctaa------------cgctgcccc--ctc-----------gcgtgagcaatc Elephant aca----cacg-cctcccttc------------tgccatacc--ctc----------cccatccttagtg Tenrec NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN Hedgehog ====================================================================== Zebrafish ====================================================================== X. tropicalis ====================================================================== Opossum ====================================================================== Chicken ====================================================================== Mouse -gcagtcgacct--------------------- Rat -gccatcgacct--------------------- GCF_003668045 -accatggatct--------------------- Beaver -accacggacct--------------------- Squirrel -atccctggcct--------------------- Guinea pig tttcaccagcct--------------------- Rabbit -atcactgacct--------------------- Pika -agcgctgacct--------------------- Human -atcactgacct--------------------- Chimp -atcactgacct--------------------- Bonobo -atcactgacct--------------------- Gorilla -atcactgacct--------------------- Rhesus -atcactgacct--------------------- Marmoset -atcacagacct--------------------- Tarsier -atcgccgacag--------------------- Bushbaby -atcattgacca--------------------- Malayan flying lemur -ataactgacct--------------------- Pig -----ctgacct--------------------- Dolphin -gtagctgacct--------------------- Cow -gtcgctgacct--------------------- Sheep -gtcgctgacct--------------------- Horse -gtcgctgacct--------------------- Chinese pangolin -gccgccgatct--------------------- Dog -gtagctgacct--------------------- Hawaiian monk seal -gtagctgacct--------------------- Shrew -gttgctgacct--------------------- Elephant -gtcgcagacctgcagaccccgcgaagggaacg Tenrec NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN Hedgehog ================================= Zebrafish ================================= X. tropicalis ================================= Opossum ================================= Chicken ================================= Inserts between block 41 and 42 in window B D Pig 6bp B D Dolphin 6bp B D Cow 6bp B D Sheep 6bp B D Horse 6bp B D Chinese pangolin 6bp B D Dog 112bp B D Hawaiian monk seal 6bp B D Shrew 6bp Alignment block 42 of 340 in window, 56739317 - 56739393, 77 bps B D Mouse ccagggacac-----agacgctg------agta-ctca-------------------------------c B D Rat acacagacgc-----agacgccg------gttc-ttaa----------------------------gaat GCF_003668045 gcacgcgcat-----agaagctgtccttaagtg-ctgg-------------------------------c Beaver gcacataagg-----agcagctg------gcct-ccaga-------------------------cagatt B D Squirrel gcgtccgc---------aagctg------acat-ccggg-------------------------caggtt B D Guinea pig gcatgccctg-----ggaatctg------gtgt-cagaa-------------------------caggtt B D Rabbit gcagaccccg-----agcaacaa------gcac-tcagaggagccgcagagccggacggcggtccgggtt B D Pika gcagacccgtgcagcagcagcgg------gcgc-tcgcagggaccgccgagccggccgctggccggggct B D Human gtagacccgg-----aggagcag------gctt-c-----------------cgggggtcggtccaggtt B D Chimp gtagacccgg-----aggagcag------gctt-c-----------------cgggcgtcggtccaggtt B D Bonobo gtagacccgg-----aggagcag------gctt-c-----------------cgggcgtcggtccaggtt B D Gorilla gtagacccgg-----aggagcag------gctt-c-----------------cgggcgtcggtccaggtt B D Rhesus gtacacccgc-----aggagcag------gctt-c-----------------ctggagtcggtccaggtt B D Marmoset gtagacccgg-----aggagcag------cctt-cccgcggagcagcttag-ccggcgtcggtctgggtt B D Tarsier acagaccccg-----agaagcag------gctt-cccgcagagttgcccagtcgggcgttggtccaggtt B D Bushbaby gcagaccctg-----ag-agcaa------gctc-cctaagaaacaactcatccgggctgacatccaggtt B D Malayan flying lemur gtggaccc-g-----agaagctg------gcac-ccggcggagcagctcagctcggcgtcggtccaggtt B D Pig ------cgag-----ggaagcag------acac-ccagcgcagcggtcc---aaggcgcgagtccggttt B D Dolphin ------cgcg-----ggaagcag------gcgc-ccggcggagcagccc---aggacatcgctcagcgct B D Cow ------c-cg-----ggaagcag------gcgc-gaggcggagcctccc---gggacgtcggtccgtgtt B D Sheep ------c-tg-----ggaagcgg------gggc-gaggcggagccgccc---gggacgtcggtccgggtt B D Horse ------ccc------ggaagcag------gcgc-ccggcggagggaccc---ggggcgtcggccaggacc B D Chinese pangolin ------cccg-----ggaagcag------gcgt-cccacggagcagcta---ggggcgtcggtcagggtt B D Hawaiian monk seal ------cccg-----ggtagcag-----------------------ccc---agggcgtcggtcagggtc B D Shrew ------cccg-----gggaggag------gggtggtcccagagtcctgc---ggagcggcgtgcagaacg B D Elephant -----ccggg-----tggagcag---------c-c-----------------cagctggggatccaggtt B D Dog ====================================================================== B D Tenrec NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN B D Hedgehog ====================================================================== B D Zebrafish ====================================================================== B D X. tropicalis ====================================================================== B D Opossum ====================================================================== B D Chicken ====================================================================== Mouse cgagatcaagt--------ga-g-------------tgctcacacacagcctagagtgctgccttccgat Rat tgagatcaaat--------ga-ggcctctcca-ag-tgctcacactcaccctagagtgctgccttccgat GCF_003668045 tgaggtcaaat--------gatggcttctgga-gt-cgctca----cagcctggactgctgccttgcgat Beaver gggaatcaagg--------ga-gatttccccgtgc-ccctca----caatctgtagtgcttccttccaac Squirrel ggggatcggga--------ca-ggtctccccgagt-cccgca----caatctacagcaccccttcatgat Guinea pig agggacccggc---------a-gaccttcctgtgt-cccaca----gggtctgcagc-ccgggttcctac Rabbit gggggtcgagg--------gc-ccgctcccagcct-cccgca----cagcccccagcgcccgggtccgac Pika gggggccgagggagagagtga-acgctcactgcctgagcaca----cagcctgcagcgccccagttaggc Human ggggatacagg--------ga-ggggtcctcgcgt-tccgca----caacctgtagtgcttgggtctgac Chimp ggggatacagg--------ga-ggggtcctcgcgt-tccaca----caacctgtagtgcttgggtctgac Bonobo ggggatacagg--------ga-ggggtcctcgcgt-tccaca----caacctgtagtgcttgggtctgac Gorilla ggggatacagg--------ga-ggggtccttgcgt-tccgta----caacctgtagtgcttgggtctgac Rhesus ggggatacagg--------ga-ggagtccccgcgt-tccgca----caacctgcagtgcttgggtct--- Marmoset ggggattcagg--------ga-ggggtcctcgcgt-tccgca----caacctgcagtgcttgggtctgac Tarsier gaggatcgaag--------ga-gggctccccgcgt-tccgca----cagacagcagcgcctgggtctgaa Bushbaby ggggatccaga--------ga-gagctccccgcgt-cccgcc----cagcctgtggcgcttgggtctgac Malayan flying lemur gggggtcgagg--------ac-cgactcccctcat-cccgta----cagcgtgcagtgcccggttctgac Pig agagagct-----------gc-gggcttcccactt-tctgta----cagcctgttgcgcccagatccgac Dolphin ggagggc------------gg-aggctccccactc-cctgca----cagcctgttgctcccgggtccgac Cow ggagagccg----------gg-ggggtccccactc-cccgca----cagcctgtggcgcctgggtc---- Sheep ggagagcc-----------gg-ggggtccgcactc-cccgca----cagcctgtggcgcctgggtc---- Horse gcagatccagg-------cta-gggctccccgct--cctgcg----ccgccggtagcgcccg-gtgcgac Chinese pangolin ggagagctggg--------gg-cggctcatcgctc-cctgcg----tggcctgtagcactggagtccaac Hawaiian monk seal acagagctggg--------ga-agagttcccctg--cctcaa----cagcctgtagcgccggggtctcac Shrew aacgcgc------------gg-------ccagctc-cttgca----cagccttgagcgcccggggccacc Elephant ggagagcgagc--------ag-agg------gcgc-cccgca----cagcctgcagcacgg--------- Dog ====================================================================== Tenrec NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN Hedgehog ====================================================================== Zebrafish ====================================================================== X. tropicalis ====================================================================== Opossum ====================================================================== Chicken ====================================================================== Mouse gg Rat gg GCF_003668045 g- Beaver ct Squirrel ct Guinea pig ct Rabbit tt Pika at Human tt Chimp tt Bonobo tt Gorilla tt Rhesus -- Marmoset tt Tarsier ct Bushbaby ct Malayan flying lemur ct Pig ct Dolphin ct Cow -- Sheep -- Horse at Chinese pangolin ct Hawaiian monk seal ct Shrew cg Elephant -- Dog == Tenrec NN Hedgehog == Zebrafish == X. tropicalis == Opossum == Chicken == Inserts between block 42 and 43 in window B D Sheep 2bp B D Shrew 3bp Alignment block 43 of 340 in window, 56739394 - 56739394, 1 bps B D Mouse c B D Rat c Beaver t B D Squirrel c B D Guinea pig g B D Rabbit c B D Pika c B D Human c B D Chimp c B D Bonobo c B D Gorilla c B D Marmoset c B D Tarsier g B D Bushbaby t B D Malayan flying lemur c B D Pig t B D Dolphin c B D Horse t B D Chinese pangolin c B D Hawaiian monk seal t B D Hedgehog a B D Shrew c B D Sheep = B D Rhesus - B D Dog = B D Tenrec N B D Zebrafish = B D X. tropicalis = B D Cow - B D Opossum = B D Chicken = B D Elephant - GCF_003668045 - Inserts between block 43 and 44 in window B D Pig 11bp B D Dolphin 11bp B D Horse 11bp B D Chinese pangolin 10bp B D Hawaiian monk seal 15bp B D Hedgehog 10bp B D Shrew 7bp Alignment block 44 of 340 in window, 56739395 - 56739417, 23 bps B D Mouse ggcggc-------gactgcccg---g-atactct B D Rat ggcagc----------tgcccg---g-atgcttc GCF_003668045 ------------------------------ctta Beaver ggcagc------------------------cctc B D Squirrel agtagctcttgggtgctgtctgcc-a-gtctctt B D Guinea pig ggtagtcctcgggtgccctcag---acatccact B D Rabbit tgcagacctggattgctgtctgcc-g-gccgttc B D Pika tgcagacccgggtagcgttcttcc-a-gcccttc B D Human ggcagccctcgggtacagtctgcc-gggcta--- B D Chimp ggcagccctcgggtacagtctgcc-gggcta--- B D Bonobo ggcagccctcgggtacagtctgcc-gggcta--- B D Gorilla ggcagccctcgggtacagtcagcc-gggcta--- B D Rhesus ----------gggtacagtctgcc-cggcta--- B D Marmoset agcagccctcgggtacagtctacc-gggcta--- B D Tarsier ggcaactctggggtgctgtctgct-gggccactt B D Bushbaby ggcagccctctggtgtcttctgcc-tagccactc B D Malayan flying lemur ggcagccctcgggtgcagtctgcc-gggccactc B D Pig -----------ggagccgtctgcc-aggccacac B D Dolphin -----------ggcgccgtctgcc-gggtcgcgc B D Cow ---------------------------------c B D Sheep -----------ggcgcggtctgccagggccacgc B D Horse -----------ggcgccgtgtgcc-aggccgcgc B D Chinese pangolin -----------ggcacggtct-cc-aggccgctc B D Dog -----------ggcgccgtccgcc-cggttgcgc B D Hawaiian monk seal -----------ggcgccgtctgcc-gggctgcgc B D Hedgehog -----------gaggact-------gggcaggcc B D Shrew -----------gacgccttctgta-ggtccgccc B D Elephant --------------------ggtc-aggtcacgc B D Tenrec NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN B D Zebrafish ================================== B D X. tropicalis ================================== B D Opossum ================================== B D Chicken ================================== Inserts between block 44 and 45 in window B D Rat 4bp Alignment block 45 of 340 in window, 56739418 - 56739533, 116 bps B D Mouse gtgagccgccgtg-ggaagagctagattccacttcctgc---gcatct--ctcc-tcagacctcgctcgt B D Rat gtgagcaacggta-ggaagagctagattccacttcctgc---gcatct--ctcc-tcagacctcgctggt GCF_003668045 gcgcgaggccttg-ggaagagctagattccacttcctgc---gcgtct-----c-ccagccctcgctggt Beaver gagtg---tcatt-tgcagggcca---------ttctcc---gtatct--gtcc-tcagatcccgtt-at B D Squirrel gagggcgaccttg-gaaggagctagattccccgt-ctcc---atacct--ctcc-tcagatcccgctaga B D Guinea pig gagggcggccttg-gaaggcgcctgattccagcacct----------t--ctcc-gcagaccctgctagt B D Rabbit gaaggcggcctcg-gaggatgatggtttcttgtccctttcctgcattt--ctcc-tcagatcccactggt B D Pika caagttggccttgttaaaataccagtttctcgtcccttctcggtatctcactcc-tcagaccccaccggt B D Human ------------------------gattcccgttgcttctccgcgtct--ctcc-gcgggccgctctagc B D Chimp ------------------------gattcccgttgcttctccgcgtct--ctcc-gccggccgctctagc B D Bonobo ------------------------gattcccgttgcttctccgcgtct--ctcc-gccggccgctctagc B D Gorilla ------------------------gattcccgttgcttctccgcgtct--ctcc-gccggccgctgtagc B D Rhesus ------------------------gattcctgttgcttctccgcgtct--ctct-gccggccgctctagt B D Marmoset ------------------------gattcctgttgcttctccgcgtct--ctcc-gccagccgctctagt B D Tarsier gagggcggcttcg-gaaacagctcgattcccgttccttcttcgcgttt--ctccttccgactgctctagt B D Bushbaby gagggcagcctca-aaagaagctagattcctgtttcttctccgtgtct--ctcc-tcagaccctgctaat B D Malayan flying lemur gaaggcggcctcg-gaaggagctagattcctgttccat---cgcatct--ctcc-tcagacccagctagt B D Pig gagggcggcctcg-caaggagctaga----------tcctccgcatct--ctcc-tcagaccccgcgggt B D Dolphin tggggcggcctca-gaaggagctagactcctgttccttctccgaacct--ctcc-tcagaccccgctgct B D Cow gggggcggcctct-gaaggagccagattccagttccttccccgcatct--cttc-ccagaccccgctggt B D Sheep gggggcggcctcg-gaaggatccagattccagttccttccccgcatct--cttc-ccagacccggctggt B D Horse gaggg-ggcctcg-gaaggagccggattcctgttctttctcggctcct--ctcc-ttggac--------- B D Chinese pangolin gaaggcggcctcg-gaaagcgctggactgcagttcctcctcggcctct--ctcc-tcagatcgcactaca B D Dog gagggcggcctcg-gaaagagctgga-tcctgttcctccgcgccgtct--ctcc-ttggatcccgctagc B D Hawaiian monk seal gagggcggcctcg-gaaagagctagattcctgttccttctggttgtct--ctcc-tcagatcccgctagt B D Hedgehog g---------------------tcgatcccagagtcttcccggtttct--ctcc-gcagacccggctagt B D Shrew g-----------------gagctcgattacggatcctgttccacgtct--ctcc-ttagaacacgccggt B D Elephant gcaggaggcctcg-gaaggggctagattcttattccttcccggcatcg--cctc-tcagtccgcgctggg B D Tenrec gtgcgaggcctcg-gaaggggctggattttgaacctttctccgtagct--tgcc-tctgaccgcccgggg B D Zebrafish ====================================================================== B D X. tropicalis ====================================================================== B D Opossum ====================================================================== B D Chicken ====================================================================== Mouse g--cccaaaggga----cttggtgcac-----t-gcaagtggcgggcccgtggcatt--gggaccac Rat g--cccaaaggga----cccggtgcac-----c-gcaagtggcaggcccgtggcact--gggaccac GCF_003668045 g--ccgaaaggga----cgcgatgcac-----c-acaggtggtgagcccatgacact--gggactac Beaver a--ccgggagggg----c-----gcgc-----c-acaggtgac-ggcccatgactgt--gggaccac Squirrel g--ccaggagggg----c-----gcgc-----c-acaggtgat-ggcccgtgacact--gggaccgc Guinea pig g--ctgggagggg----t-----gcac-----c-acagatcacagccccctgacact---ggaccac Rabbit ---ccgggagggt----c-----gcac-----t-gcaggtgacggc----tcgcgcccctggagcac Pika ---ctgggaagaa----g-----gcgc-----c-acaggggaccacgtcgtagcactcgcaacacac Human g--ccgggaaggg----g-----gcgc-----c-gcaggtgac-tgcccgcggcact--gggacggc Chimp g--ccgggaaggg----g-----gcgc-----c-gcaggtgac-tgcccgcggcact--gggacggc Bonobo g--ccgggaaggg----g-----gcgc-----c-gcaggtgac-tgcccgcggcact--gggacggc Gorilla g--ccgggaaggg----g-----gcac-----c-gcaggtgac-tgcccgcggcact--gggacggc Rhesus g--ccgggaaggg----g-----gcgc-----c-gcaggtgac-tgcccgcggcact--gggacggc Marmoset g--cctggaaggg----g-----gcgc-----a-gcaggtgac-tgcccgcggcact--gggagggc Tarsier g--tcgggacggg----g-----acgc-----c-gcaggtgac-cgcccgcggcact--gagaccgc Bushbaby a--ttgaaggggg----g-----gagc-------gcaggtgag-cgcccgcagcact--aggaccgc Malayan flying lemur g--cgggggtggggggag-----ggac-----t-gcaggtgac-cgtccgcagcact--gggaccgc Pig g--cccggagtgg----a-----gcgc-----c-gcaggtgac-tgccagtggcacc--aggaccgc Dolphin g--ccgggagggg----a-----gggcgggggc-gcaggtgac-cgcccgcagcact--gggaccgc Cow g--ccaggagggg----c-----acgc-----c-gcaggtgat-cacccgaagcact--gggaccgc Sheep g--ccaggagagg----c-----acgc-----c-gcaggtgat-cgcccgaagcact--gggaccgc Horse ---ccgggagggg----g-----gcgc-----c-gcaggtgac-cgcccgcggccct--gggaccgc Chinese pangolin gagccgggaggag----g-----gcgc-----c-acaggtgat-cgccagcggcgct--gggaccgc Dog g--ccgagagggg----g-----gc-c-----c-acaggttac-tgtccgcggcacc--gcgaccgc Hawaiian monk seal g--ccgagagggg----g-----gcgc-----c-acaggttac-cgtccgcggcact--gcgaccgc Hedgehog g--ccgggagggg----g-----tgcc-----tagcagatgtt-cgcctgctacact--ggggccgc Shrew g--tcagaagggg----a-----acgc-----t-gcaggtgac-ggtccgcggcaat--gggaccgc Elephant g--ccagaagggg----g-----acgc-----c-gcaggtgat-tgcccgaggcact--gggaccgc Tenrec g--ccaggagggg----a-----ccgc-----c-gcaggtgac-cgccctcggccct--gagaccgc Zebrafish =================================================================== X. tropicalis =================================================================== Opossum =================================================================== Chicken =================================================================== Alignment block 46 of 340 in window, 56739534 - 56739680, 147 bps B D Mouse tgac-agatttatgaagacttta---caagcatcgagcctgggtcgttggaggcag-ggt-tgagttcaa B D Rat tgac-agatttatgaagacttta---caagcatctagcctgggccgttggaggcag-cgt-tgagttcaa GCF_003668045 tgac-agatttatgaagacttta---caagcttctagcctcggtcgttgtgggcag-cgt-tgcgtg-ag Beaver tgac-ggatttatggagacttc----ccagcttttggcctgagtcttccgggatag-ggt-ggagtc--- B D Squirrel tgac-tgatttatggagacttta---caa-catctggcctgggtccgcgggggcag-ggc-tgagtc--- B D Guinea pig cgac-agatttatggagacttta---cag-catctggtctgg---------gaaag-ggt-ggagtccac B D Rabbit tgac-agatttatggaggcttga---cag-catctagcctgggtccgcgg-ggcag-ggc-agactc--- B D Pika tgtcaagattaatgaaggcttaa---ctg-cacctggcctgggtccgctg-ggctg------cacgc--- B D Human tgac-agatttatggagacttca---cag-catctggctggggtccgcgagggcag-ggc-ggagtc--- B D Chimp tgac-agatttatggagacttca---cag-catctggctggggtccgcgagggca--ggc-ggagtc--- B D Bonobo tgac-agatttatggagacttca---cag-catctggctggggtccgcgagggca--ggc-ggagtc--- B D Gorilla tgac-agatttatggagacttca---cag-catctggctggggtccgcgagggcag-ggc-ggagtc--- B D Rhesus tgac-agatttatggagacttca---cag-catctgactggggtccgcgagggcag-ggc-ggagtc--- B D Marmoset tgac-agatttatggagacttca---cag-catctggctggggtcctcgagggcag-ggc-ggagtc--- B D Tarsier tgac-agatttatggagacttta---cag-catctggcctaggtccgcgggggcag-ggc-ggagtc--- B D Bushbaby tgac-agatttatgtagacttta---cag-catctggcctgggtctgccggggcag-ggc-ggagtc--- B D Tree shrew tgac-agatttatggagacttta---cag-cacctggcctgagtctgtggggactg-agc-agagtc--- B D Malayan flying lemur tgac-agatttatggagacatta---cag-catctggcctgggtccgcgggg-cag-ggt-ggagcc--- B D Pig tgac-agatttatgaaaacttta---cag-catctggcctgggcccgc-ggggcag-ggcaggagtc--- B D Dolphin tgac-agatttatgaagacttta---cag-catctggcctgggcccgcaggggcag-ggaaggagtc--- B D Cow tgac-agatttatgaagatttta---cgg-catctggccgaggcccgcaagggcag-ggaaggagtc--- B D Sheep tgac-agatttatgaagatttta---cgg-catctggccggggcccgcaagggcag-ggaaggagtc--- B D Horse tgac-agatttatgaagact------tag-catctggcctgggcccgcaggggcag-ggcaggagtc--- B D Chinese pangolin tgac-agatttatgaagactgtacagcag-catctggcttgggcccgcaggggcag-ggcaagagtc--- B D Dog tgac-aggtttatgaagacttta---caa-catctggcctgggcctgcagtgg-ag-ggcaggagcc--- B D Hawaiian monk seal tgac-agatttatgaagacttta---cag-catctggcctgggcccgcagtggcag-ggcaggagtc--- B D Hedgehog taac---acttgtaaaaactttg---ccg-tctctgtcctgggccagaaggagaga-ggcaggagct--- B D Shrew tgac-agatttatgaagaattta---cag-catctggcttgggccctgtggggacaggggaggcgtc--- B D Elephant tgac-agatttatggagacttaa---cag-catctggcctg----------ggcag-ggctcgagtc--- B D Tenrec tgac-agattgatggaggctgaa---cag-catctggctgg----------ggcag-ggcgctgggc--- B D Zebrafish ====================================================================== B D X. tropicalis ====================================================================== B D Opossum ====================================================================== B D Chicken ====================================================================== Mouse cagaggagga----g--aag---ccctg-gagataaaactcc-----g----cagcactgtgcgggccta Rat cagcagagga----g--aag---ctctg-ggtataaagctcc-----g----cagcggtgtgcgggccta GCF_003668045 cagaggagga----g--aag---ccctt-gagataaagctccgca-gg----cagcggtgtgagggccta Beaver cagtggagga----g--aag---agctgcggtctaaagccacgca-aa----ccccaagccgcgggcc-a Squirrel cagccgagaa----a--aag---cactgagggctaaagcttc------------cccacctgtaagcc-- Guinea pig cagaggagaa----g--cat---gacag-aagctaaaactccccc-ag----ccttatcc--ctggccca Rabbit caggcgagga----a--gag---agctgtgggttaaaactccccc-ag----aagcatgcccccggccca Pika tgggtggggg----c--gggggtagccgcggg-------------------------------------- Human cggtcgatcc----g--a-----tgctggggtctaaagcttcccc-ag----ccacacgcc-tgggccga Chimp cggtcgatcc----g--a-----tgctggggtctaaagcttcccc-ag----ccacacgcc-tgggccaa Bonobo cggtcgatcc----g--a-----cgctggggtctaaagcttcccc-ag----ccacacgcc-tgggccaa Gorilla cggccgatcc----g--a-----tgctggggtctaaagcttcccc-ag----ccacacgcc-tgggccga Rhesus cggtcgatccggt-g--g-----tgctggggtctaaagcttcccc-ag----ccacacgcc-tgggccaa Marmoset cagccgagcc----g--g-----tggtagggattaaaacttcccc-ag----ccgcacgcc-taggccga Tarsier cagccgagga----ggag-----tgctgagg-ctgaatcttcccc------------------------a Bushbaby cagaaagcct----g----------ctgcgggctaaagtttcccc-ag----actcacgcc--ggtccca Tree shrew cagcagagga----g--gt----tgcaacgggtaa-agcttcccc-ta----cagcatgtc-ccgacctc Malayan flying lemur cagctgagga----g--gcg---cgctgcggaccatagct--ccc-ag----ccgcacgcc-ccagccca Pig cgaccaaaaa----g--gtg---cactgcgagct-aaaattcccc-ag----ccgcgtgcc-tgagcctg Dolphin cagccaaaga----g--gcg---caaggcaggct-aaagttcccc-ag----ccgagaccc-cgaacccg Cow cagaaaaagg----g--gcg---c-------gct--aagttcccc-ag----ccgcgcgcc-gggacccg Sheep cagccaaagg----g--gcg---c-------gct--aaggccccc-cg----c----------------- Horse ctgccagaga----g--gcg---ggcggcggctc-cagctcccgc-ag----ccgcgtgcc-cg-gcctg Chinese pangolin caggcaaaga----g--acg---cgctgcgggct-aaagtttcgcgag----gcgcgtgcc-cgaaccga Dog tagcctaa-g----a--gcg---cgctgcgggct-aagttacccc-ag----ccgcgcacc-cggggcga Hawaiian monk seal caacccaagg----g--gtg---cgctgcgagctaaagttccccc-ag----ccgcgtgct-cgggccga Hedgehog ccgccaaaga----g--gca---cacagagggataaagcttactc-cagcccccaccacct-ccagcgtg Shrew cagccaaaga----g--gca---ctctgtgggcgaaagtttcctt-ag--ccccattcctc-caggccca Elephant cagcggagga----a--gcg---cgctgcggactgaagctccctc-ag----ccgcgcgcc-cgggccga Tenrec cagaggcgcaggcgg--gcg---cgctgcggaccgaagctccccc--g----ccgctcgcg-caggcctg Zebrafish ====================================================================== X. tropicalis ====================================================================== Opossum ====================================================================== Chicken ====================================================================== Mouse gctgcccctgcatt--------tctgg---gc--------ttggc-ttccac Rat gctgcccctgcatc--------tctgg---gc--------ttggc-ttccac GCF_003668045 actgcccctgcatc--------tctgg---gt--------ttgac-ttccac Beaver cccaaccctggagt--------tctgg---tc--------ctgct-cctcgc Squirrel -caggcccagccgt--------cctgg---gc--------ccggctttccgc Guinea pig gatgcccatggggt--------cctga---gc--------ccggcaccctgc Rabbit gccactcctggagt-------cccggg---gc--------ctggcatcccat Pika -----tcctggctc-------ccctcg---gg--------tagacat--cac Human gtcgcccccagagt-------ccccgg---cc--------cctgctcccctt Chimp gtcgcccccagagt-------ccccgg---cc--------cctgctcccctt Bonobo gtcgcccccagagt-------ccccgg---cc--------cctgctcccctt Gorilla gtcgcccccagagt-------ccccgg---cc--------cctgctcccctt Rhesus gctgcacccagagt-------ccccgg---cc--------catgctcccctc Marmoset gccgcccccggagt-------ccccgg---ct--------cctgctcccctc Tarsier gtcgcccctggagt-------cccgga---cc--------ccggtttccctt Bushbaby gctggcggtagaat-------ccc-ag---cc--------ccggctcccctc Tree shrew gaagtccccggagc-------tcccaaaattc--------ccaactcccctc Malayan flying lemur gccgctcctggagt-------tcccgg---cc--------ccggcttccctc Pig gcagcctcgggaatc------cccggg---cg--------ccg-ctcccc-- Dolphin gccgcctctggggt-------cccggg---cc--------ccgtgtcccc-- Cow gccgtctctgaagtc------cccggg---cc--------ccgactcccc-- Sheep -ccgtctctggagtc------cccggg---cc--------ccgactcccc-- Horse gccgcctccggag--------ccccgg---cc----------ggctgtcc-- Chinese pangolin gccgcctctagagt-------ctccgg---cc--------ttggcacccc-- Dog gccgcccctggagt-------cccggg---cc--------ctggcttccc-- Hawaiian monk seal gctgaccctgcagt-------ccccgg---cc--------ctggctcccc-- Hedgehog gcgccggctgagttcccaccgcacatg---ctcctgcaggctgagccc---- Shrew gctgccgctggagtc------cacggg---cc--------ctgactccct-- Elephant gctgcccctggagt-------ctgggg---cc--------ctggccccgcg- Tenrec gccgccccgggagtc------ctgggg---cc--------gcggctcccct- Zebrafish ==================================================== X. tropicalis ==================================================== Opossum ==================================================== Chicken ==================================================== Inserts between block 46 and 47 in window B D Pig 6bp B D Dolphin 12bp B D Cow 12bp B D Sheep 12bp B D Horse 11bp B D Chinese pangolin 11bp B D Dog 12bp B D Hawaiian monk seal 12bp B D Shrew 65bp Alignment block 47 of 340 in window, 56739681 - 56739721, 41 bps B D Mouse ag----------------------------------tgggctgc---cc---ggtgccaagtgtgtaga- B D Rat ag----------------------------------cgggctgc---cc---tgtgccaagtgtgtaga- GCF_003668045 tg----------------------------------gaggctgc---cc---agtgccaagtgtgtagg- Beaver tggcggatgtatat--------------------ccgtggccga---cc---tgtgccgagcgcgtgga- B D Squirrel cagcgggtgtaccc--------------------cggggtaaga---tc---agtgccaagtgtgtgga- B D Guinea pig aggctagtgtaagcaccctgcaggctagtgtacacggtacccag---cc---agtgccaagtgtgtgga- B D Rabbit gg----------------------------------aggtccag---cc---agtgccaagtgtgtgcg- B D Pika gc----------------------------------aggtccag---cc---agagccaagagcctgca- B D Human gggcgggtgtacacaa--------------------ggatccgg---cc---agcgccgagtgtactgg- B D Chimp gggcgggtgtacacaa--------------------ggatccgg---cc---agcgccgagtgtactgg- B D Bonobo gggcgggtgtacacaa--------------------ggatccgg---cc---agcgccgagtgtactgg- B D Gorilla gggcgggtgtacacaa--------------------ggatccgg---cc---agcgccgagtgtactgg- B D Rhesus gggcgggtgtacacta--------------------ggatccgg---cc---agcgccgagtgtactgg- B D Marmoset gggcgggtgtacaccg--------------------ggatccgg---cc---cgcaccgagtgtacaga- B D Tarsier gggctggtgtacaccg--------------------ggatcagg---cc---agttcagggtgtgcgga- B D Bushbaby gggcaggtttacaccc--------------------ggatctgg---cc---agtgcggagggcacgga- B D Tree shrew cagctagtgtattcag--------------------cgatgggg---tcatcagggcctagtgtgcaga- B D Malayan flying lemur aggcgggtggacaccg---------------------ggtacgg---tc----------agggtgccg-- B D Pig -----------------------------acacttctgtcctcg---cc---agtggctaacgcatggat B D Dolphin -----------------------------acacgtctgtccccg---cc---agtgtcgagcgtacgga- B D Cow -----------------------------acaggtctgtccccg---cc---agtgtagagcgtacgga- B D Sheep -----------------------------acaggtctgtccccg---cc---agtgtcgagcgtacgga- B D Horse -----------------------------gcaaggccg-ccctg---cc---agcgcgcagcggagggg- B D Chinese pangolin -----------------------------acctgtctgtccccg---cc---agtgctgagtgaacgaa- B D Dog -----------------------------atac-tctgtccctg---cc---agcgtggagcgcccgga- B D Hawaiian monk seal -----------------------------acacgtctgtccccg---tc---ggtgtcgagcgtagggt- B D Hedgehog --------------------------------agtcggtccctgctacc---agggtgacgctcgggggt B D Elephant --------------------cgggggtgtagaggtctatcctgg---cc---agcgccgagcgagcggg- B D Tenrec --------------------c-gggctggacaggcccctgccag---cc---agtgcgaagcgtcccgg- B D Zebrafish ====================================================================== B D X. tropicalis ====================================================================== B D Opossum ====================================================================== B D Chicken ====================================================================== B D Shrew ====================================================================== Mouse atcc------------tgg--------tgtaa Rat atcc------------tgg--------cgtaa GCF_003668045 atac------------tgg--------tgcag Beaver ttccccacact-----cgc--------tgtaa Squirrel ttccccccacc-----tag--------t-tag Guinea pig ttcc-tcctcc-----cga--------t-tag Rabbit ataactacccctaagctgg--------catgg Pika ccaactacccctaagacgg--------tgtgc Human ttcctcccacc-----cag--------tgtag Chimp ttcctcccacc-----cag--------tgtag Bonobo ttcctcccacc-----cag--------tgtag Gorilla ttcctcccacc-----cgg--------tgtag Rhesus ttcctcccacc-----cgg--------tgcag Marmoset tccctccaacc-----ctg--------tgtag Tarsier ttcctcccacg-----cgg--------tgtag Bushbaby ttcctcccat------cgg--------tgcag Tree shrew actcccccacc-----aag--------tgtag Malayan flying lemur attccccaacc-----cga--------tgtag Pig ttttctccacc-----cgg--------tctag Dolphin ttctctccacc-----tcg--------tgtag Cow gtctctccacc-----cct--------tgaag Sheep gtctctccacc-----cct--------cgaag Horse --ctctctacc-----ccc--------tgtcg Chinese pangolin ttctctccacc-----ccg--------tgtag Dog ttctctccacc-----ccg--------tgtag Hawaiian monk seal ttctctccacc-----ccg--------tgtag Hedgehog tcctctctact-----cgc--------tgtaa Elephant -ttcccccact-----cgg--------tggag Tenrec -tctccccccg-----cggccccccattggag Zebrafish ================================ X. tropicalis ================================ Opossum ================================ Chicken ================================ Shrew ================================ Inserts between block 47 and 48 in window B D Rhesus 1bp B D Marmoset 1bp Alignment block 48 of 340 in window, 56739722 - 56739724, 3 bps B D Mouse cct-- B D Rat cct-- GCF_003668045 cct-- Beaver cct-- B D Squirrel cct-- B D Guinea pig cct-- B D Rabbit tca-- B D Pika cccct B D Human ccc-- B D Chimp ccc-- B D Bonobo ccc-- B D Gorilla ccc-- B D Rhesus ccc-- B D Marmoset ccc-- B D Tarsier ccc-- B D Bushbaby ccc-- B D Tree shrew ccc-- B D Malayan flying lemur ccc-- B D Pig ccc-- B D Dolphin ccc-- B D Cow ccc-- B D Sheep ccc-- B D Horse ccc-- B D Chinese pangolin ccc-- B D Dog ccc-- B D Hawaiian monk seal ccc-- B D Hedgehog ccc-- B D Shrew cct-- B D Elephant ccc-- B D Tenrec tcc-- B D Zebrafish ===== B D X. tropicalis ===== B D Opossum ===== B D Chicken ===== Alignment block 49 of 340 in window, 56739725 - 56739914, 190 bps B D Mouse cctccttcaca-ccctctggtcc-tctagcttc----cagtctcctactgagtaaatatttac------- B D Rat cctccttcaca-ccctctggccc-tccagcttc----cagtcgcctactgagtaaatatttac------- GCF_003668045 tctccttcacacccctctggtcc-tccagcttc----cagtctgctactaagtaaatatttac------- Beaver cctccttcaca-ccctctggccc-gccagcttt----cagtatctcactgagtaaatatttac------- B D Squirrel cctccgtcaca-ctttctggcccggccagcttc----ca-tctcccattgaataaatatttac------- B D Guinea pig catcgctcaca-ctctgaagtcctgctggcttc----cagtcccccactgagtaaatatttac------- B D Rabbit cctccttcaca-ccctct-gcccggccagcttc----cagtttcccactgagtaaatatttac------- B D Pika cctctttcacg-ccctgtggcctgactagcttc----cggtctcccgccgagtaaatatttac------- B D Human cctccttcaca-ctctc-ggccc----ggcttc----cagtctcccactgagtaaatatttat------- B D Chimp cctccttcaca-ctctcgggccc----ggcttc----cagtctcccactgagtaaatatttat------- B D Bonobo cctccttcaca-ctctcgggccc----ggcttc----cagtctcccactgagtaaatatttat------- B D Gorilla cctccttcaca-ctctcgggccc----ggcttc----cagtctcccactgagtaaatatttat------- B D Rhesus ccttcttcaca-ctctcgggcccggctggcttc----cagtctcccactgaataaatatttac------- B D Marmoset cctccttcaca-ctcta-ggcccggctggcttc----cagtctcccactgagtaaatatttac------- B D Tarsier cctccttcaga-ccctccggtccggccagcttc----cagtctcccactgagtaaatatttac------- B D Bushbaby cctccttcaca-ccctctggcccggtctgtttc----cagtctcccactgagtaaatatttag------- B D Tree shrew cctccttcaca-ctctctagtccaaccagcttt----cagtctcccgctgagtaaatatttac------- B D Malayan flying lemur cctttttaaca-cgctctggctcggccaacttc----cagtct-ctactgagtaaatattta-------- B D Pig actccttcaca-ccctccagctccatctgcttc----cagtcccctactgagtaaatatttac------- B D Dolphin cctccttcaca-ccctcccaccctgccagcttc----cagtctcccactgagtaaatatttac------- B D Cow cctccttcaca-agctcgtgtccagccagcttc----cagtctcccactgagtaaatatttac------- B D Sheep cctccttcata-cgctcccgtccagccagcttc----tagtctcccactgagtaaatatttac------- B D Horse cctccttcaca-ccct-ccgcccggccagcttc----cagtctcccactgagtaaatatttac------- B D Chinese pangolin cctccttcaca-gcgtccctcccggccagcttc----cagtctcccactgagtaaatatttac------- B D Dog gctccttccca-ccct-ccccc--gttagcttc----cagtctcctactgagtaaatatttac------- B D Hawaiian monk seal tctccttccca-ccct-ccccc--gctagcttc----cagtctcccactgagtaaatatttac------- B D Hedgehog cttcctccaca-ccctcctgcctgaccaacttccagtcagtctcccactgagtaaatatttac------- B D Shrew tcgccttcaca-ccctcc--cccggccagcttc----cagtctcccactgagtaaatatttac------- B D Elephant cctccttcaca-cgct-ctgcccggccagcttc----cagtctcccactgagtaaatatttac------- B D Tenrec cctcctttaca-cgcg-gggcccggccagcttc----caggcccccactgagtaaatatttac------- B D Opossum cctccttcata-ttccttctctt-gaaaacttg----aagttttctgatgagtaaatatttacattgaga B D Zebrafish ====================================================================== B D X. tropicalis ====================================================================== B D Chicken ====================================================================== Mouse ccagagaaggggtcgcccc--agaggaggcctt----ggagtttaga--gaa-agg-ctttt-ggtttcc Rat ccagagaaggggtcgccct--agaggaggcctt----agcgcccagg--gaa-agg-ctttt-ggtttcc GCF_003668045 ccagagaaggggtcgcccc--agaggaggcctt----agcgcctagggagaa-agg-ctttt-agcttc- Beaver ctagggaaggggtcgccccttggaggaggactttgacagagcctagg--gaa-agg--tttt-ggcttc- Squirrel ccagagaaggggttactcctcggagaaggcctc-gacagcgcctagg--gaa-aag-ctttt-ggcttct Guinea pig ccagaaaaggggtcacccctggtaggaggctct-gatagtgctcaag--gaa-agg-ctttt-ggtttct Rabbit ccagagaaggggtcacccctcagaggagtcctc-agcagcacccaag--gag-aggattttt-ggacgcc Pika ccagagaagaggtcacccctcggaggagtcctc--gcagctccgcgg--gaa-agg-ctttg-ggattct Human ccagagagcgagtcgcccctcggaggaggcctc-gac-gcggctagg--gaa-agg-ctttttggcttct Chimp ccagagagcgagtcgcccctcggaggaggcctc-gac-gcggctagg--gaa-agg-ctttttggcttct Bonobo ccagagagtgagtcgcccctcggaggaggcctc-gac-gcggctagg--gaa-agg-ctttttggcttct Gorilla ccagagagcgagtcgcccctcggaggaggcctc-gac-gcggctagg--gaa-agg-ctttttggcttct Rhesus ccagagagcgggtcgcccctcggaggaggcctc-gac-gcgactagg--aaa-agg-ctttttggcttct Marmoset ccagagagccggtcgcccctcggaggaggcctc-gac-gagactagg--gaa-agg-ctttttggcttct Tarsier ccagagagcgggtcgcccctcggaggaggcctc-aacagcctctagg--gaa-agg-cttttgggcttct Bushbaby tcagagagcgggtcgccccaccgaggaggcctt-gacagcgcctagg--ggatagg-ctttttggcttct Tree shrew ccaaagaacgggttgcccacc---ataggcctc-gaatgcgcctagg--gaa-agg-ctttt-ggcttct Malayan flying lemur ccaaagcacgggtcgctcctccgaggaggcctc-gacagcgtctacg--gaa-agg-ctttt-ggcttct Pig ccagggaatgggtccctcctcagaggaggccca-gacagcaccctaa--gaa-ggg-ctttt-gacttct Dolphin ccggagaacgggtcgctcctcagaggaggccta-gacagcgccctgg--gaa-ggg-ctttt-ggcttct Cow ccggaggacgggtcgctcctccgagaa---cta-gacagagcccttg--gaa-ggg-ctttt-ggcttct Sheep ccggaggac-ggtcgctcctctgagaa---cta-gacagcgccctgg--gaa-ggg-ctttt-ggcttct Horse ccagagaacgggtcgcccctcggaggaggcctc-gacagcgtcc-gg--gaa-ggg-ctttt-ggcttct Chinese pangolin ccagagaacgggtcgcccctcagaggaggcctt-gacagcgccctgt--gaa-ggg-ttttc-ggctttt Dog cctgagagagggtagccccttggaggaggcctc-gacagcaccctgg--gaa--gg-ctttt-gacttct Hawaiian monk seal ccagagaacgggtagcctcttggaggaggcctc-gacagcaccctgg--gaa-ggg-ctttg-ggcttct Hedgehog ccagagaactggtcgacccttagtggaagcctcggacagtgcccagg--gaa-gaa-ctttc-agcttct Shrew ccagggaacaggtcgcccctctgaggaggtctc-caccgcgccctgg--gaa-gga-ctttt-ggcttct Elephant ccagagaacggttcgcccctgggaggaggcctc-gccagcgacaagg--gaa-gga-cgttt-ggctttc Tenrec ccagagaacgggtcgcccctgggaggaggcctc-gccagcgcccagg--gaa-gga-ctttt-ggcttt- Opossum actgagaacggatctcccctaaaagga-------------------a--gct-gag-gtttt-ggttttt Zebrafish ====================================================================== X. tropicalis ====================================================================== Chicken ====================================================================== Mouse ttc---tg-----gcccgagccagctgcaggccttt----ctggttgtgttttgg--ttttggtcttaga Rat ttc---tg-----gcccgagccagctgcgggccttt----ctggttatgttttgg--tttgggtcttaag GCF_003668045 -tc---tg-----gcctgagccagatgcaggccttt----ctggccatgttttgg--ttttggtcttaag Beaver -tc---tg-----------ggcagctgcaggcctta----ctggttatgttttgg--ttttggtcttaaa Squirrel ccc---tg-----gctagaaccagctgcaggcctta----ctgattgtgttttgg--ttttggtcttaaa Guinea pig ccc---tg-----gcctgagccagctgtaggcctta----caggttgtgttttgg--ttttagtcttaaa Rabbit ccc---caccaccaccagaagcagctgcaggcctta----ctggttgtgttttgg-tttttggtcttaaa Pika ctg---agaggccatt---agcagctgcaggcctta----ttgggtatgtgtgggttttttggtctttaa Human ccc---tg-----gcctgagccagctgcaggcctta----ctg---gtgttttgg--ttttggtcttaaa Chimp ccc---tg-----gcctgagccagctgcaggcctta----ctggttgtgttttgg--ttttggtcttaaa Bonobo ccc---tg-----gcctgagccagctgcaggcctta----ctggttgtgttttgg--ttttggtcttaaa Gorilla ccc---tg-----gcctgagccagctgcgggcctta----ctgattgtgttttgg--ttttggtcttaaa Rhesus ccg---cg-----gcctgagccagctgcaggcctta----ctggttgtgttttgg--ttttggtcttaaa Marmoset ccc---cg-----gcctgagccagctgcaggcctta----ctggttgtgttttgg--ttttggtcttaaa Tarsier ccc---tg-----gcctgagccagctgcaggcctta----ctggttgtgttttgg--tttgggtcttaaa Bushbaby ccc---tg-----gcctgagccagctgcaggcctta----ctggttgtgttttgg--ttttggtcttaaa Tree shrew cct---ct-----gcctttgtcagctgtaggcctta----ctggtcctgttttgg--ttttggtcttaaa Malayan flying lemur ctc---cg-----gcctgagccagctgcaggcctta----ccggttgtgttttgg--tttgggtcttaaa Pig tct---gg-----gcctgtgtcaactgcaggcctta----ctggttgtgttgtgg--tttgggtcttaaa Dolphin ccc---cg-----gcctgtgtcagctgcagacctta----ctggttgtgttttgg--ttttggtcttaaa Cow tcc---cg-----gcctatgtcagctgcaggactta----cttgttgt------g--ttttggtcttaaa Sheep tcc---cg-----gcctgtgtcagctgcaggactta----c---ttgt------g--ttttggtcttaaa Horse ccc---cg-----gcctgtgtcagctgcaggcctta-----cggtcgtgttttgg--ttttggtcttaaa Chinese pangolin ccc---cg-----gcctgtgtcagctgcaggccttaatggttggttgtgttttgg--ttttggtcttaaa Dog ccccctcg-----gcctgtgttagctgcaggcctta----ctggttgtgttttgg--ttttg-------- Hawaiian monk seal ccc---cg-----gcctgtgtcagctgcaggcctta----ctggttgtgttttgg--tttggtcttttag Hedgehog ccg---ag-----gcctgagtcagcttcaagcctta----cagacagtgttttgg--tttgtgtctggtg Shrew ccg---tg-----gcctgtgtcagctgcaggccttg----ctggctgtgttttgg--ttgtggtcttaaa Elephant tcc---cg-----gtctgagtcagctgcaggcctta----ctgattgtgttttgg--ttttgttcttaaa Tenrec tcc---tt-----gtctgagtcagctgcaggcctta----ctggttgtgttttgg--ttttgttcttaaa Opossum ctt---cc-----atttga---aactgtaag---------ggatttgtgcttttc--atttgtctttaaa Zebrafish ====================================================================== X. tropicalis ====================================================================== Chicken ====================================================================== Mouse tttt--tcctttca-gtaaa---------a Rat tttc--ccctttta-gtaaa---------a GCF_003668045 tttc--tcctttta-gtaga---------a Beaver ttt-----ctttta-gtcca---------g Squirrel ttt----cctttta-atcga---------a Guinea pig tttc--ctccctca-gccga---------a Rabbit tttc--ttcattta-gtcaa---------a Pika tgtc--t---tttg-gtttaatgtctttta Human tttc--tcctttta-gtcga---------a Chimp tttc--tcctttta-gtcga---------a Bonobo tttc--tcctttta-gtcga---------a Gorilla tttc--tcctttta-gtcga---------a Rhesus tttc--tcctttta-gtcga---------a Marmoset tttc--tcctttta-gttga---------a Tarsier tttc--tcctttta-gttga---------a Bushbaby tttc--t--tttta-gtcga---------a Tree shrew tttc--ccctcct---tag----------- Malayan flying lemur tttc--ctcttcta-gtaga---------a Pig ------tttcttta-gtgga---------a Dolphin ------tttcttta-gtcga---------a Cow ------tttcttta-gctga---------a Sheep ------tttcttta-gccga---------a Horse t-----ttctttta-gtcga---------a Chinese pangolin t-----ttcttgta-gtcga---------a Dog ------gtctttta-gttga---------c Hawaiian monk seal aagaaattccttta-gtaga---------c Hedgehog t-----ttctttca-gtgga---------a Shrew t-----ttctttta-ggcga---------a Elephant tttc--ccctttta-attga---------a Tenrec tttc--ctttttaaggtcga---------a Opossum tata--tctttgca-gtcaa---------a Zebrafish ============================== X. tropicalis ============================== Chicken ============================== Inserts between block 49 and 50 in window B D Opossum 2729bp Alignment block 50 of 340 in window, 56739915 - 56739994, 80 bps B D Mouse a-ttctcctgattccccca----tgacc--tctt--ggatccagatc--tca--gtaa----cca-g-gg B D Rat a-tgctcccgattcctcta----tgacc--tctt--gagtccagat---tca--gtaa----ccc-g-gg GCF_003668045 a-ttctcccaattcctata----tgacc--tcct--ggatccagact--tca--gtaa----cca-g-gg Beaver a-ctcttccaagccctgtg----tgatc--tc-t--gggtccagagcgagca--gtaa----cca-gagg B D Squirrel a-ttcttccgatccctgtg----tgatc--tcct--gcgtccagaaggggca--gtaa----cca-gggg B D Guinea pig a-ttcttccagctcctgtg----tgatt--tcct--ggatttggaacaggca--gtaa----cta-aggg B D Rabbit a-ttcttccgatccc--tg----tgatc--tcct--gggtatagagtgagca--gtaa----aca-gggg B D Pika g-ttcttccgaaccc--tg----tcagc--tcct--gggcccggagtaagca--gtaa----aca-gggg B D Human a-ttcttccgatctctttg----agatc--ttct--gagtccagagtgagcagtgtaa----cca-ggcg B D Chimp a-ttcttccgatctctttg----agatc--ttct--gagtccagagtgagcagtgtaa----cca-ggcg B D Bonobo a-ttcttccgatctctttg----agatc--ttct--gagtccagagtgagcagtgtaa----cca-ggcg B D Gorilla a-ttcttccgatctctttg----agatc--ttct--gagtccagagtgagcagtgtaa----cca-ggcg B D Rhesus a-tttttcccatctctttg----tgatc--ttct--gggtccagagtgagca--gtaa----cca-aggg B D Marmoset a-ttcttctaatctctttg----tgatc--tcct--gggtccagactggcca--gtac----cca-gggg B D Tarsier a-ttcttccgattccactg----tgatc--tcct--ggatccagagtgggca--gtaa----cca-gggg B D Bushbaby a-ttcttccgattcctgtg----tgacc--tcct--aagtccagagcgggca--gtaa----cct-gggg B D Tree shrew ---ttttctgatccccgtg----tgatt--tcc---acgtccagagatggca--gtga----ctt-ggga B D Malayan flying lemur t-ttcttccgatctctgtg----tgatc--tcct--gggtccagagcgggca--gtaa----cca-aggg B D Pig a-tacttccgatctctgtg----tgatc--tcct--gggttctgagggggca--gtaa----cca-gggg B D Dolphin a-ttcttccgatctctgtg----tgatc--tccc--gggttcagagcaggca--gtaa----cca-gggg B D Cow a-ttcttccgatctctgtg----tgatc--tcct--gggttcggagggggca--gtaa----cca-gggg B D Sheep a-ttcttccgatctctgtg----tgatc--tcct--gggttcggagggggca--ttaa----cca-gagg B D Horse a-ttcttcccttctctgtg----tgatc--tccc--gggtccagaccaggca--gtaa----ccaggggg B D Chinese pangolin a-ttcttccgatctctggg----tgatc--tccc--agatctagagccggca--gtaa----cca-gggg B D Dog a-tttttccgatctcagtg----taactgagtct--gggtccacagcgggca--gtaa----tcg-ggca B D Hawaiian monk seal attttttccgatctctttg----taatc--ttcc--gggtccgcagcgggca--gtaa----cca-ggga B D Hedgehog a-ttcttcccatctctgtg----ttctc--cctccagagttctgagcggata--gtaagtagtca-gggg B D Shrew a-ttcttcctttctccatg----tgatc--tctc--aggtccagagcgggca--gaaa----cca-gggg B D Elephant a-ttcttccgacccctgagtgtatgatc--tcct--gggtccggagcgggca--gtaa----cca-cggg B D Tenrec a-ttcttccgaccccggcg----tgatc--tccc-----------ccaggca--gtaa----cca-gggg B D Zebrafish ====================================================================== B D X. tropicalis ====================================================================== B D Opossum ====================================================================== B D Chicken ====================================================================== Mouse gccctggacctcagtgaccctt-gctcttt Rat gccctggacctcagtaaccctt-gctcttt GCF_003668045 tccctgaccctcagtgaccttc-tcacttt Beaver gcgctgaccccaagcgaccctt-gctcttt Squirrel gcgctgaccccaggtgaccctt-gctattt Guinea pig gagctgccccttcctgactttt-actctgt Rabbit gtactgaccccagctgaccctt-gctctct Pika gtgctgaccctgcctgaccctt-gttctct Human gca--gactccagctgaccctt-gttcttg Chimp gca--gactccagctgaccctt-gttcttg Bonobo gca--gactccagctgaccctt-gttcttg Gorilla gca--gactccagctgaccctt-gttcttg Rhesus gcactgactccagctgaccctt-gttcttt Marmoset gcagtgactccagctgactctt-gtttttt Tarsier gcg----------ctgaccctc-gt----- Bushbaby gcgctgaccccagttgaccctc-gctcttt Tree shrew accctgaccccatttgaccctt-gttcccc Malayan flying lemur gcactgaccccagctgaccttt-gtt---- Pig gcgctgacctcaactgaccctt-gcttttt Dolphin gcgctgacctcaactgaccctt-gcttttt Cow gcgctgacctcaactgaccctt-ccttttt Sheep gcgctgacctcaactgaccctt-ccttttt Horse gcgctgaccccagctgaccctt-gttcttt Chinese pangolin gcgctgaccccagctgaccctt-attcttt Dog gcgctgaccccagctgccccttggctcttt Hawaiian monk seal gcgctaaccccagctgccccttggctcttt Hedgehog gccttgaccccagctgaccctt-gctcttt Shrew gcactgaccccagctgaccctt-actcttt Elephant gcgctgaccccagctgaccctt-gcttttt Tenrec gcgctgcccccagctgaccctt-gctcttt Zebrafish ============================== X. tropicalis ============================== Opossum ============================== Chicken ============================== Inserts between block 50 and 51 in window B D Rabbit 4bp B D Pika 1912bp Alignment block 51 of 340 in window, 56739995 - 56740095, 101 bps B D Mouse cttgaagtcctgcatct--c-tatgtcca-------cta-------gggc-tcactgg------------ B D Rat cttcaagttctgtatcc--c-tatgttca-------cta-------gggc-tcactgg------------ GCF_003668045 cttgaagtcctgcatct--c-tatgccca-------gga-------aggc-tcactggt--act------ Beaver cttgaactcctcttcct--c-tcctctc---------------------c-tctcctc------------ B D Squirrel ctccaagtcccgtatcc--c-tattctc------------------------------------------ B D Guinea pig ctcaaagttttacattc--c-tgtgccta-------cag-------gggt-tcactga------------ B D Rabbit ctcttagtcctacatcc--t-taggccca-------ccatctgtctgggt-ttactgga--ccttagtgc B D Human ttctaggtcctgcatcc--t-tacattca-------tcg-------ggac-tgaccaga--cctt----- B D Chimp ttctaagtcctgcatcc--t-tacattca-------tcg-------ggac-tgaccaga--cctt----- B D Bonobo ttctaagtcctgcatcc--t-tacattca-------tcg-------ggac-tgaccaga--cctt----- B D Gorilla ttctaagtcctgcatcc--t-tacattca-------tcg-------ggac-tgaccaga--cctt----- B D Rhesus ctctaagtcctgcatcc--t-tacgttca-------tcg-------ggac-tgaccaga--cctt----- B D Marmoset ctctaagtcctacgtcc--t-tacgccca-------ttg-------gaac-tgactata--cctg----- B D Tarsier -tctaagtccttcatcc--c-tatgcccacc----ctcg-------gggc-ttactaga--cttc----- B D Bushbaby ctcaaaatcttacatgc--t-tgtgccca-------cca-----ccaggc-ttactaga--cctt----- B D Tree shrew cccccattccaacctc---c-taaacccaca----gttg-------gggctttactaaa--tctt----- B D Malayan flying lemur cttaaagtcctgcatct--c-tacgcctacc----gtaa-------gagc-ttattgga--cctt----- B D Pig ct-------ctgaatcc--c-tacgcccactgtgggtag-------cggt-ttactggt--cctc----- B D Dolphin ct-------ctgcatcc--c-tacgcccatcgtcggtcg-------aggc-ttactgtc--cctt----- B D Cow ct-------ctgcatcc--c-tacgctcaccatcagtcg-------aggc-ttattggc--cctt----- B D Sheep ct-------ctgcatcc--c-tacgctcatcatcagtcg-------aggc-ttattggc--cctt----- B D Horse cgctaagtcctgcatcc--t-tatgcccacc----gttg-------aggt-ttaccggc--cctt----- B D Chinese pangolin ctccaagtcctgcatccctt-tacactcacc----gtcg-------aggc-ttattggc--cctt----- B D Dog ctccaagttctgcgtcc--c-taggcccact----gtcg-------aggc-ttactggc--cctt----- B D Hawaiian monk seal ctcgaagtcctgcgtcc--c-taggcccacc----gtcg-------aggc-ttaccagc--cctt----- B D Hedgehog cttgcagcccaacccac--t-agagcgctcc----ctct-------ggcc-ctcccgcccgcctt----- B D Shrew atagcagc-------------------------------------------------cttgcatt----- B D Elephant --cacagacctgcacct--tattcgcccacc----gtct-------ggcc-ttgctggc--cgtc----- B D Tenrec --cccagccctgcatcc--c-ttcgcccacc----gtct-------agcc-ttactgtc--ttgc----- B D Pika ====================================================================== B D Zebrafish ====================================================================== B D X. tropicalis ====================================================================== B D Opossum ====================================================================== B D Chicken ====================================================================== Mouse --agg--------------gc------t--------------ctcttct--------------------- Rat --agg--------------gc------t--------------ctcttct--------------------- GCF_003668045 --aag--------------tt------t--------------cttttcc--------------------- Beaver --aag--------------tc------t--------------cctctgc--------------------- Squirrel ---------------------------t--------------ctcttct--------------------- Guinea pig --atc--------------ag------t--------------ctctttc--------------------- Rabbit ccagt--------------gc------t--------------cttctct--------------------- Human --agt--------------gt------t--------------ctctctt--------------------- Chimp --agt--------------gt------t--------------ctctctt--------------------- Bonobo --agt--------------gt------t--------------ctctctt--------------------- Gorilla --agt--------------gt------t--------------ctctctt--------------------- Rhesus --aga--------------gt------t--------------ctctctc--------------------- Marmoset --aat--------------gt------t--------------ctttctc--------------------- Tarsier --agt--------------gtaccctct--------------ctctctc--------------------- Bushbaby --agt--------------gc------t--------------ctctctt--------------------- Tree shrew --aat-------------------------------------ctctctc--------------------- Malayan flying lemur --agt--------------ga------g--------------cgctctc--------------------- Pig --aca--------------gt------tttagtcagtttcaatctccct--------------------- Dolphin --act--------------gt------t--------------tctctct--------------------- Cow --act--------------gt------t--------------tctctct--------------------- Sheep --act--------------gt------t--------------tctctct--------------------- Horse --agt--------------gt------t--------------tctc--t--------------------- Chinese pangolin --aatttccaccccaccacgc------t--------------tccccat--------------------- Dog --tac--------------gt------c--------------tctccct--------------------- Hawaiian monk seal --tag--------------gt------t--------------tctctctctccctccctcccgcctgccc Hedgehog --cct--------------ct------t--------------tccatct--------------------- Shrew --tct--------------gt------g--------------cctatct--------------------- Elephant --agc--------------gt------c--------------ctc-tct--------------------- Tenrec --agg--------------gc------t--------------ctcttct--------------------- Pika ====================================================================== Zebrafish ====================================================================== X. tropicalis ====================================================================== Opossum ====================================================================== Chicken ====================================================================== Mouse -----cc----atctcctacc-------------------------------------ctcttctacc-- Rat -----cc----ctcccctact-------------------------------------ctcttctacc-- GCF_003668045 -----cc------------ct-------------------------------------ctctctggtc-- Beaver -----cctcctctcctctcct-------------------------------------ctcttctctt-- Squirrel -----ct------------ct-------------------------------------cccttc------ Guinea pig -----cc--------tgttcc-------------------------------------cccttgtgtc-- Rabbit -----ag----ctcgccttct-------------------------------------ttcctccatc-- Human -----tt------------cc-------------------------------------ttccttcat--- Chimp -----tt------------cc-------------------------------------ttccttcat--- Bonobo -----tt------------cc-------------------------------------ttccttcat--- Gorilla -----tt------------cc-------------------------------------ttccttcat--- Rhesus -----tt------------cc-------------------------------------ttctcccatc-- Marmoset -----tt------------cc-------------------------------------ttcctctatc-- Tarsier -----tt------------cc-------------------------------------ttcctccctt-- Bushbaby -----t--------------c-------------------------------------ctcctccatt-- Tree shrew -----tt------------tc-------------------------------------tccccgtac--- Malayan flying lemur -----tt------------ct-------------------------------------t----------- Pig -----cc------------ct-------------------------------------tccttcctc--- Dolphin -----ct------------ct-------------------------------------ccctac--c--- Cow -----tt------------ct-------------------------------------c----------- Sheep -----tt------------ct-------------------------------------c----------- Horse -----ct------------c-------------------------------------------------- Chinese pangolin -----tt------------c-------------------------------------------------- Dog -----cc------------ca-------------------------------------gttctagccctc Hawaiian monk seal gcctgcc------------cg-------------------------------------cctctagccctc Hedgehog -----tt------------ctctccaatagtcttttactggggttgggagggtgtgggctacccagccac Shrew -----ta------------cc-------------------------------------ccacccggc--- Elephant -----gt------------ct-------------------------------------cacccacatc-- Tenrec -----gt------------tt-------------------------------------cgcc----tc-- Pika ====================================================================== Zebrafish ====================================================================== X. tropicalis ====================================================================== Opossum ====================================================================== Chicken ====================================================================== Mouse -----------------------cactccttc---atttcttg--tctctc---acc Rat -----------------------catttctgc---attccttcc-tctctc---acc GCF_003668045 -----------------------catttgtgc---attccttcc-tct--------c Beaver -----------------------cccttctcc---tcttctcc--ttcctc---ccc Squirrel ------------------------------------ttcctaa--ttcctc---tcc Guinea pig -----------------------tccatctct---gtccctccg-tttttc---cat Rabbit -----------------------cttcttgcccagattgcttt--tttttt---ttt Human -----------------------cctctttct---ctgcctcagatccgtc---gtc Chimp -----------------------cctctttct---ctgcctcagatccgtc---gtc Bonobo -----------------------cctctttct---ctgcctcagatccgtc---gtc Gorilla -----------------------cctctttct---ctgcctcagatccgtc---gtc Rhesus -----------------------cctctttct---ctccctcagatccgtc---gtc Marmoset -----------------------cctctttct---ctccctcagatccgtc---gtc Tarsier -----------------------cctctttcc---ttccctcagatctgtc----tc Bushbaby -----------------------cttcttttt---ctcccttagatctg------tc Tree shrew -----------------------ctctgcccc---tctcctctgctttcaccctttt Malayan flying lemur -----------------------------tcc---ttcccttagatgtctagtggtc Pig -----------------------cctccttcc---tttctccccacc---------- Dolphin -----------------------ccccatccc---tccccccccacc---------- Cow -----------------------------ccc---ccgccccacacc---------- Sheep -----------------------------ccc---tcgccccacacc---------- Horse -----------------------cctctttat---ctccttcaggtc---------- Chinese pangolin -----------------------cgtcattcc---ctccttcaggtc---------- Dog tagt-------------------cctctttcc---cttcttctggtc---------- Hawaiian monk seal gagt-------------------cctctttcc---ccttttcaggtc---------- Hedgehog agagctcagtctgtgaatgggagtaccaaccc---cttcct---------------- Shrew -----------------------tccctcccg---ctccgt---------------- Elephant -----------------------cctccagtc---agtcagctgct----------- Tenrec -----------------------cagtcagtt---cgccagcggct----------- Pika ========================================================= Zebrafish ========================================================= X. tropicalis ========================================================= Opossum ========================================================= Chicken ========================================================= Inserts between block 51 and 52 in window B D Pig 21bp B D Cow 23bp B D Sheep 23bp B D Horse 7bp B D Chinese pangolin 6bp B D Dog 7bp B D Hawaiian monk seal 7bp B D Hedgehog 14bp B D Shrew 14bp Alignment block 52 of 340 in window, 56740096 - 56740216, 121 bps B D Mouse tcacacatctccgccctcctggtt-----------------tt---------tgct-aagactcctggga B D Rat tcacacatctccttcctcttggtt-----------------tt---------tgct-cagacttcaggga GCF_003668045 tctcacacctcctctctccccact-----------------tt---------tgct-aggactccagaaa Beaver tc---catcagtggtctcccccgc-----------------gc---------ggct-cgg-ctgctgg-- B D Squirrel tc---caggtcag-----------------------------t---------tgct-ctggctc------ B D Guinea pig tccc-cagatcca-----------------------------t---------tgcc-----ctcagcggg B D Rabbit taactcgggatcagagtgtgctttgag----aaggc-----tt---------cact-cag---------- B D Human tc----------------------------------------t---------cggt-cggtctcagcggg B D Chimp tc----------------------------------------t---------cggt-cggtctcagcggg B D Bonobo tc----------------------------------------t---------cggt-cggtctcagcggg B D Gorilla tc----------------------------------------t---------cggt-cggtctcagcggg B D Rhesus tc----------------------------------------t---------gggt-cggtctcagcggg B D Marmoset tc----------------------------------------t---------cggt-ggagctcag---- B D Tarsier tc----------------------------------------t---------cgct-tcggtttagcggg B D Bushbaby tc----------------------------------------t---------tgct-cgggctcagcggg B D Tree shrew tc----------------------------------------tctgctcgtacact-cgggctcagccca B D Malayan flying lemur tc----------------------------------------t---------cgct-ccggctcaactga B D Pig gg----------------------------------------t---------cactcggttctcatcagg B D Cow gg----------------------------------------t---------cact-gtctctcgccggg B D Sheep gg----------------------------------------t---------cact-gtctttcgccggg B D Horse tc----------------------------------------t---------cgtt-ggggcttattggg B D Chinese pangolin tc----------------------------------------t---------cgct-ggggctcatcagg B D Dog tc----------------------------------------t---------ctct-tgggctcttctat B D Hawaiian monk seal tc----------------------------------------t---------cgct-cgggctcttcgat B D Hedgehog tt----------------------------------------t---------ctatctgctcccctgaag B D Shrew tc----------------------------------------t---------ctcctgtctcttctcagg B D Elephant -------------------------tgggacaaggccatctct---------cgct-cgggctcagcggg B D Tenrec -------------------------tgagacaaggccatcgct---------cgcc-agggctcagcggg B D Pika ====================================================================== B D Zebrafish ====================================================================== B D X. tropicalis ====================================================================== B D Opossum ====================================================================== B D Chicken ====================================================================== B D Dolphin NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN Mouse tc-------------------------------------tgtggc--tac----------t--tgat-cc Rat tc-------------------------------------acccgc--tgc----------t--tagc-cc GCF_003668045 tc-------------------------------------acaggc--tcc----------a--tggc-ct Beaver ----------------------------------------ctggc--tac----------c--tcgc-cc Squirrel ------------------------------------------agc--tat----------t--tcgc-cc Guinea pig tc-------------------------------------actgtc--tac----------t--tcac-cc Rabbit -c-------------------------------------accagc--acc----------t--t--c-ca Human tc-------------------------------------gctgac--tac----------c--tcgc-cc Chimp tc-------------------------------------gctgac--tac----------c--tcgc-gc Bonobo tc-------------------------------------gctgac--tac----------c--tcgc-gc Gorilla tc-------------------------------------gctgac--tac----------c--tcgc-cc Rhesus tc-------------------------------------gctgac--tac----------c--tcgc-cc Marmoset -----------------------------------------tgcc--tgc----------c--tcgc-cc Tarsier tc-------------------------------------g-tgactatac----------c--tcgc--c Bushbaby tg-------------------------------------tctgga--tgc----------c--ttgctcc Tree shrew tg-------------------------------------gctggc--tac----------a--c------ Malayan flying lemur tc-------------------------------------gccggc--tac----------t--c-gc-cc Pig tcaccag--------------cacactggtctctgggctcctggc--tac----------c--tggc-ca Cow tc-------------------------------------tcaggc--tac----------c--tggc-ca Sheep tc-------------------------------------tcaggc--tac----------c--tggc-ca Horse tc-------------------------------------gccggc--tacctagccacggc--taga-ta Chinese pangolin tc-------------------------------------gccggc--tac----------c--tggt-ca Dog tt-------------------------------------g--------------------------c-ca Hawaiian monk seal tt-------------------------------------gcctgc--tac----------c--tgac-ca Hedgehog ct-ttagctagtgtacacacacacacacacacacacacacacact--cac----------c--agga-gt Shrew cc-ttag---------------------------atgcccgctgc--tac----------c--tggc-ca Elephant cc-------------------------------------gcgggc--tac----------c--tcgc-tc Tenrec cc-------------------------------------gcgggc--tcc----------aagtggc-cc Pika ====================================================================== Zebrafish ====================================================================== X. tropicalis ====================================================================== Opossum ====================================================================== Chicken ====================================================================== Dolphin NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN Mouse c-----ta-g--ggcact-gt--gtg--------------------------cccttgcttgggaagggg Rat c-----ta-g--ggtacttgt--gtg--------------------------cccttgcttgagaaggga GCF_003668045 c-----ca-g--gacacc-at--gtg--------------------------cc----cacgggaaggga Beaver c-----tata--gtcaat-gt--acg--------------------------ctc----------aggga Squirrel c-----taca--ctcagt-gt--gcg------------------------acccctgacccccgttcgga Guinea pig c-----taca--cttggt-gt--gca--------------------------ccc----------aggga Rabbit c-----ta-a--gatatt-gtcgctg--------------------------ctc------------tgt Human t-----agca--ctcggt-cc--gcg--------------------------ccc---------cgggaa Chimp t-----agca--ctcggt-cc--gcg--------------------------ccc---------cgggaa Bonobo t-----agca--ctcggt-cc--gcg--------------------------ccc---------cgggaa Gorilla c-----agca--ctcggc-cc--gcg--------------------------ccc---------cgggaa Rhesus c-----agca--ctcggc-cc--gcg--------------------------ccc---------cgggaa Marmoset c-----agca--ctctgt-cc--gcg---------------------------cc---------tgggaa Tarsier g-----ggca--ctcaat-gt--gag--------------------------cct---------ccggaa Bushbaby t-----ggca------------------------------------------------------------ Tree shrew ---------------aac-gg--gcg--------------------------ccc---------tcagga Malayan flying lemur c-----cgca--ctaagt-gc--gcg--------------------------ccc---------ccggga Pig c-----agca--ct--gt-gt--gca--------------------------tcc---------ccggga Cow c-----agtg--ctcagt-gt--gcg--------------------------tcc------gggcaggga Sheep c-----agtg--ctcaga-gt--gcg--------------------------tcc------gggcaggga Horse tccgggagtt--ttcagc-gt--c-acttcttcctctaggatcccgcgctctgtc---------ccttga Chinese pangolin c-----agca--ctcagt-gt--g-a--------------------------gtc---------ccggga Dog t-----atca--ctcagt-gt--g-a--------------------------tcc---------cagggg Hawaiian monk seal t-----agca--ctcagt-gt--gcg--------------------------gcc---------ccggga Hedgehog a-----attg--ctgatt-------a--------------------------ttc---------cctgga Shrew c-----agtg--ctga---------g--------------------------ttc--------------a Elephant c-----agca--cttgtg--t--ggc--------------------------ccc---------caggaa Tenrec c-----gggaagctttcg-ct--agc--------------------------ccc-----------gcct Pika ====================================================================== Zebrafish ====================================================================== X. tropicalis ====================================================================== Opossum ====================================================================== Chicken ====================================================================== Dolphin NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN Mouse a------------gtttcct---ca----cagg---------cccctt-cttggag Rat a------------gtttctg---catgcgctgt---------cccttt-cttggag GCF_003668045 a------------gattcag---ca----ctag---------cccctt-cttggag Beaver g------------ggttcag---ta----ctaa---------ctctttcccttgag Squirrel g------------gattcag---ca----ccag---------cccttccagctaag Guinea pig a------------g---------ta----ccag---------cctttcctgctgag Rabbit a------------gtttggg---ct----cctt---------ttgctc-ctaggga Human g------------gcttcag---ca----tcac---------cctcttctgctggg Chimp g------------gcttcag---ca----tcac---------cttcttctgctggg Bonobo g------------gcttcag---ca----tcac---------cttcttctgctggg Gorilla g------------gcttcag---ca----tcac---------cctcttctgcgggg Rhesus g------------gcttcag---cc----tcac---------cctcttctgctggg Marmoset g------------gcttcag---cg----tcac---------cctcttctgctggg Tarsier g------------g-tccgg---ca----tcag---------ccgcttctgctggg Bushbaby -------------gtttcag---tc----tcag---------cccctgctgttggg Tree shrew g------------ggttcaa---ca----tcag---------tgccttc-ccctgg Malayan flying lemur g------------ggttcag---ca----tctg---------ccgcttt-gctggg Pig g------------ggttctg---cc----ttag---------cccattctcctag- Cow ggtggcggggga-gagtctg---ca----tcag---------ccccttcatctag- Sheep ggtggggagggaggagcctg---ca----tcag---------ctccttcatctag- Horse a------------gcttcga---ct----c------------ctcttgcccccag- Chinese pangolin g------------agttcag---ca----ccag---------ccccttcctctag- Dog g------------ggttcag---ca----tcag---------ccccttgctctag- Hawaiian monk seal g------------ggttcag---ca----tcag---------caccttcctctag- Hedgehog g----------------------ct----ttggttcctagcctcagtttgttgag- Shrew g----------------------ca----atag---------ccactttctggag- Elephant g------------atttagg----a----ccgg---------tcccttccgttag- Tenrec g------------acctcggcagcg----ctgg---------tccttcctg----- Pika ======================================================== Zebrafish ======================================================== X. tropicalis ======================================================== Opossum ======================================================== Chicken ======================================================== Dolphin NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN Inserts between block 52 and 53 in window B D Pig 11bp B D Cow 14bp B D Sheep 14bp B D Horse 16bp B D Chinese pangolin 82bp B D Dog 12bp B D Hawaiian monk seal 14bp B D Hedgehog 33bp B D Shrew 17bp Alignment block 53 of 340 in window, 56740217 - 56740236, 20 bps B D Mouse -------------------a----tgacat--ggctct-cctctat B D Rat -------------------a----tgacat--ggtttt-cctctat GCF_003668045 -------------------g----tgaaat--gtctct-cctctgt Beaver ----------------------------------ccct-tctctgc B D Squirrel -------------------a----tccagc--tgccaa-tgtttgc B D Guinea pig -------------------a----tttgctcaggtcct-cacctgc B D Rabbit -------------------g----cgagct---------------- B D Human -------------------a----tcccgc--tgaccc-tgt---- B D Chimp -------------------a----tcctgc--tgaccc-tgt---- B D Bonobo -------------------a----tcccgc--tgaccc-tgt---- B D Gorilla -------------------a----tcccgc--tgaccc-tgt---- B D Rhesus -------------------a----tcccgc--tgacac-tgt---- B D Marmoset -------------------g----tctcac--tgacag-cgtctg- B D Tarsier -------------------a----ccccgc--tgcccc-agt---- B D Bushbaby -------------------a----tccctc--tgctgc-tgtctgt B D Tree shrew -------------------a----tcccgc--tgccccgcttttgc B D Malayan flying lemur -------------------atccctcccgc--agtccc-cgtctgc B D Pig ------------------------tct------------------- B D Cow -------------------g----tct------------------- B D Sheep -------------------c----tct------------------- B D Horse -------------------t----gct------------------- B D Dog -------------------g----tct------------------- B D Hawaiian monk seal -------------------a----tct------------------- B D Hedgehog -------------------c----tcc------------------- B D Shrew -------------------c----tat------------------- B D Elephant gtcaagccacttccgcctga----t--------------------- B D Tenrec -------cacttagtcgtga----c--------------------- B D Pika ============================================== B D Zebrafish ============================================== B D X. tropicalis ============================================== B D Opossum ============================================== B D Chicken ============================================== B D Chinese pangolin ============================================== B D Dolphin NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN Inserts between block 53 and 54 in window B D Pig 3bp B D Cow 3bp B D Sheep 3bp B D Horse 3bp B D Dog 3bp B D Hawaiian monk seal 3bp B D Hedgehog 5bp B D Shrew 89bp Alignment block 54 of 340 in window, 56740237 - 56740293, 57 bps B D Mouse tc--cagcatcttcgg-----tttata---------aggtctctaagcacc------g-----ggtggtc B D Rat tc--tagcatctttag-----ttccta---------aggtccctaagcagt------g-----agttgtc GCF_003668045 tc--ttgcatctccag-----ttcata---------aagtccttaatcaccgactttg-----gtttgtc Beaver tc--ctgcagcttcagcgcctttcttc-----------ttccttgagcgtg------g-----gcttgct B D Squirrel tt--ctgtgtttctgc-----tcctga-----------gtatgtaggcttc------c-----gcttccc B D Guinea pig tt--gtttggcttctg-----ttgttgtccgagtgtgagtcttctattacc------t-----gg-gata B D Rabbit -----cacaagtcaga-----ttcttt-------gcaggctcttgagaata------------------- B D Human ----ctgcagcttcgg-----cttctc--------ttgctcccagagcggggtcttcg-----gcttgcc B D Chimp ----ctgcagcttcgg-----cttctc--------ttgctcccagagcggggtcttcg-----gcttgcc B D Bonobo ----ctgcagcttcgg-----cttctc--------ttgctcccagagcggggtcttcg-----gcttgcc B D Gorilla ----ctgcagcttcgg-----cttctc--------ttgctcctagagcggggtcttcg-----gcttgcc B D Rhesus ----ctgcagcttcgg-----cttctt--------ttggtcccagatcgggggcttcg-----gcttgcc B D Marmoset -ccgctgcagctttgt-----cttctc--------ttgctcccagagcggggtcctct-----gcttgcg B D Tarsier ----ttgcccctgcgg-----c-------------tggctcccggagcgcaggcctctgatccgcttgct B D Bushbaby ccctctgcaggttc-c-----ttccta--------ttgctcccagagcgccggcct-g-----gctggcc B D Tree shrew tc--cagcagcggtgg-----ttcctc--------ttcctcccagggctcaggcctcg-----gcatgca B D Malayan flying lemur cc--ctgcagcttcgg-----ctcccc--------ttgctcccagaccgcgctcctgg-----gcttgcc B D Pig cc--ctgaagctttga-----cttctc--------ttcatcccggagcccccgcttca-----aattgcc B D Cow cc--ctgaagcttcga-----ctcctc--------tagcccccggagccccggcctca-----ggttgc- B D Sheep cc--ctgaagcttcga-----ctcctc--------ttgccccc-gagccccggcgtca-----ggttgc- B D Horse cc--tag-----------------tta--------atgtccccaaacat----ccaag-----actcttc B D Dog cc--ctgaagtatcaa-----ctcctt--------ttgccacagaatctcgggcctca-----gtttacc B D Hawaiian monk seal cc--ctgaagcttcga-----ctcttt--------ttgccgcccaagctcgggcctca-----gtttgcc B D Hedgehog -t--ttgcagggtggg-----atgggg--------tgggtgggaa------------------------- B D Elephant ct--ctgcagctttgg-----cccatc--------ctcctcccagagtcctgtcaagg------------ B D Tenrec ac--gggta--cttgg-----tgcctc--------aaagcaccagagat---tcaggg------------ B D Pika ====================================================================== B D Zebrafish ====================================================================== B D X. tropicalis ====================================================================== B D Opossum ====================================================================== B D Chicken ====================================================================== B D Shrew ====================================================================== B D Chinese pangolin ====================================================================== B D Dolphin NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN Mouse atggg-cgctgaaag Rat atgag-tgctga--g GCF_003668045 atggg-tgctga--g Beaver gcgga-tgctta--g Squirrel tggga-tgctta--g Guinea pig acagg-taatta--a Rabbit ------tgttaa--- Human gcgga-tactta--g Chimp gcgga-tactta--g Bonobo gcgga-tactta--g Gorilla gcgga-tactta--g Rhesus gcgga-tactta--g Marmoset gtgga-tactta--g Tarsier gcgga-gactta--g Bushbaby gcgta-tactta--g Tree shrew gcagg-tactta--g Malayan flying lemur gcgga-tactta--- Pig gccccatgctta--g Cow ------cgctga--g Sheep ------cgctga--g Horse gcgcg-ctcctg--g Dog acgag-ttctta--g Hawaiian monk seal gcggg-ttctta--g Hedgehog --------------- Elephant --------------- Tenrec --------------- Pika =============== Zebrafish =============== X. tropicalis =============== Opossum =============== Chicken =============== Shrew =============== Chinese pangolin =============== Dolphin NNNNNNNNNNNNNNN Inserts between block 54 and 55 in window B D Pig 17bp B D Cow 6bp B D Sheep 6bp B D Horse 11bp Alignment block 55 of 340 in window, 56740294 - 56740300, 7 bps B D Mouse tggccca B D Rat tggtcca GCF_003668045 tggccca Beaver tggccca B D Squirrel tggccca B D Guinea pig cagccca B D Rabbit --gccaa B D Human tggccca B D Chimp tggccca B D Bonobo tggccca B D Gorilla tggccca B D Rhesus tggccca B D Marmoset tggccca B D Tarsier tggtcca B D Bushbaby ttgtcca B D Tree shrew cggtcca B D Malayan flying lemur cagaccc B D Pig tgagctg B D Cow tgctccc B D Sheep tgctccg B D Chinese pangolin tgtccca B D Dog tgtcccc B D Hawaiian monk seal tgtcccc B D Hedgehog tatct-- B D Elephant tgcccca B D Tenrec cacattc B D Horse ======= B D Pika ======= B D Zebrafish ======= B D X. tropicalis ======= B D Opossum ======= B D Chicken ======= B D Shrew ======= B D Dolphin NNNNNNN Alignment block 56 of 340 in window, 56740301 - 56740398, 98 bps B D Mouse aagtgc-ccaag-----------gttgatttattctgggcct----ccaa--gaatattc---------- B D Rat aattgc-ccaag-----------gttgattcattctgtgcac----ccaa--gaatattc---------- GCF_003668045 aaacat-ccaag-----------attgattcattctgtgctt----cccc--gga-atgc---------- Beaver aaacgcttctag-----------attgattcttccagggctc----ttaa--gaatgcactgagccaaga B D Squirrel cagcgt-caaag-----------aatgactctttgcgcgctt----tgagctgatagcgc---------- B D Guinea pig gaatgc-ctacg-----------actgattcttttcttgctc----tgga--ggatgtac---------- B D Rabbit gagcgc-ccagc-----------atc-----------cgcaa----cagc--gcgtgtgg---------- B D Human aaacac-ctaaa-------