Multiz Alignments of 35 Vertebrates

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Capitalize exons based on show bases

Place cursor over species for alignment detail. Click on 'B' to link to browser for aligned species, click on 'D' to get DNA for aligned species.
Alignment block 1 of 393 in window, 56745427 - 56745587, 161 bps B D Mouse actgcaa-agacca-gca------ggcagttgggaatc---------agtg--atggctttctggtac-a B D Rat acggcag-caaata-gcgtcagacagtagttgtgaatc---------agtc--atggcttcctggtac-a GCF_003668045 aaggcaa-aggcca-tca------ggcc----tgaacc---------agcc--atggcttcctgctgc-a Beaver aaggcaa-agagag-tca------ggcagttctggact--------aaaac--acaacttcctggtgc-a B D Squirrel aaggcaa-agaac--tca------ggcagttctggacc---------caa---acagtctcttggtgcaa B D Guinea pig aaggcag-aaaagagtca------ggcagttttgtacc---------aaa---acagtttcctggtgcaa B D Rabbit aaggcaa-ggagag-aca------ggcagttctggacc--------taaac--accccatcctggtgc-a B D Pika agggcaatggggag-atg------aggggttttggacc--------caaac--accctttcctggtac-a B D Human aaggcaa-agacag-aca------ggcagttctggacc--------aaaac--acagtttcctggtgc-- B D Chimp aaggcaa-agacag-aca------ggcagttctggacc--------aaaac--acagtttcctggtgc-- B D Bonobo aaggcaa-agacag-aca------ggcagttctggacc--------aaaac--acagtttcctggtgc-- B D Gorilla aaggcaa-agacag-aca------ggcagttctggacc--------aaaac--acagtttcctggtgc-- B D Rhesus aaggcaa-agacag-aca------ggcagttctggacc--------aaaac--acagtttcctggtgc-- B D Marmoset aaggcaa-aaacag-aca------ggcagttttgaacc--------aaaac--acagtttcctggtgc-- B D Tarsier aaggcaa-agagag-aca------ggcagctctggacc--------caaac--acagattcctggtgc-- B D Bushbaby aaggcaa-agagag-aca------ggcagtaatggacc--------aaaac--acagtttcttggtgc-- B D Tree shrew aaggc---agagag-aca------ggcagttttagacc--------aaa----acagtttcctggtgc-- B D Malayan flying lemur aaggtaa-agagag-aca------ggcagttctggatc--------aaaac--acagtttcctggtgt-- B D Pig aaggcaa-ggagag-att------ggcaattctgggcc--------aaggc--acagtttcctggtgc-- B D Dolphin aaggcaa-gaagag-act------ggcagttctgggcc--------aaaat--acagtttcctggtgc-- B D Cow aaggcaa-ggaaag-act------ggcagttctgggcc--------aaaat--cctgtttcctggtgc-- B D Sheep aaggcaa-ggaaag-act------ggcagttctgggcc--------aaaat--actatttcctggtgc-- B D Horse aaggcaa-agagag-act------ggcagttcagcacc--------aaaac--actgtttcctggtgc-- B D Chinese pangolin aaggc-----agag-act------ggcagttctgggcc--------aaaa---acggtttcctggtgc-- B D Dog aaggcaa-agagag-att------ggcagttctttgcc--------aaaat--acggtttcctggtgc-- B D Hawaiian monk seal aaggcaa-agagag-act------ggcagttctttgcc--------aaaac--gcagtttcctggtgc-- B D Hedgehog aaggcaa-agagaa-act------ggaagttgggggggggggaggcaaagc--acagcttcctggtgc-- B D Shrew aaggcaa-aaagag-aca------ggcagttctgggca--------aaaac--acaatttcctggtac-- B D Elephant aaggtaa---agag-ata------ggcagttctgggac--------aaaac--atggtttcctggtgc-- B D Tenrec aaagcaa-ctagag-aca------ggcacttctgggcc--------caaac--atgctttcttggtgc-- B D Opossum aagacga-agagat-ata------gaaagccctgagct--------ggaacagagagagcctcaatcc-- B D Zebrafish ====================================================================== B D X. tropicalis ====================================================================== B D Chicken ====================================================================== Mouse aaaataggagc-ac--aatc-tacttc-tttgga--------gggggagac--agt---g---------- Rat aaaatgggaac-ac--aatc-tttgtc-tttgga--------gggggagacaaaat---g---------- GCF_003668045 aaaatgagcctggc--aatc-tacttg-tttgga---------ggggaggcatggt---g---------- Beaver aaaatgggaac-ac--aa-c-tatttc-tttgga-------aggggtaggcatagt---g---------- Squirrel aaaataggagc-ac--aatc-tatttc-tttgga-------agggggagacatagt---g---------- Guinea pig aaaataggaac-ac--aa-----tttc-ttggga--------gggggggtaatggt---g---------- Rabbit aaaatgggaac-ac--agtc-taatc--tttgag--------gggggaggcatggt---g---------- Pika aaactgggagc-ccggagtt-tagtttgtttagt--------gtgggaggcacggt---g---------- Human -aaatggg-ac-tc--aatc-taattc-ttgggggtggtagaggaggagacatagt---g---------- Chimp -aaatggg-ac-tc--aatc-taattc-ttgggggtggtagaggaggagacatagt---gaaa------- Bonobo -aaatggg-ac-tc--aatc-taattc-ttgggggtggtagaggaggagacatagt---g---------- Gorilla -aaatggg-ac-tc--aatc-taattc-ttgggggtggtagaggaggagacacagt---gaaa------- Rhesus -aaatggg-ac-tc--aatc-caattc-ttgggggtggtagaggaggaaacatagt---g---------- Marmoset -aaatggg-ac-tc--aatc-taattc-ttgagggtggtagaggaggagacatagt---g---------- Tarsier -aaatagg-aa-tc--catt-taattc-ttggagg-------ggggggagcatagt---g---------- Bushbaby -aaatggg-aa-tc--aatc-tagttc-tttggggtt-----gggaaaaatatagt---g---------- Tree shrew -aaatgggaac-gc--aatc-taattc-tttgga-------ggagggaggcatagt---gaaaagacaaa Malayan flying lemur -gaatgggaac-ac--aatc-tagttc-tttggat------agggggaagcagagc-------------- Pig -aaactggaac-ac--aatc-taattc-tttgga------gagggggaggcagagt---g---------- Dolphin -aaattggaac-ac--aatc-taattc-tttgga------gagggggaggcatagt---g---------- Cow -aaattggaac-ac--aatcttaattc-ttcggc------gagggggaggcatagt---g---------- Sheep -aaattggaac-ac--aatcttaattc-tttggc------gagggggaggcatagt---g---------- Horse -aaattagaac-ac--aatc-taattc-tttgga------gaggg-gaggaataat---g---------- Chinese pangolin -aaattggaac-ac--aatc-taattc-tttgga------gagggagaggaatagt---g---------- Dog -aaattggaac-ac--aatc-tgattc-tttgga------gaggg---ggaggaag---g---------- Hawaiian monk seal -aaattggaac-ac--aatc-taattc-tttgga------ggggg---ggaatagg---g---------- Hedgehog -aaattggaac-cc--aatc-taatta-tttgga------gaaggggacccttaat---g---------- Shrew -aaaacggaat-ac--aacc-taattc-tttgga------gagggggaagcatagt---g---------- Elephant -aaataggaac-ac--aatc-----ta-atgggt-------gggggcggtcatagt--gg---------- Tenrec -aaataagaac-ac--attc--aattc-tttagg-------gggagagggcaaagtgggg---------- Opossum -aaatgagaac-ac--gacc-taatta-aattgt--------gggggaaactcatt---c---------- Zebrafish ====================================================================== X. tropicalis ====================================================================== Chicken ====================================================================== Mouse ------------------------------------------------------a--------------g Rat ------------------------------------------------------a--------------a GCF_003668045 ------------------------------------------------------a--------------a Beaver ------------------------------------------------------c--------------a Squirrel ------------------------------------------------------a--------------a Guinea pig ------------------------------------------------------a--------------c Rabbit ------------------------------------------------------a--------------a Pika ---------------------------------------------------------------------- Human ---------------------------------------aaaaaaaaaaaaaaaa--------------a Chimp ---------------------------------------aaaaaaaaaaaaaaaa--------------a Bonobo ---------------------------------------aaaaaaaaaaaaaaaa--------------a Gorilla ---------------------------------------aaaaaaaaaaaaaaaa--------------a Rhesus ----------------------------------------gaaaaaaaaaaaaaa--------------a Marmoset --------------------------------------------------gaaaa--------------a Tarsier ------------------------------------------------------a--------------c Bushbaby ----------------------------------------------------gac--------------g Tree shrew agaaaagaaaagaagagaaaaggaaagaaaaaagaaaagaaagaagagaagaaaa--------------g Malayan flying lemur -----------------------------------------------------aa--------------g Pig ------------------------------------------------------a--------------a Dolphin ------------------------------------------------------a--------------a Cow ------------------------------------------------------a--------------a Sheep ------------------------------------------------------a--------------a Horse ------------------------------------------------------a--------------a Chinese pangolin ------------------------------------------------------a--------------a Dog ------------------------------------------------------ggcggggggagagttg Hawaiian monk seal ------------------------------------------------------a--------------a Hedgehog -----------------------------------------------ggaaaaaa--------------a Shrew ------------------------------------------------------a--------------a Elephant ------------------------------------------------------a--------------a Tenrec ------------------------------------------------------a--------------a Opossum ---------------------------------------------------------------------a Zebrafish ====================================================================== X. tropicalis ====================================================================== Chicken ====================================================================== Mouse aataagctgac---agttgaaaagaaaactttccac-ctctggggaatcctgcaaccagaccaaatgtca Rat aataggctgac---agtagaaaaaaaaacttttcac-ctctgcatagtcctgcaaccagaccgaatgtca GCF_003668045 aataggctgac---agttgaaaagaaaacttttctt-ctctggggaaccctgcaatcagaccagatgtca Beaver aaaagattgat-agagctgaaaagaaaacttttctt-ccctaggga-ccctacaatcagaccaaatgtca Squirrel aaaaggctgat-ggagttgaaaagaaaacttttctt-ctctaggga-tcctacaatcagaccaaatgtca Guinea pig aaaaggctgac-agagatgaaaag--------tttt-ctctaggga-gcctacaatcggaccaactatca Rabbit aacagactgac-agagttgcaaagaaaaattttctt-cttgagaga-ttctgcagtcagaccaaatgtca Pika ------------------ggggggaaaaagtctcct-ctctggaga-ttctacagacagatcaaaagtca Human aaaaggctgac-agagtttaaaagaaaacttttcct-gcctaggga-tcctaccatcagagcaaatgtca Chimp aaaaggctgac-agagtttaaaagaaaacttttcct-gcctaggga-tcctaccatcagagcaaatgtca Bonobo aaaaggctgac-agagtttaaaagaaaacttttcct-gcctaggga-tcctaccatcagagcaaatgtca Gorilla aaaaggctgac-agagtttaaaagaaaacttttcct-gcctaggga-tcctaccatcagagcaaatgtca Rhesus aaaagactgac-agagttgaaaataaaacttttctt-gcctaggga-tattaccatcagagcaaacgtca Marmoset aaaaggctgac---agttgaaaagaaaacttttcct--cctaggga-ttctcccatcagagcgaatgtca Tarsier aaaaggctgac-agaattgaaaagaaaacttttctt-gcctaggga-tcctgcaaccagaccaaatgtca Bushbaby aaaaagctgac-agaattgaaaagcaaacttttctt-gcctcagga-tcctacaatcagactaaaggtca Tree shrew gaaaggttgac-agagttgaaaagaaaacttttctt-ccccaggga-tcttacagtcagaccaaaggtca Malayan flying lemur aaaaggctgat-agagttgaagagaaaacttttctt-ccctaggga-tcctacaatcagaccaaatgtca Pig aaaagactgac-agacttgaaaagaaaacttttcct-ccctaggga-tcctacaatcagaccaaatgtca Dolphin aaaagactgac-agagttgaaaagaaaacttttctt-ccctaggga-gcctacaatcagaccaaatgtca Cow aaaagactgac-agagttgaaaagaaaacctttctt-ccctaggga-gcctacaatcagaccaaatgtca Sheep aaaagactgac-agagttgaaaagaaaacctttctt-ccctaggga-acctacaatcagaccagatgtca Horse aaaagactgac-agagttgaaaagaaaactttcctt-ccctaggga-tcctacaatcagaccaaatgtca Chinese pangolin aaaagactgacaagagttgaaaagaaaacttttctt-ctctaggga-ttctacaatcagaccaaatgtca Dog aaaagac-------------------aaccgtgctt-ccctagggg-tcctatagtcagaccaactatcc Hawaiian monk seal aaaagactgac-------------agagttgatctt-ccctgggga-ttctacaatcagaccaagtatca Hedgehog aaaagactgac-agagttgaaaagaaaacttttctc-aactaggaa-tcctacagccagagcaaatatca Shrew aaaagactgac-agaattgaaaagaaaacttttttc-ccctaggga-ccctacaaaaagaccatatggta Elephant aaaagtctgac-agagttgaaaagaaaactttttttcccccagggactcctacaatcagagtaaatgtca Tenrec aaaagcctgat-ggagttgaaaagagaacttgtctt-ccctagggactcccacaagcagagcaaatgcca Opossum agggggtagac-aaaatttaaaagaaag---ttctt-ccacagaaa-tc--atagttagactaagtgtca Zebrafish ====================================================================== X. tropicalis ====================================================================== Chicken ====================================================================== Mouse g Rat g GCF_003668045 g Beaver g Squirrel a Guinea pig g Rabbit g Pika g Human g Chimp g Bonobo g Gorilla g Rhesus g Marmoset g Tarsier g Bushbaby c Tree shrew g Malayan flying lemur g Pig g Dolphin g Cow g Sheep g Horse g Chinese pangolin g Dog g Hawaiian monk seal g Hedgehog g Shrew g Elephant g Tenrec g Opossum g Zebrafish = X. tropicalis = Chicken = Inserts between block 1 and 2 in window B D Opossum 1545bp Alignment block 2 of 393 in window, 56745588 - 56745985, 398 bps B D Mouse gtcgggaagaatcggat--ta-tagaaggcagtggtgc-ctccacgtagatac-tgttgtctgtttgtga B D Rat gtagggaggaattggag--ta-gagaaggcagtgatgc-ttccgggtagataagtgttgtctatttgtga GCF_003668045 gtaggaaagcatgggat--ta-tgggagggagtgacgg-ttccttgtagacac-tgttgtttattttcga Beaver ttaggaaagtattggat--ta-tggagaggagcaactc-ttcattgtaggtat-tgctgttgattctgga B D Squirrel ttaggaaagtataggat--ca-tggagaggcacaactt-ttc---------at-tgttgttgattgtgga B D Guinea pig tcgaggaaatattggat--ta-tagagaagagcaactc-ttccctgttgctat-tgctgatgattctgga B D Rabbit ttggcaaaggattggct--tactggagag-agcaaatc-ttcatggcagatac-ttgtgttgactctggg B D Pika ctggaaaagtgttggat--tg-tggtg------aaaac-ttcactgtagtgac-tttggttggttctggg B D Human ttgggaaagtattggag--aa-tggaaaggagcaactt-ttcctttcagatat-tattg-tgattttgga B D Chimp ttgggaaagtattggag--aa-tggaaaggagcaactt-ttcctttcagatat-tattg-tgattttgga B D Bonobo ttgggaaagtattggag--aa-tggaaaggagcaactt-ttcctttcagatat-tattg-tgattttgga B D Gorilla ttgggaaagtattggag--aa-tggaaaggagcaactt-ttcctttcagatat-tattg-tgattttgga B D Rhesus ttgggaaagcattggac--aa-tggaaaggagcaactt-ttccttttagatat-tgttg-tgattttgga B D Marmoset ctgggaaagtactggag--aa-tggaaaggagcaactc-ttccttatagacat-tgttg-tgattttcga B D Tarsier ttaggaaatgtttgaag--ta-tggagaggagcagctgactcctcgtagatat-tgttgttgattttgga B D Bushbaby ttggaaaacgattggat--tg-tggaaaggaacaactc-ttccttgtagatgt-------tgattctgga B D Tree shrew ttggaaaggtattggat--ta------aggaacaactc-ttctttggagatag-tgtgcttgattctggg B D Malayan flying lemur ttgggaaagtattggat--ta-tggagaggagcaactc-ttcactatc-atat-tgttgttgattctcga B D Pig ctgaaaaggtattagat--ca-tggagaggagcaactc-ttcattctacatgt-tgt---tgattctaga B D Dolphin ttgaaaaagtattagat--ta-tggagaggagcaactc-ttcattctacatgt-tgt---tgattctgga B D Cow tcggaaaagtattagat--ta-tggagagaagcaaccc-ttcgttctacatat-ggt---tgattctggg B D Sheep ttggaaaagtattagat--ta-tggagagaagcaactc-ttcattctacatat-tgt---tgattctggg B D Horse ttggaaaagtattggct--ta-tggagaggagcaactt-ttcattctagatgt-tgt---tgattctgca B D Chinese pangolin ttggaaaagtattggattata-tggagagaagcaactc-ttcattctaga----tgt---cgattctgga B D Dog ctggaaaagtagtggattata-tggagaggagtaactc-ttcattctaga----tgt---tgattctgga B D Hawaiian monk seal ttggaaaagtaatggattata-tgcagaggagcaattt-tttattctagatgt-tgt---tgattctgga B D Hedgehog ctaggaaagtactgggt--ta--gcaaaggagcaactc-agaagggtgga----tgt---tgattctgaa B D Shrew atgggaaag-attgg----------------gcaactc-tttatactaga----------tgattctgga B D Elephant ttgagacagtatcggat--ta-tggtgaggagcaactc---aattccagatat-tgttgttaattctgag B D Tenrec tccagaaagtattggat--ta-tggttcgatgcaactc-ttaattccagatat-ggttgttgcttctgag B D Zebrafish ====================================================================== B D X. tropicalis ====================================================================== B D Opossum ====================================================================== B D Chicken ====================================================================== Mouse tgtcacctttaaacaaa------------------caggtttctgac-aaatctgtgcatat-aagaagg Rat tgtcacttttaaacaag------------------cagggttctgac-aaatctgtgcatgt-aaaaggg GCF_003668045 tgtcacctttagacaac------------------caggtttccgacaaaatctgtgcatat-aacaagg Beaver tgtcagctttaaacaac------------------ctggtttctgaa-aattttgtgaatat-gaaaaga Squirrel tgtcagcgttgaacaac------------------atggtttcagac-aaatctgtaaacac-agaatga Guinea pig gactggctctaagcaac------------------ttgcttactgac-aaatctgcgaacat-aaaacaa Rabbit tgccagctttaaacaag------------------gtggtt------------tgtgaacat-aaaatga Pika ---cagctttaggcagt------------------gtggtttctgac-acatctgtgaaagg-aaaatga Human tgccagctttaaacaac------------------ccagtttgtgac-acatttgtgattataaaaatga Chimp tgccagctttaaacaac------------------ccagtttgtgac-acatttgtgattataaaaatga Bonobo tgccagctttaaacaac------------------ccagtttgtgac-acatttgtgattataaaaatga Gorilla tgccagctttaaacaac------------------ccagtttgtgac-acatttgtgattataaaaatga Rhesus tgccagctttaaacaac------------------ccagcttgtgac-aaatttgtgattataaaaatga Marmoset tgccagctttaaacaac------------------ccagattctgac-aaatttgtgactat-aaaatga Tarsier caccaactttgaacaac------------------ctggtttctgac-taatctaggaatat-gaaatga Bushbaby tgtcagctttaaacaactagatttttagacaaccacatatttttgac-agatctgtgaatatgaa----a Tree shrew tgccaactttaaac-ac------------------taggtttctgac-aaatttgtgaacac-caaatga Malayan flying lemur tgccagctttaaacgac------------------ctagtttctgac-aaatctgtgaatat-aaaacga Pig tgccagctttaaacaac------------------ctgttttctgacaaaaattgtgaatat-aagatga Dolphin taccagctttaaacaac------------------ctgttttctgac-aagtctgtgaatat-aaaatga Cow tgccagctttaaacaac------------------ctgttttctgac-aaatctatgaatat-aaaatga Sheep tgccagctttaaacaac------------------ctgttttctgac-aaatctgtgaatat-aaaatga Horse tgccagctttaaacaac------------------ctgttttctgac-aaatctgtgaatct-aaaatga Chinese pangolin tgccagatttaaacgac------------------ctgttttctgac-aaatctgtgactat-aaaatgt Dog tgccagctttaaacgac------------------ctgttctctgac-aaatctatgaatat-aaaatga Hawaiian monk seal tgccagctttaaacaac------------------ctgttttctgac-aaatctgtgactat-aaaatga Hedgehog tgccagctt---acagc-------------------------ataac-ctattt---tctga-caagt-c Shrew tgccaactttaaacagc-------------------------ctaac-aaatttgtatatgt-aaaataa Elephant tgccagctttaaacaac------------------ctggtttttgac-aaatttgtgaatat-agca--- Tenrec tgccaacttcatacaac------------------ccaacttcagac-acatttgtgactag-ag----- Zebrafish ====================================================================== X. tropicalis ====================================================================== Opossum ====================================================================== Chicken ====================================================================== Mouse taatttct-----------------ccaagt-gactgctc--t--ttg-----aag-cacctgtatcaga Rat taatttct-----------------ccaaat-gaccgctc--t--ttg-----aaa-cacctgtatcaga GCF_003668045 taacttcc-----------------ctggat-ggccactc--t--ttg-----aag-gacctataccaga Beaver taattcctg----------------caaaac-aaccaccc--a--ttt-----gaa-gccctgtgtcaga Squirrel taatttctt----------------tgaaat-gatcaccc--c--ttt-----aaa-acactgttttgga Guinea pig ggatttgta----------------caaaat-gaacatcc--c--ttc-----taa-gctctttatcaga Rabbit tcatttcta----------------taaaat-gatcaccc--c--ctc-----aaa-gcactaggtcaca Pika tcatttcta----------------taaaat-gatcaccc--c--tac-----aaatgccctgtgg---a Human tcatttcta----------------caaaaatgctcactc--t--ttt-----aaa-gcactgtgttaga Chimp tcatttcta----------------caaaaatgctcactc--t--ttt-----aaa-acactgtgttaga Bonobo tcatttcta----------------caaaaatgctcactc--t--ttt-----aaa-acactgtgttaga Gorilla tcatttcta----------------caaaaatgctcacac--t--ttt-----aaa-gcactgtgttaga Rhesus tcatttctg----------------caaaaatgatcactc--t--ctt------aa-gcactgtgttaga Marmoset tgatttcta----------------caaaaatgatcactc--t--ctt-----aaa-gcact-tgtcaga Tarsier tcatttcta----------------caagat-----------------------ga-ttactgtgtcgga Bushbaby tcattt-tg----------------tagaaa--------------------------------tgtcaga Tree shrew taattt----------------------------ttactc--c--ttc-----aaa-gcactgcatcaga Malayan flying lemur tcatttcta----------------caaaac-gatcacac--c--ttc-----tga-gcactgtgtcaga Pig ttctttccataaatgatcatttctacaaaat-gactgccc--c--ttt-----gaa-gcactgtgttaga Dolphin ttagttctaccaatgatcgtttctacaaaat-gattgccc--c--ttt-----gaa-gcactgtatcaga Cow ttatttctaccaatgatctttcct-caaaat-gattgccctgc--ttt-----gaa-gctcagtatcaga Sheep ttatttctacaaatgatctttcct-caaaat-gattgccctgc--ttt-----gaa-gctcagtatcaga Horse ttat-------------------------at-gatcaccc--c--gtg-----gaa-gcactgtgtcaga Chinese pangolin ttatttctataaatgaacagttctacaaaat-gactgccc--c--taa-----gaa-gcac--ggtcaga Dog ttatttctagaagtgatcatttctacaaaat-gattgccc--t--ttca----aaa-gcactgtgtcaga Hawaiian monk seal ttatttctataagtgatcaattttac-aaat-gatcattt--c--tacaaatcaaa-gcactgtgtcaga Hedgehog ttagagtacaaaataatgatttctacaaaat-catgacca--ccatcc-----tgt-g------------ Shrew ttattttttcaaatgatcctttctacaaaag-gattttca--t--ttc-----tga-g------------ Elephant --ctttgta----------------taaaat-gatcatcc--t--gtt-----gaa-gcaccgtgtcaga Tenrec --ctttcta----------------cacagt-ggccatct--t--ttc-----tga-gcacagtgtcaga Zebrafish ====================================================================== X. tropicalis ====================================================================== Opossum ====================================================================== Chicken ====================================================================== Mouse ggg-------------aag---------------tg-tgt-aaaaccaag-tataaacggcactgtc-ac Rat tgg-------------gag---------------tg-tat-aaaatcaag-tataaaagacactgtc-aa GCF_003668045 tag-------------aag---------------tg-ttt-aaaatcaag-tttaaacgacaccctg-aa Beaver -ag-------------aag---------------tg-ttt-aaaatcaagatatagatg-cgttgtc-aa Squirrel tgg-------------aag---------------tg-ttt-aaaattaag-ctatggtggctttgtc-aa Guinea pig tga-------------aag---------------tg-ttt-aaaatcaaa-tc---atagttttgtc-aa Rabbit tgg-------------aag---------------tg-ttt-aaaaccaagttttaagtgccttggtc-ac Pika tggaaggaagtgcttaaag---------------tg-ttt-aaaaccagattataagggacttcctc-ac Human tgg-------------aag---------------tg-ttt-aaaatcaag-ttacaatggctttgcc-aa Chimp tga-------------aag---------------tg-ttt-aaaattaag-ttacaatggctttgcc-aa Bonobo tgg-------------aag---------------tg-ttt-aaaattaag-ttacaatggctttgcc-aa Gorilla tgg-------------aag---------------tg-ttt-aaaatcaag-ttacaatggctttgcc-aa Rhesus tgg-------------acg---------------tg-ttt-aaaatcaag-ttacaatggctttgcc-aa Marmoset tgg-------------aag---------------tg-ttt-aaaatcaag-ttacaatggctttgtc-aa Tarsier tgg-------------aagctagctatagtgacttg-tta-aaaattaag-ctatagtggctttgtc-aa Bushbaby tgg-------------aag---------------tg-ttt-aaaatcaag-ttacagtggctttgtc-aa Tree shrew tgg-------------aag---------------tg-ttt--aaatccag-ttataatggctttatc-aa Malayan flying lemur tgg-------------aag---------------tg-tttaaaaatcaag-ttatagtggctttgtc-aa Pig tgg-------------aag---------------ta-ttt-aaaatcaag-ttgtactagctttgtc-aa Dolphin tgg-------------aag---------------ta-ttt-aaaatcaag-ttgtagtagttttgtc-aa Cow tgg-------------aag---------------tgtttt-aagatc--g-tagtagtagctttgtc-aa Sheep tgg-------------aag---------------tg-ttt-aagatc--g-tagtagtagctttgtc-aa Horse tgc-------------aaa---------------tg-ttt-aaaatcaag-ttgtagtggctttgtc-aa Chinese pangolin tgg-------------aag---------------ta-ttt-ataatcaag-ttgtagaggctttgta-aa Dog tgg-------------aag---------------ta-ttt-aaactcaag-ttgtggtggctttgtc-aa Hawaiian monk seal tgg-------------aag---------------ta-ttt-aaaatcagg-ttgtagtggctttgtcaaa Hedgehog ----------------aag---------------tg-cat-ccaatcagg-ttgtagcagcgttgtc-aa Shrew ----------------ga-------------------------aatcaag-ttatagtggctttgtc-aa Elephant tgg-------------aag---------------ta-ttt-aaaatcaag-ttccagtggctttgtc-aa Tenrec tgg-------------aga---------------ta-ttt--aaatcagg-ttgccgaggcttggtc-aa Zebrafish ====================================================================== X. tropicalis ====================================================================== Opossum ====================================================================== Chicken ====================================================================== Mouse ac-----------ttctatgcgcggagtcca-----gaag-cagaactagat-gaa----tgtag----- Rat ac-----------ttctatacatggggccca-----gaag-cagaattagat-gca----tgcaa----- GCF_003668045 ac------------tctatacacaggaccaa-----ggag-caaaa-tatat-aca----tgtag----- Beaver ac-----------ttccacccgtacaaccca-----gaaa-caaaaatatatcgtt----ttcag----- Squirrel ac----gtcactcttcaatccctagctccaaaataggaaa-caaaaagacatcact----tgtgg----- Guinea pig at----gtggtccttctgcccataggacctg-----gaga-taataatatattgtg----tctag----- Rabbit ac----ttcactccttcatccgtaggactca-----aaga-cgaaaatatattg---------------- Pika at----ttcactccttcatctatagtaccca-----aaga-tgcgaatacatt----------------- Human ac------cactcctccacccataggaccca-----aaga-caaacatacattgtt----tgtag----- Chimp ac------cactcctccacccataggaccca-----aaga-caaacatacattgtt----tgtag----- Bonobo ac------cactcctccacccataggaccca-----aaga-caaacatacattgtt----tgtag----- Gorilla ac------cactcctccacccataggaccca-----aaga-caaacatacattgtt----tgtag----- Rhesus ac----ttcgctcctccatccataggaccca-----aaga-caaacatacattgtt----tgtag----- Marmoset ac----ttccatcctccacccataggaccca-----aaga-caaaaatacattgtt----tgtag----- Tarsier ac----ttcgctcctccacccatgggaccct-----aaaa-tgaaaatatattgct----tgtag----- Bushbaby ac----tttgctcctccacccaaagtaccca-----aaga-taaaaacatcatcttcaaatgtct----- Tree shrew ac------cactcctccacccgtagacccca-----tgga-cacaaatgcatttct----tggag----- Malayan flying lemur ac----tttgttcctccagtcattggaccca-----aaga-taaaaatacattgtt----cataa----- Pig ac----ttcggttctc-acccacaggttcca-----aaga-caa------actgct----catag----- Dolphin acttcattcagtcctctacccatgggtccca-----aaga-cca------actgct----catag----- Cow ac----ttcagtcgtccacccatgggtccca-----aaga-caa------actgct----cctag----- Sheep ac----ttccgtcctccacccatgggtccca-----aaga-caa------actgct----cctag----- Horse at----ttaggtcctacacccataggtccca-----aaga-caaaaacacattgct----tccag----- Chinese pangolin ac----attggtcctccacccataggtccca-----aaga-caaaaatacattgct----caaac----- Dog ac----ttcagtcctccacccataggtccca-----aaga-caaaaacacattgct----catag----- Hawaiian monk seal ac----ttcagtcctccacctataggttcca-----aaga-caaaaacatattgct----catag----- Hedgehog at----tttgttccttcatccctagagccca-----caga-gaaaaacaaattgct----gatag----- Shrew a------ttgcttctccacctatagaaccca-----caaattcaaaacaaactgct----gactg----- Elephant ac----ttcgctcctttacccacaggtacca-----ggca-caaaaatacattcct----tgtaatcttc Tenrec ac----ttgagtcctccatccataggtgcca-----aaca-caaaaatacattcct----ggtag----- Zebrafish ====================================================================== X. tropicalis ====================================================================== Opossum ====================================================================== Chicken ====================================================================== Mouse --------tc------------ttcaaa------------------------------------------ Rat --------tc------------ttcaaa------------------------------------------ GCF_003668045 --------tc------------ttcaaa------------------------------------------ Beaver --------tc------------ttcaaa------------------------------------------ Squirrel --------tc------------t--aag------------------------------------------ Guinea pig --------tc------------ttcaaa------------------------------------------ Rabbit ---------c------------ttcaaa------------------------------------------ Pika ---------------------------------------------------------------------- Human --------cc------------ttcaca------------------------------------------ Chimp --------cc------------ttcaca------------------------------------------ Bonobo --------cc------------ttcaca------------------------------------------ Gorilla --------cc------------ttcaca------------------------------------------ Rhesus --------cc------------ttcaca------------------------------------------ Marmoset --------cc------------ttcacc------------------------------------------ Tarsier --------cc------------ttcaaa------------------------------------------ Bushbaby --------cctctttgaaattattcaaa------------------------------------------ Tree shrew --------cc------------ttcaaa------------------------------------------ Malayan flying lemur --------tc------------ttcaaa------------------------------------------ Pig --------tc------------ttcaaa------------------------------------------ Dolphin --------tt------------ttcaaa------------------------------------------ Cow --------tt------------ttcaaa------------------------------------------ Sheep --------tt------------ttcaaa------------------------------------------ Horse --------tc------------tttaag------------------------------------------ Chinese pangolin --------tc------------tttaaa------------------------------------------ Dog --------tc------------ttcaaa------------------------------------------ Hawaiian monk seal --------tc------------ttcaaa------------------------------------------ Hedgehog --------tt------------ttcata------------------------------------------ Shrew --------tt------------ttcaga------------------------------------------ Elephant aaataccttc------------tttgaaattacacttggtcacaaaaaagatgccaatgattcaaaactt Tenrec --------cc------------tttaaaattacacctgatc----------------------------- Zebrafish ====================================================================== X. tropicalis ====================================================================== Opossum ====================================================================== Chicken ====================================================================== Mouse -----------------------------------------------------tatct--ttt---tt-- Rat -----------------------------------------------------tatct--ttt---ttc- GCF_003668045 -----------------------------------------------------tactt--ttc---tt-- Beaver -----------------------------------------------------tattt--cct---cttt Squirrel -----------------------------------------------------tatct--cct---tt-- Guinea pig -----------------------------------------------------tattt--cct---tttt Rabbit -----------------------------------------------------tacct--cct---cttt Pika ---------------------------------------------------------------------- Human -----------------------------------------------------tatct--ctt---t--- Chimp -----------------------------------------------------tatct--ctt---t--- Bonobo -----------------------------------------------------tatct--ctt---t--- Gorilla -----------------------------------------------------tatct--ctt---t--- Rhesus -----------------------------------------------------tatct--ctt---t--- Marmoset -----------------------------------------------------aatct--ctt---t--- Tarsier -----------------------------------------------------tagct--cct---tttg Bushbaby -----------------------------------------------------tatct--cctctat--- Tree shrew -----------------------------------------------------tatcc--cctcttt--- Malayan flying lemur -----------------------------------------------------tatct--cttcttt--- Pig -----------------------------------------------------tatcc--tct---cttt Dolphin -----------------------------------------------------tatct--tct---cttt Cow -----------------------------------------------------tatct--tct---cttt Sheep -----------------------------------------------------tatct--ttt---cttt Horse -----------------------------------------------------tatct--tcc---tttt Chinese pangolin -----------------------------------------------------tatct--tct---cttt Dog -----------------------------------------------------tatct--ttt---cttt Hawaiian monk seal -----------------------------------------------------tatct--ttt---cttt Hedgehog ------------------------------------------------------acctctctt---ctct Shrew -----------------------------------------------------tatcttattt---ttta Elephant cgctcctttacccacaggtaccaggcacaaaaatacattccttgtagtcttcaaatac--ctt---cttt Tenrec -------------------------------------tctctctctctctctctctct--ctc---tctc Zebrafish ====================================================================== X. tropicalis ====================================================================== Opossum ====================================================================== Chicken ====================================================================== Mouse ----------------------------------------------ccaatatg-----cataactg-ta Rat ---------------------------------------------ccccatatg-----ca-aactg-ta GCF_003668045 -----------------------------------------------cagtatg-----catgactg-ta Beaver aa----a-----attatacttggtcac-ttaaagtt-gccagtgattcaacatg-----cacaacta-ta Squirrel aa----a-----attttatttggtcac-ttaaagat-gccactaattcaatatg-----cacaacaa-tc Guinea pig aa----a-----attacacttggtcac-ttaaagaa-g--------tcagtg-----------------a Rabbit ga----aattacact----ttagtcac-ttaaagat-gccaatgatttaatatg-----gacaactc-tg Pika -------------------------------cgaat-gccagtgatcccatatg-----gactattcggg Human ga----a-----actatacctggtcac-tgaaaaat-gccaataattcaatatt-----ctcaaccc-ca Chimp ga----a-----actatacctggtcac-tgaaaaac-gccaataattcaatatt-----ctcaaccc-ca Bonobo ga----a-----actatacctggtcac-tgaaaaac-gccaataattcaatatt-----ctcaaccc-ca Gorilla ga----a-----actatacctggtcac-tgaaaaac-gccaataattcaatatt-----ctcaaccc-ca Rhesus ga----a-----actacacctggacac-cgaaaaat-gccaataattcaatatg-----cacaaccc-ta Marmoset gaaacta-----actatacctggtcac-tgaaaaat-ggcaatgattcaatatg-----cacaactc-ca Tarsier ga----a-----attatacctgggcac-tgaaaaat-gtcagtgactcagtatg-----cacaaacc-ta Bushbaby ga----a-----attactcctggccac-tgaaaaac-accagtgattcaatatg-----cacaaccc-ca Tree shrew aa----a-----attacact-ggtttc-tttaaaat-accaatgattcaatatg-----cacaaccc-tg Malayan flying lemur aa----a-----attacacc--ttcac-ttagagatggcaaaggattcaatatgcacaacacaacca-ta Pig ta----a-----aatgtacttgctcac-ttaaagat-gccaatgattcagtatg-----catacttt-ta Dolphin aa----a-----attctacttgctcac-ttaaagat-gccagtgattcaatatg-----tacacctc-ta Cow aa----a-----attgtacttgctcac-ttaaagat-gccgatgattcaacatg-----cacacctc-tt Sheep aa----a-----attgtacttgctcac-ttaaaggt-gccgatgatttaacatg-----cacacctc-tt Horse aa----a-----atggcactttgtcac-ttaaagac-gccagtgattcaatatg-----cacaaccc-ta Chinese pangolin aa----a-----attgcacttggtcac-ttaaagat-gccagtgattccatatg-----cacactcc-ta Dog aa----a-----actgcacttagtcat-ttaaggat-ggcagtgattcaagagg-----cacacttc-ta Hawaiian monk seal aa----a-----actgcactaagtcat-ttaaagat-ggcagtgattcaatagg-----cacacttc-ta Hedgehog aa----a-----actgtacttgattac-taagagat-gcaagcaattcactata-----cacaaccc-ta Shrew aa----a-----attgcacttggttat-tta-agat-gacagtgatttgatatg-----cacaacta-ta Elephant aa----a-----attacacttggtcacaaaaaagat-gccaatgattcaatatc-----cacaaccc-tc Tenrec ac----a-----cacacac---------acacacac-cccaatgatccaatatg-----cacaaact-tc Zebrafish ====================================================================== X. tropicalis ====================================================================== Opossum ====================================================================== Chicken ====================================================================== Mouse gatattattattattattt---------------------ggtctgtatttccttt--aagaacagagag Rat gatgttatgaaaatctttt-------aggg--------ggggtctgtatctccttt--aagaacagaaag GCF_003668045 gatactgtgacaatcaccttact-ctagaagt-t-tttgttgtttgtatctccttt--gagaacagaaaa Beaver ggtattgtggtaattaccttaca-ctatataa-t-tt---tctttgtgcttccttc--aagaacagaaag Squirrel gatattgtggtaatcaccttaca-ctatataa-t-tt---tctttgcatctccatc--aagaaataaaag Guinea pig tttggtatgtacaacatactgta-ctatgtag-g-tt---tccttacatctccagc--aagaaaagaaaa Rabbit tgtacagtagtaatcaccttata-acacataa-t-tt---tctttgcttttctatc--aagaacagagag Pika tgcgctgtagccagtaccttata-aggcataa-t-tt---gcttcacttgtctgtc--aagaatagaggg Human ggtattatagtaattactttaca-ccatacaa-t-tt---tctttgcatctccacc--aagaacagaaag Chimp ggtattatagtaattactttaca-ccatacaa-t-tt---tctttgcatctccacc--aagaacagaaag Bonobo ggtattatagtaattactttaca-ccatacaa-t-tt---tctttgcatctccacc--aagaacagaaag Gorilla ggtattatagtaattactttaca-ccatacaa-t-tt---tctttgcatctccacc--aagaacagaaag Rhesus ggtattatagtaattattttaca-ccatacaatt-tt---tctttgcatctccacc--aagaacagaaag Marmoset agtatcatagtaa-----ttaca-ccatacaa-t-tt---tctttgcatctccaac--aagaacagaaag Tarsier cgtattctagtaatctgtgtaca-ccatgcaa-t-tt---tctttgcatcttcatc--aagttcaggaag Bushbaby agtactgtggtaatcacttgaca-ccatataa-t-tt---tctttccatcttcatt--aagaagagaaag Tree shrew tatattgcggtaatcaccccaca-ccatataa-t-tt---tctttgtgtctttatg--aagaacagaaag Malayan flying lemur ggtgttgtggtaatcaccttaca-ccacagaa-t-tt---tctttgcatctctgtc--aagaacagaaag Pig ggta--------atcagtttaca-caatataa-t-tg---tctttgcatctctgct--aagaacataaag Dolphin ggtatcgtggtaatcagtttacgcccgtataa-t-tt---tctttgcatctctatt--aaaaacataaag Cow ggtattgtggtaatcggtttaca-tcatataa-t-tt---tctttgcgtctctata--aagagaataaag Sheep ggtattgtggtgatcggtttaca-tcatataa-t-tt---tctttgcggctctata--aagagcataaag Horse agtattgtggtaatcactttaca-ccatataa-t-tt---tcttcgcatctctgtt--aagaacataaag Chinese pangolin ggtattgtggtaatcagtttaca-ccctataa-t-tt---tctttgcaactctatt--aagaacataaag Dog ggtattgtggtcatcagtttaca-acatataa-t-tt---tctttatatctctattaaaaaaacataaag Hawaiian monk seal ggtattgtggtaatcagtttaca-gcatataa-t-tc---tctttgtatctctatt--aagaacataaag Hedgehog ggcattgtggtaagcagtttaca-ctgtataa-c-tg---ccttttcatttgtgtt--aggaatggaaag Shrew tgtattgtggtaatcgatatgca-tcataaaa-agtt---tctttgcatct-tatt--aaggacaataag Elephant agtattgtaataatcagtttaca-ccatataa-t-tt---tctttgcatctccatt--aagaacagaaag Tenrec agcattgtggtaattatttcaca-ccatataa-t-tt---tctttgcatctcc-tt--aagaactgaaag Zebrafish ====================================================================== X. tropicalis ====================================================================== Opossum ====================================================================== Chicken ====================================================================== Mouse tttggcagatggctt-ggct----ttgct-cttttt-tttttaaatgttaaattctactttcattttctt Rat attggtaga-----t-ggtt----ttgct-cccttt-ctt---aacgttaaattctactttcattttctt GCF_003668045 ataggcaca-----t-ggtt----tcatc-cctttt-ctt---aa-attgaattttactttca------- Beaver ggtaagtta-----t-gact----ttact-cctttc-ctt---aacactgaattctactttcattttctt Squirrel ggtaactgg-----t-ggct----tcccc-cctttt-ctt---aatacttgattctactttcattt---- Guinea pig ggtaac--------t-gttt----taact-cctttt-ctt---aacacttaattttacttccattttctt Rabbit gataaccta-----t-ggct----ttctt-cccttc-ctt---aacatttaattctactttcgttttgtt Pika gataactga-----t-ggct----ttgtt-ccattt-c----------ttatttctactttcgttttctt Human aataactga-----t-ggca----ttaca-c------ctt---aacacttaattttactttcattttctt Chimp aataactga-----t-ggca----ttaca-c------ctt---aacacctaattttactttcattttctt Bonobo aataactga-----t-ggca----ttaca-c------ctt---aacacctaattttactttcattttctt Gorilla aataactga-----t-ggca----ttaca-c------ctt---aacacttaattttactttcattttctt Rhesus aataacaga-----a-agaa----aaaaa-t--------------aacttaattttactttcattttctt Marmoset aataactga-----t-gaca----ttaca-c------ctt---aacacttaattctactttcattttctt Tarsier aataactca-----t-ggta----tcaca-c------tgt---aacacttaattctactttcattttctt Bushbaby ggcaactga-----t-ttct----ttact-cctttt-ctt---aacacttcattctactttcattttctt Tree shrew ggtaactga-----tgggtt----ttact-cctttt-ctt---aatgcttaattccactttcattttctt Malayan flying lemur gataagtga-----t-ggct----ttgct-cctttt-ctt---aacacttaattctactttcattttctt Pig gagagctga-----t-ggct----ttact-tcttttccaa---aatacgtaattctactatcattttctt Dolphin gatagctga-----c-ggct----ttact-tcttttccaa---aatactta----tactttaattatcct Cow gatagttga-----c-agct----ttagc-tcttttccaa---aacacttaattccactttaattttcct Sheep catagttga-----c-agct----ttacc-tcttttccaa---aacacttaattcctctttaattttcct Horse gataactga-----t-gattttacttact-cctgtttcaa---aacacttaatcctactttcattttctt Chinese pangolin g-taact-a-----t-ggct----ttaca-ccttttttag---cacacttaattctactttcattttctt Dog gataactga-----c-agct----ttact-cctttttcaa---aacccttaattctaccttcattttctt Hawaiian monk seal gataaatga-----c-agcg----ttactccctttttaaa---aacacttaattctgccttcatttcctt Hedgehog aataacgga-----c-gatt----ttact-cctttttcaa---aacacttgattctac-----tcctctt Shrew gaaa----a-----t-tatt----ttact-cctttttcaa---aacaattaatttga------------- Elephant gataactga-----t-ggct----tgact-cctttt-tta---aacacttaatagtattttctgtttctt Tenrec ttcaactaa-----t-ggc-------------------ca---aacacttcactctacttgcactggttt Zebrafish ====================================================================== X. tropicalis ====================================================================== Opossum ====================================================================== Chicken ====================================================================== Mouse aaca-ttttatttca Rat taca-ctttatttca GCF_003668045 --------------- Beaver aacc-tcttatttca Squirrel -------ttatttca Guinea pig aaca-ttttatttaa Rabbit aacc-ttgtattcaa Pika aacc-tttttttc-- Human aacc-t---atttca Chimp aacc-t---atttca Bonobo aacc-t---atttca Gorilla aacc-t---atttca Rhesus aacc-t---atttca Marmoset aacc-g---atttca Tarsier aagc-gttaatttca Bushbaby aacc-ttttatttca Tree shrew aaca-ttttatttca Malayan flying lemur aacc-ttttattcca Pig accc-ttttattgca Dolphin aacc-ttttgtttca Cow aacc-ttttgtttca Sheep aacc-ttttgtttca Horse aatc-gtctgtttca Chinese pangolin aacctttttatttca Dog aac--ttttatttca Hawaiian monk seal aact-ttttatttca Hedgehog agcg-tttca----- Shrew --------------- Elephant aacc-ttttatttct Tenrec gcac-ttttattttc Zebrafish =============== X. tropicalis =============== Opossum =============== Chicken =============== Inserts between block 2 and 3 in window B D Shrew 63bp Alignment block 3 of 393 in window, 56745986 - 56746020, 35 bps B D Mouse ttttttctttctga------------------------------------tgtttta----aaaaaa-a- B D Rat ttttctctatctga------------------------------------tgcctaa----aaaaaaga- GCF_003668045 ---tctctttctga------------------------------------tacttaa----aaac---a- Beaver ttttttctgcctta------------------------------------tacttga----aaaag--c- B D Squirrel ttttctctt----a------------------------------------tacttaa----aaaaa--a- B D Guinea pig ttttctcttccttg------------------------------------tccttaa----aaaaaa-a- B D Rabbit ttc-----------------------------------------------tttttaa----a------a- B D Pika ---------------------------------------------------ccttta----a------a- B D Human ttttctctttcttg----------------------------tatatacatttttta----aa-----c- B D Chimp ttttctctttcttg----------------------------tatatatatatttta----aa-----c- B D Bonobo ttttctctttcttg----------------------------tatatatatttttta----aa-----c- B D Gorilla ttttctctttcttg----------------------------tatatatatatttta----aa-----c- B D Rhesus ttttctctttcttg----------------------------tatatacatatttga----aa-----ct B D Marmoset ttttctctttcttgtatatatatatatacaaatatatatatatatatatatatttaa----aa-----c- B D Tarsier ttttctctttttcg----------------------------tatgcat-ttttaaa----ag-----c- B D Bushbaby ttttctctgtcttg----------------------------tatatg--tttttaa----aa-----c- B D Tree shrew catt---tttcttg----------------------------tat-----taaaaaaaaagaa-----t- B D Malayan flying lemur ctttctctttcttg----------------------------tgt-----tttttaa----aa-----c- B D Pig ---------------------------------------------------------------------- B D Dolphin ---------------------------------------------------------------------- B D Cow ---------------------------------------------------------------------- B D Sheep ---------------------------------------------------------------------- B D Horse ---------------------------------------------------------------------- B D Chinese pangolin ---------------------------------------------------------------------- B D Dog ---------------------------------------------------------------------- B D Hawaiian monk seal ---------------------------------------------------------------------- B D Hedgehog ---------------------------------------------------------------------- B D Elephant ---------------------------------------------------------------------t B D Tenrec ---------------------------------------------------------------------t B D Zebrafish ====================================================================== B D X. tropicalis ====================================================================== B D Opossum ====================================================================== B D Chicken ====================================================================== B D Shrew ====================================================================== Mouse ----------ccattct----------------------------------- Rat ----------acattct----------------------------------- GCF_003668045 ----------cctttct----------------------------------- Beaver ----------cccatct----------------------------------- Squirrel ----------acactgt----------------------------------- Guinea pig ----------catctcc----------------------------------- Rabbit ----------accctct----------------------------------- Pika ----------tccctct----------------------------------- Human ----------tctttca----------------------------------- Chimp ----------tctttca----------------------------------- Bonobo ----------tctttca----------------------------------- Gorilla ----------tctttca----------------------------------- Rhesus ----------tttttca----------------------------------- Marmoset ----------tctttta----------------------------------- Tarsier ----------cctgtct----------------------------------- Bushbaby ----------tctt-------------------------------------- Tree shrew ----------gacctct----------------------------------- Malayan flying lemur ----------cctttct----------------------------------- Pig -------------ttga----------------------------------- Dolphin -------------ttga----------------------------------- Cow -------------ttga----------------------------------- Sheep -------------ttga----------------------------------- Horse -------------ttaa----------------------------------- Chinese pangolin -------------ctaa----------------------------------- Dog -------------ttaa----------------------------------- Hawaiian monk seal -------------ttaa----------------------------------- Hedgehog ------------cttaa----------------------------------- Elephant gta----------ttaaaaaaaaaaaaa--------------------ccct Tenrec atatgtgtcggatttgaaaacagcagaagcagtagcaacaaaacccttctct Zebrafish ==================================================== X. tropicalis ==================================================== Opossum ==================================================== Chicken ==================================================== Shrew ==================================================== Inserts between block 3 and 4 in window B D Pika 4bp B D Pig 10bp B D Dolphin 10bp B D Cow 10bp B D Sheep 10bp B D Horse 24bp B D Chinese pangolin 13bp B D Dog 20bp B D Hawaiian monk seal 20bp B D Hedgehog 7bp Alignment block 4 of 393 in window, 56746021 - 56746056, 36 bps B D Mouse t--tata-attctacc----attaa-----c----aatta-cggtat-------ttccag B D Rat t--taca-attccacc----gttga-----c----aatcg-cggtat-------ttccag GCF_003668045 t--tttt-atttattt----attag--ttct----agtca-gggaacaagcttgtttcac Beaver c--tatg-actctgcc----acttgactggc----actta-tggtat-------ttacaa B D Squirrel c--tata-tttctgcc----actgg-----c----actaa-tgctat-------ttacag B D Guinea pig a--taag-accctgcc----attgc-----c----gctca-tggtat-------tcacag B D Rabbit a--taaa-ccccattcct--actga-----t----acttg-tggcat-------tcacag B D Pika g--taaa-tcccactcctgaactg------t----acttg-tggcat-------tcagag B D Human g--gaaa-accctgcc----actaa-----c----accca-tggcat-------gtatag B D Chimp g--gaaa-accctgcc----actaa-----c----accca-tggcat-------gtatag B D Bonobo g--gaaa-accctgcc----actaa-----c----accca-tggcat-------gtatag B D Gorilla g--gaaa-accctgcc----actaa-----c----accca-tggcat-------atatag B D Rhesus g--gaaa-accctgcc----actaa-----c----accca-tggcat-------gtatag B D Marmoset g--gata-accctgcc----actga-----c----accca-tgacat-------gtagag B D Tarsier c--tata-accctgcc----actga-----c----accca-tggcat-------gaataa B D Bushbaby ---aaca-accctgcc----agt----------------a-tggaat-------acatag B D Tree shrew c--tcta-accctgcc----actgc-----t----actgg-aggcgt-------ttatag B D Malayan flying lemur t--tata-atcctgct----attga-----c----attcg-tggcat-------ttatag B D Pig ctatata-acctcatc----actaa-----c----actgg-tggcat-------ttacag B D Dolphin c--tata-accttacc----tctga-----c----actgg-tggcat-------ttacag B D Cow c--tatg-accttacc----tctga-----c----actgg-tggcac-------ttacag B D Sheep c--tatg-accttacc----tctga-----c----actgg-tggcac-------ttacag B D Horse c--tcta-accttacc----actga-----c----atagg-tggcat-------ttacag B D Chinese pangolin c--tctatacctcact----accaa-----c----actgg-aggtat-------ttacag B D Dog c--taca-accttgcc----actga-----c----actggttggcat-------ttactg B D Hawaiian monk seal t--tata-accttacc----actga-----c----gctgg-tggcat-------ttacag B D Hedgehog t--cata-acttcaca----agtga-----tactcattca-cggcat-------ttt--- B D Shrew t--tagc-cttttacc----catga-----t----cttta-tggcat-------tct-ac B D Elephant c--tgta-tccctgcc----actgc-----c----atttg-tggggt-------ttag-- B D Tenrec c--ttta-accctgcc----actgc-----t----gttgt-tgcggg-------gcag-- B D Zebrafish ============================================================ B D X. tropicalis ============================================================ B D Opossum ============================================================ B D Chicken ============================================================ Inserts between block 4 and 5 in window B D Guinea pig 43bp B D Rabbit 12bp B D Pika 12bp B D Pig 1bp B D Dolphin 1bp B D Cow 1bp B D Sheep 1bp B D Horse 1bp B D Chinese pangolin 1bp B D Dog 1bp B D Hawaiian monk seal 1bp B D Hedgehog 1bp B D Shrew 1bp Alignment block 5 of 393 in window, 56746057 - 56746067, 11 bps B D Mouse aatta---------------ctat----tt B D Rat acttag--------------ttat----tt GCF_003668045 atgtaa--------------gtcc----ct Beaver tagcag--------------ttacaggatt B D Squirrel tgtcagcgacaga-----atttat----tt B D Rabbit ------------attttttttttt----tt B D Pika ------------g-----attgtt----tc B D Human -----------------tggtaat----t- B D Chimp -----------------tggtaat----t- B D Bonobo -----------------tggtaat----t- B D Gorilla -----------------tggtaat----t- B D Rhesus -----------------tggcaat----t- B D Marmoset -----------------tggtaat----t- B D Tarsier -----------------tggtcac----t- B D Bushbaby -----------------tgttaat----t- B D Tree shrew -----------------tggtaat----t- B D Malayan flying lemur -----------------tggtaat----t- B D Pig ------------------ggtaat----t- B D Dolphin ------------------gataac----t- B D Cow ------------------ggtaac----t- B D Sheep ------------------ggtaat----t- B D Horse ------------------ggtaac----t- B D Chinese pangolin ------------------ggtaac----t- B D Dog ------------------ggtaac----t- B D Hawaiian monk seal ------------------ggtaat----t- B D Hedgehog ------------------gggtgt------ B D Shrew ------------------ggtaac------ B D Elephant ---------------agtggt--------- B D Tenrec ---------------agtggt--------- B D Guinea pig ============================== B D Zebrafish ============================== B D X. tropicalis ============================== B D Opossum ============================== B D Chicken ============================== Inserts between block 5 and 6 in window B D Human 13bp B D Chimp 13bp B D Bonobo 13bp B D Gorilla 13bp B D Rhesus 14bp B D Marmoset 10bp B D Tarsier 13bp B D Bushbaby 14bp B D Tree shrew 41bp B D Malayan flying lemur 14bp B D Pig 2bp B D Dolphin 2bp B D Cow 2bp B D Sheep 2bp B D Horse 2bp B D Chinese pangolin 2bp B D Dog 2bp B D Hawaiian monk seal 2bp Alignment block 6 of 393 in window, 56746068 - 56746087, 20 bps B D Mouse aaaaaca------------------atatgcatataa---c B D Rat aaaaaga------------------ataggcatatac---c GCF_003668045 aaaaacacctttctttagctgacccattaacattcac---g Beaver aaaaaaa---------------ataatgtgcacataa---c B D Squirrel ctgagtc------------------atacacatataa---c B D Rabbit ttgagtc------------------agaggcacaaaa---c B D Pika aaaagtc------------------agaggtgcataa---c B D Human ttaagtc------------------atatgcacatat---c B D Chimp ttaagtc------------------atatgcacatat---c B D Bonobo ttaagtc------------------atatgtacatat---c B D Gorilla ttaagtc------------------atatgcacatat---c B D Rhesus ttaagtc------------------atatgcacatat---c B D Marmoset ---agtc------------------atatgcacttat---c B D Tarsier tt--gtc------------------acgtgcacatatcagc B D Bushbaby ttgaatc------------------atatgtaggtga---c B D Malayan flying lemur ttgagtc------------------atacgcatattt---a B D Pig ----------------------------agtatttat---t B D Dolphin ----------------------------agtatttat---t B D Cow ----------------------------actatttgt---t B D Sheep ----------------------------actgtttgt---t B D Horse ----------------------------agtatttgt---t B D Chinese pangolin ----------------------------catatttat---t B D Dog ----------------------------agtctttat---t B D Hawaiian monk seal ----------------------------agtatttac---t B D Hedgehog ------------------------------tacttat---t B D Shrew ------------------------------tatttat---c B D Elephant ------------------aattgtaaaatttattt------ B D Tenrec ------------------ggcggtgaaatgcattt------ B D Guinea pig ========================================= B D Tree shrew ========================================= B D Zebrafish ========================================= B D X. tropicalis ========================================= B D Opossum ========================================= B D Chicken ========================================= Inserts between block 6 and 7 in window B D Pig 29bp B D Dolphin 998bp B D Cow 1bp B D Sheep 2bp B D Horse 1bp B D Chinese pangolin 1bp B D Dog 1bp B D Hawaiian monk seal 1bp B D Hedgehog 1bp B D Shrew 1bp Alignment block 7 of 393 in window, 56746088 - 56746103, 16 bps B D Mouse tctaaattatatgcat------ B D Rat ctta------------------ GCF_003668045 gtttaattaaaaatat------ Beaver cttc------------------ B D Squirrel ctca------------------ B D Rabbit caca------------------ B D Pika cata------------------ B D Human a--------------------- B D Chimp a--------------------- B D Bonobo a--------------------- B D Gorilla a--------------------- B D Rhesus a--------------------- B D Marmoset a--------------------- B D Tarsier a--------------------- B D Bushbaby actg------------------ B D Malayan flying lemur a--------------------- B D Cow -------ttgagtcat------ B D Sheep -------ttgagtcat------ B D Horse ------tttgagtcat------ B D Chinese pangolin ------tttgaatc-------- B D Dog ------tttaagttat------ B D Hawaiian monk seal ------tttaagttat------ B D Hedgehog ------cttgagtcac------ B D Shrew ------tttgagtcat------ B D Elephant ------tctgagttatatgcat B D Tenrec ------tctaactcttatacac B D Guinea pig ====================== B D Tree shrew ====================== B D Zebrafish ====================== B D X. tropicalis ====================== B D Opossum ====================== B D Chicken ====================== B D Pig ====================== B D Dolphin ====================== Inserts between block 7 and 8 in window B D Elephant 114bp Alignment block 8 of 393 in window, 56746104 - 56746122, 19 bps B D Mouse atatataaatatgcat--ata B D Rat ------------------ctt GCF_003668045 gcatatagactta-----ctc Beaver ------------------cat B D Squirrel ------------------tat B D Rabbit ------------------cgg B D Pika ------------------caa B D Human ------------------cat B D Chimp ------------------cat B D Bonobo ------------------cat B D Gorilla ------------------cat B D Rhesus ------------------cat B D Marmoset ------------------cat B D Tarsier ------------------cat B D Bushbaby ------------------caa B D Malayan flying lemur ------------------tgt B D Cow atgca-------------cat B D Sheep atgca-------------cat B D Horse atgca-------------cat B D Chinese pangolin atgca-------------caa B D Dog gtgca-------------cat B D Hawaiian monk seal atgca-------------cat B D Hedgehog a--ca-------------cat B D Shrew atgca-------------cat B D Tenrec --------acaaaccttacgt B D Guinea pig ===================== B D Tree shrew ===================== B D Zebrafish ===================== B D X. tropicalis ===================== B D Opossum ===================== B D Chicken ===================== B D Elephant ===================== B D Pig ===================== B D Dolphin ===================== Inserts between block 8 and 9 in window B D Human 5bp B D Chimp 5bp B D Bonobo 5bp B D Gorilla 5bp B D Rhesus 5bp B D Marmoset 5bp B D Tarsier 5bp B D Bushbaby 5bp B D Cow 9bp B D Sheep 9bp B D Horse 10bp B D Chinese pangolin 10bp B D Dog 10bp B D Hawaiian monk seal 10bp B D Hedgehog 10bp B D Shrew 10bp Alignment block 9 of 393 in window, 56746123 - 56746137, 15 bps B D Mouse atttagcaggcagag B D Rat atttagcaggcagtg GCF_003668045 atttagcaggcagag Beaver atttaatgcatagag B D Squirrel atttaatgtgtacag B D Rabbit atttagtgtgtggag B D Pika atttaatgtctaggg B D Human -----atgt------ B D Chimp -----atgt------ B D Bonobo -----atgt------ B D Gorilla -----atgt------ B D Rhesus -----atgt------ B D Marmoset -----atgt------ B D Tarsier -----acgt------ B D Bushbaby -----aggc------ B D Tree shrew atttaatgt------ B D Pig atttaatgtgcagag B D Cow atttaacgtgtagag B D Sheep atttaatgtgtagag B D Horse atttagtgtgtagag B D Chinese pangolin atttaacatgtagac B D Dog atttaacgtgtagac B D Hawaiian monk seal acttaatgtgtagac B D Hedgehog atttaatacgtagag B D Shrew acttattgtatggag B D Tenrec atttcgcgt------ B D Guinea pig =============== B D Zebrafish =============== B D X. tropicalis =============== B D Opossum =============== B D Chicken =============== B D Elephant =============== B D Dolphin =============== B D Malayan flying lemur --------------- Alignment block 10 of 393 in window, 56746138 - 56746170, 33 bps B D Mouse gcagaagcagagaaagta-----------agga---agtcctgta----------gg B D Rat gc----------gatgta-----------gggt---agtcctgaa----------tc GCF_003668045 ------------aacgtagg---------gggg---ggtcccata----------ta Beaver atag--------catgca-----------gggt---agtttcatg----------ca B D Squirrel agagc-------acagaa-----------gaat---agtcccttg----------ct B D Guinea pig gtagaggcaaagcttgca-----------gagt---agacctagg----------ca B D Rabbit ------------------agggagcatcagggt---agtcctatg----------ta B D Human gtagaggtagtgtatcaa-----------gggg---agccctatg----------ca B D Chimp gtagaggtagtgtatcaa-----------gggg---agccctatg----------ca B D Bonobo gtagaggtagtgtatcaa-----------gggg---agccctatg----------ca B D Gorilla gtagaggtagagtatcaa-----------gggg---agccctatg----------ca B D Rhesus gtagaggtagagtatcaa-----------gggg---agccctatg----------ca B D Marmoset gtagaggtagagtatcaa-----------gggg---agccctatg----------ca B D Tarsier gtagccacagagaaccca-----------gggg---ggtcccttg----------ca B D Bushbaby agagagctagggtaccca-----------ggct---aggc--agg----------ca B D Tree shrew gctgagatacagcagcaa-----------gggc---agtcc---------------- B D Malayan flying lemur gtagagatagagcatcaa-----------gggt---cgtcctatg----------ca B D Pig ------atggagcatcaa-----------gggt---agtcacaca-cggtagacgca B D Cow ------atagagcgcgga-----------gggt---agt------------------ B D Sheep ------atagagcacgaa-----------gggt---agtcaca------------ca B D Horse ------atagagcatcaa-----------gggtttgacccacacagtacac-----a B D Chinese pangolin ------atagagcattaa-----------gggt---agtcacacattaaattatgaa B D Dog ------atagagcattaa-----------gggc---agtcacata-tgaattacgca B D Hawaiian monk seal ------atagagcatcaa-----------aggt---agtcacata-taaattatgca B D Hedgehog ------ctcaagtatcaa-----------gggt---agtcacaca-ggggttatgta B D Shrew ------ct--agtagcaa-----------gg--------------------tatgta B D Tenrec -------------------------------------gtcctagg----------ct B D Pika --------------------------------------------------------- B D Zebrafish ========================================================= B D X. tropicalis ========================================================= B D Opossum ========================================================= B D Chicken ========================================================= B D Elephant ========================================================= B D Dolphin ========================================================= Alignment block 11 of 393 in window, 56746171 - 56746227, 57 bps B D Mouse cacacaacgtgg-gaatctatgtacttagattttgcatatgtattgtg-----ggcatcactt B D Rat catacaatgcgg-gaatctgtgtacttacattttgcataggtattgtg-----ggcatcgctc GCF_003668045 cacacaacgtgg-agatctgtgcatggatattttgcatgcgcattgtg-----ggcgtcattt Beaver cacagaaggtgg-aagtctatgtacagatactttgcatgtgtattgtg-----ggcatcattt B D Squirrel caaacaagttgg-aaatct-------tgcattttgcatgtgtattgtg-----tgcatcattt B D Guinea pig cacacaaggcag-agatccacgcatgtatattttgcacgtgtattgtg-----cacatcattt B D Rabbit cacacaaggtgg-aaatctgtgcacatatattttgcatgtgtattgtg-----ggcatcgttt B D Pika -----------------------------attttgcacgcgcattgtg-----ggcatccttg B D Human cacacaaagcag-aaatctgtgcatgtatattttgcac-tgtatcgtg-----ggaataattt B D Chimp cacacaaagcag-aaatctgtgcatgtatattttgcac-tgtatcgtg-----ggaatagttt B D Bonobo cacacaaagcag-aaatctgtgcatgtatattttgcac-tgtatcgtg-----ggaatagttt B D Gorilla cacacaaagcag-aaatctgtgcatgtatattttgcac-tgtatcgtg-----ggaataattt B D Rhesus cgcacaaagcag-aaatctgtgcacgtatattttgcac-cgtatcgtg-----ggaataattt B D Marmoset catacaaagcag-aaatctgtgaacatatcttttgcac-tgaattgtg-----ggaatcattt B D Tarsier cacacaaagcag--aatctacgcatgtatattctgcatgcgtattgtg-----ggcatcgttt B D Bushbaby ccctcaaaacag-aaatctatgcacatatattttgcatgtatattatg-----gacatcgttt B D Tree shrew cccacaaggcag-acacccactccggtgtagtctgcatgtgtattacg-----ggcatcattt B D Malayan flying lemur cacccaaggtag-aaatctatgcatgtgtattttgcatgtgtattgtg-----ggcatcgt-- B D Pig cacaggaggcag-aaacctacacacctatgttttgca-------tgtg-----ggcatccttt B D Cow ---------cac-acacctatgcatttctgctttgcatgtatattgtg-----ggcatccttt B D Sheep caaggtaggcac-acacctatgcactcatgctttgcatgtatattgtg-----ggcatccttt B D Horse tacacaaggcagaaaacctatgcacttatattttgcatatgtattgca-----ggcatcattt B D Chinese pangolin cacacaaggcag-aaacctatggatgtacattttgcatgtgtgctgtg--------atcattt B D Dog cacacaagacaa-a---ctacgcatgtctattttgcgtgtgtattgtg-----ggcatcatgc B D Hawaiian monk seal cacacaagacaa-a---ctatgcatgtacattttgcatgtgcattgtg-----ggtatcttgt B D Hedgehog cacgcagg-cag-gaatctatgcaggtatattgtgtgtgtatattgtg-----ggcatctttt B D Shrew cacacaggacag-aagcctttgcagggatagtttgcatgtgtattgtgcatgtggcatcattt B D Elephant tactctaggcag-aaacctatgcacgtgtacttggcatgtgtattgta-----ggcaacgttt B D Tenrec taccttctgcag-aaaccgaagcaagcagactttgcatgtatattgta-----ggcttcggtt B D Zebrafish =============================================================== B D X. tropicalis =============================================================== B D Opossum =============================================================== B D Chicken =============================================================== B D Dolphin =============================================================== Alignment block 12 of 393 in window, 56746228 - 56746737, 510 bps B D Mouse agt--tatttgtttgcaaaggactttgcgggtc-ttttgttctgtcttattgacatagctatcagatccc B D Rat agt--tatttgtttgcaaaggactttgcgggcc-ttttgttctgtcttattgacatagctatcagatccc GCF_003668045 agt--tatttgtttgcaaaggactttgcaggtc-ttttgttctgtcgtgttgacagaactatcagatccc Beaver agt--tatttgtttgtaaaggactttgcaggtc-ttttgttctgtc-tattgacataagtaccagatccc B D Squirrel agg--tatttgtttgcaaaggactttgcaggtc-tttcgccctatt-tgttgacataagtaccagatccc B D Rabbit agt--tatttgtttgcaaaggactttgcagat--ctttgttttgtt-tcttggcgtcagttccagacatc B D Pika ggc--ta----tttgcaaaatattttgcaggtc-ctttgttttgtc-ttttggtatacattgcagatact B D Human agt--tatttgtttgcaaaggacagtgcaggtctttttgttc--tc-tattgacataagtaccagatccc B D Chimp agt--tatttgtttgcaaaggactgtgcaggtctttttgttc--tc-tattgacataagtaccagatccc B D Bonobo agt--tatttgtttgcaaaggactgtgcaggtctttttgttc--tc-tattgacataagtaccagatccc B D Gorilla agt--tatttgtttgcaaaggactgtgcaggtctttttgttc--tc-tattgacataagtaccagatccc B D Rhesus agt--tatttgtttgcaaaggactttgcaggtcgttttgttc--tc-tattgacataagtaccagatccc B D Marmoset ag------ttgtttgcaaaggactttgcaggtcattttgttc--tt-tattgacaaaagtgccagatccc B D Tarsier agt--tacttgtttgcaaaggtctttgcaagtcttcttg--------ggttgacataagtaccagatccc B D Bushbaby agt--ta--tgtttgcaaaagactttgcaggtc-ttttgttc-----tattgacataggcactagatccc B D Tree shrew agt--tacttgtttgcaaaggactttacagctc-ttttgttctgtc-ttttgacgtaaacacaagagacc B D Malayan flying lemur --t--tatttgcttgcaaaggactttgtgggtc-ttttgttctatc-tattgatataagcaccagatccc B D Pig agt--tatttgtttgcaaaggactttgcaggtc-ttttgtt-cgtc-tgttgacaaaagtactagatccc B D Cow agt--catttgtttgcaaaagactttacaggtc-ttttgttccatc-tgttgacttaagtactagatccc B D Sheep agt--catttgtttgcagaagactttacaggtc-ttttgtttcatc-tgttgacttaagtactagatccg B D Horse agt--tatttgtttgcaaaggactttgcaagtc-ttttgttccatc-tgttgacataaaaa--------- B D Chinese pangolin agt--tacttgtttgcaaagga----------c-ttttgctccatc-tattgacagaagtactaggtccc B D Dog agt--tatttgtttgcaaaggactttgcaggtc-tttggtc---tc-tgttgacctaagtgcgagatccc B D Hawaiian monk seal agt--tacttgtttgcaaaggactttgtaggtc-ttttgtctcatc-tattgacataagtactagatccc B D Hedgehog agttctacttgtttgcaaaggattttgcaaatc-ttttgttccaac-tgttgacttaaataccagattgc B D Shrew agt--tatttgtttgcaaaggactttgcaggtc-ttttg-tccatc-tgttaacataagtactagaattc B D Elephant agt--tatttgtttgcaaatgatct-gtgggtc-ttttattctatc-tgttgac-----------acagt B D Tenrec agt--ggttggtttgcaaatgacccagcggatc-ttttgttcggtc-tgttgactcacttacccgacctt B D Guinea pig NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN B D Zebrafish ====================================================================== B D X. tropicalis ====================================================================== B D Opossum ====================================================================== B D Chicken ====================================================================== B D Dolphin ====================================================================== Mouse cacagtgtagtgagcatttttc--ag-cctgtctctg------agcatca--gccaggtc-----acact Rat cacagtgtagtgagcatttgtc--ag-gttgtttctg------cgcatca---ccgggtc-----acact GCF_003668045 cacagtgcggtgagcatttttc--ag-gctgtctttg------agcaaga---------c-----acact Beaver cacagagcagtgagc-------------ctgtttctg------gata------------c-----acctt Squirrel cacaatgcactgagcacttttc--ta-gatgtctctg------aacaccaa-gccagg-t-----ac-ct Rabbit cacagcacagtgagc----------------gctctg------agcacgga-tacagg-c-----aa-ct Pika cgcagcgcaaccaga---------------ggctcct------agggtagagtgcagg-c-----ac-ct Human cacagtgcag-------------------------tg------agcaccag-tgcagg-c-----accct Chimp cacagtgcag-------------------------tg------agcaccag-tgcagg-c-----accct Bonobo cacagtgcag-------------------------tg------agcaccag-tgcagg-c-----accct Gorilla cacagtgcag-------------------------tg------agcaccag-tgcagg-c-----accct Rhesus cacagcgcag-------------------------tg------agcaccag-tgcagg-c-----accct Marmoset cacagtgcag-------------------------tg------agcaccag-tgcagg-c-----accct Tarsier cacagtgtagtgagagcactt---tgggatgtctctg------agcagcag-aggcag-c-----acctt Bushbaby cacagcgcaatgagcacttttc--tgcaaagtctctg------aacacca---gcagg-c-----gccct Tree shrew -acagcactgtgaacacttttc--t--gatgtctttg------agcacgcg-cacggg-c-----accct Malayan flying lemur tggagcacagtgagcacttttc--tg-gacgtctctc------agctccag-cacagt-c-----accct Pig cgaggcacagtgagcactcttc--tg-gatgcctctg------agagccag-cacggg-c-----tcagt Cow cacagcacagtgagcact-ttc--tg-gacgtttctg------agagccag-aacagg-c-----atagt Sheep cacagcacagtgaacact-ttc--tg-gacgtttctg------agcgccag-aacagg-c-----atagt Horse --------agtgaggacttttc--tg-aatgtctttg------agcaccag-cacagg-c-----gcggt Chinese pangolin cacagtgcagtgaacacttaac--tg-gatgtctttg------agcaccag-cacagg-c-----tccat Dog cactgcgcggcgagcacttttc--tg-gatgtctcggagcagcagcagcag-cacagg-cccaagacggt Hawaiian monk seal cacagcacggtgagcacttttc--tg-gatgtctctg------agcaccgg-cccagg-ccaaggacggt Hedgehog cacagca----gagcagttttttcta-gatgtctctg------aacacaag-ta-tga-c-----taggg Shrew cgcaataaattgagcacttttt--ta-gatgattctg------agcaccgg-cactgg-c-----agaga Elephant actagcactgtgagcacttttc--tg-gatatctccg------tatgccag-cgcagg-c-----accct Tenrec cccagcatggtgagcactttgc--tg-aacgtctctg------gat--cag-tgcagg-c------ttct Guinea pig NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN Zebrafish ====================================================================== X. tropicalis ====================================================================== Opossum ====================================================================== Chicken ====================================================================== Dolphin ====================================================================== Mouse tgggcca--gg---cctcctc-aac--------------------------------------gtcacct Rat tgggcca--gg---cctcctc-tcttcct--catca----gt----c-----c-tccccactggtcatgt GCF_003668045 taggcca--ct---actcctc-tctcccg--catca----gtcttcc-----c-tccccaat-ggcaggt Beaver tggatct--gg---acgcttc-tctctcgtttttca----gc----c-----t-gctccatt-accagga Squirrel caggtca--gg---gcactcc-tctctccattttca----aa----c-----t-gccacaat-ctcagat Rabbit taggtca--gggtctctcctc-tcttcct--tttta----gt----cctagag-atcccggt-actgcat Pika ----tta--gg-----ttctt-gctgccc--tttca----at----c-----------------cagcat Human taggtca--ga--cgctcctc-tctttct--tttca----gc----c-----a-gccccact-gccaaat Chimp taggtca--ga--cgctcctc-----tct--tttca----gc----c-----a-gccccact-gccaaat Bonobo taggtca--ga--cgctcctc-tctttct--tttca----gc----c-----a-gccccact-gccaaat Gorilla taggtca--ga--cgctcctc-tctttct--tttca----gc----c-----a-gccccact-gccaaaa Rhesus taggtca--ga--cgcccctc-tctttct--tttca----gc----c-----a-gccccact-cccaaat Marmoset taggtcc--gg--cgc-------ctttct--tttta----gc----c-----a-gccccagt-cccaaaa Tarsier taggtca--ga--ctcccccaatctctct--tttca----ag----t-----g------agt-cctagat Bushbaby caggtta-gga--agctgctc-----tct--ttttt----ga----c-----a-gccctagt-cccagat Tree shrew taggtga-gga--tg------------ct--tttca----gt----t-----c-atcatagt-cccaggg Malayan flying lemur caggtca-gga--agctcctc-tttgcct--cttca----gc----c-----c-gccccagt-ctcagat Pig taggcta-gag--cgaccttc-tctccct--tttcagtccgc----a-----c-gcaccaat-ttgagat Cow taggcca-gca--cgaccctt-tctcc-------------------------c-gcaccagt-ctcagat Sheep taggcca-gca--cgaccctt-tctc-------------------------------------------- Horse gaggcca-gga--cactcctc-tctccct--tttca----gt----c-----c-c-----------agac Chinese pangolin taggcca-gga--cgctcccc-tctccct--tttca----gt----c-----c-tcaccaat-gcaggat Dog taggccaggga--cgctcctc-tctcccc--tttcactccgc----c-----c-gcaccagt-cc-ctgt Hawaiian monk seal taggccaaggg--cgctcctc-tctccct--tttca----gt----c-----c-gcaccagt-cc-ccgt Hedgehog tagacca-aaa--cacc--ct-tcttcct--tttca----ac----c-----c-aagccagt-cccaggg Shrew taggcca-gga--cacccacc-tctccct--tttca----gc----c-----t-gcctcagt-cccagat Elephant tagccca-gga--cactcctc-tctccct--ttcca----gc----c-----g-gcgccagt-cctagat Tenrec tagacca-gga--cgtatctc-attccat--gcccc----cc----c-----gcggcccagt-cccagac Guinea pig NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN Zebrafish ====================================================================== X. tropicalis ====================================================================== Opossum ====================================================================== Chicken ====================================================================== Dolphin ====================================================================== Mouse ctttgcctctctc-c--t-------------------ttag-----tagg------------------g- Rat ctttgccactctc-c--t-------------------tcag-----tagg------------------g- GCF_003668045 ctttgccactctc-c--t-------------------ccag-----taag------------------g- Beaver ttttatcactctcgc--t-------------------ccag-----tcggtcctgtgttagtactggag- Squirrel ctttgccacctcc-c--t-------------------ccag-----ttcg------------------c- Rabbit ctttgtcagtctc-cagt-------------------ccag-----cctg------------------g- Pika ctttgtccatttc-caac-------------------gtag----ccctg------------------a- Human tgttgtcaacccc-cagt-------------------cggc----cttgg------------------g- Chimp cgttgtcaacccc-cagt-------------------cggc----cttgg------------------g- Bonobo cgttgtcaacccc-cagt-------------------cggc----cttgg------------------g- Gorilla cgttgtcaacccc-cagt-------------------cggc----cttgg------------------g- Rhesus cgttgtcaacccc-cagt-------------------cggc----cttgg------------------g- Marmoset cgttgtcaacccc-cagt-------------------cggc----cttgg------------------gt Tarsier ctttgtcaa-ccc-tggt-------------------tggc----cttgg------------------g- Bushbaby ctttgtcaaccca-gagt--------------------ggc----cttgg------------------g- Tree shrew cct-------ccc-tcct-------------------catcctcacctct------------------g- Malayan flying lemur catagttaacccc-cagt-------------------cggtcgc-cctgg------------------g- Pig ttttgtcaacccc-cagtggatcctgggttaggattgggac----cctgg------------------g- Cow ttttgtcaacccc-cagt-------------------cgac----cctgg------------------g- Sheep ---------cccc-cagt-------------------cgac----tctgg------------------g- Horse tcttgtgaagccc-cagt-------------------cggc----cctgg------------------g- Chinese pangolin ttttgtcaactcc-caga-------------------cgac----cctgg------------------g- Dog ttcctgc-ctccc-gagt-------------------cgac----cccgg------------------a- Hawaiian monk seal tttcgtcaatccc-gagt-------------------cgac----cctgg------------------g- Hedgehog ttatg---------gagt-----------------------------tgg------------------g- Shrew cttt----------------------------------------------------------------g- Elephant ctttgtcagtcct-cact-------------------cggc----cctgg------------------g- Tenrec tttggccggttcc-cacc-------------------cggg----cctgg------------------g- Guinea pig NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN Zebrafish ====================================================================== X. tropicalis ====================================================================== Opossum ====================================================================== Chicken ====================================================================== Dolphin ====================================================================== Mouse --acagagatgagga--acaga----tatc---------------c------cac-ttca---------- Rat --acagaggtaagga--acaaa----tatc---------------c------ca--ttta---------- GCF_003668045 --acaggggtgatga--attaa----tatc---------------c------aac-ttca---------- Beaver --aaagagagaatgg-----gg----catc---------------c------aac-ctca---------- Squirrel --cccaggttaaagaaaaaagg----tatt---------------c------aac-ctca---------- Rabbit --attaggatgggcg-agttgg----gaac---------------a------gcg-catc---------- Pika --gttaggatgggga-ggtgga----gaag---------------c------aag-cgcg---------- Human --ttaagaatgagga-ggtgga----gaac-----ggcacgt--gc------agc-ctta---------- Chimp --ttaagaatgagga-ggtgga----gaac-----ggcacgt--gc------agc-ctta---------- Bonobo --ttaagaatgagga-ggtgga----gaac-----ggcacgt--gc------agc-ctta---------- Gorilla --ttaagaatgagga-ggtgga----gaac-----ggcacgt--gc------agc-ctta---------- Rhesus --ttaagaatgagga-ggtgga----aaac-----ggcgcgt--gc------agc-ctta---------- Marmoset tattaagactgagga-ggtaga----gaacccgcgggcgcgt--gc------agc-ctta---------- Tarsier --ttaggactgagga-ggtgga----gaat-----ggcctga--cc------agt-ctca---------- Bushbaby --ttaagattgagga-ggtgga----gaat-----ggcgtgt--cc------agc-ctct---------- Tree shrew --cca----tgaggg-ggtaga----gcag-----aatgcat--cc------aac-ttta---------- Malayan flying lemur --ttaggattgggga-ggtgaa----gaag-----ggcccat--ct------agc-ctca---------- Pig --ttaggactgggga-----------gaat-----ggcgcat--cc------agt-ttca---------- Cow --ttaggactgagga-----------gaac-----agcgcgt--cc------agt-ttca---------- Sheep --ttagtactgggga-----------gaac-----ggggcgt--cc------agt-ttca---------- Horse --tcagggtgggga------------gaac-----cacgcat--cc------gac-ttca---------- Chinese pangolin --tcaggattgggat-----------gaac-----agggcat--cc------aac-ttca---------- Dog --cgaggactgggac-----------gagc-----ggcgcgt--cc------agc-ttcg---------- Hawaiian monk seal --ttaggactgggac-----------gaac-----agcgcat--cc------agc-ttca---------- Hedgehog --ttaga-------------------gaac-----agcattt--cc------agc-ttcag--ggtttgt Shrew --tcagc-------------------cacc-----aatcgtc--ccccgggtagcattcagcaggaaaat Elephant --ttagtattgagga-ggaggaggaagaat-----atggtgcatcc------agc-ctca---------- Tenrec --ttcgtcctgggga-ggacaag---aaat-----gtggcgc--tc------agc-ctaa---------- Guinea pig NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN Zebrafish ====================================================================== X. tropicalis ====================================================================== Opossum ====================================================================== Chicken ====================================================================== Dolphin ====================================================================== Mouse ---------caactttggg--tttttct------tc-tgtttgg-----------gggga---------- Rat ---------caggtttggatttttttct------tc-tgtttgg-----------gaaaa---------- GCF_003668045 ---------caactctggg-ttctttct------tc-catttgg-------------------------- Beaver ---------c------ggg-ttctttct------tc-aatttgg-------------------------- Squirrel ---------c------agg-ttctttctatgaggtt-cattcgg-------------------------- Rabbit ---------c------agc-ttctgtcc------ca-gatttgg-------------------------- Pika ---------c------agg-c----acc------ca-gatttgg-------------------------- Human ---------a------ggg-ttccttct------cc-gattt---------------------------- Chimp ---------a------ggg-ttccttct------cc-gattt---------------------------- Bonobo ---------a------ggg-ttccttct------cc-gattt---------------------------- Gorilla ---------a------ggg-ttccttct------ct-gattt---------------------------- Rhesus ---------a------ggg-ttccttcc------cc-tattt---------------------------- Marmoset ---------a------gag-ttccttc-------ct-gattt---------------------------- Tarsier ---------c------gag-ctctttcc------tc-gattt---------------------------- Bushbaby ---------g------gac-ttctttcc------ccagattt---------------------------- Tree shrew ---------a------agg-ttatttct------ct-gatttgg-----------agaaatttgggaaaa Malayan flying lemur ---------c------ggg-ttctttcc------tt-gatttgg-----------gaaaatttggg-aaa Pig ---------c------ggg-ttctttcc------cc-gatttgg-----------gaaaagtt------- Cow ---------c------gcg-ttctttcc------cc-gatttga-----------gaaaattc------- Sheep ---------c------gcg-ttctttcc------cc-gatttaa-----------gaaaattc------- Horse ---------c------gga-ttctttcc------ca-gatttgg-----------gaatactg------- Chinese pangolin ---------c------ggg-ttctttcc------tc-gatttgg-----------gaaaac--------- Dog ---------c------gtg-ttcgttcc------tc-gatttag-----------gaaaac--------- Hawaiian monk seal ---------c------gtgtttcattcc------tc-gatttag-----------gaaaac--------- Hedgehog ttgttttt-t------gtt-ttttttcc---------tgttgtg-----------ggaatgtt------- Shrew ctgcttccac------agg-ttcattcc---------gactggg-----------gaaaattt------- Elephant ---------a------ggg-ttctttcc------ct-gatttgggagaatattgaggaaattt------- Tenrec ---------c------agg-ttcttttt------cc-cactcgg-----------agaaattt------- Guinea pig NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN Zebrafish ====================================================================== X. tropicalis ====================================================================== Opossum ====================================================================== Chicken ====================================================================== Dolphin ====================================================================== Mouse -----aa--------------aaaaaa----------------------------------ccctctttc Rat -----ac--------------aaacaaacaaacaacaaacaaaaatcaaaacaagactc--ctctctttc GCF_003668045 -----aa--------------aaatat------------------------------tc--gtctctttc Beaver -----ag--------------aaatta------------------------------tcgggtttctttc Squirrel -----ga--------------aaattc------------------------------tca-atttcttcc Rabbit -----ga--------------aaacgc------------------------------tcgggtttctttc Pika -----gaaactctgagggggcaaaacc------------------------------tcagattttctcc Human -----ag------------------------------------------------------gtttcttcc Chimp -----ag------------------------------------------------------gtttcttcc Bonobo -----ag------------------------------------------------------gtttcttcc Gorilla -----ag------------------------------------------------------gtttcttcc Rhesus -----ag------------------------------------------------------atttcttcc Marmoset -----gg------------------------------------------------------gtttcttcc Tarsier -----gg------------------------------------------------------gtttctacc Bushbaby -----gg------------------------------------------------------gtttcttcc Tree shrew ctctcag------------------------------------------------------atttcttcc Malayan flying lemur ctctcag------------------------------------------------------gtttcttgc Pig -----gg--------------gggaaa---------------------------ctctcgggttccttcc Cow -----gg--------------gggaaa--------------------------attttcagattccttcc Sheep -----gg--------------gggaaa----------------------------cttcagattccttcc Horse -----gg--------------gggcaa---------------------------ctttcaggccccttcc Chinese pangolin ---------------------------------------------------------tcaggttccttcc Dog -------------------------------------------------------tctcaggttccttcc Hawaiian monk seal -------------------------------------------------------tctcaggttccttgc Hedgehog -----tg------------tagagaaa---------------------------ctttctgactcttctg Shrew -----tg--------------ggaaaa---------------------------ctcctgggttctttcc Elephant -----gg--------------gaaatc----------------------------tcccaggtttcttcc Tenrec -----gg--------------aaaatc----------------------------tctccggtttctttc Guinea pig NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN Zebrafish ====================================================================== X. tropicalis ====================================================================== Opossum ====================================================================== Chicken ====================================================================== Dolphin ====================================================================== Mouse aat--cc-attccct--ggga----------gatcaagaagggagaaaggaaatc-taatgctgacttag Rat aat--cc-gttccct--ggga----------gatcaaggaggaagaaagaaaatc-taatgctgccttag GCF_003668045 aac--cc-attccct--gaga----------gatcaagaagggagaaaggaaatc-taacgctggtttaa Beaver act--tg-tttccct--gagt----------taccaagggcagag---ggaaatc-aaaggccagttgaa Squirrel ac----------------------------------ggaaaggaggagggaaatc-cagggctgcttgaa Rabbit actcgct-ttcctcg--gggt----------agtgaagaggggaggagggaaatc-gaaggttagcagaa Pika actaaca-gtcttcg--gaga----------agcgcagaggggagctgggaaatc-gaaggttggtggga Human act--cc-tttgccc--tggg----------agagcaaaggggcgaagggaaatc-aaaaaccggttga- Chimp act--cc-tttgccc--tggg----------agagcaaaggggcggagggaaatc-aaaaaccggttga- Bonobo act--cc-tttgccc--tggg----------agagcaaaggggcggagggaaata-aaaaaccggttga- Gorilla act--cc-tttgccc--tggg----------agagcaaaggggcggagggaaatc-aaaaaccggttga- Rhesus act--cc-tttgccc--tggg----------agagcggagggtcggagggaaata-aaatactggttga- Marmoset act--cc-tttgccc--tggg----------agagcggaggagtggagggaaagc-aaagaccggttga- Tarsier acc--ca-tttccgc--gtgg----------agtgaggagggatggagggaaatc-aagggctgattgaa Bushbaby act--tt-tttcctt--gggg----------attgaggaggggaggagggaaatc-aaagtctggttgaa Tree shrew act--ta-ttccctg--gggg----------agccaaaaggggaggagggaaact-gaaggctgattga- Malayan flying lemur act--tgttttccca--ggga----------atcgaggaggggaggagggatata-aaaaaccggttga- Pig att--cg-ttttccc-cgggg----------agagaggatgggaaga-agaaacc-aaaggccggcccg- Cow act--cg-ttt-ccc-agggg----------agcgaggacgggagga-ggtaatc-aaaggccgttggg- Sheep act--cg-tttcccc-agggg----------agcgaggatgggagga-ggtaatc-aaaggccggttaa- Horse act--ca-tttcccc--ggga----------agcgaggag-ggagga-ggaactc-aaaggccggttga- Chinese pangolin act--cg-tttcccttggggg----------agcgaggag----ggg-agaaatc-aaatgcaggctga- Dog att--cg-cttcccc-ggggg----------aacaaggagaggagga-gggaatc-aaaggcttttgaa- Hawaiian monk seal att--cg-atttccc-ggggg----------aatgaggaggggagga-ggaaatc-aaaggctgttgaa- Hedgehog act--tt-gtggtgc---act----------a------agaggggga-ggaaatc-taaggtctgttga- Shrew act--tg-tttcccc-agact----------agcgaggaggggagga-agaagccaaaaggccagatga- Elephant act--cg-ttttccc--gggggagcgaggacagaaggaggaggagga-aaaaatc-aaaggccggtaga- Tenrec act--cc-ttgtcac--ggagaa--------agccgggcaaggagga-ggaactc-aaagaccagtgggg Guinea pig NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN Zebrafish ====================================================================== X. tropicalis ====================================================================== Opossum ====================================================================== Chicken ====================================================================== Dolphin ====================================================================== Mouse gaa---aagaaag--aaaggg---g-aaa---------a---aattaaaaaacaaaaacacttcagtcag Rat gaaacgaagaaaggaaaaaaa---a-aaa---------a---aaaaaaaaaaaaaaaaaacatccgccag GCF_003668045 aaa------------aaataa---a-aca---------a---aacaaagcaaaacaaaa--ttccgtcag Beaver aac------------gaagaa---a-aaa---------a---aa-----------aaaatcttcctgcag Squirrel aac------------aaaagg---c-aaa---------acccaccaaaatcccaaacgatcttcacgcag Rabbit aa-----------------gg---g-aaa---------a-----------------ctgtcttcttgcaa Pika aag------------gagggg---g-gga---------g-----------------ggagcttctcccag Human ---------------aaaaga---a-aaa---------a-----------------gtgtcttccctcag Chimp ---------------aaaaga---a-aaa---------a-----------------gtatcttccctcag Bonobo ---------------aaaaga---a-aaa---------a-----------------gtatcttccctcag Gorilla ---------------aaaaga---a-aaa---------a-----------------gtatcttccctcag Rhesus ---------------aaaaga---a-aaa---------a-----------------atattttccctcag Marmoset ---------------aaaaga---a-aaa---------a-----------------atatcttccctcag Tarsier aaa---taagaaattaaaaaa---a-aaa---------a-----------------aaatcttccctcag Bushbaby aaa---g--------aaaaaa---a-aaa---------a-----------------aaatcctcccgcag Tree shrew ---------------aaaaaa---a-aat---------t-----------------a---------gaag Malayan flying lemur ---------------aaaaga---a-aaa---------a-----------------a-atcctcccacag Pig ---------------aaaaag------aa----aaaaaa-----------------gtatcttcctgcgg Cow ---------------ggtggg---g-ggg----ggggga-----------------atgtcttcccgcgg Sheep ---------------aaaaagaaaa-aaa----aaaaaa-----------------atgtcttcccgcgg Horse ---------------aaaaga---a-aaa---------g-----------------cggcctcctggcag Chinese pangolin ---------------aaaaga---a-aaataaaaaatga-----------------aaaccttcccgcag Dog ---------------aaaaag---g-ggg--------aa-----------------accccttcccgcag Hawaiian monk seal ---------------aagggg---g-ggg----gaaaaa-----------------aaatcttcccgcag Hedgehog ---------------aaaaga---a-aaa-----------------------------aatatctcgcag Shrew ---------------aaagga---atcaa-----------------------------attctctcgcag Elephant ----------------aaaaa---a-aaa---------a-----------------aaatctccccacag Tenrec gtgcggggg------tggggg---g-aca---------a-----------------ctttctacccacag Guinea pig NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN Zebrafish ====================================================================== X. tropicalis ====================================================================== Opossum ====================================================================== Chicken ====================================================================== Dolphin ====================================================================== Mouse gcgtgggtgaaacttaactc----aggcctactt--ttaggcc-gttaaaacg-tctcc-aggccctaga Rat gagtgggtgaaacttaactc--agaggcctactt--tcaggcc-attaaaact-tctcc-aggccctagc GCF_003668045 gcgtgggtgaaacttaactc--acaggcctactt--tcaggcc-attaaaact-tctcc-aggccctaag Beaver gcatgagtgaaac--aactc--agaggcctactc--tcaagcg-agaaaacct-tcagc-aggccctagg Squirrel gcaggggtggaac--gactcagagaggcctactc--ttaggcg-agtacaact-ttact-aggtcctggg Rabbit gcac-----------gactg--gaaggcctggtc--tcaggcg-aggcgaact-tcacc-aggccccggg Pika gcgc-----------cgcgg--aaaggcctcttt--tcaggag-agtgacact-tggcc-ag---ccacg Human gcgtgggtcagag--aatttggaaaggcctactc--tgagggg-agtaaaact-tcacc-aggccctggg Chimp gcgtgggtcagag--aatttggaaaggcctactc--tgagggg-agtaaaact-tcacc-aggccctggg Bonobo gcgtgggtcagag--aatttggaaaggcctactc--tgagggg-agtaaaact-tcacc-aggccctggg Gorilla gcgtgggtcagag--aatttggaaaggcctactc--tgagcgg-agtaaaact-tcacc-aggccctggg Rhesus gcgtgggtcagag--aatttggaaaggcctactc--tcaggca-agtaaaact-tcacc-agg-cctggg Marmoset ac----gtcagat--aactcggaaaggcctgcat--tcaggcg-agtaaagct-tcacc-aggccctggg Tarsier gcgtgggtgacag--aattcggggaggcctactc----aggcg-agcaaaact-tcacc-aggccctgga Bushbaby gcgtgggtgagag--aacttggagaggcctactc--tcaggcg-agtgaaact-tctcc-aggcctgggg Tree shrew acttgggagagaa--cgcggagagagatctattc--tcaaagg-aataaaacttccgcc-gggtcgccag Malayan flying lemur gcgtaggtgagag--acctcggagaggccta--c--tcaggag-agtaaagctcttgtc-aggccgtggg Pig cctgggggc-gag--agctgggagaggcctactc--cgaggcg-ggt-cacct-tcgcc--ggccctggg Cow gcgtggggcagag--agcggggagaggcctactc--cgaggc---gt-cacct-gggcc-ggggcctggg Sheep gcgtggggcagag--agcggggagaggcctactc--cgaggc---gt-cacct-gggcc-gggccctggg Horse gcgtgggtgagag--agctgggaaaggcctac-c--cgaggcg-agt-ccgct-ccacc---agcccggg Chinese pangolin gcgtgggtaagag--agctgagagaggcctactc--tggggcg-agc-aaatt-tcacccggggtctggg Dog gcgtgggggagag--cgctgggagaggcctacgc--cgagggg-cgt-gaact-gcgcc-ggggcccggg Hawaiian monk seal gcgtgggtgaaag--agctgggagaggcctactc--tgaggag-agt-aaact-tcgcc-gggccctggg Hedgehog gggtgggcgtgag--ctctcagagagagcttttt--------------------tctca--------gtg Shrew gcctttgtgagag--agctgggagaggcccacttagagaggcg-agt-gcacg-tccca--ggccttgcg Elephant gcgtgggggaaaa--agcttggcagggcctactc--tgaggag-tgtaaaaat-ccacccaggccctgga Tenrec gggtg----------agtttggcgaggcctactc--cgaggcgaaataaaagt-tcccccaggcctgagg Guinea pig NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN Zebrafish ====================================================================== X. tropicalis ====================================================================== Opossum ====================================================================== Chicken ====================================================================== Dolphin ====================================================================== Mouse -ctgaaa---actg----aggagtctatgcttaggcccagcg-tc----cctaggaggc--------cta Rat -ctgaaa---acag----aggagtctgcgcctaggcccagcg-tc----cttaggaggc--------cta GCF_003668045 -ctgaaa---accg----agaggtctacccttgggcccagcg-cc----ggtaggaagc--------cta Beaver -ctgaca---gcag----acgaggcagcagctgggctcagcg-tt----cctgggaggc--------cta Squirrel -ctgtga---gtgg----tggaggccgcagatggccacaggg-ac----cctctgggccaccctcttccc Rabbit ----------------------------ggctggtgtcggc--cc----ccggcgatgc--------cga Pika ----------------------------ggctggc----------------------------------- Human -ctggaa---gcac----aggaggtcgcggctgggcccagcg-cc----ctcgggaggc--------caa Chimp -ctggaa---gcac----aggaggtcgcggctgggcccagcg-cc----ctcgggaggc--------caa Bonobo -ctggaa---gcac----aggaggtcgcggctgggcccagcg-cc----ctcgggaggc--------caa Gorilla -ctggca---gcac----aggaggtcgcggctgggcccagcg-cc----ctcgggaggc--------caa Rhesus -ttggaa---gcac----aggaggtcgcggctgggcctagcg-cc----ctcgggaggc--------caa Marmoset -ctggaa---gcaccggacggaggtcgcggctgggcccagcg-cc----ctcgggagac--------cga Tarsier -ctggaa---gcag----aggaggccgcggctggaccccgcgccc----ctggggaggc--------ctt Bushbaby -ctgg-----------------ggctgtaactgggcccagcg-tc----c-gagcaggc--------tta Tree shrew -ctagaa---gctg----agaaggtcctggctg------gtg-ct----cttgggaggc--------cta Malayan flying lemur -ctggaa---gc-g----gggagaccgcggctgggcccagcg-tc----cctgggaggc--------cta Pig -ctgcca---gcgg----gagagacccggcccgcgcc------------cccgggaggc--------cga Cow -ctgccg---gccg----gagaggtgggccccgcgcc------------cctgggaggc--------gga Sheep -ctgccg---gccg----gagaggcgggccccgcacc------------ccttggaggc--------gga Horse -ccggga---g-cg----gagaggcggcgcccgggcccagcg-c-----cccgggaggc--------cga Chinese pangolin -ctggaa---gccg----gaaaggccgcgcctgggcccggcg-c-----cccgggaggc--------tga Dog -ctgcga---gccg----ccgaggccgcg--------------------cccgggaggt--------cgg Hawaiian monk seal cctggaa---gccg----gcgaggccgcgcctgggcccggcg-cc----cccgggaggt--------cga Hedgehog -ttacaaactgtca----c-tagac----cctggacaccgta-ctcctgcctgggaggc--------ca- Shrew -ctggaa---gtca----g-ggggccctgcctgggtcccgcg-ct----cctgggaggc--------caa Elephant -ctggaa---gcgg----aggaggccgcggttgggcccagag-cc----cctgggaggc--------cga Tenrec -ctagaa---tcga----aggaggagacggctggggcccgcg-tc----cccgggagtt--------cga Guinea pig NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN Zebrafish ====================================================================== X. tropicalis ====================================================================== Opossum ====================================================================== Chicken ====================================================================== Dolphin ====================================================================== Mouse g----ttcaggggagttgaccaaaggtcttagcctagga---------ccttt--gt------------- Rat g----tgcaggggagtggaccaaaggtcttagcctagga---------ccttt--gtggtaggggatt-c GCF_003668045 g----tgca-aggagttgacccaaggtcttagccctgaa---------gcttt--gtggttagggatt-c Beaver g----cgca-gggggcccaccggaggttttagccccaga---------gctta--gtggtcacgggtt-c Squirrel g----cccccgggagc--acccgggttgctgggctagg----------------------------tt-c Rabbit g----ggca-gggggcctagccgaggtcgcggg---------------------------------tg-c Pika ----------ggagtcctggccgaggtcggg--------------------------------------- Human g----ggca-gggagccgacccaaggtctaagccctcca---------gctct--c-cgtcgcgggtt-t Chimp g----ggca-gggagccgacccaaggtctaagccctcca---------gctct--c-cgtcgcgggtt-t Bonobo g----ggca-gggagccgacccaaggtctaagccctcca---------gctct--c-cgtcgcgggtt-t Gorilla g----ggca-gggagccgacccaaggtctaagccctcca---------gctct--c-cgtcgcgggtt-t Rhesus g----ggca-gggggccgacccaaggtcttagccctcca---------gctct--c-cgtcgcgggtt-t Marmoset g----ggca-gggggccgacccaaggtctgagccctcga---------gctct--ctcgtcgcttact-t Tarsier g----ggc---ggggcggacccgaggtctgagctctcat---------gctct--cgggtcgcgggtt-c Bushbaby gggaaggca-gggggtccacccgaggccggagtccaggc---------gcttt--ctaggctaggatt-c Tree shrew g----ggca-aatagacgatccgagatcggagctctagt---------gctct--ctgatcgagggtt-c Malayan flying lemur g----ggca-gg-ggctgaacgtcggtcagagccctcga---------gctct--ctggtcgcagact-c Pig g----ggca-gggggccga-ccgaggtcgcaagcctcgc---------gctcg----------------c Cow g----ggca-gggggccga-ccgaggtcgcggccctggc---------gctcg----------------c Sheep g----ggca-gggggccga-ccgaggtcgcggccccggc---------gctcg----------------c Horse g----ggca--ggggccg--ccgaggtccgggcgcgggt---------gctcg----------------c Chinese pangolin g----ggca-gggggccg--acgaggtcggagcccttgt---------gctca----------------c Dog g----ggca-------------ggggtcggcgccccgga---------gctcg----------------c Hawaiian monk seal g----ggca-------------ggggtcggagccctgga---------gctcg----------------c Hedgehog -----------------gc-acaaggtgggggggcagtgtcaaccaaggtcagcccaagtgcctgctgcc Shrew g----ggca-------ggc-acgaggcaaaggacctggg-------agactag----------tattg-c Elephant g----ggca-gggggccgacccgaggtcggagtcctcgt---------gccct--ctggtcttgggtt-c Tenrec a----ggca-gggggtcgccccaaggtcgg---------------------------------ggctt-c Guinea pig NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN Zebrafish ====================================================================== X. tropicalis ====================================================================== Opossum ====================================================================== Chicken ====================================================================== Dolphin ====================================================================== Mouse -ggtctt Rat gggtctt GCF_003668045 gggtgtt Beaver gggtcgc Squirrel cggccgc Rabbit gggtctc Pika ------- Human gggtccc Chimp gggtccc Bonobo gggtccc Gorilla gggtccc Rhesus gggtccc Marmoset gggtccc Tarsier aggtcct Bushbaby cggtccg Tree shrew gggtccc Malayan flying lemur gggtccc Pig gggtggg Cow gggtcgc Sheep gggtcgc Horse ggggggc Chinese pangolin aggtcgc Dog cggtcgc Hawaiian monk seal gggtcgc Hedgehog ggaccct Shrew gggtcac Elephant gggtcca Tenrec gggtcct Guinea pig NNNNNNN Zebrafish ======= X. tropicalis ======= Opossum ======= Chicken ======= Dolphin ======= Inserts between block 12 and 13 in window B D Pig 13bp B D Cow 13bp B D Sheep 13bp B D Horse 13bp B D Chinese pangolin 13bp B D Dog 13bp B D Hawaiian monk seal 13bp B D Hedgehog 13bp B D Shrew 13bp Alignment block 13 of 393 in window, 56746738 - 56746741, 4 bps B D Mouse gtct B D Rat gtct GCF_003668045 gtct Beaver gtct B D Squirrel gtct B D Rabbit gtct B D Pika gtct B D Human gtct B D Chimp gtct B D Bonobo gtct B D Gorilla gtct B D Rhesus atct B D Marmoset gtct B D Tarsier gtct B D Bushbaby gtct B D Tree shrew ttct B D Malayan flying lemur ctct B D Pig gtct B D Dolphin gtct B D Cow gtct B D Sheep gtct B D Horse gtgt B D Chinese pangolin gtct B D Dog gtct B D Hawaiian monk seal gtct B D Hedgehog cttt B D Shrew gtct B D Elephant gtct B D Tenrec gtct B D Guinea pig NNNN B D Zebrafish ==== B D X. tropicalis ==== B D Opossum ==== B D Chicken ==== Alignment block 14 of 393 in window, 56746742 - 56746761, 20 bps B D Mouse c-aggaggggg--gcg----cg-ggttg B D Rat c-aggaggggg-cgcg----cg-ggttg GCF_003668045 c-aggaggggg-cgcg----cg-ggttg Beaver c-aggaggggggcgcg----cg-ggtta B D Squirrel c-cggaggggggcaag----cg-ggcag B D Rabbit c-aggaggggg-cgcg----cg-ggttg B D Pika t-tgga---------g----cg-ggttg B D Human c-aagagtggggcgcg----cg-ggctg B D Chimp c-aagagtggggcgcg----cg-ggctg B D Bonobo c-aagagtggggcgcg----cg-ggctg B D Gorilla c-aagagtggggcgcg----cg-ggctg B D Rhesus c-aagagtggggcgcg----cg-ggctg B D Marmoset c-atgagtggggcgtg----cg-ggctg B D Tarsier c-aggagggggacgcg----cgcggctg B D Bushbaby c-cggaggggggcgcg----ca-gttgg B D Tree shrew c-aggagtggggcgcg----cg-agttg B D Malayan flying lemur c-gggaagggggcgcg----cg-ggtcg B D Pig c-aggaggggg-cgcg----c--ggttg B D Dolphin cgagggagggg-cgcg----c--ggtta B D Cow c-aggaggggg-cgcg----c--ggtcg B D Sheep c-aggaggggg-cgcg----c--ggtcg B D Horse c-aggcggggg-cgc-----ag-ggtcg B D Chinese pangolin c-aggaggggg-cgct----cg-ggttg B D Dog c-cggaggggg-cgcg----cg-ggtcg B D Hawaiian monk seal c-aggaggggg-cgcg----cg-ggttg B D Hedgehog g-gggtgtggg-ggtgggtagg-ggtga B D Shrew c-aggaggggg-cgcg----ct-ggtgg B D Elephant c-tggagggag----g----tt-gg--- B D Tenrec c-tggagggag----g----ct-g---- B D Chicken c-aggaggcga--ggg----ac-ggctg B D Guinea pig NNNNNNNNNNNNNNNNNNNNNNNNNNNN B D Zebrafish ============================ B D X. tropicalis ============================ B D Opossum ============================ Alignment block 15 of 393 in window, 56746762 - 56746780, 19 bps B D Mouse a----a-c-ccccgc-------ct-------gaaatttc B D Rat a----g---ccccgc-------ct-------gaaatctc GCF_003668045 a----g--------c-------ct-------gacaactc Beaver g----tgc-ctcagc-------ct-------gaca--tc B D Squirrel g----c-c-atcagc-------tt-------gaca--tc B D Rabbit g----g-ctaccaac-------ct-------gaca--cc B D Pika g----a-c-acccac-------ct-------gata--cc B D Human g----g-cctccggc-------ct-------gaca--cc B D Chimp g----g-cctctggc-------ct-------gaca--cc B D Bonobo g----g-cctccggc-------ct-------gaca--cc B D Gorilla g----g-cctccggc-------ct-------gaca--cc B D Rhesus g----g-cctccggc-------ct-------gaca--cc B D Marmoset g----g-cctccggc-------ct-------gaca--cc B D Tarsier g----g-cttccagc-------ct-------gaca--cc B D Bushbaby g----a-cctccagc-------ct-------gaca--cc B D Tree shrew g----g-cctccagc-------ct-------gaca--cc B D Malayan flying lemur g----g-cctccagc-------ct-------gaca--cc B D Pig g----c-cctcggac-------ct-------gatg--cc B D Dolphin g----c-cctccagc-------ct-------gacg--cc B D Cow g----c-cctacagc-------ct-------gacg--gc B D Sheep g----c-cctccagc-------ct-------gacg--gc B D Horse g----a-gctccggc--------t-------gacg--cc B D Chinese pangolin g----a-cctccagc--------g-------g--g--tc B D Dog g----c-cctcccgc-------tt-------gacg--cc B D Hawaiian monk seal g----a-tctccagc-------tt-------gacg--cc B D Hedgehog atactc-tgcttgga-------ctccagttggatg--ct B D Shrew a----c-tgcgtggc-------ct-------gacg--cc B D Elephant -----g-gctccggt-------ct-------gatg--cc B D Tenrec ----------------------------------a--cc B D Opossum ------aacttctgc-------ct-------t-----tt B D Chicken ------ccccttagctctacctct-------aacc--cc B D Guinea pig NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN B D Zebrafish ======================================= B D X. tropicalis ======================================= Alignment block 16 of 393 in window, 56746781 - 56746944, 164 bps B D Mouse tcttccac--cttct--caggagtgagcgacagctccccctaccacagccccaaggtggaggagtggagc B D Rat ccttccac--cttct--caggagtgagcgacagctccccctaccacagccccaaggtggaggagtggagc GCF_003668045 tcttccac--cttcc--taggagtgagcgatagctccccctaccacagccccaaggtggaggagtggagc Beaver ttgtcctc--cttcg--caggagtgagcgacagctccccctaccacagccccaaggtggaggagtggagc B D Squirrel ttctcctc--cttcc--caggagtgagcgacagctccccctaccacagccccaaggtggaggagtggagc B D Rabbit ttctcctc--ctt-c--caggagtgagcgacagctccccctaccacagccccaaggtggaggagtggagc B D Pika ctctcccg--cttcc--caggagtgagcgacagctccccctaccacagccccaaggtggaggagtggagc B D Human ctctctt---ctctc--catcagtgagcgacagctccccctaccacagccccaaggtggaggagtggagc B D Chimp ctctctt---ctctc--catcagtgagcgacagctccccctaccacagccccaaggtggaggagtggagc B D Bonobo ctctctt---ctctc--catcagtgagcgacagctccccctaccacagccccaaggtggaggagtggagc B D Gorilla ctctctt---ctctc--catcagtgagcgacagctccccctaccacagccccaaggtggaggagtggagc B D Rhesus ttctctc---ctctt--cagcagtgagcgacagctccccctaccacagccccaaggtggaggagtggagc B D Marmoset ttctcttc--ctctc--cagcagtgagcgacagctccccctaccacagccccaaggtggaggagtggagc B D Tarsier ttctcctc--ctctc--caggagtgagcgacagctccccctaccacagccccaaggtggaggagtggagc B D Bushbaby tctcctc---ctccc--caggagtgagcgacagctccccctaccacagccccaaaatggaggagtggagc B D Tree shrew ttctcctc--ctccc--caggagtgagcgacagctccccctaccacagccccaaggtggaggagtggagc B D Malayan flying lemur ttctgctc--cttcc--caggagtgagcgacagctccccctaccacagtcccaaagtggaggagtggagc B D Pig ctctcctc--ctccc--caggcgtgagcgacagctccccgtaccacagccccaaggtggaggagtggagc B D Dolphin ctctcctc--ctccc--caggagtgagcgacagctccccctaccacagccccaaggtggaggagtggagc B D Cow ctctcctc--ctcccctcaggagtgagcgacagctccccctaccacagccccaaggtggaggagtggagc B D Sheep ctctcctc--ctccccccaggagtgagcgacagctccccctaccacagccccaaggtcgaggagtggagc B D Horse ttctcctc--ct-cc--cagcagtgagcgacagctccccctaccacagccccaaggtggaggagtggagc B D Chinese pangolin ttcttctc-----cc--caggagtgagcgagagctccccctaccacagccccaaggtggaggagtggagc B D Dog ttcttctc--ctccc--caggcgtgagcgacagctccccctaccacagccccaaggtggaggagtggagc B D Hawaiian monk seal tcctcctc--ctccc--caggcgtgagcgacagctccccctaccccagccccaaagtggaggagtggagc B D Hedgehog ttctcttc--ctccc--caggagtgagcgacagctcctcctaccacagccccaaggtggaggagtggagc B D Shrew ttctgttc--ttccc--caggagtgagcgacagctccccctaccacagccctaaggtggaggagtggagc B D Elephant ttctcctc--ctccc--taggagtgagcgacagctccccctaccacagccccaaggtggaggagtggagc B D Tenrec ctttcctc--ctccg--caggagtgagcgacagctccccctaccacagccccaaggtggaggagtggagc B D Opossum tcctgtac--ttcca--ccacagtgagcgacagctccccctaccacagtccaaaggtagaagagtggagc B D Chicken ttgcccccgtgtttc--cctcagtgagcgacacctcgtcgtaccccagccccaaggtggaggagtggagc B D X. tropicalis ---tcccc--caccc--ta---gtcagtgacacctcgccgtaccccagtcccaagctggaggagtggagc B D Guinea pig NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN B D Zebrafish ====================================================================== Mouse agcctgggccgcaacaacttccctgccgccgccccgcacgcagtgaatggattggagaagggagccttgg Rat agcctgggccgcaacaacttctctgctgcagccccgcacgcagtgaatggattggagaagggagccttgg GCF_003668045 agcttgggccgcaacaacttcccggccgccgccccgcacgcagtgaacggactggagaagggggccttgg Beaver agcttgggccgcaacaacttccccgccaccggcccgcacgcggtgaacgggctggagaagggagcgttgg Squirrel agcctgggccgcaacaacttccctgctgccgctccgcacgcggtgaacgggctggagaagggagccttgg Rabbit agcctgggccgcaacaacttccctgccgccgccccgcacgcggtgaacgggctggacaagggagccttgg Pika agcctggcccgcaacaacttccctgcggctgctccgcacgcggtgaacggactggacaagggcgccttgg Human agcctgggccgcaacaacttccccgccgccgccccgcacgcggtgaacgggttggagaagggagccctgg Chimp agcctgggccgcaacaacttccccgccgccgccccgcacgcggtgaacgggttggagaagggagccctgg Bonobo agcctgggccgcaacaacttccccgccgccgccccgcacgcggtgaacgggttggagaagggagccctgg Gorilla agcctgggccgcaacaacttccccgccgccgccccgcacgcggtgaacgggttggagaagggagccctgg Rhesus agcctgggccgcaacaacttccccgccaccgccccgcacgcggtgaacgggttggaaaagggagtcctgg Marmoset agcctgggccgcaacaacttccccgccgccgccccgcacgcggtgaacgggctggagaagggagccctgg Tarsier agcctgggccgcaacaacttccctgccaccgccccgcacgcggtgaacgggctggagaagggagccttgg Bushbaby agcctgggccgcaacaacttccctgccgctgccccgcacgccgtgaacgggctggagaagggagccttgg Tree shrew agcctgggccgcaacaactttcctgccaccgccccgcatgcggtgaacgggctggagaagggaaccttgg Malayan flying lemur agcctgggccgcaacaacttccctgccgcggccccgcacgcggtgaacgggctggagaagggagccttgg Pig agcctgggccgcagcaacttcccggccgccgccccgcacgcggtgaacgggctggagaagggggccttgg Dolphin agcctgggccgcagcaacttccccgccgccgccccgcacgcggtgaacgggctggagaagggggccttgg Cow agcctgggccgcagcaacttccccgccgccgccccgcacgcggtcaacgggctggagaagggggccttgg Sheep agcctgggccgcagcaacttccccgccgccgccccgcacgcggtcaacgggctggagaagggggccttgg Horse agcctgggccgcgccagcttccccgccgccgccccgcacgcggtgaacgggctggagaagggagccttgg Chinese pangolin agcctgggccgcaacaacttccctgccgccggcccgcacgcggtgaacgggctggagaagggagccctgg Dog agcctgggccggaacaacttcccggcggccgccccgcacgcggtgaacgggctggagaagggcgccctgg Hawaiian monk seal agcctgggccggaacaacttcccggccgccgccccgcacgcggtgaacgggctggagaagggagccctgg Hedgehog agcctaggccgcaacaacttctctgccactgccccgcacgctgtgaacgggctggagaagggagccttgg Shrew agcttgggccgcaataactttcccgcggccaccccgcacgcggtgaacggcctggagaagggcaccttgg Elephant agcctaggccgcagcaacttccctgccgccgcgccgcacgcggtgaacgggctggagaagggagccttgg Tenrec agcttgggccgcagcaacttccccgccgccgcgcctcacgcggtcaacgggctggacaagggcgccctgg Opossum agtttgggccgcaacaacttttccacccctgccccgcacccggtcaatgggctggagaaagggtctttgg Chicken agcctgggccggagcagcttccccgctgcagcccagcatgccgtgaacgggctggagaagagctccctgg X. tropicalis agcctgagcagaaaca-cgtttcagtcg--gcccagcatgtcctcaatggcttagagaagagctcactgg Guinea pig NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN Zebrafish ====================================================================== Mouse agcaggaagccaagtacggccaggtgag Rat agcaagaagccaagtacggccaggtgag GCF_003668045 agcaggaggccaagtacggccaggtgag Beaver agcaggaagccaagtacggccaggtgag Squirrel agcaggaagtcaagtacggccaggtgag Rabbit agcaggaagccaagtacgggcaggtgag Pika aacaggaggccaagtacgggcaggtgag Human agcaggaagccaagtacggtcaggtgag Chimp agcaggaagccaagtacggtcaggtgag Bonobo agcaggaagccaagtacggtcaggtgag Gorilla agcaggaagccaagtacggtcaggtgag Rhesus agcaggaagccaagtacggtcaggtgag Marmoset agcaggaaaccaagtacagtcaggtgag Tarsier agcaggaagccaagtacggtcaggtgag Bushbaby agcaggaagccaagtacggtcaggtgag Tree shrew agcaggaagccaagtacggtcaggtgag Malayan flying lemur agcaggaagccaagtacggccaggtgag Pig agcaagaagccaagtacgctcaggtgag Dolphin agcaggaagccaagtacgctcaggtgag Cow agcaggaagccaagtacgcgcaggtgag Sheep agcaggaagccaagtacgcgcaggtgag Horse agcaggaggccaagtacgggcaggtgag Chinese pangolin agcaagaagccaagtacggtcaggtgag Dog agcaggaagccaagtacgctcaggtgag Hawaiian monk seal agcaggaagccaagtacggccaggtgag Hedgehog aacaagaagccaagtacggtcaggtgag Shrew agcaggaagccaagtacggtcaggtgag Elephant agcaggaagccaagtacggtcaggtgag Tenrec agcaggaagccaagtacggtcaggtgag Opossum agcaggaggtcaaatatggacaggtaag Chicken aacaggaggccaagtacagccaggtaaa X. tropicalis aacaggaggtcaagtacagccaggtaag Guinea pig NNNNNNNNNNNNNNNNNNNNNNNNNNNN Zebrafish ============================ Inserts between block 16 and 17 in window B D X. tropicalis 20321bp Alignment block 17 of 393 in window, 56746945 - 56746946, 2 bps B D Mouse ga B D Rat ga GCF_003668045 ga Beaver ga B D Squirrel ga B D Rabbit gc B D Pika ga B D Human ga B D Chimp ga B D Bonobo ga B D Gorilla ga B D Rhesus ga B D Marmoset ga B D Tarsier ga B D Bushbaby ga B D Tree shrew ga B D Malayan flying lemur ga B D Pig ca B D Dolphin ga B D Cow ga B D Sheep ga B D Horse ca B D Chinese pangolin ga B D Dog ga B D Hawaiian monk seal ga B D Hedgehog ga B D Shrew ga B D Elephant ga B D Tenrec ga B D Opossum ga B D Chicken g- B D Guinea pig NN B D Zebrafish == B D X. tropicalis == Inserts between block 17 and 18 in window B D Bushbaby 3bp B D Shrew 11bp B D Opossum 1351bp Alignment block 18 of 393 in window, 56746947 - 56746952, 6 bps B D Mouse ---ggagag B D Rat ---ggagag GCF_003668045 ---ggagag Beaver ---ggcgag B D Squirrel ---ggcgag B D Rabbit ---ggcgag B D Pika ---ggcgag B D Human ---ggcgag B D Chimp ---ggcgag B D Bonobo ---ggcgag B D Gorilla ---ggcgag B D Rhesus ---ggcgag B D Marmoset ---ggcgag B D Tarsier ---ggcgag B D Bushbaby ---ggcgag B D Tree shrew ---ggcgag B D Malayan flying lemur ---ggcgag B D Pig ---ggcgag B D Dolphin ---cgcgag B D Cow ---ggcggg B D Sheep ---ggcggg B D Horse ---ggcgcg B D Chinese pangolin ---ggtgag B D Dog ---ggc-ag B D Hawaiian monk seal ---ggcgag B D Hedgehog ---ggcggg B D Shrew ---ggtggg B D Elephant ---ggcgag B D Tenrec ---ggtgcg B D Chicken gtagac--- B D Guinea pig NNNNNNNNN B D Zebrafish ========= B D X. tropicalis ========= B D Opossum ========= Alignment block 19 of 393 in window, 56746953 - 56746984, 32 bps B D Mouse ggct-tggc-c----ag--gc-agctgcc-tggtgtgggggg B D Rat ggct-tagc-t----cg--gcgggctgcc-tgctgttgggga GCF_003668045 ggct-tggc-c----ag--gcaggcctcc-tggtgcggggga Beaver ggct-tggc-c----ag--gtgggccgcg-tggcggcggggg B D Squirrel ggcc-tggc-c----ag--gtgggccgcg-cgccg--agggg B D Rabbit ggcc-gggg-c----ag--gtgggccgcg-tggcggctgggt B D Pika cacc-agggcc----ag--gggggccaagagggccgcggggt B D Human ggtc-aggc-c----ag--gtgggccgcg-tggcggcgggga B D Chimp ggtc-aggc-c----ag--gtgggccgcg-tggcggcgggga B D Bonobo ggtc-aggc-c----ag--gtgggccgcg-tggcggcgggga B D Gorilla ggtc-cggc-c----ag--gtgggccgcg-tggcggcgggga B D Rhesus ggtc-aggt-c----ag--gtgggtcgct-tggcggcaggga B D Marmoset gtcc-cggc-c----ag--gtggaccgcg-tggcgccgggga B D Tarsier ggcc-aggc-c----ag--gtgggctgcg-tggcagcgggga B D Bushbaby cgcc-cggc-c----at--ttgggccgcg-tggcggcggggg B D Tree shrew ggcc-cagc-c----ag--gtgggccgcg-tggcgacggggg B D Pig ggcc-ccgc-c----gg--gtgggccgcg-ggg--------g B D Dolphin ggcc-ccgc-c----gg--gtgggccgcg-ggg--------g B D Cow ggcc-ccgc-c----gg--gtgggccgcg-gcg--------g B D Sheep ggcc-ccgc-c----gg--gtgggccgcg-ggg--------g B D Horse ggccgccgg-c----ggccgcgggcggcg-ggg--------- B D Chinese pangolin ggcc-ccgt-c----gg--gtgggcagca-gggcagcgggcg B D Dog ggcc-ccgc-c----gg--ctgcgccgcg-tggcggc-cggg B D Hawaiian monk seal ggcc-ccgc-c----gg--gtgggccgct-tggcggcggggg B D Hedgehog gaga-catg-t----gg-------ctgct-gaa--------- B D Shrew tggg-cgcg-c----gg-------ccacg-gga--------- B D Elephant ggtc-gggc-cgcgtgg--ggccgcggc--ggcgagcggggg B D Tenrec gctc-gggc-c----gg--ggccgctgcg-ggctcggggagg B D Chicken -ggc-cggc-c----gg--gtggg----g-gggtgcgtgggg B D Guinea pig NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN B D Zebrafish ========================================== B D X. tropicalis ========================================== B D Opossum ========================================== B D Malayan flying lemur NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN Inserts between block 19 and 20 in window B D Hedgehog 16bp B D Shrew 1bp B D Chicken 7572bp Alignment block 20 of 393 in window, 56746985 - 56746986, 2 bps B D Mouse tt B D Rat tt GCF_003668045 tt Beaver cg B D Squirrel tt B D Rabbit tt B D Pika tg B D Human tt B D Chimp tt B D Bonobo tt B D Gorilla tt B D Rhesus tt B D Marmoset tt B D Tarsier tt B D Bushbaby tt B D Tree shrew tt B D Pig tc B D Dolphin tt B D Cow tt B D Sheep tt B D Horse -t B D Chinese pangolin tt B D Dog tt B D Hawaiian monk seal tc B D Elephant c- B D Tenrec c- B D Guinea pig NN B D Hedgehog == B D Zebrafish == B D X. tropicalis == B D Opossum == B D Chicken == B D Shrew == B D Malayan flying lemur NN Inserts between block 20 and 21 in window B D Human 1bp B D Chimp 1bp B D Bonobo 1bp B D Gorilla 1bp B D Rhesus 1bp B D Marmoset 1bp B D Tarsier 1bp B D Bushbaby 1bp B D Tree shrew 14bp B D Pig 1bp B D Dolphin 1bp B D Cow 1bp B D Sheep 1bp B D Horse 1bp B D Chinese pangolin 1bp B D Dog 1bp B D Hawaiian monk seal 1bp Alignment block 21 of 393 in window, 56746987 - 56747007, 21 bps B D Mouse --------gggggttggggg-at-gaaggat B D Rat ----------------ggag-at-gagggac GCF_003668045 ---------------gggag-at-ggaggac Beaver --------------tgggag-tt-ggaggac B D Squirrel --------------tgggag-gt-ggaggac B D Rabbit ---------------gggcg-gt-ggaggac B D Pika ---------------gggcc-at-ggaggac B D Human ---------------aggcg-at-ggaacac B D Chimp ---------------aggcg-at-ggaacac B D Bonobo ---------------aggcg-at-ggaacac B D Gorilla ---------------aggcg-at-ggaacac B D Rhesus ---------------aggcg-at-ggag-ac B D Marmoset ---------------aggcg-ataagaagac B D Tarsier ---------------gggcg-at-ggagtac B D Bushbaby ---------------gggcg-at-ggaggac B D Pig ---------------gggcg-ac-gcaggcc B D Dolphin ---------------gggcg-ac-ggaggcc B D Cow ---------------gggcg-ac-ggagg-c B D Sheep ---------------gggcg-ac-ggagg-c B D Horse ---------------gggcg-ct-gcaggac B D Chinese pangolin ---------------gggcg-at-g-aggac B D Dog ---------------gcgcg-ac-ggaggac B D Hawaiian monk seal ---------------gggcg-ac-gggggac B D Shrew ---------------cgaag-at-gccaggc B D Elephant gaccggctta-----gggcg-ag-ggag--- B D Tenrec g------tgg-----gggcgcag-cgcg--- B D Guinea pig NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN B D Tree shrew =============================== B D Hedgehog =============================== B D Zebrafish =============================== B D X. tropicalis =============================== B D Opossum =============================== B D Chicken =============================== B D Malayan flying lemur NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN Inserts between block 21 and 22 in window GCF_003668045 15bp Beaver 16bp B D Squirrel 16bp B D Rabbit 16bp B D Pika 16bp B D Human 22bp B D Chimp 16bp B D Bonobo 16bp B D Gorilla 16bp B D Rhesus 16bp B D Marmoset 16bp B D Tarsier 24bp B D Bushbaby 16bp B D Pig 7bp B D Dolphin 16bp B D Cow 16bp B D Sheep 16bp B D Horse 17bp B D Chinese pangolin 16bp B D Dog 15bp B D Hawaiian monk seal 15bp B D Shrew 16bp Alignment block 22 of 393 in window, 56747008 - 56747050, 43 bps B D Mouse ------------------gcctc----------------------------------gaag-gggagaag B D Rat ------------------gcctt----------------------------------gaagagggagaag GCF_003668045 ------------------gcctc----------------------------------gacg-gagagaaa Beaver ------------------gcttt----------------------------------gacg-gacagaag B D Squirrel ------------------gccct----------------------------------aacc-aagaggaa B D Rabbit ------------------gcctc----------------------------------gagc-gaggggag B D Pika --------------------------------------------------------------gaggcaag B D Human ------------------gcttc----------------------------------ccgc-gagagaag B D Chimp ------------------gcttc----------------------------------ccgc-gagagaag B D Bonobo ------------------gcttc----------------------------------ccgc-gagagaag B D Gorilla ------------------gcttc----------------------------------ccgc-gagagaag B D Rhesus ------------------gcttc----------------------------------ccgc-gagagaag B D Marmoset ------------------gcctc----------------------------------ccgg-gagaaaaa B D Tarsier ------------------gcttc----------------------------------ggtc-gagagaag B D Bushbaby ------------------gcctcgactcactgctgtcactatgcggatccctcgtagttgg-gggcgaaa B D Tree shrew ------------------gcctc----------------------------------gacg-gagggaag B D Pig ---------------------------------------------------------------------- B D Dolphin ------------------acctc----------------------------------gaccgaggagagg B D Cow ------------------gcctc----------------------------------gaccgaggagaag B D Sheep ------------------gcctc----------------------------------gaccgaggggaag B D Horse ------------------acctc----------------------------------gaccgaggggcag B D Chinese pangolin ------------------gcttc----------------------------------caccaaggggcag B D Dog ------------------gcctc----------------------------------gacc-aggggaag B D Hawaiian monk seal ------------------gcctc----------------------------------gacctaggggaag B D Hedgehog ------------------gccca----------------------------------ccagggaaggaag B D Shrew ------------------ccctg----------------------------------cacttaagaggag B D Elephant gacccaggtcctttctgagcctc----------------------------------gaccgaggggaag B D Tenrec gacccgggccctctctgggcggt----------------------------------cgtcg------ag B D Guinea pig NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN B D Zebrafish ====================================================================== B D X. tropicalis ====================================================================== B D Opossum ====================================================================== B D Chicken ====================================================================== B D Malayan flying lemur NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN Mouse ctcaggctgg-cgaccc-tctggggcc---------------g Rat t---ggctgc-cgaccc-actggggcc---------------- GCF_003668045 t------------gccc-actggtgcc---------------a Beaver cccagccggg-cgaccc-gttgcggctggatccggactgaacg Squirrel cccaggctga-ggacct-gctgctgcc---------------a Rabbit cccgggccgg-cgacccggctgctgac---------------a Pika cccgagctggtcacccccgttggtgcc---------------a Human cccaggctgg-cgtccc-tttgctgct---------------a Chimp cccaggctgg-cgtccc-tttgctgct---------------a Bonobo cccaggctgg-cgtccc-attgctgct---------------a Gorilla cccaggctgg-cgtccc-tttgctgct---------------a Rhesus cccaggctgg-cgcccc-tttgctgct---------------a Marmoset cccaggcccg-cgccca-tttgctgct---------------a Tarsier cccaggcccg-cg-----gttgctgac---------------a Bushbaby ttgaggtccc-agcgcc-ttgacaccc---------------a Tree shrew cccgggctgg-cgaccc-tttgctgcc---------------a Pig -ccaggccga-ctaccc-ctggaggcc---------------a Dolphin cccaggtcca-ctcccc-gtggcggcc---------------a Cow ccctggccgc-ctcccc-gtgacggcc---------------a Sheep ccctggccgc-ctcccc-gtgacggcc---------------a Horse tccaggccga-ggaccc-gtcgcggcc---------------a Chinese pangolin cccagaccgg-ctacac-gtcgccgcc---------------g Dog ccgcggccga-cccccc-gccaatgcc---------------g Hawaiian monk seal cccaggccga-ccaccc-gtcactgcc---------------g Hedgehog ----ggtcaa-gctatg-tcggccacc---------------c Shrew ----ggcc----ccctc-gcggcggcc---------------c Elephant cccaggccga-cctccc-gggactgcc---------------t Tenrec cccagcccgg-tcccct-ggg---gcc---------------t Guinea pig NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN Zebrafish =========================================== X. tropicalis =========================================== Opossum =========================================== Chicken =========================================== Malayan flying lemur NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN Inserts between block 22 and 23 in window B D Chinese pangolin 807bp B D Hedgehog 22bp B D Shrew 16bp Alignment block 23 of 393 in window, 56747051 - 56747249, 199 bps B D Mouse -------------------------gga----------------ggcgga-accc------ggctaggct B D Rat -------------------------gga----------------gatgga-tccc------gggttggct GCF_003668045 -------------------------gga----------------gatggg-tccc------aggttgact Beaver -------------------------ggg----------------gctcgg-gcct------tggaaggcg B D Squirrel -------------------------cta----------------gccgga-atcc------cagtcgatg B D Rabbit -------------------------gga----------------gcccgacgctcagttgctggggggcg B D Pika -------------------------gga----------------acccga-gttc--------------- B D Human -------------------------cga----------------gccaga-tcct------tcgtggact B D Chimp -------------------------cga----------------gccaga-tcct------tcgtggact B D Bonobo -------------------------cga----------------gccaga-tcct------tcgtggact B D Gorilla -------------------------cga----------------gccaga-tcct------tcgtggacc B D Rhesus -------------------------cca----------------gtcaga-tcct------tcgtggact B D Marmoset -------------------------cca----------------gccaga-tcct------ctgtgcttt B D Tarsier -------------------------cga----------------gccggg-gccc------cggttgatt B D Bushbaby -------------------------ctagggtcggggagcgctcgccagg-gcac------atacagact B D Tree shrew -------------------------ctt----------------gtcgga-ttcc------acgttgatt B D Pig -------------------------cga----------------gcctga-agcc------gaggtgacg B D Dolphin -------------------------cga----------------gcccca-agcc------ggggcaatg B D Cow -------------------------cga----------------gcccca-ggcc------acggcggcg B D Sheep -------------------------cga----------------gccccg-ggcc------agggcggcg B D Horse -------------------------cga----------------gcccga-tgcc------cggttgccc B D Dog -------------------------gga----------------gcccat-t-cc------gggtcgggc B D Hawaiian monk seal -------------------------gga----------------gtccta-t-cc------cggtcggct B D Hedgehog --------------------------gg------------------c------tc------agatcctcc B D Shrew --------------------------gg----------------gcc------cc------aggcccccg B D Elephant cgagccttatccgggcagattggggcgt----------------gaccaa-agcc------cgg-ccttc B D Tenrec cgagct-----------------ggcct----------------ggcgca-aacc------cggaccccc B D Guinea pig NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN B D Zebrafish ====================================================================== B D X. tropicalis ====================================================================== B D Opossum ====================================================================== B D Chicken ====================================================================== B D Chinese pangolin ====================================================================== B D Malayan flying lemur NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN Mouse gagtctg--------ggcc-taggg--ct-------------------------------------gggc Rat gagtctg--------ggct-gatgc--ct-------------------------------------gggt GCF_003668045 aagtctg--------ggct-gaagt--tt-------------------------------------gagt Beaver gagtgag--------gcct-ccacc--ctgcca--------------------------------agggc Squirrel gaggcaggacag--aggct-gctgc--ctccga------------------------gg----gcagagt Rabbit ggacggc--------ggtt-cgggc--ctccga------------------------gg----gcggagc Pika -----ga--------ggct-cgggc--ctgaga------------------------gggagcgcagagt Human ggggcgaagcag--aggcc-tgagc--cttgga------------------------ag----gcggagc Chimp ggggcgaagcag--aggcc-tgagc--cttgga------------------------ag----gcggagc Bonobo ggggcgaagcag--aggcc-tgagc--cttgga------------------------ag----gcggagc Gorilla ggggcgaagcag--aggcc-tgagc--cttgga------------------------ag----gcggagc Rhesus ggggctaagcag--aggcc-cgagc--cttgga------------------------ag----gcggagc Marmoset ggggtgaaacag--aggcc-cgggc--cttcga------------------------ag----gcggagc Tarsier gggagggaacag--aggtc-cg-gc--ctcccg------------------------ag----gcagagc Bushbaby ggggtgccagct--aggc------c--cttggg------------------------aa----gc----- Tree shrew ggggaggaacag--aggcc-cgggc--cttcct------------------------gg----gcggagt Pig gggctg--------aggcc-tcgac--ccccg------------------------------------gc Dolphin ggggcgggacag--aggcc-cggac--ccgcga------------------------gg----gcgtagt Cow ggggcgggaca---acgcc-cagac--gcgcga------------------------gg----gcggggt Sheep gggccgggacgggtacgcc-cagacgggcgcga------------------------gg----gcgggtt Horse ggcgcgggacag--aggcc-c-gac--cctcga------------------------gg----gcgctgt Dog gaggcgggaccg--gggcc-cggag--cttccg------------------------gg----gcgcagt Hawaiian monk seal gaggcgggaccg--aggcc-cggac--cgtccg------------------------gg----gcggagt Hedgehog agggcagagtag--aggcc-agact--cctccc------------------------c------------ Shrew acgacc---tcg--aggac-aggac--ccccgt------------------------cg----c------ Elephant gaggcggagccg--aggcctcggcc--ctcgcccccgggagctcagagccctggtcggg----acgtaag Tenrec gcggtggagccc--aggcc-cgggc--ctccccgcggggtgc---------------gg----gcgcacg Guinea pig NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN Zebrafish ====================================================================== X. tropicalis ====================================================================== Opossum ====================================================================== Chicken ====================================================================== Chinese pangolin ====================================================================== Malayan flying lemur NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN Mouse aaaagcc-------tggc-atccagcc-----------------------------------------gc Rat taaagcc-------tagc-atcccgcc-----------------------------------------gc GCF_003668045 agaagtc-------taac-atcccgct-----------------------------------------gc Beaver cgcggcctccgggatggt-ggctcgcc-----------------------------------------gg Squirrel tgaggcc---------ac-gaccc-ct-----------------------------------------tc Rabbit tgaggcc-------tcga-ccctcgcc-----------------------------------------ag Pika tgaggcc-------tgga-tc------------------------------------------------- Human tggggcc-------tcga-cccccgccaggggccgg------------------gagcgctcgtcagggc Chimp tggggcc-------tcga-cccccgccaggggccgg------------------gagcgctcgtcagggc Bonobo tggggcc-------tcga-cccccgccaggggccgg------------------gagcgctcgtcagggc Gorilla tgggacc-------tcga-cccccgccaggggccgg------------------gagctctcgtcagggc Rhesus tggggcc-------tcga-cccctgccaggggtcgg------------------gagagctcgccagggc Marmoset ttgggcc-------tcaaccccccgccaggggccgggagcgctcgccagggcgcggg------------- Tarsier ggaggcc-------tcga-cccccgccagggtcccg------------------gggcgctcg-cacagc Bushbaby -----------------a-cccccaggcctgtttgg--------------------------------cc Tree shrew tgaggtt-------tcgt-cccccgccgggaggcta------------------ccgcgcgctccgaggc Pig -cgggcc-------ccgg-agcggcgg------------------------------------------- Dolphin -gaggcc-------tcga-ccccc---------------------------------------------- Cow -gaggcc-------tcga-cccctcgg------------------------------------------- Sheep -gaggcc-------tcga-cccgc--g------------------------------------------- Horse ggaggcc-------tcg--ccccgcgccg---------------------------------------gg Dog tgaggcc-------tcga-cccccccccc---------------------------------------cc Hawaiian monk seal tgaggcc-------tcga-ccccccgc------------------------------------------- Hedgehog -----ct-------ccgc-ccgaggtcgg---------------------------------------ga Shrew -gacgcc-------ccgc-cagag---------------------------------------------- Elephant -ggggct-------tcgg-gccgcggc---------------------------------tccccgaggc Tenrec tggggct-------gcga-ac----------------------------------------------ggt Guinea pig NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN Zebrafish ====================================================================== X. tropicalis ====================================================================== Opossum ====================================================================== Chicken ====================================================================== Chinese pangolin ====================================================================== Malayan flying lemur NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN Mouse gc-ct-----------gtggcc-cc------------------cag------------------------ Rat gc-ct-----------gtgg-c-tc------------------caa------------------------ GCF_003668045 ac-gt-----------ttggcc-cc------------------cag------------------------ Beaver gc--------------gcgacc-ctggg---------------aag------------------------ Squirrel ac-cc-----------gcgccc-gc------------------cag------------------------ Rabbit ga--------------gtgggc-ctgggt--------------cag------------------------ Pika ----------------gctggt-ccg-----------------ccc------------------------ Human gc-tg-----------ggggtc-tggggc------------ggcag-ctccccggggcgaggctctggga Chimp gc-tg-----------ggggtc-tggggc------------ggcag-ctccccggggcgaggctctggga Bonobo gc-tg-----------ggggtc-tggggc------------ggcag-ctccccggggcgaggctctggga Gorilla gcggg-----------ggggtc-tggggc------------ggcag-ctccccggggcgaggctctggga Rhesus gc-gg-----------ggggtc-tggggc------------ggtgg-ctccccggggcgcggctctggga Marmoset ------------------ggtc-tggggc------------ggccg-ctccccggggcgcggctctggga Tarsier gc-gc-----------ggggtcagggggc------------ggcggcccccccgaggcgtggccctggga Bushbaby gc-tg-----------gacatt-ttagaa------------gtccg------------------------ Tree shrew gc-tc-----------ggggtc-tccggc------------ggcgg-ct-ctcggggcgcagcacttgga Pig -t-tg-----------c----c-cgaagc-------------gctg-----------------ccctgga Dolphin ------------------------------------------gcgg-----------------ccctgga Cow -c-tg-----------gaggcc-cggggc------------ggcgg-----------------ccctgga Sheep -c-cg-----------g----c-cggagc-------------gcgg-----------------gcctgga Horse cc-gg-----------gggcct-gggaggcggctccccgggcgcgg------------------cctgga Dog gc-gc-----------ccgccc-ccgcgcccg-----cccccgcgg--------------------tgga Hawaiian monk seal -c-ag-----------gagccc-aggagcccggggtcctggggcgg--------------------tgga Hedgehog tc-tggggcagaggcagctccc-taaggc-------------cggg-----------------ccctgga Shrew ----------------gctccc-cgaggc-------------ctgg-----------------tttcgga Elephant ag-gc-----------gcggcc-cgggaa----------------g------------------------ Tenrec cc-gg-----------gcggcc-gggccc----------------g------------------------ Guinea pig NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN Zebrafish ====================================================================== X. tropicalis ====================================================================== Opossum ====================================================================== Chicken ====================================================================== Chinese pangolin ====================================================================== Malayan flying lemur NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN Mouse --cccttcca----gg----ccag-cc-------gggttt------------------------------ Rat --accttcca----gc----ccag-cc-------gggttc------------------------------ GCF_003668045 --ccctttcactacac----ctag-cc-------gatctc------------------------------ Beaver --cgcctcca----gg----ccgg-tt-------tggcctcc---------------------------- Squirrel ---------a----gg----ccag-ga-------gcgctcgccag------------------------- Rabbit --cgcctgca----gg----cccg-tg-------tggcttcg---------------------------- Pika --cgcctgca----gg----ccc--cg-------tggcttcc---------------------------- Human agcgcctcca----gg----cctg-tc-------ggcctccgggagcttggggaggcggctcccgaagcc Chimp agcgcctcca----gg----cctg-tc-------ggcctccgggggcttggggaggcggctcccgaagcc Bonobo agcgcctcca----gg----cctg-tc-------ggcctccgggggcttggggaggcggctcccgaagcc Gorilla agcgcctcca----gg----cctg-tc-------ggcctccgggggcttgggga---------------- Rhesus agcgcctcca----gg----cctc-tc-------ggcctctgggggcttggagaggcggctcccgaagcc Marmoset agcgcctcca----gg----cctt-tc-------ggtctctggaggcttggggaggcggctcccgaag-c Tarsier agcgcctcta----ag----cctgctt-------ggcctttgggggctcggggaggcctcgcctgagccc Bushbaby --tgcctaaa----gc----ccac-tc-------ggctcctcgca------------------------- Tree shrew agagcctcca----gg----tctgttt-------ggcccctggaggt--------------------gcc Pig aatgcgttcg----gg----cctattt-------ggct-ccggaggctcggggaggccgcgcc------- Dolphin agcgcctccg----gg----cctgctc-------ggccgctggaggcgcggggaggtcgcgcc------- Cow agcgcctcgg----gg----cc-tgtt-------ggcc-----aaac------ggcttgcgcc------- Sheep agcgcctcgg----gg----ccttgtg-------ggcc-----aaac-----gggcttgcgcc------- Horse ggcccctgca----gg----cctctgg-------ggccggt---ggagcggggaggccgcgcc------- Dog ggcgccgccg----gg----cccgcct-------ggcctccgc-ggcgcggggaggcggcgcc------- Hawaiian monk seal agcgcctcca----gg----cctgcgt-------ggcctctgcaagcgccgggaggccgcgcc------- Hedgehog agtgccccca----aa----cctactt-------ggcctctggaggctcaggcaggccgagc-------- Shrew agcagccccg----caggcgcccgctgaccaagaggccgcaggaggcgcggggaggccgcgc-------- Elephant --cgcttcca----gg----cctgctt-------ggcctctggaggg-----gaggccgcgtg------- Tenrec --cg----------------------t-------ggcctcgggaggagccgcgaggccgcatc------- Guinea pig NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN Zebrafish ====================================================================== X. tropicalis ====================================================================== Opossum ====================================================================== Chicken ====================================================================== Chinese pangolin ====================================================================== Malayan flying lemur NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN Mouse ------------------------------------------a--g--tcaagc----ca--------ag Rat ------------------------------------------a--g--tctatc----ca--------ag GCF_003668045 ------------------------------------------a--g--ttaacc----ca--------ag Beaver ----------------------g------------------ga--g--cgcccg----ca--------gg Squirrel ----------------------g------------------gc--g--tgtgcc----ct--------gg Rabbit ------------------------------------------a--g--agcgca----cg--------ga Pika ------------------------------------------c--c--agcgcg----cg--------gg Human ctttcggcggctctcgttggggg----------------taga--g--ttaacc----aa--------ag Chimp ctttcggcggctctcactggggg----------------taga--g--tcaacc----aa--------ag Bonobo ctttcggcggctctcactggggg----------------taga--g--tcaacc----aa--------ag Gorilla -----ggcggctgtcattggggg----------------taga--g--ttaacc----aa--------ag Rhesus ctttcagcggctctcattgaggg----------------taga--g--ttaacc----aa--------ag Marmoset ctttcagcgactcatattggggg----------------taga--g--ttagcc----aa--------ag Tarsier -----------------tagtggctgcttgccttgaggctaga--t--ttaacc---aaa--------aa Bushbaby -----------------cggggc----------------taga--g--ttaacc----aa--------ag Tree shrew -----------------cggagg----------------ccgt--gcctgaacctttcag--------tg Pig ---------------------------------------tgaa--g--cccatt----cg---------- Dolphin ---------------------------------------tgaa--g--ccttt---------------aa Cow ---------------------------------------ccag--c--cctctc----cgcggctcg-ag Sheep ---------------------------------------cggagcc--cctctc----cgcggctcgaag Horse ---------------------------------------tgag--c--cttcct----gc--------cg Dog ---------------------------------------tgaa--g--cccac----------------- Hawaiian monk seal ---------------------------------------cgaa--g--ccca------------------ Hedgehog ----------------------------------------aag--g--ca-------------------- Shrew ----------------------------------------gaa--g--cgctcg----ga--------gc Elephant ---------------------------------------tcaa--g--gccttt----ct--------gc Tenrec ---------------------------------------tcag--g--ccttcc----ct---------- Guinea pig NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN Zebrafish ====================================================================== X. tropicalis ====================================================================== Opossum ====================================================================== Chicken ====================================================================== Chinese pangolin ====================================================================== Malayan flying lemur NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN Mouse g--------------------------ccg------agct-------------tt--gg----------- Rat g--------------------------ccg------agct-------------tc--gg----------- GCF_003668045 g--------------------------ccg------agct-------------tc--gg----------- Beaver c--------------------------ctgtccgctaccc-------------cc--gg----------- Squirrel g--------------------------aag------cgct-------------ttcagg----------- Rabbit ggccgcaactgaagccccttcggctgctcg------cgcc-----------------gg----------- Pika g--------------------------ccg------tgcc-----------------gg----------- Human a--------------------------agg------cgct-------------tc--tg----------- Chimp a--------------------------agg------cgct-------------tc--tg----------- Bonobo a--------------------------agg------cgct-------------tc--tg----------- Gorilla a--------------------------agg------cgct-------------tc--tg----------- Rhesus a--------------------------agg------cgct-------------tc--cg----------- Marmoset a--------------------------aga------ccct-------------tc--cg----------- Tarsier a--------------------------agg------cgct-------------tc--cg---------a- Bushbaby a--------------------------aga------gtct-------------tc--ca----------- Tree shrew t--------------------------gtt------cgca-------------tc--cg----------- Pig ---------------------------gcg------gctc-------------gc--gt-cgggccccgc Dolphin c--------------------------gcg------gctc-------------gc--gtcggggtacac- Cow t--------------------------cgg------ggct-------------ac--ag----------- Sheep t--------------------------cgg------ggcc-------------ac--at----------- Horse c--------------------------tct------gctc-------------gc--cg----------- Dog ------------------------------------------------------c--cg----------- Hawaiian monk seal ---------------------------------------------------------cg----------- Hedgehog ------------------------------------------------------t--ag----------- Shrew t--------------------------gcg------gccg-------------tc--gg----------- Elephant tgctggtac------------------aag------ggctggagttatggagatg--cg----------- Tenrec -----------------------------g------ggccggcg---------ag--cg----------- Guinea pig NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN Zebrafish ====================================================================== X. tropicalis ====================================================================== Opossum ====================================================================== Chicken ====================================================================== Chinese pangolin ====================================================================== Malayan flying lemur NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN Mouse --cacggcc-------a--gg---------ctt--tg---ggg---ttc------------ga------g Rat --cacggcc-------a--ga---------ctt--tg---ggg---ttc------------ag------a GCF_003668045 --agtggcc-------g--gg---------ctt--tg---ggc---ttt------------ag------a Beaver --cggggct-------g--ga---------------g---gtc---acc------------aa------a Squirrel --cctgttt-------g--ga---------cc----g---gg---------------------------- Rabbit --ccagggt-------t--aa---------ccg--ca---gca---g----------------------- Pika --ct------------------------------------------------------------------ Human --aagggcc-------g--agcggagcagccct--gg---ggc---ctc------------ag------a Chimp --aagggcc-------g--ggtggagcggccct--gg---ggc---ctc------------ag------a Bonobo --aagggcc-------g--ggcggagcggccct--gg---ggc---ctc------------ag------a Gorilla --aagggcc-------g--ggcggagcagccct--gg---ggc---ctc------------ag------a Rhesus --aagggcc-------a--ggcggagcagccct--gg---ggc---ctc------------ag------a Marmoset --aagggcc-------g--ggtcgagcaaccct--gg---ggc---ttc------------gg------a Tarsier --aaaggct-------g--ggcctcgcggccct--gg---ggt---ctc--------------------- Bushbaby --atagggc-------g--agc-aagcag-cct--gg---gat---ccc------------cg------a Tree shrew --gctggc------------gttgaccaaagaa--gg---cgc---ttctccatgctgagccg------a Pig actt--acc-------c--gggaaggcggctcc--ga---ggg---g-c------------gg------g Dolphin --tt--acc-------c--gggaaggcgcctcc--ga---ggg---gcc------------gg------g Cow --tc--acc-------t--gggacggcgtctcc--ga---ggg---gcc------------ag------g Sheep --tc--acccc--ggac--gggacggcgtctcccgag---ggg---gcc------------ag------g Horse --gc--gctgcagggac--gggcaggcgctccg--gg---agg---gcc------------cg------g Dog --gccggccgctcgcac--gggctggcgagccg--gg-cctgg---gtc------------ct------c Hawaiian monk seal --gc--gctgctcgcacaggggctggtgaccca--cg-cgaggcgcgtc------------cg------c Hedgehog --ag--acc-------c--gg--------------gggaaggt---gct------------cgcaaaagg Shrew --gg--gcc-------c--ga----gtgtctcc--gggacggc---gcg------------cgcgc---g Elephant --aaaggca-------c--ggccaggtggcctg--gg---gcc---ccc------------ag------a Tenrec --ccaggcc-------c--ggc------gcccg--gg---gcc---ccg------------gg------a Guinea pig NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN Zebrafish ====================================================================== X. tropicalis ====================================================================== Opossum ====================================================================== Chicken ====================================================================== Chinese pangolin ====================================================================== Malayan flying lemur NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN Mouse -----gggc------------------------------gc-------c-------------c----cg- Rat gcagcgagc------------------------------gc-------c-------------c----gg- GCF_003668045 g----cagc------------------------------gc-------c-------------c----tg- Beaver ga---aggg------------------------------gc-------c-------------t----cg- Squirrel -----gagc------------------------------gc-------c--------------------- Rabbit -----gagc------------------------------gt-------g-------------c------- Pika ---------------------------------------------------------------------- Human g----ccgc------------------------------gc-------c-------------ttca-cg- Chimp g----ccgc------------------------------gc-------c-------------ttca-cg- Bonobo g----ccgc------------------------------gc-------c-------------ttca-cg- Gorilla g----ccgc------------------------------gc-------c-------------ttca-cg- Rhesus c----ccgc------------------------------ac-------c-------------ttca-cg- Marmoset g----ccg--------------------------------c-------c-------------tcca-cg- Tarsier ----------------------------------------------------------------ca-cg- Bushbaby g----cagc------------------------------gc-------t-------------tcca-ct- Tree shrew g----cggccgggttcccggggcagcgcgggcccccacggc-------c-------------tcca-cg- Pig c----aagc------------------------------gg-------c-------------gatg-ggc Dolphin a----gagc------------------------------gg-------c-------------cgtg-gg- Cow c----gagc------------------------------gg-------c-------------cgtg-gg- Sheep c----ga-c------------------------------gg-------c-------------c----tg- Horse c----cagc------------------------------gg-------c-------------ctcc-tc- Dog g----gagc------------------------------gg-------c-------------ctccgtg- Hawaiian monk seal a----gggc------------------------------cgggcgaccc-------------cgctggg- Hedgehog c----gtgc------------------------------gg-------agccccctgcgtctctc--tg- Shrew g----gtgc------------------------------gg-------g-------------ctc--gg- Elephant g----caac------------------------------gc-------g-------------ggtg-gg- Tenrec c----ccgc------------------------------gc-------g-------------ggc--gg- Guinea pig NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN Zebrafish ====================================================================== X. tropicalis ====================================================================== Opossum ====================================================================== Chicken ====================================================================== Chinese pangolin ====================================================================== Malayan flying lemur NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN Mouse tt-----agt-----------g--------agctgc-g---cctggaggcctc----------------- Rat ct-----agc-----------g--------ggctgc-g---cctggag---------------------- GCF_003668045 cc-----agc-----------g--------ggctgcag---cctggacaccgc----------------- Beaver cc-----gactcggcttctcag--------cgcagc-g---ccgcggcctcgc----------------- Squirrel -------ggc-----------a--------ggccgc-g---cctgaagcccttccgttattcgcaaaggg Rabbit -------gaa-----------g--------ggccgc-g---t-------ccgt----------------- Pika -------------------------------gacgc-g---tt----aacctt----------------- Human cc-----cgc-----------g--------aaacgc-g-------------------------------- Chimp cc-----cgc-----------g--------aaacgc-g-------------------------------- Bonobo cc-----cgc-----------g--------aaacgc-g-------------------------------- Gorilla cc-----cgc-----------g--------aaacgc-g-------------------------------- Rhesus cc-----cgc-----------g--------aaacgc-g-------------------------------- Marmoset cc-----cgc-----------g--------aaatgc-c-------------------------------- Tarsier cc-----agc-----------g--------ggtcgc-g-------------------------------- Bushbaby cc-----tca-----------a--------aag----g-------------------------------- Tree shrew cc-----cgc-----------c--------aaatgc-g-------------------------------- Pig tcccc--agc-----------t--------gcgcgc-g---gcgcgag---------------------- Dolphin ttccc--agc-----------t--------gcgcgc-g---ggacgag---------------------- Cow ttccc--agc-----------t--------gcgcgc-g---cggcgag---------------------- Sheep ttccc--agc-----------t----------gcgc-g---cggcgag---------------------- Horse tccgccgagc-----------g--------cctgcc-g----aggtcg---------------------- Dog cccgcgaagc-----------g-------cacgccc-g----aggtcg---------------------- Hawaiian monk seal ttctcagggc-----------g--------acgccc-g---ccgagcg---------------------- Hedgehog acc----agc-----------a--------ccagct-ggcatgtcttc---------------------- Shrew gccgcggggc-----------g--------ccgtct-g-------------------------------- Elephant -------agc-----------gcctcggacgcccgc-g---acacgcgcgc------------------- Tenrec -------agc-----------g--------gcccgc-a---------gcgc------------------- Guinea pig NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN Zebrafish ====================================================================== X. tropicalis ====================================================================== Opossum ====================================================================== Chicken ====================================================================== Chinese pangolin ====================================================================== Malayan flying lemur NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN Mouse -------------------------------a----a-gccaga-gtcgc-a-- Rat --------------------------------------gccgga-gtcgc-a-- GCF_003668045 -------------------------------c----a-gctgga-gtcgc-a-- Beaver -------------------------------a----c-gccccaggtcgc-g-- Squirrel gctagaattaaccaaaaaaggaatttcctaaa----g-gccggg-gcctc-g-- Rabbit -------------------------------g----g-cctcgg-gtcgc-g-- Pika -------------------------------a----a-cctggg-gtcgc-a-- Human -------------------------------c----g-ccccgg-gtctc-g-- Chimp -------------------------------c----g-ccccgg-gtctc-g-- Bonobo -------------------------------c----g-ccccgg-gtctc-g-- Gorilla -------------------------------c----g-ccccgg-gtctc-g-- Rhesus -------------------------------c----g-caccgg-gtctc-g-- Marmoset -------------------------------c----g-ccccgg-gtctc-g-- Tarsier -------------------------------c----g-cccagg-gtcgc-g-- Bushbaby -------------------------------c----a-caggag-gtcgc-g-- Tree shrew -------------------------------c----g-cccgag-gtcgc-g-- Pig -------------------------------c----g-gcccgc-acgcc-c-- Dolphin -------------------------------c----g-gtctgc-acgcc-c-- Cow -------------------------------c----g-gcctgt-acgcc-c-- Sheep -------------------------------c----c-ggcggc-gcgac-a-- Horse -------------------------------g----g-ccgtgc-gca---c-- Dog -------------------------------c----g-gcctgc-gggtc-g-- Hawaiian monk seal -------------------------------c----acgcttgc-gggtctg-- Hedgehog -------------------------------c----a-ccctct-gccct-g-- Shrew -------------------------------c----a-gccgcg-aagct-c-- Elephant -------------------------------cctgaa-gtcggg-gccct-gcg Tenrec -------------------------------c----g-gccggt-ggatc-gcg Guinea pig NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN Zebrafish ====================================================== X. tropicalis ====================================================== Opossum ====================================================== Chicken ====================================================== Chinese pangolin ====================================================== Malayan flying lemur NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN Inserts between block 23 and 24 in window B D Pika 71bp B D Human 13bp B D Chimp 13bp B D Bonobo 13bp B D Gorilla 13bp B D Rhesus 13bp B D Marmoset 13bp B D Tarsier 9bp B D Bushbaby 8bp B D Tree shrew 12bp B D Pig 1bp B D Dolphin 1bp B D Cow 1bp B D Sheep 1bp B D Horse 1bp B D Dog 1bp B D Hawaiian monk seal 1bp B D Hedgehog 1bp B D Shrew 1bp Alignment block 24 of 393 in window, 56747250 - 56747257, 8 bps B D Mouse agg-cttgt------ B D Rat agg-cttgt------ GCF_003668045 agg-cttgt------ Beaver cggccctga------ B D Squirrel cag-cctgg------ B D Human -a------------- B D Chimp -a------------- B D Bonobo -a------------- B D Gorilla -a------------- B D Rhesus -g------------- B D Marmoset -a------------- B D Tarsier -a------------- B D Bushbaby -a------------- B D Pig ------agg------ B D Dolphin ------agg------ B D Cow ------agg------ B D Sheep ------agg------ B D Horse ------agg------ B D Dog ------ggg------ B D Hawaiian monk seal ------ggg------ B D Hedgehog ------aag------ B D Shrew ------agg------ B D Elephant -------gggactgc B D Tenrec -------ggca---- B D Guinea pig NNNNNNNNNNNNNNN B D Tree shrew =============== B D Pika =============== B D Zebrafish =============== B D X. tropicalis =============== B D Opossum =============== B D Chicken =============== B D Rabbit --------------- B D Chinese pangolin =============== B D Malayan flying lemur NNNNNNNNNNNNNNN Inserts between block 24 and 25 in window B D Pig 2bp B D Dolphin 2bp B D Cow 2bp B D Sheep 2bp B D Horse 2bp B D Dog 2bp B D Hawaiian monk seal 2bp B D Hedgehog 2bp B D Shrew 2bp Alignment block 25 of 393 in window, 56747258 - 56747297, 40 bps B D Mouse gg-----ga-ggctg-c----g---------------ggctc-------------c-tgtg--------- B D Rat gg-----ga-ggctg-c----g---------------gggtc-------------a-tgtg--------- GCF_003668045 gg-----gc-ggctg-c----g---------------ggc-c-------------c-cgtg--------- Beaver gg-----ga-ccctg-a----g---------------ggacc-------------c-tgtgggaccctgg B D Squirrel ggttctcag-aactg-c----gcccgacatggatcgcggcct-------------c-cgag---ccaggg B D Rabbit ----------agctg-c----acc-------------ggctc-------------c-cgca--------- B D Human -----ctgc-ggctg-c----g---------------gggtc-------------ctcacg--------- B D Chimp -----cggc-ggctg-c----g---------------gggtc-------------ctcacg--------- B D Bonobo -----cggc-ggctg-c----g---------------gggtc-------------ctcacg--------- B D Gorilla -----cggc-ggctg-c----a---------------gggtc-------------ctcacg--------- B D Rhesus -----cagc-ggctg-c----g---------------gggtc-------------ctcagg--------- B D Marmoset -----cggc-ggctg-t---gg---------------gggtc-------------ctcgcg--------- B D Tarsier -----ctgc--gctg-c----g---------------ggctc-------------ctggcg--------- B D Bushbaby -----ccgccggctg-c----a---------------gcgtc-------------cccgcg--------- B D Tree shrew ------ggc-gaacg-c----g---------------gggtc---------------cgtg--------- B D Malayan flying lemur ------ggc-ggcctcc----g---------------gggtc-------------ctcgcg--------- B D Pig --------------g-c----g---------------gccct----gcggct--cctcccg--------- B D Dolphin --------------g-c----g---------------ccgct----gcggct--cctcccg--------- B D Cow --------------g-c----g---------------gcgcc----gcggct--cctcccg--------- B D Sheep --------------g-c----g---------------gcgcc----gcgtct--actcccg--------- B D Horse --------------g-c----g---------------gggcc---------------cacg--------- B D Dog --------------g-c----g---------------gggcc-------------ctcgcg--------- B D Hawaiian monk seal --------------g-c----g---------------gggtc-------------cgcacg--------- B D Hedgehog --------------g-cagcag---------------aggccactggctgctgtcctcatg--------- B D Shrew --------------a-acgtgg---------------gggac-----caggcggccacgcg--------- B D Elephant ---------gggctg-c----c---------------ggggc-------------ctcgcg--------- B D Tenrec ---------gggcgg-t----c---------------gggcc-------------ggcagg--------- B D Guinea pig NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN B D Pika ====================================================================== B D Zebrafish ====================================================================== B D X. tropicalis ====================================================================== B D Opossum ====================================================================== B D Chicken ====================================================================== B D Chinese pangolin ====================================================================== Mouse -------------------------cac-----agaca--gc-------t-cc--------------ctg Rat -------------------------cac-----agaca--gc-------tccc--------------ccg GCF_003668045 -------------------------caa-----agaca--gt-------tccc--------------ctg Beaver ccaccg---------cgcctcgc-cctc-----ggaca--gt-------tccc--------------ctg Squirrel gcgcaggaggatggtcgctcggc-cctg-----gggga--cc-------ccgc--------------ctg Rabbit ---------------gcctccacgcccg-----agccc--gc-------ggcc--------------ctg Human -------------------------ttc-----ggact--tt-------ctct--------------ccg Chimp -------------------------ttc-----ggact--tt-------ctct--------------ccg Bonobo -------------------------ttc-----ggact--tt-------ctct--------------ccg Gorilla -------------------------ttc-----ggact--tt-------ctct--------------ccg Rhesus -------------------------ctc-----ggact--tt-------ccct--------------ccc Marmoset -------------------------ctc-----ggact--tt-------tgcc--------------ccc Tarsier -------------------------ctg-----ggaca--tt-------cccc--------------gcc Bushbaby -------------------------ctc-----ggccaggtc-------cgct--------------act Tree shrew -------------------------gtc-----ggaca--tttc-----tccc--------------act Malayan flying lemur -------------------------ctc-----ggaca--ctgc-----ccct--------------gcc Pig -------------------------tgc-----ggacg--gtcg--gcgccgc--------------ggc Dolphin -------------------------cgc-----gggcg--gt-------ccgc--------------ggc Cow -------------------------cat-----ggacg--gc-------ccgc--------------ggc Sheep -------------------------cgc-----ggacg--gt-------ccgc--------------ggc Horse -------------------------ctc-----ggagc--tgttgcgcgccct--------------ggc Dog -------------------------ccc-----ggcgg--gctctcgtgccgc--------------ggc Hawaiian monk seal -------------------------ctc-----ggaca--tttctcgggccgt--------------ggc Hedgehog -------------------------gta-----ggccg--cttcgcttcccac--------------tcc Shrew -------------------------gtgctcgcgtcca--ctccacccccagc--------------cca Elephant -------------------------ctt-----ggacg--tttcggtgactctcagaaaacgaacaaccg Tenrec -------------------------ctc------------ctgcggaagctcc--------------ctc Guinea pig NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN Pika ====================================================================== Zebrafish ====================================================================== X. tropicalis ====================================================================== Opossum ====================================================================== Chicken ====================================================================== Chinese pangolin ====================================================================== Mouse tc----g Rat tg----c GCF_003668045 cctggac Beaver cg-gtgg Squirrel tggcggg Rabbit cg----- Human g------ Chimp g------ Bonobo g------ Gorilla g------ Rhesus g------ Marmoset g------ Tarsier g------ Bushbaby t------ Tree shrew g------ Malayan flying lemur g------ Pig t------ Dolphin t------ Cow t------ Sheep t------ Horse t------ Dog t------ Hawaiian monk seal t------ Hedgehog a------ Shrew g------ Elephant ------- Tenrec ------- Guinea pig NNNNNNN Pika ======= Zebrafish ======= X. tropicalis ======= Opossum ======= Chicken ======= Chinese pangolin ======= Inserts between block 25 and 26 in window B D Human 4bp B D Chimp 4bp B D Bonobo 4bp B D Gorilla 4bp B D Rhesus 4bp B D Marmoset 4bp B D Tarsier 4bp B D Bushbaby 4bp B D Tree shrew 4bp B D Malayan flying lemur 4bp Alignment block 26 of 393 in window, 56747298 - 56747313, 16 bps B D Mouse t---ggcggacac----ca---------act-t B D Rat t---tccagacat----ca---------gct-t GCF_003668045 t---tccagagac----ca---------gct-t Beaver c---tccaggggc----aagaga----ggct-g B D Squirrel a---cctggagct----cc---------gac-c B D Guinea pig t---gtcggagag----ca---------gcg-c B D Rabbit g---atcagaaac----gagcaagcgtggct-c B D Human t---ctcgg--ac----aaacacgcttggcc-a B D Chimp t---ctcgg--ac----aaacacgcttggcc-a B D Bonobo t---ctcgg--ac----aaacacgcttggcc-a B D Gorilla t---ctcgg--ac----aaacacgcttggcc-a B D Rhesus t---ctcgg--ac----aaatccgcttggcc-a B D Marmoset t---ctcgg--ac----aaacccgcgtggtt-c B D Tarsier g---ctcagaaac----agacaagcgcggct-c B D Bushbaby t---ctaagacac----aaacaagcgtggct-t B D Tree shrew t---ctcggaaac----aaatgagcggggctcc B D Malayan flying lemur t-------------------------------t B D Pig c---cgcgacaag----aggcgc---------- B D Dolphin c---ccagagaac----gggcgc---------- B D Cow c---ccggggcac----aagcgc---------- B D Sheep c---cgcgggcac----aggcgc---------- B D Horse c---ccggaacac----aagcca---------- B D Dog c---cccgaagac----aaacaa---------- B D Hawaiian monk seal c---cccgaaagc----aaacaa---------- B D Hedgehog cgg-tcctaacac----acacag---------- B D Shrew c---tccaggcaccccaacacac---------- B D Elephant -tggcgtgt------------------------ B D Tenrec -tgcccagc------------------------ B D Pika ================================= B D Zebrafish ================================= B D X. tropicalis ================================= B D Opossum ================================= B D Chicken ================================= B D Chinese pangolin ================================= Inserts between block 26 and 27 in window B D Pig 5bp B D Dolphin 5bp B D Cow 5bp B D Sheep 5bp B D Horse 4bp B D Dog 5bp B D Hawaiian monk seal 5bp B D Hedgehog 2bp B D Shrew 2bp Alignment block 27 of 393 in window, 56747314 - 56747330, 17 bps B D Mouse gtcc-----g--------tccggcg-----agaat B D Rat ---------g--------tccggtg-----agaat GCF_003668045 ---------g--------tccggcg-----ataat Beaver ---------g--------acccgcg-----gtaat B D Squirrel ---------g--------ctccccg-----aaggt B D Guinea pig ---------gcgcggtgctgcggcg-----cggag B D Rabbit ---------g--------tcctgcg-----tggta B D Human ---------a--------tcctgcg---------- B D Chimp ---------a--------tcctgcg---------- B D Bonobo ---------a--------tcctgcg---------- B D Gorilla ---------a--------tcctgcg---------- B D Rhesus ---------g--------tcctgtg---------- B D Marmoset ---------c--------tcctgcg---------- B D Tarsier ---------g--------tctt--g---------- B D Bushbaby ---------g--------tcctgcg---------- B D Tree shrew ---------t--------ccttgcgagagt----- B D Malayan flying lemur ---------g--------tcctgcgataga----- B D Pig gctt-----g--------tcccgcg-----acagt B D Dolphin gctg-----g--------tcctgcg-----acggc B D Cow gcgg-----g--------tcccgcg-----acggc B D Sheep gcgg-----g--------ccccgcg-----acggc B D Horse gccg-----g--------tcctgcg-----acagt B D Chinese pangolin gctt-----g--------tcctgcg-----gtaat B D Dog gctt-----g--------ccctgcg-----acggc B D Hawaiian monk seal gctc-----g--------ccctgcg-----atagt B D Hedgehog gcct-----a--------tcctctg-----agagt B D Shrew gcctggcagg--------tcccgtg-----ctcgt B D Elephant ccta-----a--------catgaag---------- B D Tenrec gccg-----g--------ccacacg---------- B D Pika =================================== B D Zebrafish =================================== B D X. tropicalis =================================== B D Opossum =================================== B D Chicken =================================== Inserts between block 27 and 28 in window B D Rabbit 3bp Alignment block 28 of 393 in window, 56747331 - 56747497, 167 bps B D Mouse g-----g--aa--------gaggggcaaccagataaac--g-ta--------------ataaagttac-- B D Rat g-----g--aa--------gaggggcaaccagataaac--g-ta--------------ataaagttac-- GCF_003668045 g-----g--aa--------gaggtgcagccagataaat--g-ta--------------ataaacttac-- Beaver g----cc--gg--------gaggagcaa-caaatgacc--t-ta--------------gtcaagttac-- B D Squirrel ggttccg--agagagacccgaggggcgacccgagaaac--c-ta--------------acagagttac-- B D Guinea pig g-----g--aa--------gaggggccagcggataaac--c-gacgccgtgcgcgcagataaaccgacgc B D Rabbit g-----g--ac--------gtgggacaactaggtaacc--g-cc--------------gtaaagttac-- B D Pika g-----g--aa--------gagggacaacccgataactcga-ta--------------gtaaagtgac-- B D Human ---------ga--------gaggggcacccagataaac--g-ta--------------acaaagctac-- B D Chimp ---------ga--------gaggggcacccagataaac--g-ta--------------acaaagctac-- B D Bonobo ---------ga--------gaggggcacccagataaac--g-ta--------------acaaagctac-- B D Gorilla ---------ga--------gaggggcacccagataaac--gtta--------------acaaagctac-- B D Rhesus ---------aa--------gaggggcactcagataaac--g-ta--------------acagagctac-- B D Marmoset ---------aa--------gaggggcacccagataaac--g-ta--------------acaaagctac-- B D Tarsier ---------ga--------gaggggcgacc-gataaac--g-ta--------------atgaggttac-- B D Bushbaby ---------aa--------gaggggcaaccagataaac--g-tt--------------ataaagtaac-- B D Tree shrew ------ggaaa--------gaggggcaaccagataaat-gg-ta--------------ataaagttac-- B D Malayan flying lemur ------gagga--------gaggggcagccagataaac--a-ca--------------ggaaagtcac-- B D Pig -------gagg--------agcgagcaggcggagagac--c-tg--------------gtaaagttgc-- B D Dolphin -------gagg--------agagggcaagcagataaac--t-gc----------------gtagttac-- B D Cow -------gagt--------agagggcagccagagaaac--t-tc--------------agacagttcc-- B D Sheep -------gagt--------agagggccgccagagaaac--t-tc--------------agacagttcc-- B D Horse -------gaga--------ggagggcaagcagataaac--g-ca--------------gtaaagttac-- B D Chinese pangolin -------caga--------agaaggcaaccagataaac--t-ta--------------ataaagttac-- B D Dog -------gaag--------agagggccaccagataaac--c-ta--------------ataaagttac-- B D Hawaiian monk seal -------gaag--------agagggcaaccagataaac--t-ta--------------ata---ttac-- B D Hedgehog -------gaga--------aggggcccaccagataaac--c-ta--------------atgaagttac-- B D Shrew -------gaga--------agggggcgatcagatcaac--c-gg--------------caaaagtgac-- B D Elephant -------ggaa--------gaggggcaaccagacaaac--t-ca--------------ataaagttac-- B D Tenrec -------ggaa--------gagggacagccggatgaac--g-ta--------------atgaagttac-- B D Opossum -------ggaa--------gtggagcaactagataaat--t-ta--------------gtcaaagtag-- B D Zebrafish ====================================================================== B D X. tropicalis ====================================================================== B D Chicken ====================================================================== Mouse ----------ca-tttcccgatt--aaaggtcacatcgtaatttcccaggggaggttag--tgag-aaaa Rat ----------ca-tttcccgatt--aaaggtcacatcgtaatttcccaggggaggttag--tgag-aaaa GCF_003668045 ----------ca-tttcccgatt--aaaggtcacatcataatttcccaagggaggttag--tgag-aaaa Beaver ----------ca-gttcccgatt--aaaggtcacctcgctatctccctggagaggttag--tggg-aaaa Squirrel ----------ca-tttcccgatt--aaaggtcgcatcgtcctctcccgagggaggttag--tgag-aaaa Guinea pig cgtgcgcgcgcc-cgccccgagt--aaaggtcacgtcgtaagctcccgagggagagcac--tgag-aaaa Rabbit ----------ca-tttcccgatgaaaaaggtcacctcgtcatctcccaagggaggttgg--tgag-aaaa Pika ----------cg-tttcccgatt--gaaggtctctccgtcatctcccaagggaggttgg--tgag-aaaa Human ----------cattttctcgact--aaaggtcacattgtaatctcccaa-ggaagttag--tgag-aaaa Chimp ----------cattttctcgact--aaaggtcacattgtaatctcccaa-ggaagttag--tgag-aaaa Bonobo ----------cattttctcgact--aaaggtcacattgtaatctcccaa-ggaagttag--tgag-aaaa Gorilla ----------cattttctcgact--aaaggtcacattgtaatctcccaa-ggaagttag--tgag-aaaa Rhesus ----------cattttctcgact--aaaggtcacattgtaatctcccaa-ggaagttag--tgag-aaaa Marmoset ----------cattttctcgact--aaaggtcacatcgtaatctcccaa-agaagttag--tgag-aaaa Tarsier ----------ca-tttcccgatt--aaaggtcacgtcgtcatctcccaagggaggttag--taag-aaaa Bushbaby ----------ca-tttcccgatt--aaaggtcacgtcgtaatctcccaagggaggttag--tgag-aaaa Tree shrew ----------ca-tttcccgatt--aaaggtcacatcgtaatctcccaagggaggttag--tgag-aaaa Malayan flying lemur ----------cc-tttccagatt--aaaggtcacatcaaaatctctgaagggaggttag--tgag-aaaa Pig ----------cg-cttcccggtg--aaaggtcagggcgcagtctccccagggaggttag--tgag-aaaa Dolphin ----------ca-tttcccgatt--aaaggtcacgtcgtaatctccccagggaggttag--tgag-aaaa Cow ----------cg-cgccccgatt--aaaggtcacgtcgtcatctccccagggaggttag--tgag-aaaa Sheep ----------cg-cgccccgatt--aaaggtcacgtcgtcatctccccagggaggttag--tgag-aaaa Horse ----------ca-ttgccccagc--aaaggtcacgtcggcatctcccaggggaggttag--tgag-aaaa Chinese pangolin ----------ca-ttccccgatg--aaaggtcacgtcgtaatctccccggggaggttag--tgag-aaaa Dog ----------ca-ttccccgatt--aaaggtcacgtcgtaatctcccaagggaggtttg--tgag-aaaa Hawaiian monk seal ----------ca-tttcccgatt--aaaggtcacggtgtaatctcccaaaggaggtttg--tgagaaaaa Hedgehog ----------ca-ct----------gaaggtcatgttgtaatctcctaagggagcttag--tgagaaaaa Shrew ----------ca-ttccccgatg--aaaggtcacttcgtcatctcccaagggaggcgag--cgag-aaaa Elephant ----------ca-tttccccact--aaaggtcacatcgtaatctcccaagggatgttag--tgag-aaaa Tenrec ----------ct-tttcccgatt--aaaggtcacgtcgtaatctcccaagggaggttcg--tgag-aaaa Opossum ----------ca-tttgacgatt--aaaggtcaaatcataatctcccaaaagagatttagttgga-aaaa Zebrafish ====================================================================== X. tropicalis ====================================================================== Chicken ====================================================================== Mouse cctcaaattatacggactggctgt-----ggaccgtttaatt-ccccctcctgcccc-----------cc Rat cctcaaattatacggactggctgt-----ggaccgtttaattcccccctcctgcccccccctccccgtcc GCF_003668045 cctcaaattatacggactggctgt-----ggaccgtttaattttcctttccctccct-------ctggcc Beaver cctccaattatacggactggctgt------aaccgcttaatttttctttccttctat-----------cc Squirrel cctcaaattatacggactggcttt-----ggaccatttaatttttctttccctccgt-----------cc Guinea pig cctcaaattatgcggactggctgc-----ggaccgcttaatt-tcctttcccttctt-----------ca Rabbit cctcaaattatacggactggctgt-----ggaccgtttaatttttcttccactccgt-----------cc Pika cctcaaattacacggactggctgt-----ggaccgtttaatttttctacccctccat-----------cc Human cctcaaattatacggactggctgt-----ggaccgtttaatttttctttccctccgt-----------cc Chimp cctcaaattatacggactggatgt-----ggaccgtttaatttttctttccctccgt-----------cc Bonobo cctcaaattatacggactggctgt-----ggaccgtttaatttttctttccctccgt-----------cc Gorilla cctcaaattatacggactggctgt-----ggaccgtttaatttttctttccctccgt-----------cc Rhesus cctcaaattatacggactggctgc-----ggaccgtttaatttttctttccctctgt-----------cc Marmoset cctcaaattatacggactggctgt-----ggaccgtttaatttttctttccctccgt-----------cc Tarsier cctcaaattatacggactggctgt-----ggaccgtttaatttttctttccctcctt-----------cc Bushbaby cctcaaattatacggcctggctgt-----ggaccgtttaattttt-tccccctccgt-----------cc Tree shrew cctcaaattatacggactggctgt-----ggaccgtttaatttttcttttcctccgt-----------tc Malayan flying lemur cctcaaattatacggactggctgt-----ggaccgtttaatttttcttccccccttc-----------cc Pig cctcaaattatacggaccggctgt-----ggaccatttaatttttctttccctctgt-----------cc Dolphin cctcaaattatacggaccggctgt-----ggaccgtttaatttttctttccctctcg-----------cc Cow cctcaaattatacggactggctgt-----cgaccgtttaatttttctttccctctgt-----------cc Sheep cctcaaattatacggactggctgt-----cgaccgtttaatttttctttccctctgt-----------cc Horse cctcaaattatacggcctggctgt-----ggaccgtttaatttctctttccctctgt-----------cc Chinese pangolin cctcaaattatacggactggcggt-----gcaccg-----tttttcttgctctctgt-----------cc Dog cctcaaattatacggactggctgt-----ggaccgtttaatttttctttccctccgt-----------cc Hawaiian monk seal cctcaaattatacggactggctgt-----ggaccgtttaatttttccttccctctgt-----------tc Hedgehog cctcaaattatacggactggctgc-----ggaccttttaatttt--tttccctc---------------- Shrew cctcaaattacacgcactggctgcggtgtggaccttttaatttttctttccctctat-----------cc Elephant cctcaaattagaccgactggctgt-----ggaccgtttaatttttccttccctctgt-----------cc Tenrec cctcaaattataccgactggctgt-----ggaccgtttaatttttctttccc------------------ Opossum cctcaaattgtactaaatggtgat-----agactgtttaatttttatttcctt---------------ac Zebrafish ====================================================================== X. tropicalis ====================================================================== Chicken ====================================================================== Mouse c-tccttttactctc------tgaaa----------gaaaa Rat c-tccctctactctc------tgaaa----------gaaaa GCF_003668045 c-tccctctactctc------tgaag----------gaaaa Beaver t-tccccctactctc------caaaa----------ggaaa Squirrel c-acccccaactctc------caaaa----------taaaa Guinea pig g-tcctttgactctc------cagaa----------gaaaa Rabbit c-tcccccgattctc------caaaa----------gaaaa Pika c-tcccccggttctc------caaaa----------agaaa Human c-tccctcatgtctc------caaag----------gaaaa Chimp c-tccctcatgtctc------caaag----------gaaaa Bonobo c-tccctcatgtctc------caaag----------gaaaa Gorilla c-tccctcatgtctc------caaag----------gaaaa Rhesus c-tccctcatgtctc------caaag----------gaaaa Marmoset c-tccctcaagtctc------caaag----------gaaaa Tarsier c-tcccccaaccctc------caaaa----------gaaaa Bushbaby c-tcccccaattctc------caaaa----------gaaaa Tree shrew c-tcccccaactctc------caaaa----------gaata Malayan flying lemur t-ccctctgactctc------caaaa----------gaaaa Pig c-tcccccgactctc------taaaa----------gaaaa Dolphin c-tcccccgactctc------cataa----------gaaaa Cow c-tccctcgactctc------caaaa----------gaaaa Sheep c-tccctcgactctc------caaaa----------gaaaa Horse c-tcccccaactctcaaaaaaaaaaa----------aaaaa Chinese pangolin c-tcccccgactctc------cgaaa----------gaaaa Dog c-tcccccgactctg------cagaa----------gaaaa Hawaiian monk seal c-tcccccgactctg------caaaa----------gaaaa Hedgehog ----cccccacttcc------aaaaaaaaaaaagttgaaaa Shrew c-t-ccccgactctc------agaaa----------gaaac Elephant cttccctccactctc------caaga----------gaaaa Tenrec --tcctcctactctc------ccaaa----------gaaaa Opossum c-tcccccatttttc--------aaa----------gaaaa Zebrafish ========================================= X. tropicalis ========================================= Chicken ========================================= Inserts between block 28 and 29 in window B D Opossum 3607bp Alignment block 29 of 393 in window, 56747498 - 56747943, 446 bps B D Mouse tttaaaaca-ctga-----t-----ttttt-----cccttttttcc--------c---cc---tccttga B D Rat tttaaaaca-ctgg-----tgtttcttttt-----ttttttttttc--------t---cc---tccttga GCF_003668045 tttaaaaca-ctcg-----t-----gcttc-----cttttcttttt--------t---cc---ccgttga Beaver tttaaaaca-ctcg-----t-----gtttt-----gttgttttttc--------t---tc---c---tga B D Squirrel tttaaaaca-cttg-----t-----g---------------tcccc--------c---tc---cccctgg B D Guinea pig gtgaaaaca-ctcc-----t-----gtttt-------------------------------------taa B D Rabbit tgtcaaacg-ctcg-----c-----gatct-----gggctttccct--------g---a----------- B D Pika attcaaa-a-cacc-----c-----gttct-----gtgttttacct--------t---ac---------g B D Human tttaaaaca-ctcg-----t-----gtttt------------tatt--------t---tc---cccccga B D Chimp tttaaaaca-ctcg-----t-----gtttt------------tatt--------t---tc---cccccga B D Bonobo tttaaaaca-ctcg-----t-----gtttt------------tatt--------t---tc---cccccga B D Gorilla tttaaaaca-ctcg-----t-----gtttt------------tatt--------tccccc---cccccga B D Rhesus tttaaaaca-ctcg-----t-----gtttt------------t---------------tc---cccccga B D Marmoset tttaaaaca-ccgg-----t-----gtttt------------c-tt--------t---tc---ccccaga B D Tarsier tttaaaaca-ctcg-----t-----gttttg----ctgggggtttt--------t---ct---cccctga B D Bushbaby tttaaaaca-cttg-----t-----gtcct------------cccc--------cc--ac---cccccgc B D Tree shrew cttaaaaca-ctcg-----t-----gattt-----------ttttt--------t---tt---tccctga B D Malayan flying lemur tttaaaaca-ctcg-----t-----gtttt-----attttatttta--------t---tt---ttcctga B D Pig attaaaaca-cccg-----t-----gt----------tcttttttt--------t---cc---cccttga B D Dolphin attaaaaca-cccg-----t-----gtt---------ttttttttt--------c---tt---cctttga B D Cow cttaaaacaccccg-----t-----gttgttgt----ttttttttc--------t---tt---tccttga B D Sheep cttgaaacaccccg-----t-----gttgttgt--tgttgtttttc--------t---tt---tccttga B D Horse attaaaaca-cccg-----t-----gg------------ttttttt--------t---tt---tccctga B D Chinese pangolin tttaaaaca-cccg-----t-----gt------------tttgttttgttttgct---tt---ttcctga B D Dog attaaaaca-ctcg-----t-----g--------------ttttta--------t---tc---cccctga B D Hawaiian monk seal attaaaaca-ctcg-----t-----g-------------ttttttt--------t---tc---cccctga B D Hedgehog agtaaaaca-ttca-----t-----tttcttccacc------tcta--------t---cc---ctcctga B D Shrew agggaaaca-cccgtctttt-----ttttttccccccttccttctt--------c---tt---cccctga B D Elephant a----aaca-ccca-----c-----------------------ttt--------t---cc---cccctga B D Tenrec gt---tacc-ccca-----c-----------------------ccc--------t---tccaactctcca B D Zebrafish ====================================================================== B D X. tropicalis ====================================================================== B D Opossum ====================================================================== B D Chicken ====================================================================== Mouse gaagaattaagcaaccgccacacgaa------------ag-------tgtg-agtccaaa-ttcgtc--- Rat gaagaatgaagcaacagtcacacaaa------------ag-------tgtg-agtccaaatttcgtc--- GCF_003668045 gaagaactaagcagccgccacacaaa------------ac-------cgtg-agtccaaa-tatatc--- Beaver gaaaagctaaacaaccgtgacaataaaag--ccc---gag-------tctg-agtctaag-ttcatccct Squirrel gggaggctaaggaatcaccacaaggaaac--cccaa-gag-------actg-agtctaaa-ttccgc--- Guinea pig aaacctctgagcactcactacaacaaaag--cccg---ag-------gctg-agtctgaa-ttcatg--- Rabbit -----------caaccg---------------ccgggagg-------tttg-attctaaa-ttcatc--- Pika aaaaagctaagcgaccgctccaacagacg--cccaagagg-------gtcg-agtctaaa-ttcatc--- Human gaaaagctaaacaaccaccacaacaaaag--cccca--ga-------ttta-agtctaaa-ttcatc--- Chimp gaaaagctaaacaaccaccacaacaaaag--cccca--ga-------ttta-agtctaaa-ttcatc--- Bonobo gaaaagctaaacaaccaccacaacaaaag--cccca--ga-------ttta-agtctaaa-ttcatc--- Gorilla gaaaagctaaacaatcaccacaacaaaag--cccca--ga-------ttta-agtctaaa-ttcatc--- Rhesus gaaaagctaagcaaccaccacaacaaaag--cccca--ga-------ttta-agtctaaa-ttcatc--- Marmoset gaaaagctaagcaaccaccacaacaaaag--ctcca--ga-------ttta-agtctaaa-ttcatc--- Tarsier gaaaagccaagcaaccaccgccacaaaag--cccaa--gagt-----gttg-agtctaaa-tgcatc--- Bushbaby aaaaatctaagcaaaccccaccacaaaag--ctggc--gt-------ttgg-ggtctaag-ttcatc--- Tree shrew gaaaagctaagca---accacaacaaacg--ctcaa--gagt-----tttg-ggtctaaa-ttcatc--- Malayan flying lemur gagaagctaagcaaccaccacaacaaaag--tccaa--gagt-----tttgagatttaaa-ttcacc--- Pig gaataactaagcaaccacaacaacaaaag--cccaa--gaat-----tttg-agtctaaa-ttcatc--- Dolphin gaaaaactaagcaaccacaacaacagaag--cccag--gagt-----tttg-agtttata-ttcatc--- Cow gaaaagctaaacaaccataacaacaaaag--ccccc--gagt-----tttg-agtctaaa-ttcatc--- Sheep gaaaagctaaacaaccgtaacaacaaaag--cccca--gagt-----tttg-agtctaaa-ttcatc--- Horse gaaaaactactcaaccacaccaacaaaaa--tccaa--gagt-----tttg-agtctaaa-ttcatc--- Chinese pangolin gaaaaaataagcaattacagcaataaaaaagcccac--gagt-----tttg-agtctaaa-ttcttc--- Dog ggaaaactaagcaaccaccaccacaaaag--cccta--gagt-----tttg-agtctaaa-ttcatc--- Hawaiian monk seal gaaaaactaagcaaccaccaccacaaaag--cccta--gagt-----ttta-agtctaaa-ttcatc--- Hedgehog aaaac--taagcagccacaacagcacaag--cctac--gagtt----tttg-aatctaaa-ttcatc--- Shrew gtaacaatgagcaagcacaatagcaaaag--cccag--gggtttaagtctg-aat-taaa-gtcacc--- Elephant gaaaagctacgctaccaccaccacaaaag--cccaa--gaat-----tttg-ggtctaaa-ttcatc--- Tenrec gaaaagct--------gctaccacaaaag--cccaa--gaat-----tttg-tgtctaaa-tttatc--- Zebrafish ====================================================================== X. tropicalis ====================================================================== Opossum ====================================================================== Chicken ====================================================================== Mouse a-gtac----gttagaatgaagacgagtttaaaa--ct--c-aaat------------------------ Rat a-gtat----gctagaatgaa---gagttcaaaa--ct--c-aaat------------------------ GCF_003668045 a-gtat----gctagaatgaa---gatttcaaaa--ct--c-aaat------------------------ Beaver a-ctat----gctagagtcaa---gacttcaaacctct--c-aaaa------------------------ Squirrel a-ctaa----gatag--tcaa---gagttggaaactct--c-aaaa------------------------ Guinea pig a-ctattctcactggagtcaa---gaattcaaaa--ct--c-gtaa------------------------ Rabbit a-ccac----gctggagtcaa---gagttcaaaactct--c-aaaa------------------------ Pika a-ccac----gctggagtcaa---gagttcaaaactct--c-agaa------------------------ Human a-ccgt----cctggagtcaa---gagttcaaaactct--caaaaa------------------------ Chimp a-ccgt----cctggagtcaa---gagttcaaaactct--caaaaa------------------------ Bonobo a-ccgt----cctggagtcaa---gagttcaaaactct--caaaaa------------------------ Gorilla a-ccgt----cctggagtcaa---gagttcaaaactct--c-aaaa------------------------ Rhesus a-ccgt----cctggagtcaa---gagttcaaaactct--c-aaaa------------------------ Marmoset a-ccgc----cgtggagtcaa---gagttcaaaactct--c-aaaa------------------------ Tarsier a-ccat----gttggaatcaa---gagttcaaaactct--c-aaaa------------------------ Bushbaby a-ccat----gctggagttga---gagttcaaaacttt--c-taaa------------------------ Tree shrew a-gcac----attggagtcaa---gagttcaaaactcc-ac-aaaa------------------------ Malayan flying lemur a-ctac----gctggagtcaa---gagttcaaaactct--c-aacc------------------------ Pig a-ccag----gctggagtttg---gagttctaaattct--c-aaaaaccct--cac-------------- Dolphin a-ccac----ggtggagtcag---gagttcaaagctct--c-aaaaaagca--aacaacaacaaa----- Cow a-ccac----ggtggagtcag---gagttcaaagctct--c-aaaaaacca--aac-------------- Sheep a-ccac----ggtggagtcag---gagttcaaagctcg--c-aaaaaacca--aac-------------- Horse a-ccgc----gctcgagtcag---gagctccaagctct--c-agaagcc--------------------c Chinese pangolin a-tcac----gctggagtcag---gagtccaaagctct--c-aaaaaccaa--aaca-aaatgcaaaaac Dog a-tcat----gatggagtcag---gggttcaaacctct--g-aaacacaca--cacacacacacacacac Hawaiian monk seal a-ccag----gatggagtctg---gagctcaaagctct--g-aaaagcaag--caaacaaacaca----- Hedgehog a-tgaa----actggagccag---gagttcaaaatttt--c-aataagcaa--atc-------------- Shrew actcgg----gatggagtcag---gagtataaagttct--t-agaaaacaaacaca-------------- Elephant a-tcac----cccggagtcag---gagttgcaaacttaaac-aaaaacaaacaaacaaacg--------- Tenrec a-ccac----ctcaag-------------ccaaactta----aaaaaaagaagaagaaagg--------- Zebrafish ====================================================================== X. tropicalis ====================================================================== Opossum ====================================================================== Chicken ====================================================================== Mouse -------ggca------------------aaacttcaaggcactgtacgg--tattcccg---------- Rat -------ggca------------------aaacttcaaggcagtgtgcct--tattcccg---------- GCF_003668045 -------gcgg------------------a---cttaaggcagtgtaagg--catttacg---------- Beaver -------accg------------------g-cctttaaggcagcataagg--ttttccta------ctt- Squirrel -------accg------------------gactttgaaggcagactgaga--tgtccttgagcagacct- Guinea pig -------tggg------------------a--ctttaaggcagagtgagg--ttttcctgagcagactt- Rabbit -------accg------------------gaccttcggg-cagcgggagg--tttcccggagcagccct- Pika -------accg------------------gactttcgggccagcgggagg--tttcccggagcaaacct- Human -------accg------------------gacc-ttaaggcaatgtaagg--tttcccc-agcagaccc- Chimp -------accg------------------gacc-ttaaggcaatgtaagg--tttcccc-agcagaccc- Bonobo -------accg------------------gacc-ttaaggcaatgtaagg--tttcccc-agcagaccc- Gorilla -------accg------------------gacc-ttaaggcaatgtaagg--tttcccc-agcagaccc- Rhesus -------accg------------------aacc-ttaaggcaatgtaagg--tttcccc-agcagacct- Marmoset -------acct------------------gatc-ttaaggcagtgtaaga--tttcccc-agcagacct- Tarsier -------accg------------------gaac-ttaaggcagcgtgagg--tttccctgagcagacct- Bushbaby -------acgg------------------gacctttaagagaatgcgagg--ttttcttgagtagacat- Tree shrew -------actg------------------aacc-ttaaaccagcgtaagggttttcctg-agcggacct- Malayan flying lemur -------accg------------------gacc-ttaagactatgtaagg--tttcccg-ggcagacct- Pig -------aacaagtaaccca---------gacc-ttagagcagg--------tttctctgagc------- Dolphin -------aaca---aacctg---------gacc-ttaaagcagcgtaagg--tttatttgagcagacct- Cow -------aaca---aagccg---------gacc-t-------------------tctttgaacagaccta Sheep -------aaca---aagccg---------gacc-t-----------------tctctctgaacagacct- Horse ctccccaccca---aagccgca-------gacc-ttaaagcagcgaaagc--tttctttgagcagacct- Chinese pangolin aaaacaaaaca---aaactg---------gacc-ttaaacgaatggaag---tttcttagagtatacct- Dog acacacacaca---cacacacacggacctgacc-tgaaggcagcctaagg--tttctaagagcggatct- Hawaiian monk seal -----------------------------gatc-ttaaggcagcctaagg--tttcttagagcagatct- Hedgehog -------agca---aagcaaag-------gatg-ttaaggca-------------gttggaccagatct- Shrew -------aaca---aacaaaag-------ggcg-gcaaagcaccccaggt--ttcattgg-tcagacct- Elephant -------aaag------------------gatg-tt-aagcctcctaagg--tttcctttggcagaact- Tenrec -------aaaa------------------gatg-ctaaaggcatttacag--tgtccttgagcagaact- Zebrafish ====================================================================== X. tropicalis ====================================================================== Opossum ====================================================================== Chicken ====================================================================== Mouse ------------------------------------------------------a--------------- Rat ------------------------------------------------------a--------------- GCF_003668045 ------------------------------------------------------g--------------- Beaver g------gg--------------------------------------------ta--------------- Squirrel c------tg--------------------------------------------ta--------------- Guinea pig a------gg--------------------------------------------ca--------------- Rabbit g------gg--------------------------------------------ct--------------- Pika g------gc--------------------------------------------tt--------------- Human c------ag--------------------------------------------ta--------------- Chimp c------ag--------------------------------------------ta--------------- Bonobo c------ag--------------------------------------------ta--------------- Gorilla c------ag--------------------------------------------ta--------------- Rhesus c------ag--------------------------------------------ta--------------- Marmoset c------ag--------------------------------------------ta--------------- Tarsier g------gg--------------------------------------------taggtttgcagtttttt Bushbaby g------gg--------------------------------------------ta--------------- Tree shrew g------gg--------------------------------------------aa--------------- Malayan flying lemur g------gg--------------------------------------------ta--------------- Pig agacctgcg--------------------------------------------ta--------------- Dolphin g------tg--------------------------------------------ta--------------- Cow a------tg--------------------------------------------ta--------------- Sheep a------tg--------------------------------------------ta--------------- Horse g------ag--------------------------------------------ta--------------- Chinese pangolin g------gg--------------------------------------------tg--------------- Dog g------cg--------------------------------------------ta--------------- Hawaiian monk seal g------gg--------------------------------------------ta--------------- Hedgehog g-----agg--------------------------------------------ta--------------- Shrew g------gg--------------------------------------------ta--------------- Elephant g------gg--------------------------------------------ta--------------- Tenrec g------gggcaaacccttcaaaactccctgcccttcagccggttccccctcaga--------------- Zebrafish ====================================================================== X. tropicalis ====================================================================== Opossum ====================================================================== Chicken ====================================================================== Mouse ------------------------------------agt---------------------agacgccacc Rat ------------------------------------agt---------------------ag-----acc GCF_003668045 ------------------------------------agt---------------------agactccacc Beaver ------------------------------------agtttg-----------taactccaaactccaat Squirrel ------------------------------------ggtttgc--aaatttcttaatcctcaactccaac Guinea pig ------------------------------------cctctgc--aaatttcttcatcccaaactccagt Rabbit ------------------------------------ggtttgc--aaattgcttcatcccagaggccagt Pika ------------------------------------ga-----------------acctcccgctccaac Human ------------------------------------ggtttgc--aaatctcttaatcccaaactc-aat Chimp ------------------------------------ggtttgc--aaatctcttaatcccaaactc-aat Bonobo ------------------------------------ggtttgc--aaatctcttaatcccaaactc-aat Gorilla ------------------------------------ggtttgc--aaatctcttaatcccaaactc-aat Rhesus ------------------------------------ggtttgc--aaatttcttaatcccaaactc-aat Marmoset ------------------------------------ggtttgc--aaatttcttaatccaaaattctaat Tarsier tttaaaaatggttaaacctatttaattatccattttggtttgc--aaatttcttaatctcaaactccaat Bushbaby ------------------------------------ggtttgc--aaatttctgagtcac-------aat Tree shrew ------------------------------------ggtctgc--aaatgtcttagtcccagacttcaat Malayan flying lemur ------------------------------------ggtttgc--aagttgcttaaacccaaactctaat Pig ------------------------------------ggtttgc--aaaattattcataccaaactccaga Dolphin ------------------------------------ggtttgc--aaatttattcataccaaactccaat Cow ------------------------------------ggtttgc--aaatttattcatgccaaactcctat Sheep ------------------------------------ggtttgc--aaatttattcatgccaaactcctat Horse ------------------------------------ggtttgc--gaatttcctaataccaaactccaat Chinese pangolin ------------------------------------agtttgc--tgattgtttcttacgaaactccaat Dog ------------------------------------gatttgc--aaatttcttaatcccaaactccaat Hawaiian monk seal ------------------------------------gatttgc--aaatttcttaataccaaattctaat Hedgehog ------------------------------------gggttacaaatatttcttaatagtaaacgccaat Shrew ------------------------------------gctttgc--ccatttctt-------aacactaat Elephant ------------------------------------gatttgc--aaggttcttaatcctaaaccccaat Tenrec ------------------------------------ggtctgc--aaatgccttcatcctaaatcccagc Zebrafish ====================================================================== X. tropicalis ====================================================================== Opossum ====================================================================== Chicken ====================================================================== Mouse tccaaagcttcaa-agtact------------tagt-----------------cttattttaaagcctta Rat tccaaagcctcaa-cgtact------------tagt-----------------cttattttagagcctta GCF_003668045 ttggaagcttcaa-agtact------------tagt-----------------gttatcttaaagcctca Beaver tccaaagccttaa-aacacg------------tagtttttt-tttcttttttcttttttttgaagtctta Squirrel ttcaaagcctcaa-aatact------------tagtttttg-tttg-------attattttgaaggctta Guinea pig accaaagcctcaa-aatatg------------tatttttcg-tttg-------attatcttaaagtctta Rabbit cccacagcctcaa-aacact--------------gtttcgg-tttggtttt--attatttcgaagtctta Pika gccacagcttcag-agcgct--------------gtttggg-tt--------------------gtatta Human tccaaagcctcaa-gctatt------------cagttttcc-tttt-------attattttgaagactta Chimp tccaaagcctcaa-gctatt------------cagttttcc-tttt-------attattttgaagactta Bonobo tccaaagcctcaa-gctatt------------cagttttcc-tttt-------attattttgaagactta Gorilla tccaaagcctcaa-gctatt------------cagttttcg-tttt-------attattttgaagactta Rhesus tccaaagcctcaa-gctatt------------cagttttcg-tttt-------attattttgaagactta Marmoset tccaaagcctcaa-gctatt------------cagttttcg-tttt-------attattttgaagtctta Tarsier accagagcttcaa-actaca------------cagtttatg-tttt-------attattttgaagtcttg Bushbaby tccaaagcctcaa-actact------------caattttca-ttgc-------attattttgaagtctta Tree shrew gccaaagtctcagaaatact------------aagttttcg-tttt-------cttattttgaagccttt Malayan flying lemur tctgaagccttcg-aatact------------cagttttcg-tttt-------attattttgaagtcttt Pig tcta-agcctcaa-aagacc------------cggttttcg-tt----------ttattttgaaatctta Dolphin tccaaagcctcaa-aatacc------------cagttttca-tttt-------attattttgaaatctta Cow tccagagcctcaa-agtact------------cagttttcg-tttt-------attattttgaaatctta Sheep tccagagtctcaa-aatacc------------cagttttcg-tttt-------attattttgaaatctta Horse tctaaagcctcaa-aatacc------------cagttttcg-tttt-------attattttgaagtctta Chinese pangolin tccaaagcctcaa-aatatc------------cagtttccg-tttt-------attattttgaattatta Dog tccaaagcctcaa-aatacc--------------gtttgca-tttt-------attattttgaagccgta Hawaiian monk seal tccaaagcctcaa-aatacc------------caattttcgttttt-------attattgtgaagtcata Hedgehog tccaaagctttaa-aaaatctttttttttttttttttttttttttt-------accattttgaagtgttt Shrew tcccaagcctcca-aacacc------------cactttcccctttg-------atcatgttgaagtcttt Elephant gccaaagtctgaa-aatact------------cagctttta-tttt-------attactttgaagcctta Tenrec tccagaggtgcaa-gttgcc------------caatttctg-ttgt-------agtctttcgaaccctta Zebrafish ====================================================================== X. tropicalis ====================================================================== Opossum ====================================================================== Chicken ====================================================================== Mouse aaacttttt-t-tta---tgtcttctca-------aaaatcagtt----------------------tta Rat aa----ttt-t-ttaaagtgtcttctca-------aaaatcagtt------------------at-aata GCF_003668045 aaa---ctt-t-tta---tttcttgtc--------aaaatcagtt------------------ac-aata Beaver aaa---ctt-t-taa---tgttttgtc---------aaatcagct-----------------ttt-aaaa Squirrel caa---agt-t-taa---tgctttcttacaggtt-aaaatcagctgttaaacttattattaataa-atta Guinea pig aaa---ctt-t-caa---catttccttg-------gaagtcagct----------------tcta-aaaa Rabbit aaa---ctc-c-tac---tgttttcctatctgtc-caagtcggct-----------------tttcaaaa Pika aca---ctc-cgcgg---ggttttctcatctgtc-cacatcaact-----------------tgt-aaaa Human aaa---ttt-t-taa---tgcttttttgtctgtc-aaaatcagct-----------------ttt-aaaa Chimp aaa---ttt-t-taa---tgtttttttgtctgtc-aaaatcagct-----------------ttt-aaaa Bonobo aaa---ttt-t-taa---tgtttttttgtctgtc-aaaatcagct-----------------ttt-aaaa Gorilla aaa---ttt-t-taa---tgttttcttgtctgtc-aagatcagct-----------------ttt-aaaa Rhesus aaa---ttt-t-taa---tgttttcttatctgtc-aaaatcagct-----------------ttt-aaca Marmoset aaa---ttt-t-taa---agttttcttatctgtc-aaaattagcc-----------------tttaaaaa Tarsier aaa---cgt-t-tga---tgtttacttgtctgtc-aaaatcagct-----------------ttt-gaaa Bushbaby aac---ttt-t-aga---tgttttcttatctgtc-aaaacgaact-----------------ttt-aaaa Tree shrew aaa---acgtt-taa---tgttttctt---tgtc-aaaatcagat-----------------ttt-aaaa Malayan flying lemur aaa---ctg-t-taa---tgttttcttatctgtc-aaaatcagct-----------------ttt-aaga Pig aaa---cat-t-taa---tgttttcttatctgta-aaaatcagct-----------------ttt-taag Dolphin aaa---ctt-t-taa---tgttttcttatctgtt-aaaataaact-----------------ttt-taag Cow aaa---ctt-t-gaa---tgttttcatatctgta-aaaatcagtt-----------------ttt-tccg Sheep aaa---ctt-t-caa---tgttttcatat--------aatcagtt-----------------ttt-tcca Horse aaa---ctt-t-taa---tgttttcttatctgtt-aaaatcagct-----------------ctt-tagt Chinese pangolin aac---ctt-c-taa---agtt---ttatcggtt-caaatcagct-----------------ttt-tagg Dog aaa---ctc-c-ta----tgttttcttatctgtc-aaaattagcg-----------------ttt-taca Hawaiian monk seal gaa---ctc-t-tag---tgttttcttatctgtc-aaaatcagcg-----------------ttt-t--- Hedgehog a------------ag---tattttcttacctgtc-aaattcaact-----------------ttt-taag Shrew --------------g---cgttttcttccgtgtcaaaagtcaaca-----------------ttt-gaag Elephant aaa---ctt-t-tag---tgccttcttatctgtcaaaaaccagct-----------------ttt-taaa Tenrec caa---cat-t-gca---tgctttcttaactgcccacacccagct-----------------ttt-caaa Zebrafish ====================================================================== X. tropicalis ====================================================================== Opossum ====================================================================== Chicken ====================================================================== Mouse tttatt-gg-aattta-ttattcttatcta-------------------------------------t-- Rat tttgtt-gg-aattta-ttatttttatcta-------------------------------------t-- GCF_003668045 tttatt-gg-aactta-ttatccttatcca-------------------------------------t-- Beaver ttaaga-tg-aactta-ttattattattcg-------------------------------------t-- Squirrel ttaata-at-aatgta-ttattcttattca-------------------------------------t-- Guinea pig ttaagt-ga-aacttg-ttattttcattca-------------------------------------c-- Rabbit ttagat-ag-aacttg-ctcctctcactca-------------------------------------tct Pika ttaggtcag-aacgtg-ctattcttactct-------------------------------------ccc Human ttaagt-gg-aatttg-ttcctcttattca-------------------------------------ct- Chimp ttaagt-gg-aatttg-ttcctcttattca-------------------------------------ct- Bonobo ttaagt-gg-aatttg-ttcctcttattca-------------------------------------ct- Gorilla ttaagt-gg-aatttg-ttcctcttattca-------------------------------------ct- Rhesus ttaagt-gg-aacttg-ttcctctcattca-------------------------------------ct- Marmoset ttaagt-gg-aacgtg-tccctcttattca-------------------------------------ca- Tarsier ttaatt-ga-aacatg-ttactcttattca-------------------------------------gt- Bushbaby ttaagt-gg-aattcg-ttcctcttattca-------------------------------------gt- Tree shrew ttaaat-gg-aagtgg-tcactcctatgca-------------------------------------ct- Malayan flying lemur ttaagt-gg-aacatg-ttactctaatcca-------------------------------------ct- Pig tgaaat-gg-aactcg-taactttgggtca-------------------------------------ct- Dolphin cacaat-ag-aacttg-caacgtttattca-------------------------------------at- Cow ctcagt-ga-aacttg-taacttttattca-------------------------------------ct- Sheep ctcaat-gg-aacttg-tagctcttattca-------------------------------------ct- Horse ggaa-t-gg-aacttg-ttacttttattcg-------------------------------------ct- Chinese pangolin tgaa-----------a-ttacttttattta-------------------------------------ct- Dog tgaaat-gt-aacttg-ttacttttattca-------------------------------------ct- Hawaiian monk seal -----------acttg-ttacttttgttca-------------------------------------ct- Hedgehog tggaag-ggaaatttgatagtttttattaa-------------------------------------tg- Shrew taaaat-ag-aacttattaagtcttactaactttggtggtggtggtgtgagtgtgtgtgtgtatgtgtg- Elephant ttaaat-ga-aatttg-ctacttctattca-------------------------------------ct- Tenrec ctaaat-ga-aatttg-ctacttctgttcc-------------------------------------ct- Zebrafish ====================================================================== X. tropicalis ====================================================================== Opossum ====================================================================== Chicken ====================================================================== Mouse ----t-g-------ag---------------gggtta--tcc-t-aatcatc-a-ctgtcgttaacaaat Rat ----t-g-------gg---------------cggata--tcc-t-aaccat-----tttcgctaataaat GCF_003668045 ----t-g-------gg----------------ggaca--tcc-c-aaccatc-a-ttttctctaacaaat Beaver ----t-g-------gg---------------ggaaaa--act-t-agttgtt-a-ttttctctcacaaac Squirrel ----g-g-------gggacagcccggtgtgtgtgtga--tcc-t-agtcact-a-ttttctctaacaaag Guinea pig ----t-g-------gg---------------gggaaa--tcc-t----cacg-c-atttctctaa-ggag Rabbit t---g-g-------ga---------------tggaac--tcc-t-agtcgat-a-ttctgcgtcccagtt Pika tcagg-g-------aa---------------gaaaac--tcc-g-ggtggttcg-ttttgtgtgacaatt Human ----t-g-------aa---------------aaaaca--tct-t-agtcatt-a-ttttctgtaacaaat Chimp ----t-g-------aa---------------aaaaca--tct-t-agtcatt-a-ttttctgtaacaaat Bonobo ----t-g-------aa---------------aaaaca--tct-t-agtcatt-a-ttttctgtaacaaat Gorilla ----t-g-------aa---------------aaaaca--tct-t-agtcatt-a-ttttctgtaacaaat Rhesus ----t-g-------ca---------------aaaaaa--tcc-t-ggtcatt-a-ttttctgtaacaaat Marmoset ----t-g-------gc---------------aaaaaa--tcc-t-agtcgtt-g-ttttctgtaacaaat Tarsier ----tgg-------aa---------------aaaaaa--tcc-t-agtcatc-a-ttttttctaacaaat Bushbaby ----t-g-------ag---------------aaaaaac-tct-t-attcatt-a-ttttctctaacaaat Tree shrew ----t-g-------ga---------------aaaaagagtct-t-agtcctt-a-ttttccctaataagt Malayan flying lemur ----t-g-------ga---------------aaacc---cctgt-agccgtt-a-ttttctctaacaaat Pig ----t-g-------gg-------------aaaaaaaa--gcc-tcagtcgtt-a-ttttctctaacaaac Dolphin ----t-g-------gg-------------aaaaaaaa--tcc-t-agtcttt-a-ttttccctaacaaac Cow ----t-g-------ga-------------aaaaaaaa--tcc-t-agtcttt-a-ttttctctaacaaac Sheep ----c-g-------gg-------------agaaaaaa--tcc-t-agtcttt-a-ttttctctaacagac Horse ----t-g-------gg---------------aaaaaa--tcc-t-agtcgtt-a-ttttctctgacaaac Chinese pangolin ----t-g-------gg---------------gaaaaa--tcc-t-aatcgtt-a-ttttctctaacgaac Dog ----t-g-------gg-------------aaaaaaaa--tcc-t-catcctt-a-ttttctctaacaaac Hawaiian monk seal ----t-g-------gg---------------aaaaaa--tcc-t-aatcctt-g-ttttcttgaacaaac Hedgehog ----t-g-------gg---------------gggaaa--tcc-t-agttgtt-atttttccctaacaaac Shrew ----t-g-------tg---------------tggggt--gcc-t-agtctgt-a-ttttctctaacaaat Elephant ----t-gtaaaaaaaa---------------aaaaaa--atc-a-ag-ggtg-atttttctctaacaaag Tenrec ----t-gt------ga---------------aaaata--tcc-a-agtggtg-a-ttttctcaaacaaat Zebrafish ====================================================================== X. tropicalis ====================================================================== Opossum ====================================================================== Chicken ====================================================================== Mouse tacattttg--------atttcctcttctctctcaaggtttgt-----------cagaat-tc------- Rat cgcattttg--------atttcctcgtctctctcaaggtttgt-----------cagaat-tc------- GCF_003668045 tacatttct--------atttcctagtccctctcaagtattgt-----------caggat-gc------- Beaver tctatttcc--------acttccgtttccgtccttagttttgttcaa------gtagaat-taaaatgag Squirrel cccatttcc--------acttcctcttccctccctgatttcgttcaatcagagtcagaat-gc------- Guinea pig cccgtttcc--------acgtcctcttccctctcagtttttgttaaag------cagggt-ga------- Rabbit cttgg---c--------gcttcc-ctgcccaccctcgtttgtt-----------tgaagcttc------- Pika ttcaagtcc--------acttcc-ctgcccgcccttggttggt-----------gggagc-ac------- Human cccatttcc--------acttcctcttccctctcttattttgttgaaatagaatcagaat-ac------- Chimp cccatttcc--------acttcctcttccctctcttattttgttgaaatagaatcagaat-ac------- Bonobo cccatttcc--------acttcctcttccctctcttattttgttgaaatagaatcagaat-ac------- Gorilla tccatttcc--------acttcctcttccctctcttattttgttgaaatagaatcagaat-ac------- Rhesus cccatttcc--------acttcctcttccctctcttattttgttgaaatagaatcagaat-ac------- Marmoset cccatttcc--------acgtcctcttccttctctta-ttcgttgaagctgaatcagaat-ac------- Tarsier cctgtttcc--------atgtcctcttgtctcttgtattttgttgaagtagagttagaat-ac------- Bushbaby cccatttcc--------ccttccctttacctctctgattttgttgaagcagggtcagaat-at------- Tree shrew cccatttcg--------actt---cttccctctctgatttggtcgaagcaggaccggaat-ac------- Malayan flying lemur tccatttcc--------acttccacttccctctcttattttgttgaagcagagtcagaat-ac------- Pig cccatttcc--------acttcattttccttcccttattttgttaaaacagaatccga-t-ac------- Dolphin cccattttc--------agttcctcttccctcccttattttgttaaaacagaatccca-t-at------- Cow accatttcc--------acgttctcttccctcctttattttgttaaaacagaatcccg-t-at------- Sheep accatttcc--------actttctcttcgctcctttattttgttaaaacagaatgccg-t-ag------- Horse tccatttcc--------acgtcctcttccctcccttattttgttaaaat--agtcaga-t-ac------- Chinese pangolin actatttcc--------acttactcttctttccattattttgttgaaacagagtcaga-t-ac------- Dog cccatttcc--------acttccttttctctccctgattttgctaaaacagaattaga-t-ac------- Hawaiian monk seal accatttcc--------atttccttttctctcccttattttgctaaaacagagtcaga-t-ac------- Hedgehog cccattttcaccaacaaactccct-----tccctttattttgtt--------ttttaa-a-aa------- Shrew ctcatttct--------actttct-----ctcccttactctgttgaga---gtccaga-t-aa------- Elephant gctatttcc--------actccgtcttctctccctcattttattaaaacagaatcacaat-ac------- Tenrec accttctcc--------actc--tcttccctcctgc--ttcgttaagacagcatcacaa----------- Zebrafish ====================================================================== X. tropicalis ====================================================================== Opossum ====================================================================== Chicken ====================================================================== Mouse -a-----------------ttagtagcta---atttc-cttgcaaa--t-----gtcacc-aaaaaac-- Rat -a-----------------ttagtagcta---atttc-ctggcaaa--t-----attacc--aaaaac-- GCF_003668045 -a-----------------ttagtagctagctattcc-ctggcaaa--t-----aacacc--aaaaac-- Beaver ga-----------------ttagtacgt----atcct-gtggcgaa--t-----atcaca--gaaaat-- Squirrel -a------------------tatcagct----atccc-atgataaa--c-----accacacagaaaat-- Guinea pig ga-----------------atagcagcg----atccc-atggcaag--t-----atcata--gcaaat-- Rabbit -a-------gactgtgtacatagtcgct----tcccc-gtggccaa--g-----accgca--ggcaac-- Pika -a-------ga--------gaagtagct----ttccc-ggagccaa--t-----agcaca--gaactc-- Human -a-------ta--------ttagtggct----ctcca-atggcaaa--t-----aacaca--gaaaat-- Chimp -a-------ta--------ttagtggct----ctcca-atggcaaa--t-----a--aca--gaaaat-- Bonobo -a-------ta--------ttagtggct----ctcca-atggcaaa--t-----a--aca--gaaaat-- Gorilla -a-------ta--------ttagtggct----ctcca-atggcaaa--t-----aacaca--gaaaat-- Rhesus -a-------ca--------ttggtggct----ctcca-ataacaaa--t-----aacaca--gaaaat-- Marmoset -a-------tg--------tcagtggct----ctcca-atagcaaa--t-----agcaca--gaaaat-- Tarsier -a-------ta--------tcagtaact----ctctt-gtagcaga--------aataca--gaaaaa-- Bushbaby -g-------ta--------tccgtctct----tgcttcatggcata--g-----accaca--gaaaat-- Tree shrew -g-------ta--------ttagtagct----ctccc-a-ggcaac--t-----attacc--gagaatac Malayan flying lemur -a-------ta--------ttagtagct----gtccc-atggcaca--t-----accaca--aaaaa--- Pig -a-------ta--------ttagtagct----ctcct-atgacaaa--c-----atcaca--gaaaat-- Dolphin -a-------ta--------ttagtagct----ctccc-atgacaaa--t-----atcaca--gaaaat-- Cow -a-------ta--------ttagtagct----ctccc-atgacaaa--t-----atcaca--gaaaat-- Sheep -a-------ta--------ttagtagct----ctccc-atgacaaa--t-----atcaca--gaaaat-- Horse -g-------ta--------ttagtagct----ctccc-atgacaaa--c-----atccca--gaaaac-- Chinese pangolin -a-------ca--------ttagtaaca----gtctc-aaga-aaa--t-----gtcaca--gaaaat-- Dog -c-------ta--------taagtagct----ctccc-gtgacaaattt-----ctccca--agaaat-- Hawaiian monk seal -a-------ta--------ttagtagct----ctccc-atgacaaa--t-----atccca--gaaaat-- Hedgehog -gttttttttt--------tttgtagct----cttgc-ataacaaa--a-----atttca--gaa----- Shrew -g-------gt--------ttaatagct----ctccc-aggaaaaa--a-----gtcaca--gagagt-- Elephant -a-------tt--------ttagtagcc----cttcc-atggcaaa--tttgccatcaca--gaaacc-- Tenrec -----------------------tagct----cttgg-gtagcaag--tttgccttctca--gaaaca-- Zebrafish ====================================================================== X. tropicalis ====================================================================== Opossum ====================================================================== Chicken ====================================================================== Mouse ------agcaaggagagagtga---gccgcttttctaagtc-tggtt------------------ccact Rat ------agcaaggagagagcaa---gccgcttttctaagtc-tggtt------------------ccact GCF_003668045 ------agcaaggaaagag--a---gccgc-tttcttagtc-tggtt------------------ccact Beaver ---------------------a---gtcatttttctta--c-tgttt------------------ctgct Squirrel ------agcaagaggag----a---atcctcttccttagtc-tcttt------------------ctgtt Guinea pig ------agcacataga-----a---gttcctttccttagtc-tgttt------------------ctatt Rabbit ------agcagccagggc---a---gccccttccctcgctc-tgttt------------------ccact Pika ------ggctgccaaggc---a---gccacc-------ccc-tgttt------------------ctgcc Human ------agcaaggaaagag--a---gcccttttccttagtc-tgttt------------------ctact Chimp ------agcaaggaaagag--a---gcccttttccttagtc-tgttt------------------ctact Bonobo ------agcaaggaaagag--a---gcccttttccttagtc-tgttt------------------ctact Gorilla ------agcaaggaaagag--a---gcccttttccttagtc-tgttt------------------ctact Rhesus ---agcagcaaagaaagag--a---gcccttttccttagtc-tgttt------------------ctact Marmoset ---ggcagcaaggaaagag--a---gccctttttcttagtc-tgctt------------------ctact Tarsier --------------aagag--a---gtcattttcattagtg-tgttt------------------ccact Bushbaby ---agcagtaaggaaagag--a---gttcttttccttagtc-gtctt------------------ctact Tree shrew tgaagcagcaaggaaagag--c---gttcctttccctggtc-tatct------------------ctact Malayan flying lemur -atagcaacaggaaaagag--a---atccttttccttagtc-tgttt------------------ctact Pig ---agcaacaagg----aa--a---atccctctccggaatc-ccttt------------------ctaca Dolphin ---agcagcaaggaaggag--g---gtccctttcctgaatc-tcctt------------------ctacc Cow ---agcagcaaggaaggag--g---gtccctttcctgaatc-tctat------------------tt--- Sheep ---agca----------ag--g---aatcctttcctga-----ctat------------------tt--- Horse ---agcagcaa----ggag--a---gtccctttcctgagtc-tgttt------------------ct--- Chinese pangolin ---agcaagga-----aag--a---ggccctttcctgaatt-ggtat------------------ctata Dog ---agcagcaaag--aaaa--agaggtccctttcctgagtt-tgttt------------------ctact Hawaiian monk seal ---agcagcgaag--aaag--a---gtccctttcccgagta-tgttt------------------ctact Hedgehog ---aacagcatggagagtt--t---ctttctttcctgggtc-tgttt------------------ctact Shrew ---aactgcaaggaaagag--a---gccccctttctgagtc-ctactgaaactaatacaagtgagatact Elephant --taacatcaagc--aaag--a---gtccctttcctgagtc-ttttt------------------ctagt Tenrec --tggcagccagc----ag--a---gcccctttctttagtcgtttgc------------------ctagg Zebrafish ====================================================================== X. tropicalis ====================================================================== Opossum ====================================================================== Chicken ====================================================================== Mouse gtaaagaataccc Rat gtaaagaataccc GCF_003668045 gtaaagaatgccc Beaver gtaaaaaatgcca Squirrel gcaaagaatgcca Guinea pig gcataaactgcca Rabbit gtcaagaacgctg Pika gtccagagcgc-- Human gtgaagaatgtca Chimp gtgaagaatgtca Bonobo gtgaagaatgtca Gorilla gtgaagaatgtca Rhesus gtaaagaatgtca Marmoset gtaaagaatgcca Tarsier gtaaagaatacca Bushbaby ggagagaaagcca Tree shrew gcaaagaatgcca Malayan flying lemur gtaaagaatttca Pig gtaaagaatgcca Dolphin gtaaagaatgcca Cow gcaaagcacgcga Sheep gtaaagcatgcga Horse ----agaatgtca Chinese pangolin gtaaagaatgcca Dog gtaaacaatgcca Hawaiian monk seal gtaaagaatgcca Hedgehog gcaaagaatatcc Shrew gaaactaatacaa Elephant gaaaagaatgcca Tenrec gacaaaaatgcca Zebrafish ============= X. tropicalis ============= Opossum ============= Chicken ============= Inserts between block 29 and 30 in window B D Dog 189bp Alignment block 30 of 393 in window, 56747944 - 56748024, 81 bps B D Mouse at-gaggtctctataagcaaactcgcc---attttctttcgc-----a-aagacctgc--ctgtaactct B D Rat gt-taggtatctataagcaaattcacc---attttctttcgc-----a-aagacctgc--ctataactct GCF_003668045 at-gaggtatc-gtaagcaaactcacc---attttcttt-gc-----a-aagacctgc--ctgtaacaat Beaver at-aggatatt-ctaagcaagtttgtc---attttcttttat-----a----acttgtaattgtaattcg B D Squirrel at-gggatatt-ataaggaagtttatc---gttttcttttac-----aaaagggcccc--atttatttca B D Guinea pig at-gagtcac--ataagtaagtttgcc---gttttcttttac-----a-a--aactgc---cataatttg B D Rabbit at-gaggaggt-gtgagaaagtctgcc---atttttccttca--tgaa-agggcccat--ccaagctcgt B D Pika -------------tgagaaggtct-----------------------a-agggggca------------- B D Human at-gagaaatg-ataaggaagtttgtc---attttcttttac---taa-acgacccac--ccttaattcg B D Chimp at-gagaaatg-ataaggaagtttgtc---attttcttttac---taa-acgacccac--ccttaattcg B D Bonobo at-gagaaatg-ataaggaagtttgtc---attttcttttac---taa-acgacccac--ccttaattcg B D Gorilla at-gagaaatg-ataaggaagtttgtc---attttcttttac---taa-acgacccac--ccttaattcg B D Rhesus at-gagaaatg-ataaggaagtttgtc---attttcttttgc---taa-agcacccac--ccttaattcg B D Marmoset at-ggaaaatg-ataaggaagtttgtc---attttcttttac---tat-aggacccac--ccttaacttg B D Tarsier at-aagaaatt-atatgaaagtctgtt---attttcttttac---taa-atggcccac--ccttaattct B D Bushbaby gt-gagacatt-acaagaaagtttgtg---actttctttcac---aat-agggcctgc--ctttatatcg B D Tree shrew gt-gagaaatt-ataaggaagtttgcc---attttcttttacaataaa-agggtgtac--c-------ca B D Malayan flying lemur at-gaaaaatt-atgagaaagtttgtc---attttcttttac---aca-agggcctac--ctgtaactca B D Pig ga-gagaaatt-ataggaaagtttgtc---attatctgctac-aaaaa-aaagcaggt------------ B D Dolphin aa-gagaaatt-gtaagaaagtttgtc---actaccttccac---aga-agagcaggt------------ B D Cow ac-aagaaatt-ataagaaagtttgtc---actaccttctgc---aaa-aaagcaggt------------ B D Sheep aaggagaaatg-ataagaaagtgtgtcattaccaccttctgc---aaa-agagcaggt------------ B D Horse at-gagaaatt-ataagaaagcttgtc---gttttcttcgac---aaa-agggcctgt------------ B D Chinese pangolin at-gagcaatt-ataagaaaggttgtc---attttcttttat---aaa-aagggccct------------ B D Dog ag-gggaaatt-atatgaaagtttgca---attttcttttat---aag-aa-gccccc------------ B D Hawaiian monk seal ag-gagaaatt-atatgaaaacttgcc---attttcttttat---aaa-aa-gccctt------------ B D Hedgehog at-gagaaatt-gtaggaaggttgttc----ttttctttgac----aa-agggcctgc------------ B D Shrew gt-gagaaatt-ttaagaaagcttttc---attttcttttac---aaa-agggcctgc---------ata B D Elephant tt-gagaaatt-ataataatgtatatc---attttctttaac---aaa-agggttggc------------ B D Tenrec at-cagaaatt-ataagaacctatata---attttctttaac---aa----ggccagt------------ B D Zebrafish ====================================================================== B D X. tropicalis ====================================================================== B D Opossum ====================================================================== B D Chicken ====================================================================== Mouse ca---------------------------------------------------gcac---cgtgatt--a Rat cagctc--------ac-------------------t-gagc---ggtggt-gtgcgc---catgatt--a GCF_003668045 ctgctc--------ac-------------------a-gaga---ggcggtggtgcgc---agtggtt--a Beaver caattc--------ac-----------------aga-gaga---ggcagt-acctac---aatggtt--a Squirrel ccattc--------at-------------------c-aaat----------atgtgc---aatggtt--a Guinea pig caa--------------------------------a-gaaa---ggcagt-atgtgc---agtgatt--a Rabbit taactc--------gc-------------------a-gagt----------acaggc---agtggag--a Pika ---------------------------------------------------acaggc---agtg--g--a Human taattt--------gc-------------------a-aagaaaaggcagaatagtac---aatggtt--a Chimp taattt--------gc-------------------a-aagaaaaggcagaatagtac---aatggtt--a Bonobo taattt--------gc-------------------a-aagaaaagacagaatagtac---aatggtt--a Gorilla taattt--------gc-------------------a-aagaaaaggcagaatagtac---aatggtt--a Rhesus taattt--------gc-------------------a-aagaaaaggcagaatagtac---aatggtt--a Marmoset caattt--------acaaaaaaaaaaaaaaaaaaaa-aaaaaaaggcagaatagtac---aatggtt--a Tarsier taattc--------gc-------------------a-aagaaaaaatagtgtagtac---aatggtt--a Bushbaby taattt--------gc-------------------a-aagaaaaggcagtatagcac---aatggtt--a Tree shrew taattt--------ac-------------------a-aagaaga-gcagtata-tac---aatggtt--a Malayan flying lemur taattc--------at-------------------a-aagaagaggcagtataggat---aatggtt--a Pig -aattc--------at-------------------a-aagaagagac----gtgta-------------- Dolphin -aattc--------at-------------------a-aagaagaggcatt-atgtac---aat------- Cow -a------------gt-------------------a-cagaagaggcttt-atgttc---agt------- Sheep -a------------gt-------------------a-cagaagaggcttt-atgttc---aat------- Horse -aattg--------gt-------------------a-aggaacaggcagt-atgtac---aatggtt--a Chinese pangolin -aattt--------gt-------------------a-aagaagaagcatt-atgtacaataatagtt--a Dog -cattc--------at-------------------a-aagaagaggcagt-atgtac---aatgattaca Hawaiian monk seal -cattc--------at-------------------a-aagaagaggcagt-ata-gc---attggtt--a Hedgehog -tgttt--------gt-------------------a-aggaagaggtgat-atgttt---agtggtta-- Shrew taattt--------at-------------------atatatacatatata-agattc---aatggtta-- Elephant -aattctcagggaagt-------------------a-gccg-------------tac---catggtt--a Tenrec -agttct-------gt-------------------a-attgattacaatt-gattac---tgtcatc--t Zebrafish ====================================================================== X. tropicalis ====================================================================== Opossum ====================================================================== Chicken ====================================================================== Mouse gaagctcct Rat aaagctcgg GCF_003668045 gacgcctgg Beaver ggagctcca Squirrel gaagctctg Guinea pig ggagttttg Rabbit ggaccacgg Pika ggaccgtgg Human ggagctccg Chimp ggagctccg Bonobo ggagctccg Gorilla ggagctccg Rhesus ggagctcca Marmoset ggagctctg Tarsier ggaggtacg Bushbaby ggagtt-tg Tree shrew -gaactttg Malayan flying lemur ggagctcca Pig --------- Dolphin --------- Cow --------- Sheep --------- Horse ggagctttc Chinese pangolin ggagcccct Dog ggagctccg Hawaiian monk seal ggaactccg Hedgehog --------- Shrew --------- Elephant tgagctctg Tenrec agagttcct Zebrafish ========= X. tropicalis ========= Opossum ========= Chicken ========= Inserts between block 30 and 31 in window B D Elephant 2bp B D Tenrec 177bp Alignment block 31 of 393 in window, 56748025 - 56748065, 41 bps B D Mouse t-ac------gcaccacag-cttcttaagcaagttg-ttt-acccagt----tag B D Rat taac------ccaccacag-cttcttaagcaagcgg-ttt-acccatt----tag GCF_003668045 c-gct-t-tggtactgctg-cttctgaagcaagctg-tta-gctcatt----tag Beaver a-tc------ttttggctg-ctt-----------ta-tt-------tt----tag B D Squirrel a-tc----tagcaccacca-cttcttaagcaagtta-tttaatttttt----tag B D Guinea pig a-cct-tctggtaccactg-cttcttaagc----ta-ttt-aattctt----tag B D Rabbit t--g----aggcacctccg-cttcttctgcaagttc-gtt-----att----tag B D Pika g-ag----aggtgccccag-cttcggaagcaaggtc-gtt-----att------- B D Human a-tc--tctggctgtacga-cttctt-aggaaaata-ttt-aattttt------- B D Chimp a-tc--tctggctgtacga-cttctt-aggaaaata-ttt-aattttt------- B D Bonobo a-tc--tctggctgtacga-cttctt-aggaaaata-ttt-aattttt------- B D Gorilla a-tc--tctggctgtacga-cttctt-aggaaatta-ttt-aatgttt------- B D Rhesus a-tc--tctggctgtacga-ctcctt-cggaaaata-ttt-aattttt----tag B D Marmoset a-tc--tctggctgtatga-cttctt-agtaaaata-ttt-aattttt----tag B D Tarsier a-tc--tcgggcactatca-cttcttcagcaagtta-ttt-aaagttt----tag B D Bushbaby g-gc--tctggcactaccagcttcttaagcaagtta-att-aatttctttttttg B D Tree shrew a-tct-tctgaaactacca-ttttctaagcaaattatttc-atttttt----aag B D Malayan flying lemur a-tct-tctggcaacactg-cttcttaagca------ttt-aattttg----tag B D Pig --------------cattg-ccacggaagcaagtta-ttt-aaccttt----tag B D Dolphin ---------ggcaccattg-ccacttactcaagtta-tt--aaccttt----tag B D Cow ---------ggcaccactg-ccacttaagcaagtta-ttg-aaccttt----tag B D Sheep ---------ggcaccactg-ccacctaagcaagtta-ttt-aaccttt----tag B D Horse a-tct-tcaggcaccacca-ccgcttaggcaagtta-ttt-aaccttt----tag B D Chinese pangolin a-tct-tctggtaccacca-ccatttaagcaagtta-ttt-aacttcc----tag B D Dog a-tct-tctggcacca--g-tcactaaagcaagtta-ttt-aaccttt----tag B D Hawaiian monk seal a-tct-tctggtaccattg-tcactaaagcaagtta-ttt-aaccttt----tag B D Hedgehog ---------aacaatattg-tcaccatagcatgttg-ttt-ggcttct----tag B D Shrew ---------ggcaccccta-ccac---------tta-ttt-accct-t----tag B D Elephant ----cacctggcgccataggctttttaagcaagtta-ttt-aaccttt----taa B D Tenrec ======================================================= B D Zebrafish ======================================================= B D X. tropicalis ======================================================= B D Opossum ======================================================= B D Chicken ======================================================= Alignment block 32 of 393 in window, 56748066 - 56748148, 83 bps B D Mouse -------------------------------------------------agcctcttcattttcttagac B D Rat -------------------------------------------------agcctcttcattttcttagac GCF_003668045 -------------------------------------------------agcc----------------- Beaver -------------------------------------------------agctcc--------------a B D Squirrel -------------------------------------------------agccctc-------------a B D Guinea pig -------------------------------------------------agccttc-------------a B D Rabbit -------------------------------------------------agcctcc-------------g B D Pika ---------------------------------------------------------------------- B D Human -------------------------------------------------agtctct-------------a B D Chimp -------------------------------------------------agtctct-------------a B D Bonobo -------------------------------------------------agtctct-------------a B D Gorilla -------------------------------------------------agtctct-------------a B D Rhesus -------------------------------------------------agtctct-------------a B D Marmoset -------------------------------------------------agtttct-------------a B D Tarsier -------------------------------------------------aacttca-------------a B D Bushbaby -------------------------------------------------agtttac-------------a B D Tree shrew -------------------------------------------------aaccctt-------------a B D Malayan flying lemur -------------------------------------------------agcctcc-------------a B D Pig -------------------------------------------------agtctct-------------g B D Dolphin -------------------------------------------------agactcc-------------a B D Cow -------------------------------------------------agtctct-------------g B D Sheep -------------------------------------------------agtctct-------------g B D Horse -------------------------------------------------agccttc-------------a B D Chinese pangolin -------------------------------------------------agcctcc-------------a B D Dog -------------------------------------------------cacctcc-------------a B D Hawaiian monk seal -------------------------------------------------cacctcc-------------a B D Hedgehog -------------------------------------------------aacctct-------------g B D Shrew -------------------------------------------------gctctct-------------a B D Elephant -------------------------------------------------agcctca-------------a B D Tenrec ggcctcctctcttttggctccactttaaacaatttgtttaaacttgcaacacctca-------------g B D Zebrafish ====================================================================== B D X. tropicalis ====================================================================== B D Opossum ====================================================================== B D Chicken ====================================================================== Mouse -tttcttca-tt-ttcaaaataa-ggaactaatagtcccaaagtcaa----------------------- Rat -tttcttca-tt-ttcaaaataa-ggaactagtaattccaaagtc-a----------------------- GCF_003668045 ------tca-gt-ttcgagataa-gaaaataatagtcccaaagtc------------------------- Beaver -tttcttca-tc-ttcaaaataa-ggatacaatag-cccaacctcaaaaggtgttaca---aaagattca Squirrel -tttcttta-tc-tttaaaagga-agaaataatagtcccaacgtcaaaagatattatg---agacttcaa Guinea pig -tttcttca-tc-cttaaaaatc-ggaaataatagtcctaacctcaaaaggtgttatg---gggatacag Rabbit -tggcttcc-tg-tttaaaagta-ggaaatcatagtgccaggctccaacgaggtcctg---gggactcag Pika ---gcttca-cg-attaaaa---------------tgctaagttgtagagatgtcccc---aggactcac Human -tttcttca-tc-tttaaaacag-ggaaatgatattcccaaccc--agagatgttatg---agtattcaa Chimp -tttcttca-tc-tttaaaacag-ggaaatgatattcccaaccc--agagatgttatg---agtattcaa Bonobo -tttcttca-tc-tttaaaacag-ggaaatgatattcccaaccc--agagatgttatg---agtattcaa Gorilla -tttcttca-tc-tttaaaacag-agaaatgatattcacaaccc--agagatgttatg---agtattcaa Rhesus -tttcttca-tc-tttaaaacag-ggaaatcatactcccaaccc--agaggtgttatg---agtattcaa Marmoset -tttcttca-tc-tttaaaacag-ggagatgatactcccaaccccaagagatgttatg---ggtattcaa Tarsier -atgcttca-tctttttaaatgg-ggaaatgatagtctcaacctcaagagatgttatg---agtattcaa Bushbaby tttttttca-cc-ttaaaaacag-ggaaatgctagttctaacct-----------------------caa Tree shrew -tttttttgatg-tttaaaatga-aggaataatggtcccactctcaagagagattatg---aggatttaa Malayan flying lemur -tttcttcg-tc-tttgaaatgagaaaaataatagtcccaacctccagagatgttaag---agtattcaa Pig -ttttttcg-tc-tatgaaac---agaaataataggcccaacttcaagagatgtt------gagtttcaa Dolphin -ttttttca-tc-tataaaac---ggaaataatagggtcaacctcaagagatgtg------aaatttcaa Cow -ttttttca-ct-tatgaagcac-ggaaataataggcccaacctcaagcagtgtg-------aatttcaa Sheep -ttttttca-tc-tataaaacag-ggaaataataggcccaacctcaagcagtgtg------aaatttcaa Horse -tttcttca-tc-tgtaaaacgg-aga---aatagtcccaacctcaagagatgttgac---aagagtcaa Chinese pangolin -tttcttca-tc-tgtaaaacag-caaaataataatcctaacctcaagagatgttggttgaaagattcag Dog -tttcttca-tc-tgtaaacccg-ggacacaatagtcctaacctcaggagatgttgtg---aagattcaa Hawaiian monk seal -tttcttca-tc-tttaaaaggg-ggaaataatagtcccaacctcaggagatgttgtg---aagattcag Hedgehog -ttttttca-tt-tgtaaaactg-agaa----tagatccagtctcagaagatgttgtg---aaaattcag Shrew -ttttt----tt-catcaaacaa-ggac-------------tctcaagaga---tagg---aagattcaa Elephant -tttcttca-tc-tataaaaaag-ggaaataagagtttcatcctcaagagatgtcatg---aggattcaa Tenrec -tttgttca-tc-tgtaaaaagg-ggaagggatatttccaacctcaggagctgtcagg--------ccca Zebrafish ====================================================================== X. tropicalis ====================================================================== Opossum ====================================================================== Chicken ====================================================================== Mouse --gagtca-------gtacaactatatg Rat --gagtca-------gtacaatgttaag GCF_003668045 -------a-------gtacatcgatagg Beaver gtgagacg-------atgtaaccatatg Squirrel t-gagatg-------atgcaaccatatg Guinea pig t-gagata-------atgcagtcatatg Rabbit g-aagc-a-------gtgcaaccatatg Pika c-gagtgg-------gtgccaccttatg Human t-gagata-------atgcaaccatatg Chimp t-gagata-------atgcaaccatatg Bonobo t-gagata-------atgcaaccatatg Gorilla t-gagata-------atgcaaccatatg Rhesus t-gagata-------atgcaaccatatg Marmoset t-gagata-------atgcaaccatatg Tarsier t-gagata-------gtgcaacctcata Bushbaby --gagata-------atgtaaccatatg Tree shrew t-gaaata-------atgcaaccatatg Malayan flying lemur t-aagata-------atgcaaccatatg Pig t-gaggta-------atgcaaccatgtg Dolphin t-gagata-------atgcaaccatagg Cow t-gtgata-------atacaaccatggg Sheep t-gtgata-------atacaaccagggg Horse t-gagata-------atgcaaccatatg Chinese pangolin t-gagtta-------gtgcaaccatatg Dog t-gagata-------atgcagccctatg Hawaiian monk seal t-gagata-------atgcagccgtatg Hedgehog c-aagaca-------atgcaactgtagg Shrew t-gagata-------atgcaaacatggg Elephant t-gagata-------gtgcgaccatatg Tenrec t-aagatatgtacacatgcaaccatatg Zebrafish ============================ X. tropicalis ============================ Opossum ============================ Chicken ============================ Inserts between block 32 and 33 in window B D Shrew 4bp B D Elephant 212bp Alignment block 33 of 393 in window, 56748149 - 56748168, 20 bps B D Mouse gctggaaagaaacattcatt B D Rat gctcttaggaaacattcatt GCF_003668045 gcccttaggaaacattcatt Beaver gcacatagtaagcattcatt B D Squirrel gcacatagtaagcactcagt B D Guinea pig agccatagtaaatgttcatt B D Rabbit gcacgccataagccctcttc B D Pika gcactcaggaatccctcatt B D Human gcacatagtaagcatttatt B D Chimp gcacatagtaagcatttatt B D Bonobo gcacatagtaagcatttatt B D Gorilla gcacatagtaagcatttatt B D Rhesus gcacatagtaagcatttatt B D Marmoset gcacatagtaaacagttatt B D Tarsier gcacataataagcattcatt B D Bushbaby gcatatagtaagcattcatt B D Tree shrew gcacatagtaagcattcatt B D Malayan flying lemur gcatagagtaagcattcagt B D Pig gcacacagtaagctttcatt B D Dolphin gcacatagtaggcattcatt B D Cow gcacatagtaagtcttcatt B D Sheep gcaca---taagtcttcatt B D Horse gcacacactgaacattcatt B D Chinese pangolin gcacatagtaagcattcatt B D Dog gctcatagtaagcacgcatt B D Hawaiian monk seal gcacatagtaagcttccatt B D Hedgehog ggacattataag----catt B D Shrew tgaca-cataag----catt B D Tenrec gcacacagcaaatattcagt B D Zebrafish ==================== B D X. tropicalis ==================== B D Opossum ==================== B D Chicken ==================== B D Elephant ==================== Inserts between block 33 and 34 in window B D Rabbit 55bp B D Pika 108bp Alignment block 34 of 393 in window, 56748169 - 56748202, 34 bps B D Mouse aagtaa-----------------------cctc--------cctggttaaaaatggcagcaagag B D Rat aagtat-----------------------cccc--------tgtggttaaaaatggcagtgagag GCF_003668045 aaatat-----------------------cccc--------tgtggttccaaatggcagttagag Beaver aactgt-----------------------tacc--------tgtggttataagtggcagttagag B D Squirrel aaagat-----------------------tacc--------tat-gttctaaatggtacagattg B D Guinea pig aaatgt-----------------------tacc--------tgtggttataaatggtagagactg B D Rabbit attttt-----------------------cacccccctttttgaagttataaatggtgtttagag B D Human aagtat-----------------------tgtc--------tgtggttctaagtggcagttaaaa B D Chimp aagtat-----------------------tgcc--------tgtggttctaagtggcagtttaaa B D Bonobo aagtat-----------------------tccc--------tgtggttctaagtggcagtttaaa B D Gorilla cagtat-----------------------tgcc--------tgtggttctaagtggcagttaaaa B D Rhesus aagtat-----------------------tacc--------tgtggttctaagtggcagttaaag B D Marmoset aagtatttattaagcatttattaagtatatacc--------tgtggttctaagtggcagttaaag B D Tarsier aaatat-----------------------tacc--------ta------taagtggcagttagag B D Bushbaby aaatat-----------------------tacc--------tgtggttaaaactgacagataaca B D Tree shrew aaatat-----------------------tacc--------tgtggttataaatggcggttacag B D Malayan flying lemur aaatat-----------------------tagt--------catatttataaatggctattagag B D Pig aaatat-----------------------tacc--------tgtggatacaaatgagggttagcg B D Dolphin aaatat-----------------------tacc----------ctgatagaaatggcgttagag- B D Cow aaatat-----------------------tgcc--------tatggatagaaatggcacttagag B D Sheep aaatat-----------------------tgcc--------tatggatagaataggcattaaata B D Horse aaatat-----------------------tacc--------tgtgcttacaaatgtcggtcagag B D Chinese pangolin gaattt-----------------------tacc--------tgtggttataaatggcagttagag B D Dog aaatag-----------------------tacc--------tgtggttataaatggcggttggaa B D Hawaiian monk seal taatag-----------------------tacc--------tgtggttataaatggcggttggag B D Hedgehog atctac-----------------------tacc--------tatactgatcaatgttgcttagag B D Shrew aaatat-----------------------tacc--------tgtggttataaatggcagttagag B D Tenrec aaatat-----------------------tacc--------tctggttctgagtggtgattaaag B D Pika ================================================================= B D Zebrafish ================================================================= B D X. tropicalis ================================================================= B D Opossum ================================================================= B D Chicken ================================================================= B D Elephant ================================================================= Inserts between block 34 and 35 in window B D Sheep 68bp Alignment block 35 of 393 in window, 56748203 - 56748220, 18 bps B D Mouse acaggctttt--------taaaaaaa B D Rat a----ctttt--------t------- GCF_003668045 attgactttt--------a------- Beaver a----tattt--------t------- B D Squirrel a----ctttt--------a------- B D Guinea pig a-----tttt--------a------- B D Rabbit attaactttt--------a------- B D Human agacacgtgt--------a------- B D Chimp agacacgtgt--------a------- B D Bonobo agacacgtgt--------a------- B D Gorilla agacacgtgt--------a------- B D Rhesus agagacgtgt--------a------- B D Marmoset agagacttgt--------a------- B D Tarsier gatgactttt--------a------- B D Bushbaby ----accttt--------a------- B D Tree shrew attgccttgt--------a------- B D Malayan flying lemur attgactt-t--------g------- B D Pig attgacttct---------------- B D Dolphin attgactca----------------- B D Cow attgactta----------------- B D Horse attgactttt---------------- B D Chinese pangolin attgactttt---------------- B D Dog atcgactttt---------------- B D Hawaiian monk seal attgactttt---------------- B D Hedgehog accgactttt---------------- B D Shrew attgatttctcaagaaca-------- B D Tenrec -ataacattt---------------- B D Sheep ========================== B D Pika ========================== B D Zebrafish ========================== B D X. tropicalis ========================== B D Opossum ========================== B D Chicken ========================== B D Elephant ========================== Inserts between block 35 and 36 in window B D Hedgehog 7bp B D Shrew 227bp Alignment block 36 of 393 in window, 56748221 - 56748234, 14 bps B D Mouse caaaaaacaaaaaa B D Pig ---------aaaaa B D Dolphin ---------aaaaa B D Horse ---------aaaaa B D Chinese pangolin ---------aaaaa B D Dog ---------aaaaa B D Hawaiian monk seal ---------aaaaa B D Guinea pig -------------- B D Sheep ============== B D Rhesus -------------- B D Marmoset -------------- B D Gorilla -------------- B D Bonobo -------------- B D Chimp -------------- B D Human -------------- B D Tenrec -------------- B D Tarsier -------------- B D Tree shrew -------------- B D Hedgehog ============== B D Pika ============== B D Zebrafish ============== B D X. tropicalis ============== B D Cow -------------- B D Opossum ============== B D Chicken ============== B D Shrew ============== B D Elephant ============== B D Squirrel -------------- B D Rabbit -------------- B D Bushbaby -------------- Beaver -------------- B D Malayan flying lemur -------------- GCF_003668045 -------------- B D Rat -------------- Inserts between block 36 and 37 in window B D Pig 6bp B D Dolphin 19bp B D Horse 9bp B D Chinese pangolin 19bp B D Dog 19bp B D Hawaiian monk seal 19bp Alignment block 37 of 393 in window, 56748235 - 56748261, 27 bps B D Mouse aacccaaacaaacaacaaaaacaaaac B D Cow -----------------------aaat B D Tenrec -------------------------a- B D Guinea pig --------------------------- B D Sheep =========================== B D Rhesus --------------------------- B D Hawaiian monk seal =========================== B D Dog =========================== B D Horse =========================== B D Marmoset --------------------------- B D Gorilla --------------------------- B D Bonobo --------------------------- B D Chimp --------------------------- B D Human --------------------------- B D Tarsier --------------------------- B D Tree shrew --------------------------- B D Hedgehog =========================== B D Pika =========================== B D Zebrafish =========================== B D X. tropicalis =========================== B D Opossum =========================== B D Chicken =========================== B D Shrew =========================== B D Elephant =========================== B D Squirrel --------------------------- B D Pig =========================== B D Rabbit --------------------------- B D Chinese pangolin =========================== B D Dolphin =========================== B D Bushbaby --------------------------- Beaver --------------------------- B D Malayan flying lemur --------------------------- GCF_003668045 --------------------------- B D Rat --------------------------- Inserts between block 37 and 38 in window B D Cow 9bp Alignment block 38 of 393 in window, 56748262 - 56748266, 5 bps B D Mouse aaaac B D Rat ---ac GCF_003668045 aaaac Beaver aaagt B D Squirrel aaaat B D Guinea pig agaat B D Rabbit aaagc B D Human aaagt B D Chimp aaagt B D Bonobo aaagt B D Gorilla aaagt B D Rhesus aaagc B D Marmoset aaagc B D Tarsier aaaac B D Bushbaby aaaac B D Tree shrew aaaac B D Malayan flying lemur aaacc B D Sheep aaaac B D Elephant ataac B D Tenrec aaaac B D Hawaiian monk seal ===== B D Dog ===== B D Horse ===== B D Hedgehog ===== B D Pika ===== B D Zebrafish ===== B D X. tropicalis ===== B D Cow ===== B D Opossum ===== B D Chicken ===== B D Shrew ===== B D Pig ===== B D Chinese pangolin ===== B D Dolphin ===== Alignment block 39 of 393 in window, 56748267 - 56748275, 9 bps B D Mouse aagtgatat B D Rat aagtgatac GCF_003668045 aagtgacat Beaver aagcaatat B D Squirrel cagccatat B D Guinea pig cagcagcat B D Pika aaatgatgt B D Human aagtaatat B D Chimp aagtaatat B D Bonobo aagtaatat B D Gorilla aagtaatat B D Rhesus aagtaatat B D Marmoset aagtaatat B D Tarsier aagcaatat B D Bushbaby aagctatat B D Tree shrew aagcaatat B D Malayan flying lemur aggcaatat B D Cow --------t B D Sheep aagcagttt B D Horse --------t B D Chinese pangolin --tgtgtgt B D Hawaiian monk seal --------t B D Hedgehog aagcttttt B D Elephant aagcaattt B D Tenrec aagtggtta B D Dog ========= B D Zebrafish ========= B D X. tropicalis ========= B D Opossum ========= B D Chicken ========= B D Shrew ========= B D Pig ========= B D Rabbit --------- B D Dolphin ========= Inserts between block 39 and 40 in window B D Cow 9bp B D Sheep 9bp B D Horse 3bp B D Chinese pangolin 3bp B D Hawaiian monk seal 3bp B D Hedgehog 21bp Alignment block 40 of 393 in window, 56748276 - 56748308, 33 bps B D Mouse tc------------------ataatatacattgtttagaa---aatccgtagta B D Rat ac------------------ataatattcatggtttagaa---aatctatagta GCF_003668045 tc------------------ataataggcattgtttagaa---aatctatagta Beaver tta---------------tgataatatgctttgtttagag---agcccatagta B D Squirrel tta---------------aaataatacacgttgtttagag---agcccatagca B D Guinea pig tta---------------aaagaatgtactttgtttagag---aggccatagta B D Rabbit -------------------------aagcactgtttatcg-------------- B D Pika ttagagattgact--tttaaaaagcaatcactgtttatcagacgtctcatagta B D Human tta---------------tcagagtatactttgttctgag---agaccatagtc B D Chimp tta---------------tcagagtatactttgttctgag---agaccatagtc B D Bonobo tta---------------tcagagtatactttgttctgag---agaccatagtc B D Gorilla tta---------------tcagagtatacttcgttctgag---agaccatagtc B D Rhesus tta---------------tcagagtatactttgttctgag---agaccatagtc B D Marmoset tta---------------tcagagtatatcttgttcagag---agcccatagtc B D Tarsier tta---------------ggagaatatactttgttccaag---agcccatagta B D Bushbaby tta---------------tcagaatatactttgttcagag---aggccgtactc B D Tree shrew ata---------------ccagaatatagtttgtc-agaa---agtccatggtc B D Malayan flying lemur tta---------------tcagaatatactttgttgggag---agcccatagtt B D Pig ---------------------------actttgttcagag---agcccatagtc B D Dolphin ------------------tcagaatatactttggtcagcc---agctcatagtc B D Cow ------------------tcacaatttactttgatcaggg---aatacatagtc B D Sheep ------------------tcacaatatactttgatcaggg---agttcat---- B D Horse ------------------taagagaatactttgttcagag---agctcattgtc B D Chinese pangolin ------------------tgaggatatactttatttaggg---agctcatagtc B D Dog ------------------tgagaatatactttgttcagag---agctcatagtc B D Hawaiian monk seal ------------------tgagaatagactttattcagag---agctcatagcc B D Hedgehog ------------------tgagtgtatgctttgctctgag---aactc--tgtc B D Elephant -------ttatcc--------gagtattctttgcccagag---agcttatagtc B D Tenrec -------cctcccccactccataatattccttgcttagag---agcttatagtc B D Zebrafish ====================================================== B D X. tropicalis ====================================================== B D Opossum ====================================================== B D Chicken ====================================================== B D Shrew ====================================================== Inserts between block 40 and 41 in window B D Pig 10bp B D Dolphin 10bp B D Cow 10bp B D Sheep 10bp B D Horse 10bp B D Chinese pangolin 10bp B D Dog 10bp B D Hawaiian monk seal 10bp B D Hedgehog 10bp Alignment block 41 of 393 in window, 56748309 - 56748448, 140 bps B D Mouse agaa--------------a---------------------cactt-gtg----acagacaa--taaaa-- B D Rat agaa--------------a---catcctacca------agcatct-atg----acaaacaa--tggaa-- GCF_003668045 agaa--------------a---cattcctcca------agcattt-gtg----acaaacaa--tagga-- Beaver aaaa--------------a----aagtggcga------ggcatttcgtt----acaaacaa--tagaa-- B D Squirrel aaag--------------aaaaaaaaagtcaa------agcattttgct----acaaacac--taaaaag B D Guinea pig aaaa--------------t-----aaagtcaa------gccattttggt----acaagcaa--tagaa-- B D Rabbit -----------------------------gaa------tatactttgtt-----cagacagcctagag-- B D Pika aaaa--------------aaaaaaggtgtgaa------ggcatgttgttacccacaga-----tagag-- B D Human aaaa--------------a------gcttcaa------gagattttgtt----acaaacaa--tagaaag B D Chimp aaaa--------------a------gcttcaa------gggattttgtt----acaaacaa--tagaaag B D Bonobo aaaa--------------a------gcttcaa------gggattttgtt----acaaacaa--tagaaag B D Gorilla aaaa--------------a------gcttcaa------gggattttgtt----acaaacaa--tagaaag B D Rhesus aaaa----------------------cttcaa------gggattttgtt----acaaac-a--tagaaag B D Marmoset aaaa--------------a------gcttcaa------gggattttgtt----acgaacaa--tagaaag B D Tarsier aaaaacaaaacaaaacaaa------acttcaa------ggcattttgtt----acaaacaa--tagaaag B D Bushbaby aaaa--------------a------gctttga------ggcattttgtt----gcaaacaa--tagaaag B D Tree shrew aaaa--------------a------gtgtcaa------ggtattttgct----acaaacaa--tagaagg B D Malayan flying lemur gaaa--------------a------cagtcaa------ggtgttttgtt----acagacaa--tggaaag B D Pig ------------------------------aa------ggtattttgtt----acaaacca--tag---- B D Dolphin ------------------------------aa------ggtattttgtt----acaaacaa--aag---- B D Cow ------------------------------aa------ggtattttgtt----acaaacaa--tag---- B D Sheep ------------------------------aa------ggtattttgtt----acaaacaa--tag---- B D Horse ------------------------------aa------ggcatttcgtt----acaaacaa--tagaaag B D Chinese pangolin ------------------------------aa------ggcattttgtt----acaaacaa--tagaggg B D Dog ------------------------------aa------ggcattttgtt----acaaacaa--tag-agg B D Hawaiian monk seal ------------------------------aa------ggcattttgtt----acaaacgt--tagaagg B D Hedgehog ------------------------------at------agcattttgtc----ggaaacag--tgtg--- B D Shrew ------------------------------accttaaaagcaaaaaaaa----aaaaaaaa--agta--- B D Elephant --------------------aacaagtgtcaa------ggcattttgtt----ccaaacaa--tag---- B D Tenrec --------------------aaaacatttcaa------ggcatttagtt----acaaacaa--tag---- B D Zebrafish ====================================================================== B D X. tropicalis ====================================================================== B D Opossum ====================================================================== B D Chicken ====================================================================== Mouse agtgtacacaaagcctggag-----aacagtagcag----------------gca------ttt-aacag Rat aatgtacagaaagcctggag-----aacagtagcag----------------gta------ttt-aacag GCF_003668045 agtgtacacaaagcatcaag-----aacagtaggga----------------gcatttaacttt-aacag Beaver --cgtatataaagcgctgag-----catagtaacaa----------------gca------ttt-aatag Squirrel agtgcatacaaaacactgaa-----catagtagcaa----------------gca------tttaaaaag Guinea pig aatgtatataaagcactgag-----cttagaaacaa----------------gca------tca-agtat Rabbit tcca---------aacgtag-----catagtagcaa----------------gca------ttt-aatag Pika gctgtgcacatgcagtgtag-----cctagtagcaa----------------acg------ttt-aatag Human agtgtatataaagcacctac-----catagaagcaa----------------gca------ttt-aatag Chimp agtgtatataaagcacctac-----catagaagcaa----------------gca------ttt-aatag Bonobo agtgtatataaagcacctac-----catagaagcaa----------------gca------ttt-aatag Gorilla agtgtatataaagcacctac-----catagaagcaa----------------gca------ttt-aatag Rhesus agtgtatacaaggcacctac-----cagagaagcaa----------------gca------ttt-aatag Marmoset agtgtatataaagcgtctac-----catagaagcaa----------------gca------ttt-aatag Tarsier agtgtatataaagtgcctaa-----cataatagcaa----------------gca------ttt-aatag Bushbaby agtatatataaagctcctac-----cagagcagcaa----------------aca------ttt-attag Tree shrew agtggatataaaacaaccac-----tgtagtagcaa----------------gca------ttt-aatag Malayan flying lemur agt------------------------------------------------------------------- Pig agtgtctataaagcacctagtata-cagagtagcaa----------------gca------ttt-aatag Dolphin agcatctataaagcacctagtata-cagagtagtaa----------------gca------ttt-aattg Cow agtgtctataaagcacctagcata-tagagtagtaa----------------gca------ttt-actag Sheep cgtgtctataaagcacccagcata-tagagtagtaa----------------gca------ttt-aatag Horse agtgtatataaagtgcctagtatt-catagtagcta----------------gca------ttt--atag Chinese pangolin agtgtatacaaagcacctag-----catagtagcaa----------------gaa------ttc-aatag Dog agtgtttttaaagcactgag-----cagagtagcaa----------------gca------ttt-aatag Hawaiian monk seal agtgtttttaaagcacctag-----catagtagcaa----------------gca------ttt-aatag Hedgehog agtgcatgcaaagcgcctacctgg-cctagtagcaa----------------gca------ttt-aatag Shrew -------gcaaggtattttgatggaaataataggaatgactataaaacaccttta------ttt-aacag Elephant agtctatctaaagcatttag-----caaagcagcaa----------------gcg------ttt-aatag Tenrec tagctatctaaagcatttag-----tatagtagcaa----------------aca------ttt-aatag Zebrafish ====================================================================== X. tropicalis ====================================================================== Opossum ====================================================================== Chicken ====================================================================== Mouse gggctcag-tgctgtc-------------------tgga--------gtcacatcatgaagttcagagtt Rat gagctctg-cgctgtct------------------tgga--------atcacatcatgaagttctgagtt GCF_003668045 gggctcag-tgccttctgtt-gctcattg-ttttgggga--------atcacactgtgaagactggagtt Beaver gtgctcag-tgcttattattaggtcatca-tttcttgga--------ataacattgcgaagtatacagct Squirrel gtatttag-tgctttttattagctcacca-tttcttgga--------ataacattgtgaagtatggtttt Guinea pig gtgctcag-agcttttcattag---atca-tttcttgga--------ataacattgtgaagcatagagct Rabbit gtgcccag-tgcttttgattaggtcatca-tttcttgga--------ataacattgtgaagtatagagtt Pika gtgcccag-cacttttgattaggtcatgg-tttcttgga--------ataacattgtgaagtacagagtt Human gcgctcag-tgctttttattaggtcatca-ttgattgga--------ataacattgtgaagtatagagtt Chimp gcgctcag-tgctttttattaggtcatca-ttgattgga--------ataacattgtgaagtatagagtt Bonobo gcgctcag-tgctttttattaggtcatca-ttgattgga--------ataacattgtgaagtatagagtt Gorilla gtgctcag-tgctttttattaggtcatca-tttattgga--------ataacattgtgaagtatagagtt Rhesus gcgcttag-tgctttttattaggtcatca-tttattgga--------ctaacgttgtgaagtatagagtt Marmoset gcactcag-tgctttttattaggtcatca-tttattgaa--------ataacgttgtgatgtatagagtt Tarsier gtgctcag-tgctttttattaggtcatca-tttcttgga--------ataatattgtgaagcatagaatt Bushbaby gtgcttat-tgctccttattagatcatca-ttcctagaa--------ataacat------gtgaagagct Tree shrew atgctcag-tgctttcgatgagatcatca-ttgcttggaagaacatcataacatcatgaagcacagagtt Malayan flying lemur -----------------------------------------------atagtgtc--------------- Pig gtgatggg-ttatgtttactagatcataa-tttcctgga--------ataacattgtaaagtatgaagtt Dolphin gtgctcag-taatgtttattaggtcttca-tttcctgga--------ataacattgtgaagtacagagtt Cow gtgctcag-taatgtttattaggtcatca-tttcctgaa--------ataacattgtgaagtacagagct Sheep gtgctcag-taatgtttattaggtcatca-tttcctgaa--------ataacattgtgaagtatagagct Horse gtgctcag-taggttttattgggtcatca-tttcctgga--------ataacatcgtgaagtatagagtt Chinese pangolin gtgctcag-tagtttttattaagtcatca-tttcttgga--------ataccatcatgaagtatagagtt Dog gtgctcag-gagtttttattaggtcatca-tttgttgga--------ataacatcaggaagtatagagtc Hawaiian monk seal gtgctcag-tagtttttattgggtcatca-tttgttata--------ataacatcaggaagtaaagagtt Hedgehog gtagtcag-ttatttgtatgaggttatcatttttttgga--------atgacaccatgaaatacagaatt Shrew gtattcag-taatttttatgaggtcatta-ttttctgga--------atatcttcatggagtatagagta Elephant gtgtgcag-taatttttattaggtcatca-tttcttaga--------ataacattgtgaagtacagagtt Tenrec acatgcagttaatttttatgaggccatca-tttcttaga--------ataacactgtgcagtatcaggct Zebrafish ====================================================================== X. tropicalis ====================================================================== Opossum ====================================================================== Chicken ====================================================================== Mouse c----aaaa-t-cag---cttctgttcccacaagcagtc Rat c----aaaa-t-cag---ccccagttcccacaatccgtc GCF_003668045 c----agaa-a-aag---ctccaattcccacaggcagtc Beaver g----aaaa-a-tag--tctctaattcccacatgtagtt Squirrel a----aaag-t-------ttctaattcttctgggtagtt Guinea pig g----aaag-a-taa--tctctatttcccatgcaccgtt Rabbit g----aaaa-a-tag--tctctaattcccacatgtagtt Pika g----aaaa-g-tag--cctctaattc------------ Human g----aaaa----ag--tttctaattcccacatgtcatt Chimp g----aaaa----ag--tttctaattcccacatgtcatt Bonobo g----aaaa----ag--tttctaattcccacatgtcatt Gorilla g----aaaa----ag--tttctagttcccacatgtcatt Rhesus g----aaaa----ag--tttctaattcccacatgtcatt Marmoset g----aaaa----ac--tttctaact-ccacatgtcatt Tarsier gaaaaaaaa----ag--tatctaacttccacatggggtt Bushbaby g----aaaa-a-tag--tctctaatccccacactgggct Tree shrew a----aaaaaa-taa--tctc-aattcccacatatagtt Malayan flying lemur -----gaaaaa-tag--tctctaattcccacatgtagtt Pig g----aaaa-a-aag--cctttaatttccacatacagtt Dolphin g----aaaa-t-aaaggtctctaattcccacatgtagtt Cow g----aaaa-a-aaaaa-----gtctcccacatagagtt Sheep g----aaaa-a-aaa--------tctcccccatagagtt Horse g----agaa-a-tag--tctgtaattcccagatattgtt Chinese pangolin g----aaaa-a-tag--tttctaattcccacatacaggt Dog g----aaaa-a-tag--ttttaaattcttacatatagtt Hawaiian monk seal g----aaaa-a-tag--tttttaattctcacatgtagtt Hedgehog g----aaaa-agcag--cctcttttt--cacagatagct Shrew g----aaaa-a-cag--tttgtaatt--ctcgtgtattt Elephant g----aaaa-a-gag--tct-gaattcccacatggagat Tenrec g----ag--------------gattttctacatgtagtt Zebrafish ======================================= X. tropicalis ======================================= Opossum ======================================= Chicken ======================================= Inserts between block 41 and 42 in window B D Human 355bp B D Chimp 84bp B D Bonobo 338bp B D Gorilla 350bp B D Rhesus 82bp B D Marmoset 278bp B D Bushbaby 4bp Alignment block 42 of 393 in window, 56748449 - 56748491, 43 bps B D Mouse agtacattccgtttttt------aca---taaaaagcagctgccccat--ct---aa--- B D Rat aatccatcccg---ttt------gca---taaaaagcagcttcctcat--cg---aa--- GCF_003668045 aatgaa-ccag---cttaaaaaaaaa---aaaaaagcggtttcctcat--cc---aa--- Beaver gatgaacccag---ttt------gta---taagacac----------------------- B D Squirrel gatgaacccag---ctt------atg---tataaaccagccttataat--cc---aa--- B D Guinea pig aatgaaaccag---ttt------ata---catgatgtagtcttata----ca---aa--- B D Rabbit gatgaactcaa---ctt------atg---tgtaaagcagactcataat--gc---aa--- B D Pika ----aactcca---ctt------ata---tgtaaagcaaactcataat--gc---aa--- B D Chimp gtctagctctg---tcg------ccaggttggagtgcagtggcgcgat--ct---ct--- B D Rhesus gtctagctctg---tcc------ccaggctggagtgcagtggcacgat--ct---ca--- B D Tarsier gatgaatccag---ttt------aca---tataaaacagcctcataat--cc---aa--- B D Bushbaby ----agtccaa---t---------------------cagtctcataat--cc---aa--- B D Tree shrew gatgaacac-------t------ata---tataaagctgtctcattat--ccaaaaa--- B D Malayan flying lemur gatgaacccag---ttt------ata---tataaaacagtctcataat--cc---aa--- B D Pig gatgaacatgg---ttt------ata---tataaagcagtattataat--cc---aa--- B D Dolphin gatgaacccag---ttt------ata---tataaagcagcatcataat--cc---aa--- B D Cow gatgaacctag---tta------ata---aataaagcagtattataat--cc---aa--- B D Sheep gatgaacctag---ttt------ata---aataaagcagtgtcataat--cc---aa--- B D Horse gatgaacccag---ttt------aaa---aacaaagcaatgtcataatccca---aa--- B D Chinese pangolin gatgaacccag---ttt------ata---tataaagcagcatcataat---a---aa--- B D Dog gatacacccgg---ttt------att---tatgaagcagtgtcataat--tc---aa--- B D Hawaiian monk seal gataaacccag---ttt------ata---tataaagcagtgtcataat--tc---aa--- B D Hedgehog cataaacccag---ttc------ata---tgtagaacactgtcttaat--cc---aa--- B D Shrew cacgatcctac---tt--------ta---tataaaacagtgtcaaaat--ga---aa--- B D Elephant gatgaatccag---cct------gta------acagctgtctcactgg--cc---caaaa B D Tenrec gatgaagccag---ttt------gcc------atagcagtctcacatg--cc---ccaaa B D Marmoset ============================================================ B D Gorilla ============================================================ B D Bonobo ============================================================ B D Human ============================================================ B D Zebrafish ============================================================ B D X. tropicalis ============================================================ B D Opossum ============================================================ B D Chicken ============================================================ Inserts between block 42 and 43 in window B D Rabbit 3bp B D Pika 15bp B D Chimp 211bp B D Rhesus 47bp B D Tarsier 2bp B D Bushbaby 4bp B D Tree shrew 1bp B D Malayan flying lemur 1bp B D Pig 1bp B D Dolphin 1bp B D Cow 1bp B D Sheep 1bp B D Horse 1bp B D Chinese pangolin 1bp B D Dog 1bp B D Hawaiian monk seal 1bp B D Hedgehog 1bp B D Shrew 1bp Alignment block 43 of 393 in window, 56748492 - 56748499, 8 bps B D Mouse a--ac---------ctcca B D Rat a--ac---------cttcc GCF_003668045 a--aaccttcatagcttca Beaver ---ac---------cttta B D Squirrel a--ac---------attta B D Guinea pig a--cc---------tttta B D Rabbit a--gc---------ctttg B D Pika a--ac---------cttcg B D Chimp a--gc---------caccg B D Bonobo a--gc---------cacca B D Rhesus a--gc---------ctccg B D Marmoset a--gc---------ctcct B D Tarsier a--ac---------tttta B D Bushbaby a--ac---------cttta B D Tree shrew a--ac---------cttta B D Malayan flying lemur a--ac---------cttca B D Pig a--at---------cttta B D Dolphin a--at---------cttta B D Cow a--at---------cttta B D Sheep a--at---------cttta B D Horse t--ct---------ctat- B D Chinese pangolin a--at---------cttt- B D Dog a--at---------cttt- B D Hawaiian monk seal a--at---------cctt- B D Hedgehog attgt---------tgtga B D Shrew a--aa---------tctaa B D Elephant --tgt---------tttta B D Tenrec --tgc---------cttct B D Gorilla =================== B D Human =================== B D Zebrafish =================== B D X. tropicalis =================== B D Opossum =================== B D Chicken =================== Inserts between block 43 and 44 in window B D Chimp 8bp B D Bonobo 8bp B D Rhesus 172bp B D Marmoset 40bp Alignment block 44 of 393 in window, 56748500 - 56748500, 1 bps B D Mouse -t B D Rat -t GCF_003668045 -t Beaver -t B D Squirrel -t B D Guinea pig -t B D Rabbit -t B D Pika -t B D Tarsier -t B D Bushbaby -t B D Tree shrew -t B D Malayan flying lemur -c B D Pig -t B D Dolphin -t B D Cow -g B D Sheep -g B D Hedgehog -t B D Shrew -t B D Elephant c- B D Tenrec g- B D Rhesus == B D Hawaiian monk seal -- B D Dog -- B D Horse -- B D Marmoset == B D Gorilla == B D Bonobo == B D Chimp == B D Human == B D Zebrafish == B D X. tropicalis == B D Opossum == B D Chicken == B D Chinese pangolin -- Alignment block 45 of 393 in window, 56748501 - 56748603, 103 bps B D Mouse agctactttca--ttttc--ctctct---gaatgatgtacc-tgtcagtgaggcttgttt---------- B D Rat agctactttca--cttcc--ctctct---------tgaatc-tctcagtgaagcttgttt---------- GCF_003668045 agctactttca--ttttc--tcctcccttgaatgatgtatc-tgtcagtgaaacttgttt---------- Beaver agttattttca--ttttta-ctctct-tgaattaatgtatc-tggcattgaagcttgttt---------- B D Squirrel agttattttca--ttttta-ctcttt--tgacttacatatg-ttgtaaatcattttattcttttgattta B D Guinea pig agttattttca--ttttt--actgtt---gacttatatgtc-tagtcttaagacttgtag---------- B D Rabbit agttattgtcactttttta-ctccct--tgaattatagaac-tggcgtttaaacttggtt---------- B D Pika ag-----------ttttct-ctccct--taagttataatac-cagcatttacgcttgttt---------- B D Human agtaattttta--ttttct-cttcct--tgaattatagatc-taacattgaaatttgttt---------- B D Chimp agtaattttta--ttttct-cttcct--tgaattatagatc-taacattgaaatttgttt---------- B D Bonobo agtaattttta--ttttct-cttcct--tgaattatagatc-taacattgaaatttgttt---------- B D Gorilla agttattttta--tttgct-cttcct--tgaattatagatc-taacattgaaatttgttt---------- B D Rhesus agttattttta--ttttca-cttcct--tgaattatagatc-tagcattgaaacttgttt---------- B