Simple Tandem Repeats by TRF (AAGAAAAAAAAA)
Position: NC_049169.1:69841631-69841656
Genomic Size: 26
View DNA for this feature (GCF_009769625.2/bCygOlo1.pri.v2 Mar. 2021)

Length of repeat unit12
Mean number of copies of repeat2.2
Length of consensus sequence12
Percentage Match100
Percentage Indel0
Alignment Score = 2*match-7*mismatch-7*indel; minscore=5052
Percent of A's in repeat unit92
Percent of C's in repeat unit0
Percent of G's in repeat unit7
Percent of T's in repeat unit0
Sequence of repeat unit elementAAGAAAAAAAAA
View table schema

Go to Simple Repeats track controls


This track displays simple tandem repeats (possibly imperfect repeats) on the 31 Mar 2021 Cygnus olor/GCF_009769625.2_bCygOlo1.pri.v2/GCF_009769625.2 genome assembly, located by Tandem Repeats Finder (TRF) which is specialized for this purpose. These repeats can occur within coding regions of genes and may be quite polymorphic. Repeat expansions are sometimes associated with specific diseases.

There are 301,579 items in the track covering 15,186,558 bases, assembly size 1,134,186,642 bases, percent coverage % 1.34.


For more information about the TRF program, see Benson (1999).


TRF was written by Gary Benson.


Benson G. Tandem repeats finder: a program to analyze DNA sequences. Nucleic Acids Res. 1999 Jan 15;27(2):573-80. PMID: 9862982; PMC: PMC148217


This track was generated using a modification of a program developed by G. Miklem and L. Hillier (unpublished).


Gardiner-Garden M, Frommer M. CpG islands in vertebrate genomes. J Mol Biol. 1987 Jul 20;196(2):261-82. PMID: 3656447