Multiz Alignments of 35 Vertebrates

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Capitalize exons based on show bases

Place cursor over species for alignment detail. Click on 'B' to link to browser for aligned species, click on 'D' to get DNA for aligned species.
Alignment block 1 of 317 in window, 56739697 - 56739721, 25 bps B D Mouse ccaagtgtgtaga-atcc------------tgg--------tgtaa B D Rat ccaagtgtgtaga-atcc------------tgg--------cgtaa GCF_003668045 ccaagtgtgtagg-atac------------tgg--------tgcag Beaver ccgagcgcgtgga-ttccccacact-----cgc--------tgtaa B D Squirrel ccaagtgtgtgga-ttccccccacc-----tag--------t-tag B D Guinea pig ccaagtgtgtgga-ttcc-tcctcc-----cga--------t-tag B D Rabbit ccaagtgtgtgcg-ataactacccctaagctgg--------catgg B D Pika ccaagagcctgca-ccaactacccctaagacgg--------tgtgc B D Human ccgagtgtactgg-ttcctcccacc-----cag--------tgtag B D Chimp ccgagtgtactgg-ttcctcccacc-----cag--------tgtag B D Bonobo ccgagtgtactgg-ttcctcccacc-----cag--------tgtag B D Gorilla ccgagtgtactgg-ttcctcccacc-----cgg--------tgtag B D Rhesus ccgagtgtactgg-ttcctcccacc-----cgg--------tgcag B D Marmoset ccgagtgtacaga-tccctccaacc-----ctg--------tgtag B D Tarsier cagggtgtgcgga-ttcctcccacg-----cgg--------tgtag B D Bushbaby cggagggcacgga-ttcctcccat------cgg--------tgcag B D Tree shrew cctagtgtgcaga-actcccccacc-----aag--------tgtag B D Malayan flying lemur ---agggtgccg--attccccaacc-----cga--------tgtag B D Pig gctaacgcatggatttttctccacc-----cgg--------tctag B D Dolphin tcgagcgtacgga-ttctctccacc-----tcg--------tgtag B D Cow tagagcgtacgga-gtctctccacc-----cct--------tgaag B D Sheep tcgagcgtacgga-gtctctccacc-----cct--------cgaag B D Horse cgcagcggagggg---ctctctacc-----ccc--------tgtcg B D Chinese pangolin ctgagtgaacgaa-ttctctccacc-----ccg--------tgtag B D Dog tggagcgcccgga-ttctctccacc-----ccg--------tgtag B D Hawaiian monk seal tcgagcgtagggt-ttctctccacc-----ccg--------tgtag B D Hedgehog tgacgctcgggggttcctctctact-----cgc--------tgtaa B D Elephant ccgagcgagcggg--ttcccccact-----cgg--------tggag B D Tenrec cgaagcgtcccgg--tctccccccg-----cggccccccattggag B D Zebrafish ============================================== B D X. tropicalis ============================================== B D Opossum ============================================== B D Chicken ============================================== B D Shrew ============================================== Inserts between block 1 and 2 in window B D Rhesus 1bp B D Marmoset 1bp Alignment block 2 of 317 in window, 56739722 - 56739724, 3 bps B D Mouse cct-- B D Rat cct-- GCF_003668045 cct-- Beaver cct-- B D Squirrel cct-- B D Guinea pig cct-- B D Rabbit tca-- B D Pika cccct B D Human ccc-- B D Chimp ccc-- B D Bonobo ccc-- B D Gorilla ccc-- B D Rhesus ccc-- B D Marmoset ccc-- B D Tarsier ccc-- B D Bushbaby ccc-- B D Tree shrew ccc-- B D Malayan flying lemur ccc-- B D Pig ccc-- B D Dolphin ccc-- B D Cow ccc-- B D Sheep ccc-- B D Horse ccc-- B D Chinese pangolin ccc-- B D Dog ccc-- B D Hawaiian monk seal ccc-- B D Hedgehog ccc-- B D Shrew cct-- B D Elephant ccc-- B D Tenrec tcc-- B D Zebrafish ===== B D X. tropicalis ===== B D Opossum ===== B D Chicken ===== Alignment block 3 of 317 in window, 56739725 - 56739914, 190 bps B D Mouse cctccttcaca-ccctctggtcc-tctagcttc----cagtctcctactgagtaaatatttac------- B D Rat cctccttcaca-ccctctggccc-tccagcttc----cagtcgcctactgagtaaatatttac------- GCF_003668045 tctccttcacacccctctggtcc-tccagcttc----cagtctgctactaagtaaatatttac------- Beaver cctccttcaca-ccctctggccc-gccagcttt----cagtatctcactgagtaaatatttac------- B D Squirrel cctccgtcaca-ctttctggcccggccagcttc----ca-tctcccattgaataaatatttac------- B D Guinea pig catcgctcaca-ctctgaagtcctgctggcttc----cagtcccccactgagtaaatatttac------- B D Rabbit cctccttcaca-ccctct-gcccggccagcttc----cagtttcccactgagtaaatatttac------- B D Pika cctctttcacg-ccctgtggcctgactagcttc----cggtctcccgccgagtaaatatttac------- B D Human cctccttcaca-ctctc-ggccc----ggcttc----cagtctcccactgagtaaatatttat------- B D Chimp cctccttcaca-ctctcgggccc----ggcttc----cagtctcccactgagtaaatatttat------- B D Bonobo cctccttcaca-ctctcgggccc----ggcttc----cagtctcccactgagtaaatatttat------- B D Gorilla cctccttcaca-ctctcgggccc----ggcttc----cagtctcccactgagtaaatatttat------- B D Rhesus ccttcttcaca-ctctcgggcccggctggcttc----cagtctcccactgaataaatatttac------- B D Marmoset cctccttcaca-ctcta-ggcccggctggcttc----cagtctcccactgagtaaatatttac------- B D Tarsier cctccttcaga-ccctccggtccggccagcttc----cagtctcccactgagtaaatatttac------- B D Bushbaby cctccttcaca-ccctctggcccggtctgtttc----cagtctcccactgagtaaatatttag------- B D Tree shrew cctccttcaca-ctctctagtccaaccagcttt----cagtctcccgctgagtaaatatttac------- B D Malayan flying lemur cctttttaaca-cgctctggctcggccaacttc----cagtct-ctactgagtaaatattta-------- B D Pig actccttcaca-ccctccagctccatctgcttc----cagtcccctactgagtaaatatttac------- B D Dolphin cctccttcaca-ccctcccaccctgccagcttc----cagtctcccactgagtaaatatttac------- B D Cow cctccttcaca-agctcgtgtccagccagcttc----cagtctcccactgagtaaatatttac------- B D Sheep cctccttcata-cgctcccgtccagccagcttc----tagtctcccactgagtaaatatttac------- B D Horse cctccttcaca-ccct-ccgcccggccagcttc----cagtctcccactgagtaaatatttac------- B D Chinese pangolin cctccttcaca-gcgtccctcccggccagcttc----cagtctcccactgagtaaatatttac------- B D Dog gctccttccca-ccct-ccccc--gttagcttc----cagtctcctactgagtaaatatttac------- B D Hawaiian monk seal tctccttccca-ccct-ccccc--gctagcttc----cagtctcccactgagtaaatatttac------- B D Hedgehog cttcctccaca-ccctcctgcctgaccaacttccagtcagtctcccactgagtaaatatttac------- B D Shrew tcgccttcaca-ccctcc--cccggccagcttc----cagtctcccactgagtaaatatttac------- B D Elephant cctccttcaca-cgct-ctgcccggccagcttc----cagtctcccactgagtaaatatttac------- B D Tenrec cctcctttaca-cgcg-gggcccggccagcttc----caggcccccactgagtaaatatttac------- B D Opossum cctccttcata-ttccttctctt-gaaaacttg----aagttttctgatgagtaaatatttacattgaga B D Zebrafish ====================================================================== B D X. tropicalis ====================================================================== B D Chicken ====================================================================== Mouse ccagagaaggggtcgcccc--agaggaggcctt----ggagtttaga--gaa-agg-ctttt-ggtttcc Rat ccagagaaggggtcgccct--agaggaggcctt----agcgcccagg--gaa-agg-ctttt-ggtttcc GCF_003668045 ccagagaaggggtcgcccc--agaggaggcctt----agcgcctagggagaa-agg-ctttt-agcttc- Beaver ctagggaaggggtcgccccttggaggaggactttgacagagcctagg--gaa-agg--tttt-ggcttc- Squirrel ccagagaaggggttactcctcggagaaggcctc-gacagcgcctagg--gaa-aag-ctttt-ggcttct Guinea pig ccagaaaaggggtcacccctggtaggaggctct-gatagtgctcaag--gaa-agg-ctttt-ggtttct Rabbit ccagagaaggggtcacccctcagaggagtcctc-agcagcacccaag--gag-aggattttt-ggacgcc Pika ccagagaagaggtcacccctcggaggagtcctc--gcagctccgcgg--gaa-agg-ctttg-ggattct Human ccagagagcgagtcgcccctcggaggaggcctc-gac-gcggctagg--gaa-agg-ctttttggcttct Chimp ccagagagcgagtcgcccctcggaggaggcctc-gac-gcggctagg--gaa-agg-ctttttggcttct Bonobo ccagagagtgagtcgcccctcggaggaggcctc-gac-gcggctagg--gaa-agg-ctttttggcttct Gorilla ccagagagcgagtcgcccctcggaggaggcctc-gac-gcggctagg--gaa-agg-ctttttggcttct Rhesus ccagagagcgggtcgcccctcggaggaggcctc-gac-gcgactagg--aaa-agg-ctttttggcttct Marmoset ccagagagccggtcgcccctcggaggaggcctc-gac-gagactagg--gaa-agg-ctttttggcttct Tarsier ccagagagcgggtcgcccctcggaggaggcctc-aacagcctctagg--gaa-agg-cttttgggcttct Bushbaby tcagagagcgggtcgccccaccgaggaggcctt-gacagcgcctagg--ggatagg-ctttttggcttct Tree shrew ccaaagaacgggttgcccacc---ataggcctc-gaatgcgcctagg--gaa-agg-ctttt-ggcttct Malayan flying lemur ccaaagcacgggtcgctcctccgaggaggcctc-gacagcgtctacg--gaa-agg-ctttt-ggcttct Pig ccagggaatgggtccctcctcagaggaggccca-gacagcaccctaa--gaa-ggg-ctttt-gacttct Dolphin ccggagaacgggtcgctcctcagaggaggccta-gacagcgccctgg--gaa-ggg-ctttt-ggcttct Cow ccggaggacgggtcgctcctccgagaa---cta-gacagagcccttg--gaa-ggg-ctttt-ggcttct Sheep ccggaggac-ggtcgctcctctgagaa---cta-gacagcgccctgg--gaa-ggg-ctttt-ggcttct Horse ccagagaacgggtcgcccctcggaggaggcctc-gacagcgtcc-gg--gaa-ggg-ctttt-ggcttct Chinese pangolin ccagagaacgggtcgcccctcagaggaggcctt-gacagcgccctgt--gaa-ggg-ttttc-ggctttt Dog cctgagagagggtagccccttggaggaggcctc-gacagcaccctgg--gaa--gg-ctttt-gacttct Hawaiian monk seal ccagagaacgggtagcctcttggaggaggcctc-gacagcaccctgg--gaa-ggg-ctttg-ggcttct Hedgehog ccagagaactggtcgacccttagtggaagcctcggacagtgcccagg--gaa-gaa-ctttc-agcttct Shrew ccagggaacaggtcgcccctctgaggaggtctc-caccgcgccctgg--gaa-gga-ctttt-ggcttct Elephant ccagagaacggttcgcccctgggaggaggcctc-gccagcgacaagg--gaa-gga-cgttt-ggctttc Tenrec ccagagaacgggtcgcccctgggaggaggcctc-gccagcgcccagg--gaa-gga-ctttt-ggcttt- Opossum actgagaacggatctcccctaaaagga-------------------a--gct-gag-gtttt-ggttttt Zebrafish ====================================================================== X. tropicalis ====================================================================== Chicken ====================================================================== Mouse ttc---tg-----gcccgagccagctgcaggccttt----ctggttgtgttttgg--ttttggtcttaga Rat ttc---tg-----gcccgagccagctgcgggccttt----ctggttatgttttgg--tttgggtcttaag GCF_003668045 -tc---tg-----gcctgagccagatgcaggccttt----ctggccatgttttgg--ttttggtcttaag Beaver -tc---tg-----------ggcagctgcaggcctta----ctggttatgttttgg--ttttggtcttaaa Squirrel ccc---tg-----gctagaaccagctgcaggcctta----ctgattgtgttttgg--ttttggtcttaaa Guinea pig ccc---tg-----gcctgagccagctgtaggcctta----caggttgtgttttgg--ttttagtcttaaa Rabbit ccc---caccaccaccagaagcagctgcaggcctta----ctggttgtgttttgg-tttttggtcttaaa Pika ctg---agaggccatt---agcagctgcaggcctta----ttgggtatgtgtgggttttttggtctttaa Human ccc---tg-----gcctgagccagctgcaggcctta----ctg---gtgttttgg--ttttggtcttaaa Chimp ccc---tg-----gcctgagccagctgcaggcctta----ctggttgtgttttgg--ttttggtcttaaa Bonobo ccc---tg-----gcctgagccagctgcaggcctta----ctggttgtgttttgg--ttttggtcttaaa Gorilla ccc---tg-----gcctgagccagctgcgggcctta----ctgattgtgttttgg--ttttggtcttaaa Rhesus ccg---cg-----gcctgagccagctgcaggcctta----ctggttgtgttttgg--ttttggtcttaaa Marmoset ccc---cg-----gcctgagccagctgcaggcctta----ctggttgtgttttgg--ttttggtcttaaa Tarsier ccc---tg-----gcctgagccagctgcaggcctta----ctggttgtgttttgg--tttgggtcttaaa Bushbaby ccc---tg-----gcctgagccagctgcaggcctta----ctggttgtgttttgg--ttttggtcttaaa Tree shrew cct---ct-----gcctttgtcagctgtaggcctta----ctggtcctgttttgg--ttttggtcttaaa Malayan flying lemur ctc---cg-----gcctgagccagctgcaggcctta----ccggttgtgttttgg--tttgggtcttaaa Pig tct---gg-----gcctgtgtcaactgcaggcctta----ctggttgtgttgtgg--tttgggtcttaaa Dolphin ccc---cg-----gcctgtgtcagctgcagacctta----ctggttgtgttttgg--ttttggtcttaaa Cow tcc---cg-----gcctatgtcagctgcaggactta----cttgttgt------g--ttttggtcttaaa Sheep tcc---cg-----gcctgtgtcagctgcaggactta----c---ttgt------g--ttttggtcttaaa Horse ccc---cg-----gcctgtgtcagctgcaggcctta-----cggtcgtgttttgg--ttttggtcttaaa Chinese pangolin ccc---cg-----gcctgtgtcagctgcaggccttaatggttggttgtgttttgg--ttttggtcttaaa Dog ccccctcg-----gcctgtgttagctgcaggcctta----ctggttgtgttttgg--ttttg-------- Hawaiian monk seal ccc---cg-----gcctgtgtcagctgcaggcctta----ctggttgtgttttgg--tttggtcttttag Hedgehog ccg---ag-----gcctgagtcagcttcaagcctta----cagacagtgttttgg--tttgtgtctggtg Shrew ccg---tg-----gcctgtgtcagctgcaggccttg----ctggctgtgttttgg--ttgtggtcttaaa Elephant tcc---cg-----gtctgagtcagctgcaggcctta----ctgattgtgttttgg--ttttgttcttaaa Tenrec tcc---tt-----gtctgagtcagctgcaggcctta----ctggttgtgttttgg--ttttgttcttaaa Opossum ctt---cc-----atttga---aactgtaag---------ggatttgtgcttttc--atttgtctttaaa Zebrafish ====================================================================== X. tropicalis ====================================================================== Chicken ====================================================================== Mouse tttt--tcctttca-gtaaa---------a Rat tttc--ccctttta-gtaaa---------a GCF_003668045 tttc--tcctttta-gtaga---------a Beaver ttt-----ctttta-gtcca---------g Squirrel ttt----cctttta-atcga---------a Guinea pig tttc--ctccctca-gccga---------a Rabbit tttc--ttcattta-gtcaa---------a Pika tgtc--t---tttg-gtttaatgtctttta Human tttc--tcctttta-gtcga---------a Chimp tttc--tcctttta-gtcga---------a Bonobo tttc--tcctttta-gtcga---------a Gorilla tttc--tcctttta-gtcga---------a Rhesus tttc--tcctttta-gtcga---------a Marmoset tttc--tcctttta-gttga---------a Tarsier tttc--tcctttta-gttga---------a Bushbaby tttc--t--tttta-gtcga---------a Tree shrew tttc--ccctcct---tag----------- Malayan flying lemur tttc--ctcttcta-gtaga---------a Pig ------tttcttta-gtgga---------a Dolphin ------tttcttta-gtcga---------a Cow ------tttcttta-gctga---------a Sheep ------tttcttta-gccga---------a Horse t-----ttctttta-gtcga---------a Chinese pangolin t-----ttcttgta-gtcga---------a Dog ------gtctttta-gttga---------c Hawaiian monk seal aagaaattccttta-gtaga---------c Hedgehog t-----ttctttca-gtgga---------a Shrew t-----ttctttta-ggcga---------a Elephant tttc--ccctttta-attga---------a Tenrec tttc--ctttttaaggtcga---------a Opossum tata--tctttgca-gtcaa---------a Zebrafish ============================== X. tropicalis ============================== Chicken ============================== Inserts between block 3 and 4 in window B D Opossum 2729bp Alignment block 4 of 317 in window, 56739915 - 56739994, 80 bps B D Mouse a-ttctcctgattccccca----tgacc--tctt--ggatccagatc--tca--gtaa----cca-g-gg B D Rat a-tgctcccgattcctcta----tgacc--tctt--gagtccagat---tca--gtaa----ccc-g-gg GCF_003668045 a-ttctcccaattcctata----tgacc--tcct--ggatccagact--tca--gtaa----cca-g-gg Beaver a-ctcttccaagccctgtg----tgatc--tc-t--gggtccagagcgagca--gtaa----cca-gagg B D Squirrel a-ttcttccgatccctgtg----tgatc--tcct--gcgtccagaaggggca--gtaa----cca-gggg B D Guinea pig a-ttcttccagctcctgtg----tgatt--tcct--ggatttggaacaggca--gtaa----cta-aggg B D Rabbit a-ttcttccgatccc--tg----tgatc--tcct--gggtatagagtgagca--gtaa----aca-gggg B D Pika g-ttcttccgaaccc--tg----tcagc--tcct--gggcccggagtaagca--gtaa----aca-gggg B D Human a-ttcttccgatctctttg----agatc--ttct--gagtccagagtgagcagtgtaa----cca-ggcg B D Chimp a-ttcttccgatctctttg----agatc--ttct--gagtccagagtgagcagtgtaa----cca-ggcg B D Bonobo a-ttcttccgatctctttg----agatc--ttct--gagtccagagtgagcagtgtaa----cca-ggcg B D Gorilla a-ttcttccgatctctttg----agatc--ttct--gagtccagagtgagcagtgtaa----cca-ggcg B D Rhesus a-tttttcccatctctttg----tgatc--ttct--gggtccagagtgagca--gtaa----cca-aggg B D Marmoset a-ttcttctaatctctttg----tgatc--tcct--gggtccagactggcca--gtac----cca-gggg B D Tarsier a-ttcttccgattccactg----tgatc--tcct--ggatccagagtgggca--gtaa----cca-gggg B D Bushbaby a-ttcttccgattcctgtg----tgacc--tcct--aagtccagagcgggca--gtaa----cct-gggg B D Tree shrew ---ttttctgatccccgtg----tgatt--tcc---acgtccagagatggca--gtga----ctt-ggga B D Malayan flying lemur t-ttcttccgatctctgtg----tgatc--tcct--gggtccagagcgggca--gtaa----cca-aggg B D Pig a-tacttccgatctctgtg----tgatc--tcct--gggttctgagggggca--gtaa----cca-gggg B D Dolphin a-ttcttccgatctctgtg----tgatc--tccc--gggttcagagcaggca--gtaa----cca-gggg B D Cow a-ttcttccgatctctgtg----tgatc--tcct--gggttcggagggggca--gtaa----cca-gggg B D Sheep a-ttcttccgatctctgtg----tgatc--tcct--gggttcggagggggca--ttaa----cca-gagg B D Horse a-ttcttcccttctctgtg----tgatc--tccc--gggtccagaccaggca--gtaa----ccaggggg B D Chinese pangolin a-ttcttccgatctctggg----tgatc--tccc--agatctagagccggca--gtaa----cca-gggg B D Dog a-tttttccgatctcagtg----taactgagtct--gggtccacagcgggca--gtaa----tcg-ggca B D Hawaiian monk seal attttttccgatctctttg----taatc--ttcc--gggtccgcagcgggca--gtaa----cca-ggga B D Hedgehog a-ttcttcccatctctgtg----ttctc--cctccagagttctgagcggata--gtaagtagtca-gggg B D Shrew a-ttcttcctttctccatg----tgatc--tctc--aggtccagagcgggca--gaaa----cca-gggg B D Elephant a-ttcttccgacccctgagtgtatgatc--tcct--gggtccggagcgggca--gtaa----cca-cggg B D Tenrec a-ttcttccgaccccggcg----tgatc--tccc-----------ccaggca--gtaa----cca-gggg B D Zebrafish ====================================================================== B D X. tropicalis ====================================================================== B D Opossum ====================================================================== B D Chicken ====================================================================== Mouse gccctggacctcagtgaccctt-gctcttt Rat gccctggacctcagtaaccctt-gctcttt GCF_003668045 tccctgaccctcagtgaccttc-tcacttt Beaver gcgctgaccccaagcgaccctt-gctcttt Squirrel gcgctgaccccaggtgaccctt-gctattt Guinea pig gagctgccccttcctgactttt-actctgt Rabbit gtactgaccccagctgaccctt-gctctct Pika gtgctgaccctgcctgaccctt-gttctct Human gca--gactccagctgaccctt-gttcttg Chimp gca--gactccagctgaccctt-gttcttg Bonobo gca--gactccagctgaccctt-gttcttg Gorilla gca--gactccagctgaccctt-gttcttg Rhesus gcactgactccagctgaccctt-gttcttt Marmoset gcagtgactccagctgactctt-gtttttt Tarsier gcg----------ctgaccctc-gt----- Bushbaby gcgctgaccccagttgaccctc-gctcttt Tree shrew accctgaccccatttgaccctt-gttcccc Malayan flying lemur gcactgaccccagctgaccttt-gtt---- Pig gcgctgacctcaactgaccctt-gcttttt Dolphin gcgctgacctcaactgaccctt-gcttttt Cow gcgctgacctcaactgaccctt-ccttttt Sheep gcgctgacctcaactgaccctt-ccttttt Horse gcgctgaccccagctgaccctt-gttcttt Chinese pangolin gcgctgaccccagctgaccctt-attcttt Dog gcgctgaccccagctgccccttggctcttt Hawaiian monk seal gcgctaaccccagctgccccttggctcttt Hedgehog gccttgaccccagctgaccctt-gctcttt Shrew gcactgaccccagctgaccctt-actcttt Elephant gcgctgaccccagctgaccctt-gcttttt Tenrec gcgctgcccccagctgaccctt-gctcttt Zebrafish ============================== X. tropicalis ============================== Opossum ============================== Chicken ============================== Inserts between block 4 and 5 in window B D Rabbit 4bp B D Pika 1912bp Alignment block 5 of 317 in window, 56739995 - 56740095, 101 bps B D Mouse cttgaagtcctgcatct--c-tatgtcca-------cta-------gggc-tcactgg------------ B D Rat cttcaagttctgtatcc--c-tatgttca-------cta-------gggc-tcactgg------------ GCF_003668045 cttgaagtcctgcatct--c-tatgccca-------gga-------aggc-tcactggt--act------ Beaver cttgaactcctcttcct--c-tcctctc---------------------c-tctcctc------------ B D Squirrel ctccaagtcccgtatcc--c-tattctc------------------------------------------ B D Guinea pig ctcaaagttttacattc--c-tgtgccta-------cag-------gggt-tcactga------------ B D Rabbit ctcttagtcctacatcc--t-taggccca-------ccatctgtctgggt-ttactgga--ccttagtgc B D Human ttctaggtcctgcatcc--t-tacattca-------tcg-------ggac-tgaccaga--cctt----- B D Chimp ttctaagtcctgcatcc--t-tacattca-------tcg-------ggac-tgaccaga--cctt----- B D Bonobo ttctaagtcctgcatcc--t-tacattca-------tcg-------ggac-tgaccaga--cctt----- B D Gorilla ttctaagtcctgcatcc--t-tacattca-------tcg-------ggac-tgaccaga--cctt----- B D Rhesus ctctaagtcctgcatcc--t-tacgttca-------tcg-------ggac-tgaccaga--cctt----- B D Marmoset ctctaagtcctacgtcc--t-tacgccca-------ttg-------gaac-tgactata--cctg----- B D Tarsier -tctaagtccttcatcc--c-tatgcccacc----ctcg-------gggc-ttactaga--cttc----- B D Bushbaby ctcaaaatcttacatgc--t-tgtgccca-------cca-----ccaggc-ttactaga--cctt----- B D Tree shrew cccccattccaacctc---c-taaacccaca----gttg-------gggctttactaaa--tctt----- B D Malayan flying lemur cttaaagtcctgcatct--c-tacgcctacc----gtaa-------gagc-ttattgga--cctt----- B D Pig ct-------ctgaatcc--c-tacgcccactgtgggtag-------cggt-ttactggt--cctc----- B D Dolphin ct-------ctgcatcc--c-tacgcccatcgtcggtcg-------aggc-ttactgtc--cctt----- B D Cow ct-------ctgcatcc--c-tacgctcaccatcagtcg-------aggc-ttattggc--cctt----- B D Sheep ct-------ctgcatcc--c-tacgctcatcatcagtcg-------aggc-ttattggc--cctt----- B D Horse cgctaagtcctgcatcc--t-tatgcccacc----gttg-------aggt-ttaccggc--cctt----- B D Chinese pangolin ctccaagtcctgcatccctt-tacactcacc----gtcg-------aggc-ttattggc--cctt----- B D Dog ctccaagttctgcgtcc--c-taggcccact----gtcg-------aggc-ttactggc--cctt----- B D Hawaiian monk seal ctcgaagtcctgcgtcc--c-taggcccacc----gtcg-------aggc-ttaccagc--cctt----- B D Hedgehog cttgcagcccaacccac--t-agagcgctcc----ctct-------ggcc-ctcccgcccgcctt----- B D Shrew atagcagc-------------------------------------------------cttgcatt----- B D Elephant --cacagacctgcacct--tattcgcccacc----gtct-------ggcc-ttgctggc--cgtc----- B D Tenrec --cccagccctgcatcc--c-ttcgcccacc----gtct-------agcc-ttactgtc--ttgc----- B D Pika ====================================================================== B D Zebrafish ====================================================================== B D X. tropicalis ====================================================================== B D Opossum ====================================================================== B D Chicken ====================================================================== Mouse --agg--------------gc------t--------------ctcttct--------------------- Rat --agg--------------gc------t--------------ctcttct--------------------- GCF_003668045 --aag--------------tt------t--------------cttttcc--------------------- Beaver --aag--------------tc------t--------------cctctgc--------------------- Squirrel ---------------------------t--------------ctcttct--------------------- Guinea pig --atc--------------ag------t--------------ctctttc--------------------- Rabbit ccagt--------------gc------t--------------cttctct--------------------- Human --agt--------------gt------t--------------ctctctt--------------------- Chimp --agt--------------gt------t--------------ctctctt--------------------- Bonobo --agt--------------gt------t--------------ctctctt--------------------- Gorilla --agt--------------gt------t--------------ctctctt--------------------- Rhesus --aga--------------gt------t--------------ctctctc--------------------- Marmoset --aat--------------gt------t--------------ctttctc--------------------- Tarsier --agt--------------gtaccctct--------------ctctctc--------------------- Bushbaby --agt--------------gc------t--------------ctctctt--------------------- Tree shrew --aat-------------------------------------ctctctc--------------------- Malayan flying lemur --agt--------------ga------g--------------cgctctc--------------------- Pig --aca--------------gt------tttagtcagtttcaatctccct--------------------- Dolphin --act--------------gt------t--------------tctctct--------------------- Cow --act--------------gt------t--------------tctctct--------------------- Sheep --act--------------gt------t--------------tctctct--------------------- Horse --agt--------------gt------t--------------tctc--t--------------------- Chinese pangolin --aatttccaccccaccacgc------t--------------tccccat--------------------- Dog --tac--------------gt------c--------------tctccct--------------------- Hawaiian monk seal --tag--------------gt------t--------------tctctctctccctccctcccgcctgccc Hedgehog --cct--------------ct------t--------------tccatct--------------------- Shrew --tct--------------gt------g--------------cctatct--------------------- Elephant --agc--------------gt------c--------------ctc-tct--------------------- Tenrec --agg--------------gc------t--------------ctcttct--------------------- Pika ====================================================================== Zebrafish ====================================================================== X. tropicalis ====================================================================== Opossum ====================================================================== Chicken ====================================================================== Mouse -----cc----atctcctacc-------------------------------------ctcttctacc-- Rat -----cc----ctcccctact-------------------------------------ctcttctacc-- GCF_003668045 -----cc------------ct-------------------------------------ctctctggtc-- Beaver -----cctcctctcctctcct-------------------------------------ctcttctctt-- Squirrel -----ct------------ct-------------------------------------cccttc------ Guinea pig -----cc--------tgttcc-------------------------------------cccttgtgtc-- Rabbit -----ag----ctcgccttct-------------------------------------ttcctccatc-- Human -----tt------------cc-------------------------------------ttccttcat--- Chimp -----tt------------cc-------------------------------------ttccttcat--- Bonobo -----tt------------cc-------------------------------------ttccttcat--- Gorilla -----tt------------cc-------------------------------------ttccttcat--- Rhesus -----tt------------cc-------------------------------------ttctcccatc-- Marmoset -----tt------------cc-------------------------------------ttcctctatc-- Tarsier -----tt------------cc-------------------------------------ttcctccctt-- Bushbaby -----t--------------c-------------------------------------ctcctccatt-- Tree shrew -----tt------------tc-------------------------------------tccccgtac--- Malayan flying lemur -----tt------------ct-------------------------------------t----------- Pig -----cc------------ct-------------------------------------tccttcctc--- Dolphin -----ct------------ct-------------------------------------ccctac--c--- Cow -----tt------------ct-------------------------------------c----------- Sheep -----tt------------ct-------------------------------------c----------- Horse -----ct------------c-------------------------------------------------- Chinese pangolin -----tt------------c-------------------------------------------------- Dog -----cc------------ca-------------------------------------gttctagccctc Hawaiian monk seal gcctgcc------------cg-------------------------------------cctctagccctc Hedgehog -----tt------------ctctccaatagtcttttactggggttgggagggtgtgggctacccagccac Shrew -----ta------------cc-------------------------------------ccacccggc--- Elephant -----gt------------ct-------------------------------------cacccacatc-- Tenrec -----gt------------tt-------------------------------------cgcc----tc-- Pika ====================================================================== Zebrafish ====================================================================== X. tropicalis ====================================================================== Opossum ====================================================================== Chicken ====================================================================== Mouse -----------------------cactccttc---atttcttg--tctctc---acc Rat -----------------------catttctgc---attccttcc-tctctc---acc GCF_003668045 -----------------------catttgtgc---attccttcc-tct--------c Beaver -----------------------cccttctcc---tcttctcc--ttcctc---ccc Squirrel ------------------------------------ttcctaa--ttcctc---tcc Guinea pig -----------------------tccatctct---gtccctccg-tttttc---cat Rabbit -----------------------cttcttgcccagattgcttt--tttttt---ttt Human -----------------------cctctttct---ctgcctcagatccgtc---gtc Chimp -----------------------cctctttct---ctgcctcagatccgtc---gtc Bonobo -----------------------cctctttct---ctgcctcagatccgtc---gtc Gorilla -----------------------cctctttct---ctgcctcagatccgtc---gtc Rhesus -----------------------cctctttct---ctccctcagatccgtc---gtc Marmoset -----------------------cctctttct---ctccctcagatccgtc---gtc Tarsier -----------------------cctctttcc---ttccctcagatctgtc----tc Bushbaby -----------------------cttcttttt---ctcccttagatctg------tc Tree shrew -----------------------ctctgcccc---tctcctctgctttcaccctttt Malayan flying lemur -----------------------------tcc---ttcccttagatgtctagtggtc Pig -----------------------cctccttcc---tttctccccacc---------- Dolphin -----------------------ccccatccc---tccccccccacc---------- Cow -----------------------------ccc---ccgccccacacc---------- Sheep -----------------------------ccc---tcgccccacacc---------- Horse -----------------------cctctttat---ctccttcaggtc---------- Chinese pangolin -----------------------cgtcattcc---ctccttcaggtc---------- Dog tagt-------------------cctctttcc---cttcttctggtc---------- Hawaiian monk seal gagt-------------------cctctttcc---ccttttcaggtc---------- Hedgehog agagctcagtctgtgaatgggagtaccaaccc---cttcct---------------- Shrew -----------------------tccctcccg---ctccgt---------------- Elephant -----------------------cctccagtc---agtcagctgct----------- Tenrec -----------------------cagtcagtt---cgccagcggct----------- Pika ========================================================= Zebrafish ========================================================= X. tropicalis ========================================================= Opossum ========================================================= Chicken ========================================================= Inserts between block 5 and 6 in window B D Pig 21bp B D Cow 23bp B D Sheep 23bp B D Horse 7bp B D Chinese pangolin 6bp B D Dog 7bp B D Hawaiian monk seal 7bp B D Hedgehog 14bp B D Shrew 14bp Alignment block 6 of 317 in window, 56740096 - 56740216, 121 bps B D Mouse tcacacatctccgccctcctggtt-----------------tt---------tgct-aagactcctggga B D Rat tcacacatctccttcctcttggtt-----------------tt---------tgct-cagacttcaggga GCF_003668045 tctcacacctcctctctccccact-----------------tt---------tgct-aggactccagaaa Beaver tc---catcagtggtctcccccgc-----------------gc---------ggct-cgg-ctgctgg-- B D Squirrel tc---caggtcag-----------------------------t---------tgct-ctggctc------ B D Guinea pig tccc-cagatcca-----------------------------t---------tgcc-----ctcagcggg B D Rabbit taactcgggatcagagtgtgctttgag----aaggc-----tt---------cact-cag---------- B D Human tc----------------------------------------t---------cggt-cggtctcagcggg B D Chimp tc----------------------------------------t---------cggt-cggtctcagcggg B D Bonobo tc----------------------------------------t---------cggt-cggtctcagcggg B D Gorilla tc----------------------------------------t---------cggt-cggtctcagcggg B D Rhesus tc----------------------------------------t---------gggt-cggtctcagcggg B D Marmoset tc----------------------------------------t---------cggt-ggagctcag---- B D Tarsier tc----------------------------------------t---------cgct-tcggtttagcggg B D Bushbaby tc----------------------------------------t---------tgct-cgggctcagcggg B D Tree shrew tc----------------------------------------tctgctcgtacact-cgggctcagccca B D Malayan flying lemur tc----------------------------------------t---------cgct-ccggctcaactga B D Pig gg----------------------------------------t---------cactcggttctcatcagg B D Cow gg----------------------------------------t---------cact-gtctctcgccggg B D Sheep gg----------------------------------------t---------cact-gtctttcgccggg B D Horse tc----------------------------------------t---------cgtt-ggggcttattggg B D Chinese pangolin tc----------------------------------------t---------cgct-ggggctcatcagg B D Dog tc----------------------------------------t---------ctct-tgggctcttctat B D Hawaiian monk seal tc----------------------------------------t---------cgct-cgggctcttcgat B D Hedgehog tt----------------------------------------t---------ctatctgctcccctgaag B D Shrew tc----------------------------------------t---------ctcctgtctcttctcagg B D Elephant -------------------------tgggacaaggccatctct---------cgct-cgggctcagcggg B D Tenrec -------------------------tgagacaaggccatcgct---------cgcc-agggctcagcggg B D Pika ====================================================================== B D Zebrafish ====================================================================== B D X. tropicalis ====================================================================== B D Opossum ====================================================================== B D Chicken ====================================================================== B D Dolphin NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN Mouse tc-------------------------------------tgtggc--tac----------t--tgat-cc Rat tc-------------------------------------acccgc--tgc----------t--tagc-cc GCF_003668045 tc-------------------------------------acaggc--tcc----------a--tggc-ct Beaver ----------------------------------------ctggc--tac----------c--tcgc-cc Squirrel ------------------------------------------agc--tat----------t--tcgc-cc Guinea pig tc-------------------------------------actgtc--tac----------t--tcac-cc Rabbit -c-------------------------------------accagc--acc----------t--t--c-ca Human tc-------------------------------------gctgac--tac----------c--tcgc-cc Chimp tc-------------------------------------gctgac--tac----------c--tcgc-gc Bonobo tc-------------------------------------gctgac--tac----------c--tcgc-gc Gorilla tc-------------------------------------gctgac--tac----------c--tcgc-cc Rhesus tc-------------------------------------gctgac--tac----------c--tcgc-cc Marmoset -----------------------------------------tgcc--tgc----------c--tcgc-cc Tarsier tc-------------------------------------g-tgactatac----------c--tcgc--c Bushbaby tg-------------------------------------tctgga--tgc----------c--ttgctcc Tree shrew tg-------------------------------------gctggc--tac----------a--c------ Malayan flying lemur tc-------------------------------------gccggc--tac----------t--c-gc-cc Pig tcaccag--------------cacactggtctctgggctcctggc--tac----------c--tggc-ca Cow tc-------------------------------------tcaggc--tac----------c--tggc-ca Sheep tc-------------------------------------tcaggc--tac----------c--tggc-ca Horse tc-------------------------------------gccggc--tacctagccacggc--taga-ta Chinese pangolin tc-------------------------------------gccggc--tac----------c--tggt-ca Dog tt-------------------------------------g--------------------------c-ca Hawaiian monk seal tt-------------------------------------gcctgc--tac----------c--tgac-ca Hedgehog ct-ttagctagtgtacacacacacacacacacacacacacacact--cac----------c--agga-gt Shrew cc-ttag---------------------------atgcccgctgc--tac----------c--tggc-ca Elephant cc-------------------------------------gcgggc--tac----------c--tcgc-tc Tenrec cc-------------------------------------gcgggc--tcc----------aagtggc-cc Pika ====================================================================== Zebrafish ====================================================================== X. tropicalis ====================================================================== Opossum ====================================================================== Chicken ====================================================================== Dolphin NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN Mouse c-----ta-g--ggcact-gt--gtg--------------------------cccttgcttgggaagggg Rat c-----ta-g--ggtacttgt--gtg--------------------------cccttgcttgagaaggga GCF_003668045 c-----ca-g--gacacc-at--gtg--------------------------cc----cacgggaaggga Beaver c-----tata--gtcaat-gt--acg--------------------------ctc----------aggga Squirrel c-----taca--ctcagt-gt--gcg------------------------acccctgacccccgttcgga Guinea pig c-----taca--cttggt-gt--gca--------------------------ccc----------aggga Rabbit c-----ta-a--gatatt-gtcgctg--------------------------ctc------------tgt Human t-----agca--ctcggt-cc--gcg--------------------------ccc---------cgggaa Chimp t-----agca--ctcggt-cc--gcg--------------------------ccc---------cgggaa Bonobo t-----agca--ctcggt-cc--gcg--------------------------ccc---------cgggaa Gorilla c-----agca--ctcggc-cc--gcg--------------------------ccc---------cgggaa Rhesus c-----agca--ctcggc-cc--gcg--------------------------ccc---------cgggaa Marmoset c-----agca--ctctgt-cc--gcg---------------------------cc---------tgggaa Tarsier g-----ggca--ctcaat-gt--gag--------------------------cct---------ccggaa Bushbaby t-----ggca------------------------------------------------------------ Tree shrew ---------------aac-gg--gcg--------------------------ccc---------tcagga Malayan flying lemur c-----cgca--ctaagt-gc--gcg--------------------------ccc---------ccggga Pig c-----agca--ct--gt-gt--gca--------------------------tcc---------ccggga Cow c-----agtg--ctcagt-gt--gcg--------------------------tcc------gggcaggga Sheep c-----agtg--ctcaga-gt--gcg--------------------------tcc------gggcaggga Horse tccgggagtt--ttcagc-gt--c-acttcttcctctaggatcccgcgctctgtc---------ccttga Chinese pangolin c-----agca--ctcagt-gt--g-a--------------------------gtc---------ccggga Dog t-----atca--ctcagt-gt--g-a--------------------------tcc---------cagggg Hawaiian monk seal t-----agca--ctcagt-gt--gcg--------------------------gcc---------ccggga Hedgehog a-----attg--ctgatt-------a--------------------------ttc---------cctgga Shrew c-----agtg--ctga---------g--------------------------ttc--------------a Elephant c-----agca--cttgtg--t--ggc--------------------------ccc---------caggaa Tenrec c-----gggaagctttcg-ct--agc--------------------------ccc-----------gcct Pika ====================================================================== Zebrafish ====================================================================== X. tropicalis ====================================================================== Opossum ====================================================================== Chicken ====================================================================== Dolphin NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN Mouse a------------gtttcct---ca----cagg---------cccctt-cttggag Rat a------------gtttctg---catgcgctgt---------cccttt-cttggag GCF_003668045 a------------gattcag---ca----ctag---------cccctt-cttggag Beaver g------------ggttcag---ta----ctaa---------ctctttcccttgag Squirrel g------------gattcag---ca----ccag---------cccttccagctaag Guinea pig a------------g---------ta----ccag---------cctttcctgctgag Rabbit a------------gtttggg---ct----cctt---------ttgctc-ctaggga Human g------------gcttcag---ca----tcac---------cctcttctgctggg Chimp g------------gcttcag---ca----tcac---------cttcttctgctggg Bonobo g------------gcttcag---ca----tcac---------cttcttctgctggg Gorilla g------------gcttcag---ca----tcac---------cctcttctgcgggg Rhesus g------------gcttcag---cc----tcac---------cctcttctgctggg Marmoset g------------gcttcag---cg----tcac---------cctcttctgctggg Tarsier g------------g-tccgg---ca----tcag---------ccgcttctgctggg Bushbaby -------------gtttcag---tc----tcag---------cccctgctgttggg Tree shrew g------------ggttcaa---ca----tcag---------tgccttc-ccctgg Malayan flying lemur g------------ggttcag---ca----tctg---------ccgcttt-gctggg Pig g------------ggttctg---cc----ttag---------cccattctcctag- Cow ggtggcggggga-gagtctg---ca----tcag---------ccccttcatctag- Sheep ggtggggagggaggagcctg---ca----tcag---------ctccttcatctag- Horse a------------gcttcga---ct----c------------ctcttgcccccag- Chinese pangolin g------------agttcag---ca----ccag---------ccccttcctctag- Dog g------------ggttcag---ca----tcag---------ccccttgctctag- Hawaiian monk seal g------------ggttcag---ca----tcag---------caccttcctctag- Hedgehog g----------------------ct----ttggttcctagcctcagtttgttgag- Shrew g----------------------ca----atag---------ccactttctggag- Elephant g------------atttagg----a----ccgg---------tcccttccgttag- Tenrec g------------acctcggcagcg----ctgg---------tccttcctg----- Pika ======================================================== Zebrafish ======================================================== X. tropicalis ======================================================== Opossum ======================================================== Chicken ======================================================== Dolphin NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN Inserts between block 6 and 7 in window B D Pig 11bp B D Cow 14bp B D Sheep 14bp B D Horse 16bp B D Chinese pangolin 82bp B D Dog 12bp B D Hawaiian monk seal 14bp B D Hedgehog 33bp B D Shrew 17bp Alignment block 7 of 317 in window, 56740217 - 56740236, 20 bps B D Mouse -------------------a----tgacat--ggctct-cctctat B D Rat -------------------a----tgacat--ggtttt-cctctat GCF_003668045 -------------------g----tgaaat--gtctct-cctctgt Beaver ----------------------------------ccct-tctctgc B D Squirrel -------------------a----tccagc--tgccaa-tgtttgc B D Guinea pig -------------------a----tttgctcaggtcct-cacctgc B D Rabbit -------------------g----cgagct---------------- B D Human -------------------a----tcccgc--tgaccc-tgt---- B D Chimp -------------------a----tcctgc--tgaccc-tgt---- B D Bonobo -------------------a----tcccgc--tgaccc-tgt---- B D Gorilla -------------------a----tcccgc--tgaccc-tgt---- B D Rhesus -------------------a----tcccgc--tgacac-tgt---- B D Marmoset -------------------g----tctcac--tgacag-cgtctg- B D Tarsier -------------------a----ccccgc--tgcccc-agt---- B D Bushbaby -------------------a----tccctc--tgctgc-tgtctgt B D Tree shrew -------------------a----tcccgc--tgccccgcttttgc B D Malayan flying lemur -------------------atccctcccgc--agtccc-cgtctgc B D Pig ------------------------tct------------------- B D Cow -------------------g----tct------------------- B D Sheep -------------------c----tct------------------- B D Horse -------------------t----gct------------------- B D Dog -------------------g----tct------------------- B D Hawaiian monk seal -------------------a----tct------------------- B D Hedgehog -------------------c----tcc------------------- B D Shrew -------------------c----tat------------------- B D Elephant gtcaagccacttccgcctga----t--------------------- B D Tenrec -------cacttagtcgtga----c--------------------- B D Pika ============================================== B D Zebrafish ============================================== B D X. tropicalis ============================================== B D Opossum ============================================== B D Chicken ============================================== B D Chinese pangolin ============================================== B D Dolphin NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN Inserts between block 7 and 8 in window B D Pig 3bp B D Cow 3bp B D Sheep 3bp B D Horse 3bp B D Dog 3bp B D Hawaiian monk seal 3bp B D Hedgehog 5bp B D Shrew 89bp Alignment block 8 of 317 in window, 56740237 - 56740293, 57 bps B D Mouse tc--cagcatcttcgg-----tttata---------aggtctctaagcacc------g-----ggtggtc B D Rat tc--tagcatctttag-----ttccta---------aggtccctaagcagt------g-----agttgtc GCF_003668045 tc--ttgcatctccag-----ttcata---------aagtccttaatcaccgactttg-----gtttgtc Beaver tc--ctgcagcttcagcgcctttcttc-----------ttccttgagcgtg------g-----gcttgct B D Squirrel tt--ctgtgtttctgc-----tcctga-----------gtatgtaggcttc------c-----gcttccc B D Guinea pig tt--gtttggcttctg-----ttgttgtccgagtgtgagtcttctattacc------t-----gg-gata B D Rabbit -----cacaagtcaga-----ttcttt-------gcaggctcttgagaata------------------- B D Human ----ctgcagcttcgg-----cttctc--------ttgctcccagagcggggtcttcg-----gcttgcc B D Chimp ----ctgcagcttcgg-----cttctc--------ttgctcccagagcggggtcttcg-----gcttgcc B D Bonobo ----ctgcagcttcgg-----cttctc--------ttgctcccagagcggggtcttcg-----gcttgcc B D Gorilla ----ctgcagcttcgg-----cttctc--------ttgctcctagagcggggtcttcg-----gcttgcc B D Rhesus ----ctgcagcttcgg-----cttctt--------ttggtcccagatcgggggcttcg-----gcttgcc B D Marmoset -ccgctgcagctttgt-----cttctc--------ttgctcccagagcggggtcctct-----gcttgcg B D Tarsier ----ttgcccctgcgg-----c-------------tggctcccggagcgcaggcctctgatccgcttgct B D Bushbaby ccctctgcaggttc-c-----ttccta--------ttgctcccagagcgccggcct-g-----gctggcc B D Tree shrew tc--cagcagcggtgg-----ttcctc--------ttcctcccagggctcaggcctcg-----gcatgca B D Malayan flying lemur cc--ctgcagcttcgg-----ctcccc--------ttgctcccagaccgcgctcctgg-----gcttgcc B D Pig cc--ctgaagctttga-----cttctc--------ttcatcccggagcccccgcttca-----aattgcc B D Cow cc--ctgaagcttcga-----ctcctc--------tagcccccggagccccggcctca-----ggttgc- B D Sheep cc--ctgaagcttcga-----ctcctc--------ttgccccc-gagccccggcgtca-----ggttgc- B D Horse cc--tag-----------------tta--------atgtccccaaacat----ccaag-----actcttc B D Dog cc--ctgaagtatcaa-----ctcctt--------ttgccacagaatctcgggcctca-----gtttacc B D Hawaiian monk seal cc--ctgaagcttcga-----ctcttt--------ttgccgcccaagctcgggcctca-----gtttgcc B D Hedgehog -t--ttgcagggtggg-----atgggg--------tgggtgggaa------------------------- B D Elephant ct--ctgcagctttgg-----cccatc--------ctcctcccagagtcctgtcaagg------------ B D Tenrec ac--gggta--cttgg-----tgcctc--------aaagcaccagagat---tcaggg------------ B D Pika ====================================================================== B D Zebrafish ====================================================================== B D X. tropicalis ====================================================================== B D Opossum ====================================================================== B D Chicken ====================================================================== B D Shrew ====================================================================== B D Chinese pangolin ====================================================================== B D Dolphin NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN Mouse atggg-cgctgaaag Rat atgag-tgctga--g GCF_003668045 atggg-tgctga--g Beaver gcgga-tgctta--g Squirrel tggga-tgctta--g Guinea pig acagg-taatta--a Rabbit ------tgttaa--- Human gcgga-tactta--g Chimp gcgga-tactta--g Bonobo gcgga-tactta--g Gorilla gcgga-tactta--g Rhesus gcgga-tactta--g Marmoset gtgga-tactta--g Tarsier gcgga-gactta--g Bushbaby gcgta-tactta--g Tree shrew gcagg-tactta--g Malayan flying lemur gcgga-tactta--- Pig gccccatgctta--g Cow ------cgctga--g Sheep ------cgctga--g Horse gcgcg-ctcctg--g Dog acgag-ttctta--g Hawaiian monk seal gcggg-ttctta--g Hedgehog --------------- Elephant --------------- Tenrec --------------- Pika =============== Zebrafish =============== X. tropicalis =============== Opossum =============== Chicken =============== Shrew =============== Chinese pangolin =============== Dolphin NNNNNNNNNNNNNNN Inserts between block 8 and 9 in window B D Pig 17bp B D Cow 6bp B D Sheep 6bp B D Horse 11bp Alignment block 9 of 317 in window, 56740294 - 56740300, 7 bps B D Mouse tggccca B D Rat tggtcca GCF_003668045 tggccca Beaver tggccca B D Squirrel tggccca B D Guinea pig cagccca B D Rabbit --gccaa B D Human tggccca B D Chimp tggccca B D Bonobo tggccca B D Gorilla tggccca B D Rhesus tggccca B D Marmoset tggccca B D Tarsier tggtcca B D Bushbaby ttgtcca B D Tree shrew cggtcca B D Malayan flying lemur cagaccc B D Pig tgagctg B D Cow tgctccc B D Sheep tgctccg B D Chinese pangolin tgtccca B D Dog tgtcccc B D Hawaiian monk seal tgtcccc B D Hedgehog tatct-- B D Elephant tgcccca B D Tenrec cacattc B D Horse ======= B D Pika ======= B D Zebrafish ======= B D X. tropicalis ======= B D Opossum ======= B D Chicken ======= B D Shrew ======= B D Dolphin NNNNNNN Alignment block 10 of 317 in window, 56740301 - 56740398, 98 bps B D Mouse aagtgc-ccaag-----------gttgatttattctgggcct----ccaa--gaatattc---------- B D Rat aattgc-ccaag-----------gttgattcattctgtgcac----ccaa--gaatattc---------- GCF_003668045 aaacat-ccaag-----------attgattcattctgtgctt----cccc--gga-atgc---------- Beaver aaacgcttctag-----------attgattcttccagggctc----ttaa--gaatgcactgagccaaga B D Squirrel cagcgt-caaag-----------aatgactctttgcgcgctt----tgagctgatagcgc---------- B D Guinea pig gaatgc-ctacg-----------actgattcttttcttgctc----tgga--ggatgtac---------- B D Rabbit gagcgc-ccagc-----------atc-----------cgcaa----cagc--gcgtgtgg---------- B D Human aaacac-ctaaa-----------attgactcttcctgcgctc----ttga--gaat-------gccaaga B D Chimp aaacac-ctaaa-----------attgactcttcctgcgctc----ttga--gaat-------gccaaga B D Bonobo aaacac-ctaaa-----------attgactcttcctgcgctc----ttga--gaat-------gccaaga B D Gorilla aaacac-ctaaa-----------attgactcttcctgcgctc----ttga--gaat-------gccaaga B D Rhesus aagcac-ctaaa-----------attgactcttcctgcgctc----ttga--gaat-------gccaaga B D Marmoset aagcac-ctaaa-----------atgggttctttctgcgctc----ttga--caat-------gttaaga B D Tarsier aagcac-ctaca-----------atggattcttcgcgcgctc----tgga--caatgtcgcgagccagga B D Bushbaby aagtgc-ctaaa-----------attgattcttcacacgctc----ttga--gaatgccttgagccgaga B D Tree shrew aagcac-ccaaa-----------ggtgatccttcgagcgtta----ttga--caatgtgctaagtcaaga B D Malayan flying lemur aaacac-ctaaa-----------attgattcttcgcgcgctc----cgga--gaatgcactgagccaaga B D Pig ---------ggc-----------tgagag----------------------------------------- B D Cow ---------gaa-----------caagatccttctctcgctc----tcgg--gaatgcgctgagctgaga B D Sheep ---------gaa-----------caagatcct--tctcgctc----tcgg--gaatgcgctgagctgaga B D Horse ---------------------------------------------------------------gccgaga B D Chinese pangolin ---------aaacacc-------gaagattcttcgtttgctc----ttgg--gaacgcggtgagatgaga B D Dog ---------aagcaccgg----tgatgattcttcgccggctc----ttcg--gattgcgctgagctgaga B D Hawaiian monk seal ---------aagcacc-------gacgattcttcgtgggctg----ctgg--gaatgcgctgagctgaga B D Hedgehog ----------------------------------gagtgccc-------------tgaactccctctata B D Shrew ----------------------------------gaatgctctagtttgg--ttttgagccttcctcata B D Elephant ----------------agacaccgataattccgcgcacattc----tcga--gaattggcagagcaagag B D Tenrec ----------------tg-----gagaat---ggactgatcc----taga--gcgctaaca---cctgcc B D Pika ====================================================================== B D Zebrafish ====================================================================== B D X. tropicalis ====================================================================== B D Opossum ====================================================================== B D Chicken ====================================================================== B D Dolphin NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN Mouse -------------------------------------tggtaggagagcctgagggaca--c--tg---- Rat -------------------------------------cggtaggtgggtctgagggatg--c--cg---- GCF_003668045 -------------------------------------tgttaggagggcctgagggatg--c--tg---- Beaver ------------gggctcagtacccacaatcaca-ggtgtgaagtaagcccgaggggcgtct--ta---- Squirrel ----------------ttagcaccctgcaccgcc-cgcaagaggtaggcctgctgagct--c--cg---- Guinea pig ------------------------cctgaccaat-aggttaagttggatctgcaggaca--c--cg---- Rabbit -------------------------------------------------------------t--tg---- Human ------------gcacccagtacctgcaaccgcc-ggcatgagtggggcctgcggggag--c--cgccag Chimp ------------gcacccagtacctgcaaccgcc-ggcatgagtggggcctgcggggag--c--cgccag Bonobo ------------gcacccagtacctgcaaccgcc-ggcatgagtggggcctgcggggag--c--cgccag Gorilla ------------gcacccagtacctgcaaccgcc-ggcatgagtggggcctgcggggag--c--cgccag Rhesus ------------ccacccagtacctgcaaccgcc-ggcatgagtggggccttaggggag--c--cgccgg Marmoset ------------gcacccagtacctgcaaccgac-ggtatgagtggggtctgcggggag--c--ggccgg Tarsier ------------gcatccggcaccaggaaccgcc-agcgggagtggggcctgaggggcg--c--cgctgg Bushbaby ------------gcacccagcacctgcaactacctggagtgagctgggcccgcgaggct--t--cgcagg Tree shrew ------------gagc-cagcacctgtctgcgtg-aggaagggcctgccctgccgggcg--c--cg--ag Malayan flying lemur ------------gagc---------------------------tcagctccctcaaccg--c--cg---- Pig -----------------------------------tgc--------------tgaacat--c--tg---- Cow ------------g----------------------tgc--------------cgaagac--c--cg---- Sheep ------------g----------------------tgc--------------cgaagat--c--cg---- Horse ------------gcgc-------------------cg-----------------agcgc--c--cg---- Chinese pangolin ------------gagc-------------------ag-----------------aacat--c--cg---- Dog ------------g----------------------cac--------------cgaacac--c--ca---- Hawaiian monk seal ------------g----------------------cac--------------cgaacac--c--cg---- Hedgehog ------------gctc-------------------tga--------------tgagcag--cagcg---- Shrew cctactcacctcactc-------------------tg---------------tgagccg--c--cg---- Elephant ------------t----gagagcacccacgcgcc-cgcatgaggggg-cctgccggaag--t--tg---- Tenrec ------------t-----------cccccccccc-ccccagaaggg-----actgggtc--c--tg---- Pika ====================================================================== Zebrafish ====================================================================== X. tropicalis ====================================================================== Opossum ====================================================================== Chicken ====================================================================== Dolphin NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN Mouse -----a-g--ga--ga-----------cccag-----taaaatgctg---tccgcgcatg Rat -----a-g--ga--aaggatc--tatacccag-----taaaatactg---tccaagcatg GCF_003668045 -----a-g--gt--gaggacc--tatgcccag-----tgagatgctg---cctg-gcatg Beaver -----a-g--gc--ggggacc--tatgctttg-----tgagatgctg---cctgagcgtg Squirrel -----c-accgc--gggaaccgatgtgctccg-----tgagaagctg---tctaagcgtg Guinea pig -----a-a--at--gatggcatttctgtccag-----tgcgatgctg---cctgagtgag Rabbit -----g-t--gc--agggcct--tctgcccag-----cgagaggctg---cttccgcaca Human agctgc-g--ga--caggccc--cctgcccac-----tgagttgcta--cccctggcacg Chimp agctgc-g--ga--caggccc--cctgtccac-----tgagttgcta--cccctggcacg Bonobo agctgc-g--ga--caggccc--cctgtccac-----tgagttgcta--cccctggcacg Gorilla agccgc-g--ga--caggccc--cctgcccac-----tgagttgcta--cccctggcacg Rhesus cgccac-g--ga--caggccc--tctgcccag-----tgagttgcta--cccctggcgcg Marmoset cgccgc-g--ga-tcaggccc--cctgcccac-----tgagatgcta--cccctgatgcg Tarsier -gacgc-g--aagtaggaacc--tcagctcgg-----gtggacgctg--cccctggcgct Bushbaby ggcccc-g--gagcagggcac--ctcgcccag-----tgagactctg---ccttagcgcc Tree shrew gagcgc-a--gggcagggacc--tctcctcag-----caagacgctg---cctgcgcgtg Malayan flying lemur -------------------------------g-----ctggactctg---ccttggtgcg Pig -----c-a--tc-------gg--ccagcatac-----tgagtgcttg----ctgggctca Cow -----c-a--ct-------cg--ccagcgt-t-----agagggcctg----ttgggccga Sheep -----c-t--ct-------cg--ccagcgt-t-----agagggcctg----ttgggccga Horse -----c-g--cc-------tg--cctgcgtga-----cgagggcctg----ccgcgctcc Chinese pangolin -----c-g--ca-------ca--ccggcgtga----ttgagggcctg----ctgggatcc Dog -----c-a--cc-------cg--ccggcgtga-----tgagggcctg----cggggcttc Hawaiian monk seal -----caa--cc-------cg--cgggcgtga-----tgaccgcctg----cggggctcc Hedgehog -----g-g--gc-------tc--tgagccaca-------------------cagagcagc Shrew -----g-g--ac-------tc--tggggttgaggggcagggagctggggttcacagcagc Elephant -----c-c--cc-------gg--ggcgcctag-----agagtccgcg---gcgg------ Tenrec -----c-t--tt-------tg--agggcccaa-----cagggccacg---accg------ Pika ============================================================ Zebrafish ============================================================ X. tropicalis ============================================================ Opossum ============================================================ Chicken ============================================================ Dolphin NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN Inserts between block 10 and 11 in window B D Pig 30bp B D Cow 284bp B D Sheep 35bp B D Horse 40bp B D Chinese pangolin 22bp B D Dog 37bp B D Hawaiian monk seal 37bp B D Hedgehog 25bp B D Shrew 23bp Alignment block 11 of 317 in window, 56740399 - 56740402, 4 bps B D Mouse ccca B D Rat ccaa GCF_003668045 ccca Beaver cctg B D Squirrel ccta B D Guinea pig cccc B D Rabbit tgca B D Human ccca B D Chimp ccca B D Bonobo ccca B D Gorilla ccca B D Rhesus ccca B D Marmoset ccca B D Tarsier cctg B D Bushbaby ctca B D Tree shrew ccca B D Malayan flying lemur ccca B D Pig -cta B D Sheep acca B D Horse --cg B D Chinese pangolin --ca B D Dog --cg B D Hawaiian monk seal --cg B D Hedgehog -tca B D Shrew -cca B D Elephant -ct- B D Tenrec -ct- B D Pika ==== B D Zebrafish ==== B D X. tropicalis ==== B D Cow ==== B D Opossum ==== B D Chicken ==== B D Dolphin NNNN Inserts between block 11 and 12 in window B D Pig 1bp B D Sheep 241bp B D Horse 2bp B D Chinese pangolin 2bp B D Dog 2bp B D Hawaiian monk seal 2bp Alignment block 12 of 317 in window, 56740403 - 56740454, 52 bps B D Mouse ggg-------------------------aga---t-c--accaaca---gccaggtccaacagatagaaa B D Rat ggg-------------------------aga---t-c--accaaca---gc--------------agcca GCF_003668045 agg-cagttacaacagctaagacta--aaag---c-c--accaact---gccagattcagc----agata Beaver gat-tgttcacagcagctaaggcca--cacg---c-g--accaaca---gccaagtccagc----aggtg B D Squirrel agggagttcgcggtaactgaggcta--catgtgct-c--agctata---gccaactccagc--------- B D Guinea pig agc-----------agttaaggccagccatg---tgt--ggcgaca---gc-aagtccagc----aggtg B D Rabbit ggg-ggcgtgcagcagttaaggccg--cagg---t-g--gcc-aca---gtcaggtccagc----aggtg B D Human ggg-gatccgcagcagctgaggc----caca---t-g--gtc-aca---gccaagttcagc----aggtg B D Chimp ggg-gatccgcagcagctgaggc----caca---t-g--gtc-aca---gccaagttcagc----aggtg B D Bonobo ggg-gatccgcagcagctgaggc----caca---t-g--gtc-aca---gccaagttcagc----aggtg B D Gorilla ggg-gatccgcagcagctgaggc----caca---t-g--gtc-aca---gccaagttcagc----aggtg B D Rhesus ggg-gatccgcagcagctaaggc----caca---t-g--gtc-aca---gccaagtccagc----aggtg B D Marmoset ggg-agtccgcagcatctaaggc----caca---t-g--gtc-aca---gccaagtccaga----agatg B D Tarsier ggg-gttctgcagcagctagggc----caga---c-a--gcc-gca---gacaagtccagc----aggtg B D Bushbaby gcg-gcttcgcagcagctaaggc----caaa---g-g--gcc-gca---gccacaaccagc----aggtg B D Tree shrew gcc-ggcgggcagcaggtaagga----tacg---c-gcagcc-aca---aacaagtccagc----agctg B D Malayan flying lemur ggg-ggtccgcagcagttaaggg----cacg---c-g--gcc-aca---gccacgtccagc----aggtg B D Pig ---------------------------------------gac-cgc---acgaacgaccac----aggtg B D Horse ---------------------------------------gcc-acc---gccaagtccagc----aggtg B D Chinese pangolin ---------------------------------------gca-aag---gccaagttcagc----aggtg B D Dog ---------------------------------------gac-agg---gccaagtccaac----aggtg B D Hawaiian monk seal ---------------------------------------gcc-gcg---gccaagtccaac----aggtg B D Hedgehog --------------------------------------------tg---accaagtccagc----aggtg B D Shrew --------------------------------------------aggcagccaagggcagc----aggtg B D Elephant ------------------gaggtca--cacg---c-g--gtc-aca---ggcaagtccagc----aggtg B D Tenrec ------------------gaggtca--ccca---a-g--acc-aca---gccaaggtcagc----agttg B D Sheep ====================================================================== B D Pika ====================================================================== B D Zebrafish ====================================================================== B D X. tropicalis ====================================================================== B D Cow ====================================================================== B D Opossum ====================================================================== B D Chicken ====================================================================== B D Dolphin NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN Mouse gaa---------aaaaaaaaaaccg--- Rat gaa---------aa---------cc--- GCF_003668045 gaa---------ac---------ct--- Beaver gaa---------ac---------cg--- Squirrel -----------------------ag--- Guinea pig gaa---------ta---------gg--- Rabbit gat---------a----------ga--- Human gaa---------ag---------gg--- Chimp gaa---------ag---------gg--- Bonobo gaa---------ag---------gg--- Gorilla gaa---------ag---------gg--- Rhesus gaa---------ag---------gg--- Marmoset gaa---------ag---------gg--- Tarsier gaa---------ac---------gg--- Bushbaby gaa---------ac---------gg--- Tree shrew aga---------ac---------cg--- Malayan flying lemur gga---------at---------gg--- Pig gaaa------------------------ Horse gaa------------------------- Chinese pangolin gaa------------------------- Dog gaa------------------------- Hawaiian monk seal gaa------------------------- Hedgehog caa-aaggagtg---------------- Shrew gga-aggcagag---------------- Elephant gaa---------ac---------cggga Tenrec gag---------at---------aagaa Sheep ============================ Pika ============================ Zebrafish ============================ X. tropicalis ============================ Cow ============================ Opossum ============================ Chicken ============================ Dolphin NNNNNNNNNNNNNNNNNNNNNNNNNNNN Inserts between block 12 and 13 in window B D Pig 3bp B D Horse 4bp B D Chinese pangolin 4bp B D Dog 4bp B D Hawaiian monk seal 4bp B D Hedgehog 4bp B D Shrew 2bp Alignment block 13 of 317 in window, 56740455 - 56740469, 15 bps B D Mouse atagatgaccaacag B D Rat ataaatgtcca---- GCF_003668045 atagatgtctg---- Beaver agagatggcag---- B D Squirrel gtggatggcag---- B D Guinea pig agagatgggaa---- B D Rabbit aaagatggcgg---- B D Human agagatggcat---- B D Chimp agagatggcat---- B D Bonobo agagatggcat---- B D Gorilla agagatggcat---- B D Rhesus agagatggcat---- B D Marmoset agagatggcat---- B D Tarsier agagatggcat---- B D Bushbaby agagatggcat---- B D Tree shrew agagatggcat---- B D Malayan flying lemur agagatggcag---- B D Pig agaggcagcag---- B D Dolphin agaggcatcag---- B D Horse agagacagcag---- B D Chinese pangolin agagctagcag---- B D Dog cgagatagtag---- B D Hawaiian monk seal agagatagtag---- B D Hedgehog ctg------------ B D Sheep =============== B D Tenrec --------------- B D Pika =============== B D Zebrafish =============== B D X. tropicalis =============== B D Cow =============== B D Opossum =============== B D Chicken =============== B D Shrew =============== B D Elephant --------------- Alignment block 14 of 317 in window, 56740470 - 56740577, 108 bps B D Mouse tagacctgtgcaagagca---agggaggtgt---gcgacagc-taaagg-ggg-c-ggcag-tagat--- B D Rat tagagctgtgcaagactg---agggagatgt---gtgacagc-taaagg-ggg-a-ggcag-tggat--- GCF_003668045 tggaa-tgcgcaatggtg---agggacacaa---gtgtccgc-caaa-g-gag-t-agcag-tgata--- Beaver cggacgtgcgccag---g---agagagaagt---ttggcagc-agaagg-a------------------- B D Squirrel cggacctgcgcgtgagcc---agtgagatgc---gtggctgc-tgaagg-aga-t-aaccg-agagaa-- B D Guinea pig tgaacctgtgctacagc----acagagatgt---gtggcagc-taaaga-ggt-c-agaga-agaca--- B D Rabbit tgaacctgtgtgagaggg---tgggagtcgtctggtggtagc-cgaagg-agt-t-ggctg-cggcaaac B D Human tgaacctatgtgagaact---gggaagatgt---gtggcagc-tgaagg-agt-t-ggtag-gaaca--- B D Chimp tgaacctatgtgagaact---ggggagatgt---gtggtagc-tgaagg-agt-t-ggtag-gaaca--- B D Bonobo tgaacctatgtgagaact---ggggagatgt---gtggcagc-tgaagg-agt-t-ggtag-gaaca--- B D Gorilla tgaacctatgtgagaact---ggggagatgt---gtggcagc-tgaagg-agt-t-ggtag-gaaca--- B D Rhesus tgaacctatatgagaact---ggggagatgt---gtgacagc-tgaagg-agt-t-ggtag-gaaca--- B D Marmoset tgaatctgtgtgagaact---ggggagatgt---gtggcaga-caaagg-agt-t-ggtgg-gaaca--- B D Tarsier ccgacctgtgcgagagag---tgggagatgt---gaggccgc-tggagg-agt-t-ggcagcgaaca--- B D Bushbaby ccgatctgtgtgagaacg---cggaacatgt---gggacagcttgaagg-aat-c-ggtggagaaca--- B D Tree shrew cggacctgcgctagagcg---cgggagatgt---gcggcagc-tgaa-----t-t-agtagcaaacg--- B D Malayan flying lemur cagacctgtgcgaaagcg---cgggagatgt---gtggcagc-tgaagg-agt-c-ggcggagaacg--- B D Pig tggatctgttcctgccccgtgtgagaaatgt---gaggcagc-tgaagg-a------------------- B D Dolphin caagcctgtg-----------cggggagtat---gaggcaac-tgaggg-agt-t-gggggtgaacg--- B D Cow caaatcggttgaagagtc--cggggaaatat---gaggaaac-tgaggg-att-t-gggggcgaacg--- B D Sheep caaaccggttggagagtc--cggggaaatat---gaggaaac-tgaggg-att-t-gggggcgaacg--- B D Horse cggacctgctcgagagcg---cgagagatgt---gaggcagc-tgaagg-ag--t-gggggcgaagg--- B D Chinese pangolin cggacctctttgaaaccg---tgggagatag---gggtcaga-ggaagg-agc-t-gggagcgaaag--- B D Dog cagacctgtttgagagca---cggg-catgt---caggcagc-tgacag-agctt-agaggcaaacg--- B D Hawaiian monk seal cagacctgttggagagca---cgggacaagt---caggcagc-tgaagg-agttt-agaggcaaacg--- B D Hedgehog --tgccttgtgcagcaat---gtggaggtgt---agggcccc-tgaaactagc-t-gaaggcgaacg--- B D Shrew -----------cagcaag---ggagaatgag---gcagccca-caa----agc-t-ggtggcgaa----- B D Elephant --gatggtagcggacccg---tgagagatgt------gcagc-tgaagg-agt-a-gggggcaaacg--- B D Tenrec -tgaccagtgcgagggcg---cgggagatct---cc-gcagc-tgaggc-agt-ctaggtgtgaagg--- B D Pika ====================================================================== B D Zebrafish ====================================================================== B D X. tropicalis ====================================================================== B D Opossum ====================================================================== B D Chicken ====================================================================== Mouse --------gttatgtactaaacc--ccaaa------------ctag-acac--acaggtc-tcttgatca Rat -agtggatgtcgtgtactaatcc--cccaagc---tagaatgctag-acat--atgggtc-tcttgatca GCF_003668045 -agaggatgctgtgtgtttagtc--accaagc---cagaccaccag-acac--agagatc-tctagatca Beaver --------gttaactgctag----------------------tgaa-gtcc--acatagc-tatggatca Squirrel -agaggatgttgtatgttaagtccacctagcc---caagcgctgaa-ccat--atggatc-tctggatca Guinea pig -agaggatgctgtgtgttagctt-------------gagcgctgaa-ccat--atggggc-actggagca Rabbit gagagggagtcgggtgttgcgtccacaccacc---cagagctctaa-acac--gtgcatc-tctggatca Human -agagggagttgtatgttacctccatataacc---agagctctaaa-ccat--atcagtt-tctgaacca Chimp -agagggagttgtatgttacctccatataacc---agagctctaaa-ccat--atcagtt-tctgaacca Bonobo -agagggagttgtatgttacctccatataacc---agagctctaaa-ccat--atcagtt-tctgaacca Gorilla -agagggagttgtatgttacctccatataacc---agagctctaaa-ccat--atcagtt-tctgaacca Rhesus -agagggagctgtatgttacctccatataacc---agagctctaaa-ccat--gtcagtt-tctgaacca Marmoset -agagggggttgtatgttacctccaaatggcc---agagctctaaa-cagt--aaccttt-t-------a Tarsier -agagagagttgtgtgtcgcgttcacatggcc---acaactctaaa-ccat--gcagttc-tctggatca Bushbaby -agggggaattgcgcgttaagcttgcatagcc---agagctctaaa-ctgt--acgggtc-tcagaattg Tree shrew -agtgggagttgcgtacca---ccgcaccgcc---ggagcgctaaa-ccat--atgggtc-tccgggtca Malayan flying lemur -aaaggggattgttttttaagtctacgtagcc---ggagctctaaa-c--t--aaggctcttctggatca Pig ---------------gttaggtccacctagcc---agagctctaaa-caat--agaagtc-tctggatca Dolphin -agagggaggtgcgtgttaggtcctcctggcc---agagctccaaa-caat--atgagtc-tctggatca Cow -agaaggtgttgtgtgttaggtcctcctagcc---agagcaaaaaaccaat--acgag-t-tctggatca Sheep -agagggtgttgtgtgttaggtcctcctagcc---agagcgccaaa-caat--gcgagtt-tctggatca Horse -agagggagttgtgtgttagat--------------aggtcctaaa-gaat--gcgagtc-tctggacca Chinese pangolin -acagggagttgtatattatgtccacctagcc---aaaactttaaa-catt--acgagtc-tctggatca Dog -agagggatttgtgttttaggtccacctagcc---ggagctctaaa-caat--gcgagtc-tctggatca Hawaiian monk seal -agagggatttgtg-tttaggtccacctagcc---ggagctctaaa-cagtgggcgagtc-tttggatcg Hedgehog -ggagggagttggctgtgagtt---------------agacacatt-caac--cagag-c-tctgggtca Shrew -----------------gtgtt---------------gacaaccaa-caat--ccgagtc-tctaggtca Elephant -ataaggagttgcgggttaggtc-acttggcc---agagctctaag-tctt--acaagtc-ttaagatcg Tenrec -aca--gagttgcgagttaggtc-acttgatcgtgggagctccaaa-tcat--tcaagtc-tgaggagca Pika ====================================================================== Zebrafish ====================================================================== X. tropicalis ====================================================================== Opossum ====================================================================== Chicken ====================================================================== Mouse c----tccgggt Rat c----tc-gggt GCF_003668045 c----tctgggt Beaver c----cctgggc Squirrel t----tcccagc Guinea pig c----tcctgac Rabbit c----tacgggc Human g----tctaggc Chimp g----tctaggc Bonobo g----tctaggc Gorilla g----tctaggc Rhesus g----tctaggc Marmoset c----cctaggc Tarsier gggcctctggac Bushbaby c----tctgggc Tree shrew c----tccggcc Malayan flying lemur c----tccgggc Pig c----ttcaggc Dolphin c----tccaggc Cow c----tccaggc Sheep c----gcca-gc Horse c----tccgggc Chinese pangolin c----ttcgggc Dog c----tccgggt Hawaiian monk seal c----tccggct Hedgehog c----tctgggc Shrew c----tctggct Elephant c----tgtgggc Tenrec a----tctgggc Pika ============ Zebrafish ============ X. tropicalis ============ Opossum ============ Chicken ============ Inserts between block 14 and 15 in window B D Tarsier 9bp B D Shrew 233bp Alignment block 15 of 317 in window, 56740578 - 56740579, 2 bps B D Mouse -t------g B D Rat -t------g GCF_003668045 -t------a Beaver -t------g B D Squirrel -t------g B D Guinea pig -t------a B D Rabbit -t------g B D Human -t------g B D Chimp -t------g B D Bonobo -t------g B D Gorilla -t------g B D Rhesus -t------g B D Marmoset -t------g B D Tarsier -t------g B D Bushbaby -t------g B D Tree shrew -t------g B D Malayan flying lemur -t------g B D Pig -t------g B D Dolphin -t------g B D Cow -t------g B D Sheep -t------g B D Horse -t------g B D Chinese pangolin -t------g B D Dog -tctacact B D Hawaiian monk seal -t------g B D Hedgehog -t------g B D Elephant tt------- B D Tenrec ct------- B D Pika ========= B D Zebrafish ========= B D X. tropicalis ========= B D Opossum ========= B D Chicken ========= B D Shrew ========= Inserts between block 15 and 16 in window B D Hedgehog 443bp Alignment block 16 of 317 in window, 56740580 - 56740758, 179 bps B D Mouse atg----tagctag---at-----------tct--------------------cattaggacacca---- B D Rat atg----gagctaa---at-----------tcc--------------------cattaggacacca---- GCF_003668045 atgaagttagttag---at-----------tct--------------------cattaggacacta---- Beaver gtg----ctgttag---ac-----------cct--------------------cagcaggacacca---- B D Squirrel gtg----gtgttag---ac-----------cct--------------------caacggggcatca---- B D Guinea pig gtc------gttag---ac-----------ctt--------------------tcg-aggaaaatg---- B D Rabbit gtg----ctgccga---ac-----------tgc--------------------ttaaagcgcttcg---- B D Human gtg----ctgcaga---actgctaaagc--tctcgcagagt-ccccagaccccccgcgggacatga---- B D Chimp gtg----ctgcaga---actgctaaagc--tctcgcagagt-ccccagaccccccgcgggacatga---- B D Bonobo gtg----ctgcaga---actgctaaagc--tctcgcagagt-ccccagaccccccgcgggacatga---- B D Gorilla gtg----ctgcaga---actgctaaagc--tctcgcagagt-ccccagaccccccgcgggacatga---- B D Rhesus gtg----ctgtaga---actgctaaagc--tctggcaaagt-ctccaga-accccgcgggacatta---- B D Marmoset gtg----ctgtaga---actgctaaagc--tttcgaagagt-ccccagacaccccgcggggcatta---- B D Tarsier gtg----ctataga---actgctgaagt--tctcgcagagt-gcccagacccacaccggggaatca---- B D Bushbaby gtg----ctgtagagctgctgctaaagc--tct--cagaat-ccccagagcccctgaggggcattt---- B D Tree shrew gga----ctgcaga---actggttaagcgttctcacataat-ccccagacccccagcggggaatgg---- B D Malayan flying lemur gtg----ctataga---gctggtaaagc--tctcccagagc-caccagccccccagcgaggtattg---- B D Pig gta----ctgtaaa---actgctagagc--cttcacagagc-acacagacccacagtgatgcactg---- B D Dolphin gtg----ctg--------gtgctaaagc--cctcacagagc-acatagaaacacatcacggcactg---- B D Cow gtg----ctgcaga---actgctaaagc--cctcacagagctgtgaagaagcaccccgaggcactg---- B D Sheep gtg----ctgcaga---actcttaaagc--c---------ctgtaaagaagaacactgcggcactg---- B D Horse gta----ctgtaga---a-ccctaaagc--cctcacagagc-gc--agacacacacggtggcactg---- B D Chinese pangolin gtg----ctgtaga---a--gttacagc--cctcacagagc-g----------catcgggacaccg---- B D Dog ccg----ctgtaga---accactaaaac--cctcatacggc-gcaaagacccacatcc-ggcactg---- B D Hawaiian monk seal gtg----ctgtaga---accactaaaac--cctcatagagc-gcatagacccacatccgggcaccg---- B D Elephant gtg----ttgtagg---accgctaaagc--cctcaaagagc-ttccagcccctcagcagtgcacagaggc B D Tenrec gtg----ttgtagg---accgcagaagt--ccgcaaagtgc-tg-------ttctgcattgtgccgcgtt B D Hedgehog ====================================================================== B D Pika ====================================================================== B D Zebrafish ====================================================================== B D X. tropicalis ====================================================================== B D Opossum ====================================================================== B D Chicken ====================================================================== B D Shrew ====================================================================== Mouse -catctt-gctagtcca--------cacgggctgg-------ggcac-------tatctctg---tacac Rat -catctt-gccagtcca--------caacggctga-------ctcgc-------tgtctctg---catac GCF_003668045 --------gctaggccatggcactccacagtctgga------cacat-------tgtccctacatcatac Beaver -ggtctt-gccaatccg--------aa------gg------------------------ctg---cagag Squirrel -ggtctt-gccaacctg--------ta--ggctgaa-----gaaccc-------tgtaacgg---tatag Guinea pig -gatctt-gccaacctt--------ta--gacttaatgaccttgtcc-------tgtactcg---catag Rabbit -atcccc-taggctcag--------aacggtctgg---------------------tacccg---catcg Human -ggtctt-gcctgttcg--------ta--tgc-gaac-----atcct-------tgtacccg---cctag Chimp -ggtctt-gcctgttcg--------ta--tgc-gaac-----atcct-------tgtacccg---cctag Bonobo -ggtctt-gcctgttcg--------ta--tgc-gaac-----atcct-------tgtacccg---cctag Gorilla -gatctt-gcctgttcg--------ta--tgc-gaac-----atcct-------tgtacccg---cctag Rhesus -ggtctt-gcctgttgg--------ca--tgc-gaac-----atcct-------tgtaccag---cctag Marmoset -ggtttt-gcatgttgg--------ta--ggc-gaat-----atcct-------cgtatccg---cctag Tarsier -ggtctc-gccagacga--------ta--agcggaat-----ggcct-------cgcacctg---cgcat Bushbaby -cgtctt-accagcccg--------ta--ggctgaac-----cgcat-------tgtaccca---tatag Tree shrew -ggtctt-gtcagccag--------ta--ggcagaac-----gacct-------cgtatttg---cattg Malayan flying lemur -ggtcta-gccagcagg--------ta--gcctgaac-----ggcct-------tgtacccg---cagag Pig -ggtctt-accagtcag--------aa--agt-gaaa-----aacct-------tttagtaa---catcg Dolphin -ggtctt-gccagtcag--------aa--ggc-gaag-----agcct-------tttatcaa---cttcg Cow -gatcttggccagttag--------aa--ggc-gatc-----ggcct-------tttatcaa---catta Sheep -gatcttggccaattag--------aa--ggc-gatc-----ggccttctaatgtttatcga---catta Horse -ggtctt-gccagcgcg--------ga--gggagaac-----agcct-------tttaccga---catcg Chinese pangolin -ggtctt-atcagcccc--------aa--ggcggaac-----agcct-------tttaccga---catcg Dog -ggtcct-gccagccag--------aa--ggtggaac-----agccc-------tttaccga---cactg Hawaiian monk seal -ggtctt-gccagccag--------aa--ggtagaac-----cgccc-------tttacgga---cactg Elephant ttgcctt-gccagcctg--------aa--tgc-agac-----agctt-------tttagcgg---catcg Tenrec tggcctt-gccagccca--------aa--ggc-gaac-----agcctgc-----ttgcgcgg---catca Hedgehog ====================================================================== Pika ====================================================================== Zebrafish ====================================================================== X. tropicalis ====================================================================== Opossum ====================================================================== Chicken ====================================================================== Shrew ====================================================================== Mouse cagtt---------cagaagg--gtgt--g-aaatactcagtgggtg-----cacggaagtagag-caaa Rat cagtc---------gagaagg--gtgt--g-aaatattcagtaggtg-----caccgaagtagag-cgaa GCF_003668045 aactt---------caaaaga--gtgt--g-aaataattaatgggtg-----cactgaagttggg-caaa Beaver cagcc---------tagaaat--gtgg--g-aaacgctcactgggcg-----cactgaagtcggg-caaa Squirrel cggcc---------ccaaaga--gtga--gaaaacgctcactgggtg-----cgctgaagtgggg-caat Guinea pig cagtcat-------cccaaag--gcac--a-aatcactcattggg-------------------g-taaa Rabbit cagcc---------caaaaga--atga--g-aaacactcactgggcg-----cacgggggtggga-cgag Human cagcc---------ctgcaga--ctgc----aaattttccctgggtg-----cacggaagtagag-c--a Chimp cagcc---------ctgcaga--ctgc----agattttccctgggtg-----cacggaagtagag-c--a Bonobo cagcc---------ctgcaga--ctgc----agattttccctgggtg-----cacggaagtagag-c--a Gorilla cagcc---------ctgcaga--ctgc----aaattttccctgggtg-----cacggaagtagag-c--a Rhesus cagcc---------ctgcaga--ctgc----aaattctccctaggtg-----cacggaagtagag-c--a Marmoset cagcc---------ctgccga--ctga----gaattctccctgggtg-----cacggaggtagat-c--a Tarsier cagcc---------c-gcagactctgc----ggactctccccgggcg-----cctggaagtgggg-c--a Bushbaby cagcc---------ccccagcctctgc----aaatgcctactgtgct-----cacggaaatggggaa--a Tree shrew cagcc---------cagaaga--ctgc----gaatgctcgctgggcg-----cacgaaagtcgga-c--g Malayan flying lemur caacc---------cctcaga--ctcttcg-aaacgctccctgggcg-----cacgaaagtgggg-caaa Pig cagtc---------ct-caga--gtccggg-aagcattcactgggca-----cccaagagctggg-cacc Dolphin cagcc---------ctgcaga--ctccgag-aagcgatcactgggca-----cccaacagctggg-caca Cow cagcc---------cagaaaa--gtccgag-aagccctcgctgg---------------actggg-cata Sheep cagcc---------cagaaaa--gtccgag-aagccctcactgg---------------actggg-cata Horse cagccccgcagagtcgacgga--gctgggc-acgcacgagctgagca-----c-----agt--------- Chinese pangolin cagc----------cggcagg--gtctgag-aagcactcgctggaag-----c-----agtccag---ca Dog cagcc---------cagcaaa--gtcaggg-aggcactcgctgggct-----c----gaattgag---ta Hawaiian monk seal cagcc---------cagcaaa--ttccgcg-aggagctaactgagct---cac----gagctgag---tc Elephant cagcc---------cagcaga--gtccaca-aagcactcactgggctgggcgcacggaacctgcg-cacg Tenrec cggac-----------------------------------ctcggct-------tggaacccgcg-cccg Hedgehog ====================================================================== Pika ====================================================================== Zebrafish ====================================================================== X. tropicalis ====================================================================== Opossum ====================================================================== Chicken ====================================================================== Shrew ====================================================================== Mouse ------gagcacactc-agagaacacttct---tgc----ccg---------------tga--------- Rat ------gagcacactc-agaagacacagct---ttc----gcgagttc-----at--gtga--------- GCF_003668045 ------gagcacaccc-agaggacactaca---tgc----atgggttt-----gt--gtga--------- Beaver ------gagtcagctc-agaggtcgctact---tac----ttgcgtgt-----gctggtgg--------- Squirrel ------gaatcagttt-agaggtcgccact---cac-----tgccagt-----gt--ctga--------- Guinea pig ------gag----ctt-agaggttgctgct---gacagtaatgggtct-----tc--aaga--------- Rabbit ------gagcccaccc-aaaggccaccact---cat---tgtgcattt-----gggggtgg--------- Human ------gatttggcgc-agaggtcgatact---cac-----tgcctgt-----ct--gtga--------- Chimp ------gatttggcgc-agaggtcgatagt---cac-----tgtctgt-----ct--gtga--------- Bonobo ------gatttggcgc-agaggtcgatact---cac-----tgtctgt-----ct--gtga--------- Gorilla ------gatttggcgc-agaggtcgatact---cac-----tgtctgt-----ct--gtga--------- Rhesus ------gattcggcgc-agaggtcgaaact---cac-----tgcgtgt-----c----tga--------- Marmoset ------cattctgcgc-agaggacgacact---cac-----tgcttgt-----ct--gtga--------- Tarsier ------gagtccgtgc-agaggtcgctatt---cac-----tgcgtgt-----ct--gtg---------- Bushbaby ------gagtccgtgc-agag------------------------tgt-----gt--ctga--------- Tree shrew ------gagtcggcgc-agaggtagctact---cac-----cgcgtgt-----ct--------------- Malayan flying lemur ------gaaccagcgc-agaggtcgctgct---cac-----tgcgtgtgtctgtt--------------- Pig ------gagtccatgc-aggggtcactact---cag-----gatgtat-----ca--gtgag--ggg--- Dolphin ------gagtccgcgc-aggggtcgctact---cag-----tgtgtgt-----cg--gcgag--ggg--- Cow ------gagtctgcgc-aggggacgctact---tag-----tgtgtgt-----ta--gtgag--agg--- Sheep ------gagactgcgc-aggggtcgctact---cgg-----tgtg------------gtgag--agg--- Horse --------gtcagtgc-acaggtcgctact---cgc-----taggtgt-----ct--gtag--------- Chinese pangolin ------gaatttgcgc-agaggtcgccgct---cac-------ggtgt-----ct--tttg--------- Dog ------gagtccgcgcaagaggtagcggtg-------------cgtgt-----cg--ggggg--gggggg Hawaiian monk seal ------gagtccgcgcgagaggtagctgtg-------------agtgt-----ct--gtgg--------- Elephant ------gagtccgtgc-aggagttgatg-----cag-----cttgtgt-----cc--gtg----cggggt Tenrec gagtcagagtctgtgc-tagagttgatattctccat-----tttttgt-----ct--gtgggtttgggtt Hedgehog ====================================================================== Pika ====================================================================== Zebrafish ====================================================================== X. tropicalis ====================================================================== Opossum ====================================================================== Chicken ====================================================================== Shrew ====================================================================== Mouse -----------------ggat---------gaaggttcc----t-ca----tc--acggagca Rat -----------------ggat---------ggagggtcc----t-ca----tc--aaggggca GCF_003668045 -----------------ggttt--gc----aaaggttcc----t-ca----cc--cagggaca Beaver -----------------ggggga-gg----gacggtgcc----t-ga----tg--aagttgca Squirrel -----------------ggggggcgg----gggcattcc----t-gg----tc--aagttgta Guinea pig -----------------gaag---------agggattcc----t-ga----tt--aggttgca Rabbit -----------------ggtg---------ggaggctcc----t-gggcattc--tagtgttg Human -----------------ggggggag-----gaggattccttcct-gg----tc--aagttgcc Chimp -----------------ggggggag-----gaggattccttctt-ga----tc--aagttgcc Bonobo -----------------gaggggag-----gaggattccttcct-ga----tc--aagttgcc Gorilla -----------------ggggggag-----gaggattccttcct-ga----tc--aagttgcc Rhesus -----------------ggtgggag-----gaggattcccgctt-ga----tc--aagttgcc Marmoset -----------------ggaggaag-----gaggattcc----t-ga----tc--aagttgct Tarsier -----------------gggggaag-----gagg------ccct-gg----tc--aagttgcc Bushbaby -----------------ggtagaag-----aggggttcc----t-ga----gc--aaggtgcc Tree shrew -----------------gcagacag-----agaggtttctc---------------------- Malayan flying lemur -----------------gggggaag-----gggtgttcctc-----a----tc--aagttgcg Pig -----------------gaggagaggccagggggagcct----t-ga----ta--aagatacc Dolphin -----------------ggagaggggtcagggggactct----t-ga----tc--aagatgcc Cow -----------------gaagaggggtcagaggatctct----g-ga----tc--aagatgcc Sheep -----------------gaagaggagtcagaggaactct----g-ga----tc--aagatgac Horse -----------------ggggaggggaa-gggggattct----t-ga----tc--aagatgcc Chinese pangolin -----------------ggggaggggtc--tggaattct----t-ga----tg--aaaatgct Dog gggggggggggggggcaggggaggggacagggagcttct----t-ga----ccaagagaagcc Hawaiian monk seal -----------------ggggaggggtcagggagcttct----t-ga----tc--gagaagcc Elephant gt---------------gcggggagtttggggagattct----c-ga----cc--aggaagcc Tenrec gt---------------gcggggcgtttggagggaattt----ctga----tc--aagaagct Hedgehog =============================================================== Pika =============================================================== Zebrafish =============================================================== X. tropicalis =============================================================== Opossum =============================================================== Chicken =============================================================== Shrew =============================================================== Alignment block 17 of 317 in window, 56740759 - 56740879, 121 bps B D Mouse gagcacagtatcttctg---tg-----------agcaag-tctcaggcgaagttc----tgatctccact B D Rat gacca----atttt--------------------------------------tcc----tggtctctgct GCF_003668045 gaacataatctttcctt---tg-----------cacagg-tctcaggc----tcc----gtttctcaaga Beaver gaacatattcattcctt---tg-----------cg-----------------ctc----agatatc-gtg B D Squirrel gagcccgttcattcctt---ag-----------cgcaag-cctaaggcaaaatcg----taaactcagct B D Guinea pig gagtaggttcactcttc---tg-----------cgcaag-cttcagacaaagctc----taaactccact B D Rabbit gga---gctcagtcctt---cg-----------cgcaag-ccgaaggcaacatcg----taagcgc-cct B D Human gggcatgttcattccct---cc-----------cgcaag-cctaaggcagagtca----taagctcccct B D Chimp gggcatgttcattccct---cc-----------cgcaag-cctaaggcagagtca----taagctcccct B D Bonobo gggcatgttcattccct---cc-----------cgcaag-cctaaggcagagtca----taagctcccct B D Gorilla gggcatgttcattccct---cc-----------cgcaag-cctaaggcagagtca----taagctcccct B D Rhesus gggcaagttcagtccct---cc-----------cgcaag-cctaaggcaaagtcg----taagctcccct B D Marmoset gggcatgttcattccct---cc-----------tg-aag-cctaaggcaaagtcg----taaactcccct B D Tarsier aggcatgctcattcctc---cg-----------cgcaaa-ccttcggcaaagact----taagcacccct B D Bushbaby cagcatgttcgtgcctt---tg-----------cataag-ccta-------------------------- B D Tree shrew ----------attcctt---ag-----------cgcaag-cccacggcaaagtcc----taaactc-ctt B D Malayan flying lemur gagcatattaattcctt---ct-----------cgcaat-cccaaagcaaagtcactcgtaagctctcct B D Pig cagcacattcatttctt---cg-----------cacaag-cctaaagagagatcg----tatgctcccct B D Dolphin cagcacgttcattcctt---cg-----------cacaag-cctcaggcaaaatcg----tatactcccct B D Cow cagcacgttcattcctt---cg-----------cacaag-cctaaggcaaaatcg----tatgctcccct B D Sheep cagcacgttcattcctt---cg-----------cacaag-cttaaggcaaaatcg----tatgctcccct B D Horse cagcgagttcattccta---ag-----------cctaag-cctaaggcaaagttg----ttaactcccct B D Chinese pangolin cagcatgctcattcttc---cg-----------cactag-cctaaggcaaagtcg----tgagctcccct B D Dog cagtatgttcaatcttt---ca-----------cacaaa-cct------cagtcg----taggctcctct B D Hawaiian monk seal cagcatgttcaatcttt---ca-----------cagaaa-cct------cagtcg----taggcacctct B D Shrew ----gtgctccttttcttcgtg-----------cataaa-ccttaggcaaagtct----ccagactccct B D Elephant gagagagttcattcctt---cc-----------agcaag-cctaaaacaaagtcg----taaactgtcct B D Tenrec gggcgcgttcgtttttt---caatgaacaaaagagcaaatcctaaagc--agtca----taaactgtctt B D Hedgehog ====================================================================== B D Pika ====================================================================== B D Zebrafish ====================================================================== B D X. tropicalis ====================================================================== B D Opossum ====================================================================== B D Chicken ====================================================================== Mouse c---ag---tctctgagttgcaagtaatttatactatagcatggggctggggg-----tgcttctgaaat Rat c---ag---tctcagagtcgcaagta--ctatactatagcacgggggcggggg---gttacttctgaaat GCF_003668045 c---at---ttacaggatcgaacatg--gtgt------gtgtgtgtgtgggggggtgctgcttctgaaat Beaver a---ag---tctgttaac----------ttacaccagagcccttagaaggaga--tgcagcttctgaaat Squirrel ctgaag---tcgaaaagtctcaattaatttacacgttatccctaagaaggagc-----tacttttaaaat Guinea pig g---agatattgcaaagtttcaat----ctttttcacaatccgaaaaagaaat--tactacttctaaagt Rabbit c---ag---c------------------ttacaccccaattccaagaaggaga--tgccccctttaaaat Human a---cgatgcggcaaagtctcaactaatttatctaccagccttaagaaggagc--tgctgcttctaaaat Chimp c---cgatgcggcaaagtctcaactaatttatctaccagccttaagaaggagc--tgctgcttctaaaat Bonobo c---cgatgcggcaaagtctcaactaatttatctaccagccttaagaaggagc--tgctgcttctaaaat Gorilla c---cgatgcggcaaagtctcaactaatttatctaccagccttaagaaggagc--tgctgcttctaaaat Rhesus c---cgatgaggcaaagcctcaactaatttatctaccagccttaagaaggagc--tgctgcttctaaaat Marmoset c---cgatgcgtcaaaaactcaattaatgtat----cagccttaagaaggcgc--ttctgcttctaaaat Tarsier c---aggtatcacaaagtctcagcggacttacatcccagccctaagaaggagt--tgagacttctaaaaa Bushbaby ---------tggcaaagtatcgactgatttacacccggtccttaaaaaggagc--tgatgcttctagaat Tree shrew c---agatactgcaaggtctccattaattcaca-cccagcactagaaaggagc-atgctgcttctaaaat Malayan flying lemur c---agatatcacaaagtctcgattaatttacaccccagccctaagaaggagc--tgctgcttcttaaat Pig c---ggatatcac--agtctcaactaagttgcacctcag---ccccaaggagc--tgctgcttttaaaat Dolphin c---ggataccgc--agactcaactaaattgcccc--------aagaaggagc--tgttgcttttaaaat Cow c---agatgtcgc--agactc----aaattgcccc--------aacagcaatt--agctgcttttcaaat Sheep c---agatgtcgc--agactc----aaactgcccc---------acagcgatc--tgctgcttttcaaat Horse c---ggctagcgc--agtctcaactaatttgcaccccatccccaagaaggagc--cgctgcttttaaagt Chinese pangolin c---agata--gc--agtctc----aatatgcaccccagctccaagaaggagc--tgctgcttttaaagt Dog t---tgacatccc--ag--tcaaataatttgcacccaatccccaggaagaaat--tgctgcattaagaat Hawaiian monk seal c---tgatatctc--agtctcaattaatttgcacccaatccccaggaaagaat--tgctgtattaaaaat Shrew c---aaatagcgg--gatctcaactaatttgcaccccagcctc---aaggagc--cactgcttgtaaaat Elephant c---aaatgtcgcgaagcctcagctaatttgcgctccagccccaagaaagagc--tgctgctcctaaaat Tenrec c---agtggtctccaagactcagctaatttgtgctccagtccgaagaagctgc--tgctgcatcaaaatt Hedgehog ====================================================================== Pika ====================================================================== Zebrafish ====================================================================== X. tropicalis ====================================================================== Opossum ====================================================================== Chicken ====================================================================== Mouse c-tt-----------gg-ctttcc Rat c-tt-----------gg-cgttcc GCF_003668045 c-ttgg-ttccccgagg-ctctcc Beaver c-tcggattcccacagg-acctct Squirrel c-ttggattcccgagag-ccctcc Guinea pig c-ttggatttgggaaggtccttcc Rabbit c-ttcgatttccgaagg-ccctcc Human ctttagatttcc------------ Chimp ctttagatttcc------------ Bonobo ctttagatttcc------------ Gorilla ctttagatttcc------------ Rhesus ctttagatttcc------------ Marmoset ctttagatttcc------------ Tarsier tcttagactctc------------ Bushbaby c-ttagattccc------------ Tree shrew c-ttggattccc------------ Malayan flying lemur c-ttgacttccc------------ Pig c-tgtgtttcccaaaggacctcc- Dolphin c-tgggacccacaaaggacctcc- Cow t-tgggatccacaaaggccctcc- Sheep t-tgggatccacaaaggccctcc- Horse c-ttggattcccaaaggacctcc- Chinese pangolin c-ttggatttctaaaggacctcc- Dog c-ttggattctcaggggacctct- Hawaiian monk seal c-ttggattctccaaggacctct- Shrew c-aaggatcaccgatggacctcc- Elephant c-ttgggttcct------------ Tenrec c-ttggatttcc------------ Hedgehog ======================== Pika ======================== Zebrafish ======================== X. tropicalis ======================== Opossum ======================== Chicken ======================== Inserts between block 17 and 18 in window B D Human 11bp B D Chimp 11bp B D Bonobo 11bp B D Gorilla 11bp B D Rhesus 11bp B D Marmoset 11bp B D Tarsier 11bp B D Bushbaby 11bp B D Tree shrew 189bp B D Malayan flying lemur 11bp B D Elephant 11bp B D Tenrec 11bp Alignment block 18 of 317 in window, 56740880 - 56741007, 128 bps B D Mouse ttgttataaagcacc---------tgactacgcaata----------caagta---ttgag----cggag B D Rat ttgttataaagcatg---------ggactgtgcaata----------caagta---ctgag----cggag GCF_003668045 atgttatagagcatc---------caactgtgccgca----------caagaagcgctgag---ttggag Beaver ttgttgtaaagtgcc---------aggctgtgtcaca----------caacaggcactgggta-tcggag B D Squirrel ttgttgtaaagcgcc---------aggaggtgccaca----------taacaggtattggg---taacag B D Guinea pig tcactgcatagcact---------agacagtgccata----------caacaggttttgaggg-ccaaag B D Rabbit a---tctaaagcgct---------cagcggtgccaca----------caacagatacgggg---tcagac B D Human ttgtgtaaaaatgcc---------aggcggtgccacacgatgtcacccaacaggtattggagg-tcagac B D Chimp ttgtgtaaaaatgcc---------aggcggtgccacacgatgtcacccaacaggtattggagg-tcagac B D Bonobo ttgtgtaaaaatgcc---------aggcggtgccacacgatgtcacccaacaggtattggagg-tcagac B D Gorilla ttgtgtaaaaatgcc---------aggcggtgccacacgatgtcacccaacaggtattggagg-tcagac B D Rhesus ttgtgtaaaaatgcc---------aggcggtgccacatggtgtcatccaacaggtattggggg-tcagac B D Marmoset ttatgtaaaaatgcc---------aggcggtgccacacggtgtcactcaacagatattgg-gg-tcagac B D Tarsier ttatgtgaaga-gcc---------aggtggtgccacg----------cagcaggtattggggg-gcagac B D Bushbaby ttatgcaaagct-cc---------agatggtgtcaca----------caacaggtattggggg-tcaggc B D Malayan flying lemur ttgt---aaaatgct---------aggcggtgtcat---------ccaaacaggtattggggg-tcagac B D Pig aa----taaagctcc---------ggatggtgccacg----------caacaggtatcgggag-tcagac B D Dolphin gagttctagagcagc---------agggggtgccaca----------caacaggtactgcggg-tcagac B D Cow gagttgtagaattcctgtattacatgtagatgccatg----------taacaggtattgggggatcagac B D Sheep gagttgtagaatacctgtactacatgtagatgtcatg----------tagcaggtattgggggatcagac B D Horse gcgttgtaaagcgcc---------aggtggtgccaca----------caacaggtattggggg-tcagac B D Chinese pangolin gcgttgtaaagcgtc---------aggaggtgcaaca----------taacaggtattagggg-tcagac B D Dog gcgtggcaaaatacc---------aggcggtgccaaa----------caataggtatttgggg-tcagac B D Hawaiian monk seal gcgtggtaaaatacc---------aggcggtgccaaa----------caataggtatttgggg-tcagac B D Shrew gttttgtaaagctga---------aagcactgccaca----------caacagatactggaaactcagac B D Elephant gtgttgtaaagggcc---------aggtgctgccaca----------caacaggtattggggg-ttagac B D Tenrec gtgttgtaaaggaac---------aggtggtgct-ca----------caacaggtattgggag-tcagaa B D Tree shrew ====================================================================== B D Hedgehog ====================================================================== B D Pika ====================================================================== B D Zebrafish ====================================================================== B D X. tropicalis ====================================================================== B D Opossum ====================================================================== B D Chicken ====================================================================== Mouse acaaggatgaaaccac---aaagtcgagccttgaaatgactttgaacatctgaaacc-----a-----ac Rat acaagaaccaaaccac---aaagccaagctttgtaagaactttgaacatctgaaatc-----a-----ac GCF_003668045 acaacggtaaaaccac---aaagtcaagctgtgcaaagactttaaacatttgaaacc-----g-----ac Beaver --tagggtgaaatcactctcaagtaaaactttgagaagatcctaaacatttgaaacc-----a-----ac Squirrel accagggtaaaatctc--tcaagtcaaaattggagaagactttaaacatttgaaacc-----a-----ac Guinea pig --cagggtaaaattgctttcaaatggaactttgagaatatcttagaccctggaaacc-----a-----ac Rabbit --tagggtgaaatcgc---tatccagacttcggaaaggatattaaacatttgaagcc-----a-----at Human --caggctgaaattgctatcaagtcaaacttcaagaagattttaaacatttgaaacc-----a-----ac Chimp --cagggtgaaattgctatcaagtcaaacttcaagaagattttaaacatttgaaacc-----a-----ac Bonobo --cagggtgaaatt-ctatcaagtcaaacttcaagaagattttaaacatttgaaacc-----a-----ac Gorilla --cagggtgaaattgctatcaagtcaaacttcaagaagattttaaacatttgaaacc-----a-----ac Rhesus --cagggtgaaattgctatcaagtcaaacttc---aagattttaaacatttgaaacc-----a-----ac Marmoset --tagagtgaaatttctatcaaatcaaactttaagaagattttaaacatttgaaacc-----a-----ac Tarsier --cagggtgaaatcgctatccagccagatatc---gagatttcaaacatttgaaatc-----a-----ac Bushbaby --caaggtgaactcgctatcaagtcaaacttaa--aagattttaaacatttgaaacc-----a-----ac Malayan flying lemur --caggaataaattgctttcaagataaacttcgagaagattttaaatatttgagacc-----a-----ac Pig --ctgggtgaaatcactgtcaagtcaaacc-----aagattttaaatgactgaatcaacaata-----ac Dolphin --cggggtgaaatcgctgtcaagtcaaacttc---gagattttaaacaactgaaacagcaaca-----ac Cow --cctggtgaaatcgctgtcaagtcaaacttg---gagattttaaacaattgaaacaaaaaca-----ac Sheep --cctggtgaaatcgctgtcaagtcaaacttg---gagattttaaacaactgaaacaga---a-----ac Horse --cacggtgaaatcgctatcaagtcaaacttc---gagattttaaacaggtgaaaca-----a-----ca Chinese pangolin --cagggtgaaatcactattaagtcaaacttc---gagactttaagcaattgaaaca-----a-----a- Dog --cagggtgaaatcactatcaagacaaactgc---gagattttgaacaattgaaaca-----a-----ac Hawaiian monk seal --ccgggtgaaatcgctgtcaagtcaaactgc---gagattttaaacaattggaaca-----a-----ac Shrew --ctgggtgaaatctctgtcaagtcaaactg----gagattttaaac-atttaaacg-----a-----ac Elephant --cagaacgaaatcactatcaagtcaaaattcgagaacagtttaagcatttaaaacc-----atgttcaa Tenrec --aaggaggaaatcactatttgctcaaaatccgagaa---------gatttaaaacc-----aagttcaa Tree shrew ====================================================================== Hedgehog ====================================================================== Pika ====================================================================== Zebrafish ====================================================================== X. tropicalis ====================================================================== Opossum ====================================================================== Chicken ====================================================================== Mouse aaa-taaaggg------gggggggggctatgttc Rat aaa-taagggg------gggggg------tgttc GCF_003668045 caa-caaaaat------cagggg---ctatgttc Beaver aaa-caaaaa----------gag---tcaaattc Squirrel aaa-caaaaa---------ggga---ataaattc Guinea pig caa-caaacta------aaaggg---atgaaatc Rabbit caa-ccagca---------aagg----------- Human caa-caaaaa----------ggg---acaagttc Chimp caa-caaaaa----------ggg---acaagttc Bonobo caa-caaaaa----------ggg---acaagttc Gorilla caa-caaaaa----------ggg---acaagttc Rhesus caa-caaaaa----------ggg---acaagttc Marmoset caa-caaaaa----------ggg---acaagttc Tarsier aaa-caaaaa----------ggg-a-acaagtta Bushbaby gaaccaaaaa----------ggg---acaagttc Malayan flying lemur caa-caaaaa----------agg-agacaagtta Pig aac-aacaaa--------ggcag---acaaattc Dolphin aac-caaaaa--------ggcag---ataagttc Cow aac-cgcaaa--------ggcag---acaagttc Sheep aac-cgcaaa--------ggcag---acaagttc Horse atc-caaaga--------ggcag---acaagttc Chinese pangolin --c-caaaa------------ag---acaagttc Dog -----aaaa------------ag---acaaattc Hawaiian monk seal aaa-taaaa------------ag---acaagttc Shrew aaa-taaaca--------agcag---gcaagttt Elephant gga-caaaaagccaagtaatagg---acaagttc Tenrec gga-taaaaggccaagtaaaagg---ccaagttc Tree shrew ================================== Hedgehog ================================== Pika ================================== Zebrafish ================================== X. tropicalis ================================== Opossum ================================== Chicken ================================== Alignment block 19 of 317 in window, 56741008 - 56741072, 65 bps B D Mouse aag---tatttctattt----gtgaagcctcattgtggaaatacctgactgc----aataaaa-gaca-- B D Rat aag---tatttctgttt----gtgaaaccttcttgtg-aaatacctgactgc----aataaaa-gaca-- GCF_003668045 aag---tatttctgttt----gtgaaacc---ttgtg-aggttcctga-tat----gacacaa-gaca-- Beaver aac---tatttctagtt----gtgaagcttt-tcaca-agatccctgagtataaagaattaaa-ggtg-- B D Squirrel aag---tatttctagat----ttaagacgtt-tcaca-agat-ctcgattgtgaaaaatcaaa-cgtg-- B D Guinea pig aaa---tatttctagct----gtgagacttt-ttgca-agat-cttgatagt----aatctaattaaa-- B D Rabbit ------tatttccagtg----gtgggacttt-tccca-agat-cccggttgtaaagaattaaa-gatg-- B D Human aag---tatgtctagtt----gtgggatttc-cccca-agat-tccgattctaaagagt-----ggtg-- B D Chimp aag---tatgtctagtt----gtgggatttc-cccca-agat-tccgattctaaagagt-----ggtg-- B D Bonobo aag---tatgtctagtt----gtgggatttc-cccca-agat-tccgattctaaagagt-----ggtg-- B D Gorilla aag---tatgtctagtt----gtgggatttc-cccca-agat-tccgattctaaagagt-----ggtg-- B D Rhesus aac---tatgtctagtt----gtgggatttt-tccca-agat-tccgattctaacgaat-----ggtg-- B D Marmoset aag---tatgtctagtt----gtgggacttt-tttca-agat-tacgattgtaaagaat-----ggtg-- B D Tarsier aag---tatgtctagtc----gtgggacttt-tcaca-agat-gccagctgtgcagaattaaa-ggtg-- B D Bushbaby aag---taggtctagtt----gtaggacttt-tcaca-agat-ttaaatcgtaaagaattaaa-ggta-- B D Malayan flying lemur aag---tatttatagttgttggtgggactta-tcact-aact-cc--attgcaaagaattaaa-ggtg-- B D Pig aag---tatttttagtt----gcgggccttc-ccata-agaa-tctgattgtgaagacttaag-ggtg-- B D Dolphin aag---tatttctagtt----gtggcacttt-ccaca-agaa-cctgattgtaaagcattaag-gatg-- B D Cow aag---tatgtctagtt----gtgggacttt-ccaca-agaa-gctggttgtaaagaattaag-gatg-- B D Sheep aag---tatgtctagtt----gtgggacttt-ccaca-agaa-gctggttgtaaagaattaag-gatg-- B D Horse gac---tatttccattt----gtgggctttt-tcaca-agaa-cccagttgtcaagaattaag-ggtg-- B D Chinese pangolin aaa---gatttctggtt----acgagaattt-tcaca-agaa-cccaactgtaaataattaaa-ggtg-- B D Dog aag---tatttctaatt----gtaagacttt-ttgca-agaa-cccgattataaacagttaag-ggtg-- B D Hawaiian monk seal aag---tatttctagct----gtgagacttg-t------------------aaaagaattaag-ggtg-- B D Hedgehog aaa---tatttctagtt----gtggaacttt-tcaca-aaaa-ctcgactgtaaggaattcag-agag-- B D Shrew --g---tgtttctagtt----gtggaacttc-acaca-agaa-cttgattgtaaatgtttcag-agag-- B D Elephant aagtattatttctagat----gtggaacttt-ccaca-agat-cctgata----agcatgaag-ggtgtt B D Tenrec aagtgttacttctcgat----atgggacttg-cctta-agag-cccgacgacacagtattaag-ggta-t B D Tree shrew ====================================================================== B D Pika ====================================================================== B D Zebrafish ====================================================================== B D X. tropicalis ====================================================================== B D Opossum ====================================================================== B D Chicken ====================================================================== Mouse -tttgaa------gta------------ Rat -ttt-aa------gta------------ GCF_003668045 -tttgaa------gta------------ Beaver -tttgaactcttcttt------------ Squirrel -tttaaattcgtcttc------------ Guinea pig -tttgaattcagcatc------------ Rabbit -cttgaattcattttt------------ Human -ttttagttc------------------ Chimp -ttttagttc------------------ Bonobo -ttttagttc------------------ Gorilla -ttttagttc------------------ Rhesus -ttttagttc------------------ Marmoset -ttttagttc------------------ Tarsier -tttgaactc------------------ Bushbaby -tttgagttc------------------ Malayan flying lemur -tttgaattc------------------ Pig -tttgaattc------------------ Dolphin -tttgacatc------------------ Cow -tttgacttc------------------ Sheep -tttgacttc------------------ Horse -tttgaattc------------------ Chinese pangolin -tttgaagta------------------ Dog -tttgaatgt------------------ Hawaiian monk seal -tttgaatgc------------------ Hedgehog -tttgaattc------------------ Shrew -tttgaacgc------------------ Elephant tttttcatcc------accttt-ctttt Tenrec tctttcaccc------acctttcctttt Tree shrew ============================ Pika ============================ Zebrafish ============================ X. tropicalis ============================ Opossum ============================ Chicken ============================ Inserts between block 19 and 20 in window B D Human 6bp B D Chimp 6bp B D Bonobo 6bp B D Gorilla 6bp B D Rhesus 6bp B D Marmoset 6bp B D Tarsier 11bp B D Bushbaby 6bp B D Malayan flying lemur 6bp B D Pig 11bp B D Dolphin 11bp B D Cow 11bp B D Sheep 11bp B D Horse 6bp B D Chinese pangolin 11bp B D Dog 6bp B D Hawaiian monk seal 6bp B D Hedgehog 12bp B D Shrew 76bp Alignment block 20 of 317 in window, 56741073 - 56741132, 60 bps B D Mouse atctttcaa-tcct---taact-t-g---attg---------------------t-aacttgaattca-- B D Rat atctttcaaatctt---tcaca-g-c---tcag---------------------t-aatttgaattca-- GCF_003668045 atctttcaaatcct---ttcca-g-c---tcag---------------------t-catttggattca-- Beaver atctttgagatctc---tcacact-c---taag---------------------taaatttgaattca-- B D Squirrel atctttcaaatcct---tcagaca-c---taag---------------------taaattcggattta-- B D Guinea pig atc--tcagccaca---gaagaag-c---acag---------------------ctggttctaacaga-- B D Rabbit atctttcaaattct---catc--c-c---ccag---------------------taaacttgactgta-- B D Human acctttcacatcct---ccattctgt---tagg---------------------taattttgaattta-- B D Chimp acctttcacatcct---ccattctgt---tagg---------------------taattttgaattta-- B D Bonobo acctttcacatcct---ccattctgt---tagg---------------------taattttgaattta-- B D Gorilla acctttcacatcct---ccattctgt---tagg---------------------taattttgaattta-- B D Rhesus atctttcacatcct---ccattctgt---tagg---------------------taactttgaattta-- B D Marmoset atctttcacatcct---tcattctgt---tagg---------------------taac--cgaattta-- B D Tarsier atctttcaaatcct---tc------c---cagg---------------------agat-ttgaattta-- B D Bushbaby atcttgcaagtcct---tagccct-c---taag---------------------tgaacttgaatt---- B D Tree shrew atctttaaaatcct---tcacgtc-ttaataat---------------------tacgcttgaacgtg-- B D Malayan flying lemur atttttcaaaccct---tcacact-c---taag---------------------taagtttgaactta-- B D Pig atctttcaaatcct---tcataca-t------g---------------------taaattt------a-- B D Dolphin atctttcaaatctt---tcctacc-t------g---------------------taaatttcaactta-- B D Cow atctttcaaatcct---tcatacc-t------g---------------------tacatttcaactta-- B D Sheep atctttcaaatcct---tcatacc-t------g---------------------tacatttcaactaa-- B D Horse atctttcaaatcct---tcatact-g----------------------------taaatttgaacatatc B D Chinese pangolin acctttcaaatcct---tcatacc-t----------------------------gtaatttgagctta-- B D Dog atcttttaaatcct---tcttacc-t------g---------------------taaatttgaagtca-- B D Hawaiian monk seal atctttt-cattct---tcttacc-t------a---------------------taaacttgaaatca-- B D Hedgehog gtctttcaactccc---tcagacc-t------g---------------------taacttcatgctga-- B D Shrew tttttttggtttttgggtcacacc-t------ggcgatgcacaggggttactcctggctctgcactca-- B D Elephant atctttcaaaacct---tcatatc-t------c---------------------taaacttgaactta-- B D Tenrec ctctctcaagccct---tcacacc-t------c---------------------taaatttgaacttt-- B D Pika ====================================================================== B D Zebrafish ====================================================================== B D X. tropicalis ====================================================================== B D Opossum ====================================================================== B D Chicken ====================================================================== Mouse ---gggtgc-acac-cc---------------accaca---gaa--g--c Rat ---gagtgc-accc-cc---------------agcaca---gaa--g--c GCF_003668045 ---tagtgt-atgc-tc---------------attaca---gaa--g--c Beaver ---gagtgt-atcc-cc---------------gccaca---gaa--g--c Squirrel ---gaatat-gtcc-cc---------------atccta---gaa--g--t Guinea pig ---agttgt-ccct-tccaccagcataatct-aacaca---g-a--g--c Rabbit ---gagcg------------------------------------------ Human ---gagtgc-atcc-ta---------------accata---gaa--g--t Chimp ---gagtgc-atcc-ta---------------accata---gaa--g--t Bonobo ---gagtgc-atcc-ta---------------accata---gaa--g--t Gorilla ---gagtgc-atcc-ta---------------accata---gaa--g--t Rhesus ---cagtgc-atcc-ta---------------accata---gaa--g--t Marmoset ---gagtgc-atcc-tc---------------actata---caa--g--t Tarsier ---gagtga-gtga-cc---------------acccta---aaa--g--c Bushbaby ---gagtgc-ttcc-cc---------------accaca---gaa--g--t Tree shrew ---gaat------c-cc---------------accaca---gaa--gcct Malayan flying lemur ---gagtgt-gccc-cc---------------accata---aaa--acgt Pig ---gagtgc-tccctcc---------------accact---gaa--g--t Dolphin ---gagggc-accc-cc---------------gccata---gaa--a--c Cow ---gaatgc-accc-ct---------------gctatg---gaa--t--t Sheep ---gagtgc-accc-ct---------------gctatg---gaa--g--t Horse aatgcatcc-ccct-cc---------------cccata---gaa--g--c Chinese pangolin ---gagtgc-gccc-cc---------------accaga---gaa--g--c Dog ---gactgtggccc-ca---------------accaca---gaa--g--c Hawaiian monk seal ---gactgcggccc-ca---------------atcaca---gaa--g--c Hedgehog ---gagagc-aaac-cc---------------accaca---gaa--g--c Shrew ---ggaacc-actc-ctggcggtgctcaggggaccatatgggat--g--c Elephant ---gagtgc-gctc-tc---------------accatc---caa------ Tenrec ---gaatgt-aacc-tc---------------gccatc---aaacc---- Pika ================================================== Zebrafish ================================================== X. tropicalis ================================================== Opossum ================================================== Chicken ================================================== Inserts between block 20 and 21 in window Beaver 2bp B D Squirrel 2bp B D Guinea pig 2bp B D Pig 2bp B D Dolphin 2bp B D Cow 2bp B D Sheep 2bp B D Horse 2bp B D Chinese pangolin 2bp B D Dog 2bp B D Hawaiian monk seal 2bp B D Hedgehog 52bp B D Shrew 71bp Alignment block 21 of 317 in window, 56741133 - 56741166, 34 bps B D Mouse agatgcctggagatcaatggtcagctcc-aaga-----------ct B D Rat aggcaccaggagatcagtgttgagatcc-aaga-----------ct GCF_003668045 aggcacctggaaatcggcattgatttcc-aaga-----------ca Beaver gggtatttggagaccaatgttca-tttc-aaga-----------cg B D Squirrel gaggatctggagatcaaagttca-ttct-gagaagc----acagct B D Guinea pig gaggaactaaacatcaatttgca-tttc-aagaagt----aaaacc B D Rabbit agttatctaggggtcgttgctga-gttc-aaga------------- B D Human gggaatctggagat--ctgttcc-tttg-cagaagc----atggct B D Chimp gggaatctggagat--ctgttcc-tttg-cagaagc----atggct B D Bonobo gggaatctggagat--ctgttcc-tttg-cagaagc----atggct B D Gorilla gggaatctggagat--ctgttcc-tttg-cagaagc----at-gct B D Rhesus gagaatctggagat--ctgttcc-tttg-cagaagc----atagct B D Marmoset gggaatctggagat--ctgttcc-tttg-cagaagc----atggct B D Tarsier caggatccagagat--ctgttca-tctg-aagaagctcagctagct B D Bushbaby ggggatca--------cttttcg-tttg-gagcagc----acagcc B D Tree shrew ggaggtcgggagatcactgtgcc-tttc-aagaagc----tcaggt B D Malayan flying lemur ggggacctggagatcactgttcg-tttc-aagaagc----acaact B D Pig gaggat----------ctgttgt-tttc-aaaaagc---------- B D Dolphin gaggatctggagattactgttcg-tttc-aaaaagc---------- B D Cow gaggatctggagacgactgctca-tttc-aaaaagc---------- B D Sheep gaggatctggagattactgctca-tttc-aaaaagc---------- B D Horse gaggctctggacattactgttcc-tttc-aaaaagc---------- B D Chinese pangolin gaggatctggagattgctggtcg-ttca-aaaatgc---------- B D Dog gaaaatctggaggtggctcttca-tttc-aaaaagc---------- B D Hawaiian monk seal ggggctctggaggtggctcttcg-tttc-aaaaagc---------- B D Shrew gaggacctagggattacgataaa-ttttaaaaaaat---------- B D Elephant ---acgtggtggatcatggttag-tttc-aagaagc----acagcc B D Tenrec -tggctcggtgaatcattgttag-tttc-aagaaga----ataggt B D Hedgehog ============================================== B D Pika ============================================== B D Zebrafish ============================================== B D X. tropicalis ============================================== B D Opossum ============================================== B D Chicken ============================================== Inserts between block 21 and 22 in window B D Pig 6bp B D Dolphin 6bp B D Cow 6bp B D Sheep 6bp B D Horse 6bp B D Chinese pangolin 6bp B D Dog 6bp B D Hawaiian monk seal 6bp B D Shrew 6bp Alignment block 22 of 317 in window, 56741167 - 56741399, 233 bps B D Mouse g---attacta--gacgtcctgggctc-ttgtcatttactggtgaa--catcgggattcctctgatttc- B D Rat g---attagga--gatgtcctgggctc-tggtca------------------ggggtccatctgatttc- GCF_003668045 ggcagttaata--gatttcctgggctc-ttgtca----gtggtgagc-catcggggttcatctgacttc- Beaver c---atcactg--gtcattagtttctc-cacttacttactggccagc-gaactgggtccattcagtttc- B D Squirrel g---atcattacttttttcctgggttc-ttgtcatttgttggctagc-catctgggcccagtcagcttc- B D Guinea pig g---atgagt---tttcccctatgttc-ttgtcactttctgagaagt-gatctggggtcagtcagtttc- B D Rabbit ----agca-----tttatcctaggttc-ctgtcacttgctggcccgg-gatctaggcccagtccgcttg- B D Human g---atcatagt-tttttcctgggttc-ttgcaacttactgacctga-gatctgggaccagtcagcttc- B D Chimp g---atcatagt-tttttcctgggttc-ttgcaacttactgacctga-gatctgggaccagtcagcttc- B D Bonobo g---atcatagt-tttttcctgggttc-ttgcaacttactgacctga-gatctgggaccagtcagcttc- B D Gorilla g---atcacagt-tttttcctgggttc-ttgcaacttactaacctga-gatctgggaccagtcagcttc- B D Rhesus g---atcatagt-tttttcccgggttc-ttgtaacttactggcctga-gatctgggaccagtcagcttc- B D Marmoset g---atcacagt-tttgtcctgggttc-ttgtaacttactggcccaa-gatctgggac----cagcttc- B D Tarsier g---atcattag-tttttcctgagatc-gcctcatttact-acgaga-gatctggt-ccagtcagcttcc B D Bushbaby g---ttacta------ttcctgggttc-ttgtcacttactggtctgg-gatctgggcccagttagtttc- B D Tree shrew g---aggattag-tttttcctggattc-ttgtcacttaccg----gg-agtccggacccagtagggttc- B D Malayan flying lemur g---atcatcag-tttttcctgggttc-ttatcatttcctggcccgg-aatctgggtccaggcagcttc- B D Pig g---atcatgag-ttttccctgggctc-tagtcgtttactggcctca-tatctgggcccagtaagcttc- B D Dolphin g---atcatgag-tttttcctgggctc-ttgtcacttactggccc-g-gatgggggcccagtcagcttc- B D Cow g---atcatgag--ttttcctgggctc-ttgtcacttactggcct-a-gactggggcccagtcagcttc- B D Sheep g---atgatgag--ttttcctgggctc-ttgtcacttactggcct-a-gactggggcccagtcagcttc- B D Horse c---atcatgag-tttttcctgggttc-ttgtcacttactggctgtg-gatctgggcccagtcagcttc- B D Chinese pangolin g---atcattag-tttttcttgggttc-ttgtcacttact--------------gacccagttatcttc- B D Dog g---accattca-ttcttc-tggtttc-ttgtcacttactggcccag-aatctgggcccagtcagcttc- B D Hawaiian monk seal g---atcattca-tttttc-tggcttc-ttgtcacttactggccccg-aatctgggcccagtcagctgc- B D Hedgehog g---atcataag-attttctcaggttc-ttgtagcttaccaccatggaaatctgtgtcagatcaacttc- B D Shrew g---atcattag-ttattcctagacta-ttg----tcatattcttgg---cctgggtctattcaacttc- B D Elephant a---gtcagtat-tttttctggatgtc--tgtcacttactggtccag-gatctgggcccggtcaatttc- B D Tenrec g---atgattcg-ttttcccctgtgtctttgtcacttactagtct------------------------- B D Pika ====================================================================== B D Zebrafish ====================================================================== B D X. tropicalis ====================================================================== B D Opossum ====================================================================== B D Chicken ====================================================================== Mouse ---tttgtg---tgca-----g-----------------aaccttcg--------ggagag-tgcgcgca Rat ---tttgtg---taca-----g-----------------acctgaag--------ggagag-tggacgca GCF_003668045 ---cctgtg---tgcaaaattg-----------------aatcctcg--------gaagaa-tgggagca Beaver ---ctggtg---ttta-----g-----------------acct---------------gagctacacaca Squirrel ---cctctg---tgta-----g-------c--cacacacatacctcg--------ggactg-tgggagga Guinea pig ---cttgaa---tgta-----gacctgagc--cacacacgtccctgg--------ggactg-tgggaaga Rabbit ---tgtaca---tgcg-----a-----------------accccatgcatccctcggaccg-tggaaaga Human ---tctggg---tgta-----gaccgcagc--cacacacatccctgg--------ggactg-ttggggaa Chimp ---tctggg---tgta-----gaccgcagc--cacacacatccctgg--------ggactg-ttggggaa Bonobo ---tctggg---tgta-----gaccgcagc--cacacacatccctgg--------ggactg-ttggggaa Gorilla ---cctggg---tgta-----gaccgcagc--cacacacatccctgg--------ggactg-ttggggaa Rhesus ---cctggg---tgta-----gaccggagc--cacacacatccctag--------ggactg-ctggggaa Marmoset ---cctggg---ttta-----a--cagagc--cacacacatccctgg--------ggactg-ttggggaa Tarsier tttcctgtg---tgta-----gacccgagt--cacacatattcctgg--------ggacca-tgggagga Bushbaby ---ccagtg---agta-----gactggagc--tacacacatccctga--------ggactg-caaaagga Tree shrew ---tctgt----tgta-----gac-caagc--cagacacatccctca--------ggacta-tggtaggc Malayan flying lemur ---ctggtg---tgta-----gactcgagc--cacacacatccctcg--------ggactg-tgggagaa Pig ---cctatg---tgca-----gactagagc--c--acatataccttg--------ggattt-caggacaa Dolphin ---cctatg---tgta-----aaccagagc--c-----catccctcg--------ggattg-tgggacaa Cow ---cttatg---tgta-----aaccagagc--c-----catccctca--------gga------------ Sheep ---cctatg---tgta-----aaccagagc--c-----catccctca--------gga------------ Horse ---cctgtg---tgta-----gaccagaac--cacacacatctctct--------ggactg-tgggagaa Chinese pangolin ---cctgtg---tgta-----ga-cggaac--cacacacttccttca--------ggactg-tgggagaa Dog ---cctgta---ggta-----gaccagagc--catacacatcccttg--------ggattg-tgggagga Hawaiian monk seal ---cctgtatgtagta-----gaccagagccgcacacacatccctca--------ggactg-tgggagga Hedgehog ---cctgtt---ccct-----tagaacagt--cacacacatccctgc--------agattg-tgggagga Shrew ---cctgcg---tgca-----gagctgagt--cacacacgctggt-c--------agatcc-tgggaaga Elephant ---cctgtg---tgtaa----gaccctaat--c--acacacccctcg--------ggattg-tgggaggg Tenrec -------------------------------------------------------------------ggg Pika ====================================================================== Zebrafish ====================================================================== X. tropicalis ====================================================================== Opossum ====================================================================== Chicken ====================================================================== Mouse tca-c-ctacatcctggatatgtgt---ta--------aagagagggc----t----g-ttgt-gatgga Rat tcatc-ctacatattg----tgtgt---aa--------aagaggggca----a----g-ttgt-gatgga GCF_003668045 tgact-ctacatccta----tgggt---ac--------aagaggggcc----a----g-ttgt-gaaagc Beaver tcagc-ccaaatcctg----tgtgc---ac--------aaga-aggaa----t----g-ttgt-tactgt Squirrel tcagc-ttaaatactg----tgtac---ac--------aaga-aggag----c----g-tcgt-gaccat Guinea pig taagc-ac-ccccctg----gggag---ac--------aagg--------------------------gc Rabbit tcagc-cg-gatcccg----tgcgt---------------gggaggag----c----g-gagt-gactgc Human gcagc-ctgaatcctg----tgtgc---ac--------aagg----ag----c----c-ttctggattgt Chimp gcagc-ctgaatcctg----tgtgc---ac--------aagg----ag----c----c-ttctggattgt Bonobo gcagc-ctgaatcctg----tgtgc---ac--------aagg----ag----c----c-ttctggattgt Gorilla gcagt-ctgaatcctg----tgtgc---ac--------aagg----ag----c----c-ttctggattgt Rhesus gcagc-ctgaatcctg----tgtgc---ac--------aagg----ag----c----c-ttctggattgt Marmoset gcagc-ctgaatcctg----cgtgg---ac--------aaag----ag----c----c-ttgtggattgt Tarsier gcggc-ccgaaatctg----tgtgcagaaa--------aagg----ag----c----a-ctgtgggttgt Bushbaby tcatc-ct-aaccccg----tgtgc---aa--------agga----a----------------ggagaga Tree shrew tcagg-cggaatccta----tgtgc---cc--------aagg----ac----t----g-tcct-cactgt Malayan flying lemur tcagc-ccgaaacccg----tgtgc---gcaag-----aagg----ag----g----g-ttgt-gactgt Pig tcagg-ccaaaacctg----tgtgc---at--------aaga-aggtgctaac----g-ttat-gaaggt Dolphin tcagccccgaaacctg----tgtgc---ac--------aaga-aagagctaac----g--tat-gactgt Cow ------ctgaaacttt----tgcgc---ac--------caga-aggaggtaac----g-ttat-gactgt Sheep ------ctgaaacttt----tgcgc---ac--------cag--aggaggtaac----c-ttat-gactgt Horse tccgc-gggaatcctg----tgtac---ac---------aga-aagag----c----g-ttgt-gact-- Chinese pangolin tcagt-tcgaatcctg----tatgc---ac--------aaga-aagag----c----g-ttat-gactgt Dog tcaac-aggaatcct-----tgtgc---ac--------aaga-agtaa----t----g-ttat-gactgt Hawaiian monk seal tcaac-aggaatcctg----tgtgc---ac--------aaga-agtag----c----a-gtat------- Hedgehog tcagc-atgaatcctg----tgtac---acacacacacaaaa-aagag----c----c-gtat-gattgt Shrew cc-------actcctt----ggtgc---g---------gaaa-aaggg----c----cagtat-agttgc Elephant tcagc-tccaatcctt----tgtgc---ac--------aagg----ag----t----t-tcct-gactgt Tenrec tccat-cccaatactg----aaagc---ac--------aaga----aa----tggact-ttgt-gattgt Pika ====================================================================== Zebrafish ====================================================================== X. tropicalis ====================================================================== Opossum ====================================================================== Chicken ====================================================================== Mouse gacgaag---taatatca---tccactttcc-ggtgtcacacaaa---tacccgaatccattc-a-caat Rat gacacag---taatatca---tccactttcc-ggtgtaatacaga---tacccaaatccatt--a-cagt GCF_003668045 gatgcag---taatagca---tcctcttttc-tgtataatacaaa---tccccatat-tattc-a-aagt Beaver ccagtag---tagtatta---tcctctttgc-gaagtactataaa---atcccaaattcatt--a-aaat Squirrel caagtag---cactatcattgttctctatcc-gaagtagtaggaa---tccacagattcattt-a-aaat Guinea pig caggtagagttattgcta---tcctc-accc-acagtactgcaaa---ctctcacattcatt--a-aaaa Rabbit caagcgg---cagtgtcggtgtcttcgaccc-caagcagcacagactgctcccaagttcatta-a-caat Human caagtag---cagtaacagagttcacgaccc-caagcagtacaaa---ctcccaaattcacg--a-aaat Chimp caagtag---cagtaacagagttcacgaccc-caagcagtacaaa---ctcccaaattcacg--a-aaat Bonobo caagtag---cagtaacagagttcacgaccc-caagcagtacaaa---ctcccaaattcacg--a-aaat Gorilla caagtag---cagtgacagagttcacgaccc-caagcagtacaaa---ctcccaaattcacg--a-aaat Rhesus caagtag---cagtagcagagttcacgaccc-caagaagtacaaa---cttccaaattcagg--a-aaat Marmoset caagtag---cagtagcatagttcacgaccc-caagcagtaaaaa---ctcccaaattcacg--a-aaat Tarsier caagtcg---cagcattaaaatccgcgaccc-caagcagcacaaa---ctcccaagttcatt--a-aaat Bushbaby ggtggag---caggatcagtgtttgggacgg-c-agcagtatgaa---cttccaaattcatt--g-caat Tree shrew caagtag---cggtgtcagtatctacgaccc--aagcagtacaaa---ctcccacattcact--agaaac Malayan flying lemur ca---------------agtatcctcgaccc-gaaattgtacaaa---ttcccaaattcatt--aaaaat Pig gaagtag---cagcagcagtatcctcagcct-gaagcggtacaaa---ctcccaatttcatta-a-aaat Dolphin caagtag---cagtatcggtatcctcgacca-gaagcagtacaaa---ctcccaagttcatta-a-aaat Cow caagagg---cagtgtcaatagcctcgaccctgaagcagggcaaa---ctcccaggttcatta-a-aaat Sheep caagagg---cagtgtcaatagcctcgaccctgcagcagtgcaaa---ctcccaggttcatta-a-aaat Horse -aagtag---cagtatcagcatccttgatcc-gaagcagtacaaa---ctccctagtttatt--a-acat Chinese pangolin caaatag---cagtagcggtgtcattgacct-gaaacagtacaaa---ctcccaaattcatta-a-aaat Dog c---------------tagtatccttgaacc-taagcagtccaaa---cacccaggttc--ta-a-agat Hawaiian monk seal ----------------caatatcctcgacct-gaagcagtccaca---cacccaagttcatta-a-agat Hedgehog c-aatag---cagtgtcagtatccttgaccc-gaagctgtccaaa---cgttcaagttcatga-a-gaac Shrew caaagag---gagtgttggtggcctttacca-gaaa-----caga---tctctaagttcattt-a-aaat Elephant caagtag---cagta------tccttcgcct-gaagcagtacaaa---ctcccaaattcataaat-aaaa Tenrec caagtaa---cagta------tcctccatcc-gaaacagcataaa---ctctcaaatgcat---t-aaaa Pika ====================================================================== Zebrafish ====================================================================== X. tropicalis ====================================================================== Opossum ====================================================================== Chicken ====================================================================== Mouse gcttct----c------ttcc-------tt---atttcg-tccacatac-----gtca-c-a Rat gtttct----c------ttcc-------tt---atttcg-ttcacattc-----gtca-c-a GCF_003668045 gtttct----c------ttct-------tt---atttta-tccacattc-----ttca-c-a Beaver gttcct----t------gtcttgt-ttatt---attttg-ttcat-ttt-----ttta-t-a Squirrel attcac----c------ttgt----ttatt---attttg-ttcacattc-----ttca-c-a Guinea pig gtccct----c------atcttgt-tcatt---attttg-tccacattt-----tcca-c-a Rabbit gttcat----g------ctgt----ttatt---attttgagtcacatcc-----tcca-c-a Human atttct----c------ttcttgt-ttatt---attttgattcacattc-----tcca-c-a Chimp atttc-------------tcttgt-ttatt---attttgattcacattc-----tcca-c-a Bonobo atttct----c------ttcttgt-ttatt---attttgattcacattc-----tcca-c-a Gorilla atttct----c------ttcttgt-ttatt---attttgattcacattc-----tcca-c-a Rhesus atttct----c------ttcttgt-ttatt---attttgattcacattc-----tcca-c-a Marmoset attt-t----c------ttcttgt-ttatt---atttttattcacattc-----tcca-c-a Tarsier atttct----c------atcatgt-atatt---attttgattcacat-------ttca-t-a Bushbaby attcct----c------atgtcgc-ttgtt---a-tttgattctcactc-----tgca-c-a Tree shrew atccct----c------atcttgt-ttact---cttttgattcagtttccgcaatcca-t-- Malayan flying lemur gttctt----c------att---t-ttatt---attttgattcacattc-----tcca-c-- Pig gttttc----c------atcttgc-tttta---attctaattagcattc-----tcta-c-a Dolphin gttccc----c------atcttgc-ttttg---attttgattagcattc-----tcca-t-a Cow gtttcc----c------gccttgc-tttta---attttaattcgcattc-----tcca-t-a Sheep gtttcc----c------gccttgc-tttta---attttgattcgcattc-----tcca-taa Horse gttccc-----------atattgt-tttta---att----ttaacgttc-----tcca-t-a Chinese pangolin gttccctatct------atcttgt-ttttt---attttgattagcattt-----tccact-a Dog gtctcc----c------atcttgt-tttta---attttgattagcattc-----tcca-c-a Hawaiian monk seal gtgccc----c------atcttgg-tttta---atcttgatgagcgtcc-----tcca-t-a Hedgehog cttccc----cagctggctttcca-tttaa---attttgattcacagcc-----cccc-c-c Shrew gccccc----c--------tttgt-tttta---attttagctcacatca-----gcta-c-a Elephant gctcct----c------ttcatgtttttttaaaattttgattcatattc-----tcca-c-a Tenrec gtaact----c------ttc-----ttttt---attttgatttatattt-----gcca-a-a Pika ============================================================== Zebrafish ============================================================== X. tropicalis ============================================================== Opossum ============================================================== Chicken ============================================================== Inserts between block 22 and 23 in window B D Hedgehog 15bp B D Shrew 68bp Alignment block 23 of 317 in window, 56741400 - 56741468, 69 bps B D Mouse acctt--gtctcca-------taaagaaatgcatttctctgtc-ccaaactcttctatccgtt------t B D Rat acctt--gtctcca-------taaataaataaatttctctgtc-ccaaattgttctatcctcg------t GCF_003668045 acttt--gacccca-------taaataaatacattgcttcatc-ccaaattgttctctcctct------t Beaver acctt--tgcctca-------aatataaataaatttggcaacc-agaaagagtactgtacgctttaga-t B D Squirrel gactt--tacttca-------aatgttaataagcttggcctcc-aaaaagcatagtgtacact------t B D Guinea pig atcttc-tacttca-------cttataaataaatttggccacc-caaaagcatactgtccactataga-t B D Rabbit accctcatcccccacccccgccaaaagaataactttggccacc-gaaaagcg---tgaccact------t B D Human accct--aactgca-------aatattaataactttggctgca-aaaaagcatacggtacactttaga-t B D Chimp accct--aactgca-------aatattaataactttggctgca-aaaaagcatacggtacactttaga-t B D Bonobo accct--aactgca-------aatattaataactttggctgca-aaaaagcatacggtacactttaga-t B D Gorilla accct--aactgca-------aatattaataactttggctgca-aaaaagcatacggtacactttaga-t B D Rhesus accct--aaatgca-------aatattaataactttggctgca-aaaaggcatacggtacactttagg-t B D Marmoset accct--aactgca-------aatatcaataactttggctgcc-aacaagcatacagcaaactttaga-t B D Tarsier accct--tactgca-------aatattagtaactttggccacg-gaaaa-cgagctgtacact------t B D Bushbaby agcct--tactgta-------aatattaataactttggccac--aaaaggcatactgtgcact------- B D Tree shrew --------actcga-------aatgtgaataatttttgccgcc-cagaagcatacagtacactttagg-t B D Malayan flying lemur ---------------------aatatgaataactttggctgcc-aaaaagtgtactgtacactttaga-t B D Pig accca--tactcaa-------actgtgaataac--tgaccacc-caaaagaatattgtttgcttaaga-t B D Dolphin accgg--tactcaa-------actgtgaataactttgactgcc-aaaaagaatactgtacactttgga-t B D Cow accca--tactcaa-------aatgtgaataactttgaccgct-aaaaagactactgtacactttaca-t B D Sheep accca--tactcaa-------aatgtgaataactttgactgct-aaaaagactactgtacactttaca-t B D Horse atcca--tactcaa-------aacgtcaataactttggccacc-aaaaagagtactgtactctttaga-t B D Chinese pangolin accaa--tactcaa-------aatgtgaataac--tggccacc-aagaaaagtattgtatattttaaa-t B D Dog accca--tattcaa-------aatgtgattaattttggccgcc-aaaaagagtaatgtacactttaga-t B D Hawaiian monk seal accca--tactcaa-------aatgtgattaactttggctgcc-aaaaggagtactgtacactttagact B D Hedgehog gtcca--tactaaa-------atcgtggatagctttggccaccaaaaaagactgctacacacgtttca-a B D Elephant accga--tactcaa-------gttctgaataactttgagatcc-aaaaagcgtactgtacacttta---- B D Tenrec -----------------------tatgagtaactttaggagcc-ccaaagc-tagggtacacttcaga-c B D Pika ====================================================================== B D Zebrafish ====================================================================== B D X. tropicalis ====================================================================== B D Opossum ====================================================================== B D Chicken ====================================================================== B D Shrew ====================================================================== Mouse cgg-------attt------gggtgaat Rat cgg-------actt-c----gggtgaat GCF_003668045 tgg-------actt-c----gggtgagt Beaver tag-------actt-a----tggtgaaa Squirrel tag-------acaa------gagtgaag Guinea pig tag-------actt-atagtgaatgaac Rabbit cag-------accg-a----gagcgaag Human tag-------actt-a----cagtgaat Chimp tag-------actt-a----cagtgaat Bonobo tag-------actt-a----cagtgaat Gorilla tag-------actt-a----cagtgaat Rhesus tag-------actt-a----gagtgaac Marmoset tag-------actt-a----gcatgaac Tarsier tag-------actt-a----gaatgaac Bushbaby ------------tt-a----gaatgaac Tree shrew tag-------gctt-a----gaacgaac Malayan flying lemur caa-------actt-g----gagtgaac Pig tag-------actt-a----gg------ Dolphin tag-------cctt-a----gc------ Cow tag-------actt-a----gc------ Sheep tag-------actt-a----gc------ Horse tag-------actt-a----ga------ Chinese pangolin tac-------aggtaa----ga------ Dog tag-------actt-g----ga------ Hawaiian monk seal tagtg--atcactt------ta------ Hedgehog ttgtgtcattacttca----ga------ Elephant --g-------attt-a----aagcgaac Tenrec tcg-------attt-a----gagagaac Pika ============================ Zebrafish ============================ X. tropicalis ============================ Opossum ============================ Chicken ============================ Shrew ============================ Inserts between block 23 and 24 in window B D Pig 6bp B D Dolphin 6bp B D Cow 3bp B D Sheep 3bp B D Horse 6bp B D Chinese pangolin 6bp B D Dog 6bp B D Hawaiian monk seal 6bp B D Hedgehog 6bp Alignment block 24 of 317 in window, 56741469 - 56741698, 230 bps B D Mouse gaaagtgaaaaat--ccccagg-taggcagaaccacacagcatctgtggtagctaagctgaagtcgcggg B D Rat gaacgtgaaaa-t--cctcagg-taggcggaacgaca--gcaactctggtagctaaactg--gtcacagg GCF_003668045 gaaggtgaaaa-t--ccacagg-taggcagaaccata--gaatctctggtagctaaa-tgaaatcaccgg Beaver gaaagtgacga-t--tcagaag-taggcagaaccgta--gggcttctgatagctaaactgaacttatggg B D Squirrel gaaagtgaaaa-t--tcaaata-taggcagaatccca--gggcccctgatagctaaatagaagtcaccag B D Guinea pig gaaaatgaaaa-t--ttagaag-taggcagatccgca--gggcccctggtatctaaacagaagtctcagg B D Rabbit gaaagtgaaaa-ttctcagaag-tgggcagaagcgca--gggcctgttgtagcggattggaagacgcggg B D Human aaaagtgaaaa-t--tcagaag-taggcagaacgaca--gggcctctgg-agcttaatggaagacgaggg B D Chimp aaaagtgaaaa-t--tcagaag-taggcagaaccaca--gggcctctggcagcttaacggaagacgaggg B D Bonobo aaaagtgaaaa-t--tcagaag-taggcagaaccaca--gggcctctggcagcttaacggaagacgaggg B D Gorilla aaaagtgaaaa-t--tcagaag-taggcagaaccaca--gggcctctgggagcttaatggaagacgaggg B D Rhesus aaaagtgaaaa-t--tcagaag-taggcagaactgca--gggcctctgggagcttgacggaagacgaggg B D Marmoset aaaagtgaaaa-t--tcagaag-taggcagaaccaaa--ggacctctgggagcttaatagaa---gaggg B D Tarsier aaaagctaaaa-c--tcagaag-taggcacaaccgca--gggctcctggtgactaaagggaagacgcaga B D Bushbaby aaaactgaaaa-t--ttgaaag-taggcagaactgca--gggcctctgatatttaaatgcaagaagtggg B D Tree shrew ggaagtgaaaa-t--gtagaag-tagccagaacagct--gggcctctggtagctgaatagaagacgtggg B D Malayan flying lemur gaaagtgaaaa-a--tcagaag-t----agaactgca--gggcatctggtagataaatagaagaggcggg B D Pig gaaggtgaaaa-t--tcagaagtt-ggctgaacagca--gggcctctggcagctggtcagaagacacaag B D Dolphin gaaagtgaaaa-t--tcagaaggcaggctgaactgca--gggcctctggcagctagtcagaagacgtgag B D Cow ---------aa-t--tagaaaggtaggcttaactgca--gggcctctggcagctagtgagaagatgtggg B D Sheep ---------aa-t--taggaaggcaggcttaactgca--gggcctctggcagctagtg---agatgaggg B D Horse gaaagtgaaaa-t--tcagaag-cagacttaaccgcg--aggcctctggtagccaaacggcagacgcggg B D Chinese pangolin gaaagtgaaaa-a--tcagaag-taggctgaaacgca--aggcctctgataactaaacggaagatgcggg B D Dog gaaagtgaaaa-a--tcagaag-taggctgattctca--gggcctctggtagctaaacagaagatggggg B D Hawaiian monk seal gaaagtgaaaa-t--tcagaag-taggttgactctca--gggcctctggtagctaaacggaagacggggg B D Hedgehog -gaaatgaaaa-a--tcagaag-taggaagaaacgcg--gggcctcgggtaactaaagggaagacgcggg B D Shrew gagagtgaaaa-t--tcagcag-ttggcaggttcacg--tcgcttctggaagctaaatgaaat-cgcggg B D Elephant gaaagtgaaaa-t--gcagaac-tgggcagaacctca--gggcgtctagtagcagaaaggaagatgcaag B D Tenrec agaagtgaaat-t--gcagaag-taggcagaatctca--gcacctctagtagctacatggaagatttggg B D Pika ====================================================================== B D Zebrafish ====================================================================== B D X. tropicalis ====================================================================== B D Opossum ====================================================================== B D Chicken ====================================================================== Mouse gaattac--------ata----c--agatg----ctcagaggcagtgtcagcgggtacc-tccttggggc Rat gaattat--------acg----c--agatg----ctcagaggcagtctcaaa---------ccttggggc GCF_003668045 gaattgc--------ata----c--agatg----ctcagttgcgttgtctac------c-ttcttgggac Beaver aattaac--------atg----t--aggt----------------------c------------------ Squirrel -aattac--------ata----c--atatgtagtctc-----cgttgtcaac------c-ttcttgggac Guinea pig -agttac--------ata----c--aagcg------cagcctcgctgtccat------c-tctttgagac Rabbit -gatcac--------aca----c--atgtg------ccgtcttgatggcc-c------c-cccttgggac Human -aattac--------atc----c--atgtg------cagcgtcggtgtccac------t-gtcttgggac Chimp -aattac--------atc----c--atgtg------cagcgtcggtgtccac------t-gtcttgggac Bonobo -aattac--------atc----c--atgtg------cagcgtcggtgtccac------t-gtcttgggac Gorilla -aattac--------atc----c--atgtg------cagcgtcggtgtccac------t-gtcttgggac Rhesus -aattac--------atc----c--atgtg------cagcgtcggtgtccac------t-gtcttgggac Marmoset -aattac--------atc----c--atgtg------cagcatcagtgtccac------t-ttcttgagac Tarsier -aattac--------ata----ccgacgta------cagcgtcggtgtccgc------t-ttcctgggac Bushbaby -aattac--------atc----t--aggtg------cagcgt-agtgtccac------t-ttcctaagaa Tree shrew -aattac--------gta----c--atgtg------cagcctcaatgtccag------c-ttcttgagac Malayan flying lemur -aattgt--------ata----c------g------cagcctcggtgtccgc------c-ttcttgggaa Pig -aatgga--------atataata--atgtg------caagttaggtactcac------c-ttcctggaat Dolphin -agtcac--------ata----c--atgtg------caggctcagtgtt-ac------c-ttcttggaac Cow -aatcac--------ata----c--atgtg------caggttcggtgttcac------g-ttcttaggaa Sheep -aatcac--------atacatgc--atgtg------caggttcggtgttcac------g-ttcttaggaa Horse -agttac--------ata----c--acgtg------cgggctggaggttcac------c-ttcttgagac Chinese pangolin -tattac--------ttg----t--atcgg------c---------gttcac----------cttgggac Dog -aattgc--------atg----t--aggtg------caggctcgatgttcaa------ctttcttgggac Hawaiian monk seal -aattac--------ata----a--atgtg------caggctcggtgttcaa------ctttcttgggac Hedgehog -g-------------ata----t--atgtg------ctgatt---ctttcac------t-at-taagtga Shrew -aggcacatacacacata----c--atgtg------caggctgggtgttcac------t-ttcttagaaa Elephant -aattac--------ata----c--atatg------tgggatcggtgttcac------a-ttctttgaac Tenrec -aattac--------ata----c--atgtg------cag-------gctcac------t-ttcgttgaac Pika ====================================================================== Zebrafish ====================================================================== X. tropicalis ====================================================================== Opossum ====================================================================== Chicken ====================================================================== Mouse t-----------gactttca--tatttaaaat--caaac-ctttcaaggtggctctatggt--gt-tgag Rat t-----------gtctttca--tatttaaaac--aaaac-cttgcaaggtggttcactggt--gt-taag GCF_003668045 t-----------gtctttca--tattaaaaac--aaaat-ctttcaaggtggctcactggt--gt-taag Beaver -------------tctttca--tctttaaaca--aaact-cttttgcgctggctca-------------- Squirrel taa---------gactgaca--catataagta--agacc-cttttgctatggctcactggt--tt-ggag Guinea pig cag-------atctttttca--tgtttaaaca--aaact-cctttgtgatggttcactgat--tt-ggag Rabbit caa---------gtcttttggctgtttcaaca--aagcc-ccttcgcggtggcttccagct--gt-aggg Human taa-------gtctctttca--tatttaaaca--aaact-ctttcgagagggctcgctggt--tt-ggag Chimp taa-------gtctctttca--tatttaaaca--aaact-ctttcgagagggctcgctggt--tt-ggag Bonobo taa-------gtctctttca--tatttaaaca--aaact-ctttcgagagggctcgctggt--tt-ggag Gorilla taa-------gtctctttca--tatttaaaca--aaact-ctttcgagagggctcgctggt--tt-ggag Rhesus taa-------gtctctttta--catttaaaca--aaact-ctttcgagggggctcactggt--tt-ggag Marmoset tag-------atctctttta--tatacaaaca--aaact-ctctagaaa-------tcggt--tt-ggag Tarsier t---------gtctcttttg--tatttaaacaccagcct-ttttcgaaatgactcactggt--tt-ggag Bushbaby taa-------gcatctttca--tatttaaaca--aaacc-ctttcgaagtggctcactggt--at-ggag Tree shrew taa-------gcctccttcg--tgcttaaacg--aaactcccttcgccgaagcacactggt--gg-ga-- Malayan flying lemur taa-------gtctctttca--tatttaaaca--aaacccccttcgcagtggctcactggt--at-gaat Pig caa-------gtc--tttca--tatttaaaca--aaagc-cctttacagtggcttactgct--gg-ggta Dolphin caa-------gtctttctca--tatttaaaca--aaagc-cctttgcagtggttcactggt--gg-ggga Cow cga-------gtctgtttca--tatttaaaca--caagc-cctttgcagtgattcactggt--gg-ggga Sheep cga-------gtctgtttca--tatttaaaca--caagc-cctttgcagtggttcattggt--gg-ggga Horse caa-------gtctctttca--tatttaaaca--aaact-cctttgcagccgttcaatggt--agcgggg Chinese pangolin caa-------gtgtctttca--tatttaaaca--aaacc-cctttgcagtggttcattggt--aa-gggg Dog caa--------tctctttca-----ttaaata--agacc-cttttgctgcggttcactggttggg-gggg Hawaiian monk seal caa-------gtctctttca-----ttaaaca--aaccc-cttttgctgcggttcgctggt--ga-gggg Hedgehog c---------gccccctccccctacc---------------ccttgcgggggttcataggt--gt-cccc Shrew ccagaaaccagtcttattcacacacttaagca--aa-----tccttcacgggcggagagaa--tt-cacc Elephant cag----gtcgtcgctttca--tatttaaaca--aaacc-cctt--atgtggctcac------gt-gggg Tenrec caa-------gtcccttgca--tatttaaa--------------------agct----------t-ggga Pika ====================================================================== Zebrafish ====================================================================== X. tropicalis ====================================================================== Opossum ====================================================================== Chicken ====================================================================== Mouse a-accctggcaaat----tcttacacacggaaa---ccaggaccctg-------ggtga----gtgatgc Rat a-accttggcaaat----tctaacacacggaaa---ccacgaccctgcgttctgggtga----gtgatgt GCF_003668045 a-actctggcaaat----tttaacacagagaac---ccaggaccctgccttctgggtga----atgggga Beaver -----ctggcaaac----tttggcaatgaggac---ccagggccctgcgctttggctaa----gcgcggc Squirrel g-gccctggcaaat----tcttacaccaggaac---tcactgccctgcaccatagctga----ataccgc Guinea pig a-acttctgcaaac----tctggcagcatggat---ccctagtcctgcatggtggttga----gtgtcgc Rabbit gcaccccggcctgc----gtaggtacggggcag---ccgcggcccagcacgc--ggcaa----tccgtgg Human a-accctcacaaac----gctgccaccgagggc---caggggcccaggacagtggctga----atgtggc Chimp a-accctcacaaac----gctgccaccgagggc---caggggcccaggacagtggctga----atgtggc Bonobo a-accctcacaaac----gctgccaccgagggc---caggggcccaggacagtggctga----atgtggc Gorilla a-accctcacaaac----gctgccaccgagggc---caggggcccaggacagtggctga----atgtggc Rhesus a-acccacgcaaac----tctggcaccgagagc---caggggcccaggacagtggctga----atgtgga Marmoset a-accctcacaaac----cctggcaccaaggcc---cagcggcccaggacagtggctga----atgtggc Tarsier a-acccctgcaaac----gctgtcaccg-ggac---cggcggcccagcacagtgactga----gtgaggc Bushbaby a-atccctgcaaac----gctgaccccaaggcc---cagtggcccagtacaggggctga----------- Tree shrew ---------------------gaaacctgacac---tagcggcccagcagggctgcgga----gccctgc Malayan flying lemur a---cccggcgaac----agtggcaccgagaac---cggcggcccggcacaggggctgg----gcacggc Pig a-agca-gg-gaat----gttggcgcaaagggc---cattggatcagcaacatggctgg----gcacagc Dolphin a-aacc-ggagaacctcggccggcaccaagggc---cagtggaccagcaacacggttga----gccctgc Cow a-aacc-ggcgaacgtc-gttggcaccaagggc---cagcgaaccagcaacatggctga----gctctcc Sheep a-aacc-ggcgaatgtc-gttggcaccaagggc---cagcgaaccagcaacatg---------------- Horse a-aacc-ggcaaac----gttggcatagaggaccagcggcaggctcgc----tggctga----gcgc--- Chinese pangolin a-aacc-ggcaaac----attagcacggaggac---cggcagacctgcaccgtggctga----g------ Dog a-aacc-ggcaaac----cgtggcatcaagtac---cagcagtccagcaccgaagctga----gcgcagt Hawaiian monk seal a-agac-ggcaaac----cttggcatcaagtac---cagcagaccagcaacccggctga----gcgcagt Hedgehog a-accg-ggcaagc----gtgggacccgcggac-----------cagcattcg---tgg----gcactgc Shrew a-gac--------------ttggacacgaggac---tatggg--cagcaccaag-ctga----gcacagc Elephant g-----tggcaaac----gcccaggccaaggac-cagagaggccctgcactgtgattga----gcgc--- Tenrec g-----------------------------------aagaggcccagcctcatggctgagcttgctt--- Pika ====================================================================== Zebrafish ====================================================================== X. tropicalis ====================================================================== Opossum ====================================================================== Chicken ====================================================================== Mouse aagg-------gggtgg Rat acaa-------ggggtg GCF_003668045 aagac-----cgggtgg Beaver ggag-------ggc--- Squirrel ggag-------gggtgg Guinea pig agaa-------ggctgg Rabbit aggt-------gg---- Human ag--------------- Chimp ag--------------- Bonobo ag--------------- Gorilla ag--------------- Rhesus gg--------------- Marmoset ag--------------- Tarsier ga--------------- Bushbaby -g--------------- Tree shrew gg--------------- Malayan flying lemur gg--------------- Pig actgcaatg-------- Dolphin ggcgcgctgg------- Cow agcgcactgg------- Sheep ----------------- Horse ----------------- Chinese pangolin ----------------- Dog ggcgcgcag-------- Hawaiian monk seal ggcgcgctg-------- Hedgehog gctg------------- Shrew agcg------------- Elephant ----------------- Tenrec ----------------- Pika ================= Zebrafish ================= X. tropicalis ================= Opossum ================= Chicken ================= Inserts between block 24 and 25 in window B D Squirrel 146bp B D Guinea pig 2bp B D Sheep 21bp B D Hedgehog 5bp B D Shrew 5bp Alignment block 25 of 317 in window, 56741699 - 56741713, 15 bps B D Mouse gatgggatggacg---tg B D Rat ggtgggatgatcg---tg GCF_003668045 ggtggggtgaa-----tg Beaver ----------------tg B D Guinea pig tgtgtgctgag-----tg B D Rabbit --tgcggtgcg-----ct B D Human -----------agccttg B D Chimp -----------agccttg B D Bonobo -----------agccttg B D Gorilla -----------agccttg B D Rhesus -----------agccttg B D Marmoset -----------agccttg B D Tarsier -----------ggcgctg B D Bushbaby -----------agcc--g B D Tree shrew -----------ggcgctg B D Malayan flying lemur -----------agcgctg B D Dolphin ------------cttccg B D Cow ------------gttccg B D Elephant ------ggtggagcacag B D Tenrec ------ggtggagcgtgg B D Sheep ================== B D Hawaiian monk seal ------------------ B D Dog ------------------ B D Horse ------------------ B D Hedgehog ================== B D Pika ================== B D Zebrafish ================== B D X. tropicalis ================== B D Opossum ================== B D Chicken ================== B D Shrew ================== B D Squirrel ================== B D Pig ------------------ B D Chinese pangolin ------------------ Inserts between block 25 and 26 in window B D Dolphin 2bp B D Cow 191bp Alignment block 26 of 317 in window, 56741714 - 56741771, 58 bps B D Mouse gccactgccaccagcgctccggggat-----------------caaccctccttccccgtggac-----g B D Rat gcctctgtcaccggggctccaggtat-----------------cagccctgcttctccgcggag-----g GCF_003668045 gcctctgccatcagcgctccaggtat-----------------cagcaccccct---------------- Beaver gcctctaagatgagctctccacttac-----------------cagctgtcggt--agactggg-----g B D Guinea pig ggtccttcgatccacat--------------------------------------------ggc-----g B D Rabbit cgcttcaccgcgtgcggccaacttct-----------------ctgcacaccgt-------gcg-----g B D Human ggctccgtagtgagtgccccacgcac-----------------tggcaattggtcgactt-ggg-----g B D Chimp ggctccgtagtgagtgccccacgcac-----------------tggcaattggtcgactt-ggg-----g B D Bonobo ggctccgtagtgagtgccccacgcac-----------------tggcaattggtcgactt-ggg-----g B D Gorilla ggctccatagtgagtgccccacgcac-----------------tggcaatcggtcgactt-ggg-----g B D Rhesus ggctccatagtgagtgccccacgcac-----------------tggcaatcggtcgactt-ggg-----g B D Marmoset gactccgtagtgagtgccccaggcac-----------------tggcaatcaatggactt-ggg-----g B D Tarsier ggctacgcgctggg---------------------------------------tcgactt-ggggctgcg B D Bushbaby ggctctggaatgagcgtcctacgcac-----------------ccgcaataacctgacct-ggg-----g B D Tree shrew gcctctgagctgaatgcccagcacgt-----------------ccaccatcggtccccgc-tga-----g B D Malayan flying lemur gcctcggtggctagcgcctcacgcac-----------------cggccgtcggtggacg--tgg-----g B D Pig gcctctgcagagggtgccacgtgcac-----------------ttgcaattggtc--------------- B D Dolphin ---------gagagtgccccatgcgc-----------------tggcaattggtc--------------- B D Sheep ggttccgcagagagtgccccgtgc-c-----------------tgtcaa-tggtt--------------- B D Horse ----------acggtgttccacgcac--------------cgatggccgtgcgct--------------- B D Chinese pangolin -----------cggtg-cccatgcacaggcagtcagtcgacgctggctttgcact--------------- B D Dog gcctccaaggagagtgcctcgagc-caggcaatc-ttcgatgttggctgggagc---------------- B D Hawaiian monk seal gcctccagggagagtgcctcaagcacaggcaatc-gtcgacgttggctgtgagct--------------- B D Hedgehog acctcagc---gacc-ctccgtgtg-------------------gaccgtgcgct--------------- B D Shrew gcttcagcagagaac-tattgtacgc----------------tcgtccttcggct--------------- B D Elephant gcctcagtggtgaacccaccactcat-----------------ccgccatcagtcgacgt-tgg-----g B D Tenrec gtctctctggtgagcacccctcttgc-----------------ccactgtcagtcgacgt-tgg-----g B D Pika ====================================================================== B D Zebrafish ====================================================================== B D X. tropicalis ====================================================================== B D Cow ====================================================================== B D Opossum ====================================================================== B D Chicken ====================================================================== B D Squirrel ====================================================================== Mouse tc-----ctgtgctc-- Rat tc-----ttgtgttc-- GCF_003668045 tc-----ctgcgctc-- Beaver tt-----ctgcgctc-- Guinea pig tt-----ctgggcaa-- Rabbit tc-----c----ctg-- Human ct-----gtgcgc---- Chimp ct-----gtgcgc---- Bonobo ct-----gtgcgc---- Gorilla ct-----gtgcgc---- Rhesus cg-----gtgcgt---- Marmoset ca-----gtgccc---- Tarsier ctcgcgcgcgcgc---- Bushbaby ct-----gtgcgc---- Tree shrew cc-----gtgcgc---- Malayan flying lemur cc---ttgagcgc---- Pig ----------------- Dolphin ----------------- Sheep ----------------- Horse ----------------- Chinese pangolin ----------------- Dog ----------------- Hawaiian monk seal ----------------- Hedgehog ----------------- Shrew ----------------- Elephant cg-----gtgcga--tc Tenrec ta-----ttgtgc--tt Pika ================= Zebrafish ================= X. tropicalis ================= Cow ================= Opossum ================= Chicken ================= Squirrel ================= Inserts between block 26 and 27 in window B D Human 1bp B D Chimp 1bp B D Bonobo 1bp B D Gorilla 1bp B D Rhesus 1bp B D Marmoset 1bp B D Tarsier 1bp B D Bushbaby 1bp B D Tree shrew 2bp B D Malayan flying lemur 24bp Alignment block 27 of 317 in window, 56741772 - 56741811, 40 bps B D Mouse ctctttagt--------ct--ggttttttaatttttttttcctcactgca B D Rat ---tttagt--------ct--gcttttcaaagttctt---ccttccagca GCF_003668045 -cctttagt--------cttggagtttaaaaattctc------cacaact Beaver -tctttggc--------cgc-gtgtgattaaattctc----cgctcacgt B D Guinea pig --cttcaac--------cgcaggtgcctgagtttccc---cggcacagga B D Rabbit -ccttgagc--------cc--g---------------------------- B D Human agcgttagc--------cgc-ctgtggttcagttccc----cgcacacgg B D Chimp agcgttagc--------cgc-ctgtggttcagttccc----cgcacacgg B D Bonobo agcgttagc--------cgc-ctgtggttcagttccc----cgcacacgg B D Gorilla agcgttagc--------cgc-ctgtggttcagttccc----cgcacacgc B D Rhesus cgcgttagc--------cgc-ctgtggttcagttccc----tgcacacgg B D Marmoset cgcgttagc--------ctc-ctgtggttcagttccc----ggcacacgg B D Tarsier cgcgctagc--------ggc-gtgtggttaagttccc----ggcacagcg B D Bushbaby cgcgttagc--------ggt-gcgtggctccattctc----cgcatgctg B D Tree shrew -gctttcgc--------tgc-gtgtggttactttctc----cgcacaccg B D Pig gacattggct------gtgc--cttgctttag------------------ B D Dolphin gacgttg----------tgc-gcttgctttag------------------ B D Sheep gaagttggct------ttgc-gctcgctgtag------------------ B D Horse cgctttggc--------cgc-gtgtggttacactctc----tgca----- B D Chinese pangolin cgcattagc--------cat-gtgtggttatgttctt----tgca----- B D Dog ------------------------tgcttaacttctc----cgcg----- B D Hawaiian monk seal agctttagc--------cgc-gtgtgcttaagttctc----cgca----- B D Hedgehog cgctttagccggctgaa----aataactttaagtaac----ttaa----- B D Shrew caccttcgaccgcttggtgc-actagcttttagccac----tcaa----- B D Elephant ------------------gc-ttgtagttaagttctc----ggtaca--- B D Tenrec ------------------gc-ttgtagttaatttctg----ggtaca--- B D Pika ================================================== B D Zebrafish ================================================== B D X. tropicalis ================================================== B D Cow ================================================== B D Opossum ================================================== B D Chicken ================================================== B D Squirrel ================================================== B D Malayan flying lemur ================================================== Inserts between block 27 and 28 in window B D Pig 17bp B D Dolphin 18bp B D Sheep 13bp B D Tenrec 5bp Alignment block 28 of 317 in window, 56741812 - 56741812, 1 bps B D Mouse c B D Rat t GCF_003668045 g Beaver t B D Squirrel c B D Guinea pig t B D Rabbit t B D Human c B D Chimp c B D Bonobo c B D Gorilla c B D Rhesus c B D Marmoset c B D Tarsier c B D Bushbaby t B D Tree shrew c B D Horse c B D Chinese pangolin c B D Dog a B D Hawaiian monk seal t B D Hedgehog a B D Shrew g B D Tenrec c B D Sheep = B D Pika = B D Zebrafish = B D X. tropicalis = B D Cow = B D Opossum = B D Chicken = B D Elephant - B D Pig = B D Dolphin = B D Malayan flying lemur = Inserts between block 28 and 29 in window B D Horse 5bp B D Chinese pangolin 5bp B D Dog 7bp B D Hawaiian monk seal 7bp B D Hedgehog 22bp B D Shrew 24bp Alignment block 29 of 317 in window, 56741813 - 56741815, 3 bps B D Mouse ctg B D Rat ccg GCF_003668045 gcg Beaver gcg B D Squirrel gag B D Guinea pig gcg B D Rabbit atg B D Human gtg B D Chimp gtg B D Bonobo gtg B D Gorilla gag B D Rhesus gtg B D Marmoset gtg B D Tarsier gtg B D Bushbaby gtg B D Tree shrew gca B D Cow ggc B D Sheep --c B D Horse gtg B D Chinese pangolin gcg B D Dog gcg B D Hawaiian monk seal gcg B D Hedgehog tga B D Shrew cct B D Tenrec atg B D Pika === B D Zebrafish === B D X. tropicalis === B D Opossum === B D Chicken === B D Elephant --- B D Pig === B D Dolphin === B D Malayan flying lemur === Inserts between block 29 and 30 in window B D Tree shrew 5bp Alignment block 30 of 317 in window, 56741816 - 56741874, 59 bps B D Mouse gcct-ctgctaggatcctg---------------cttgact---gag--------gtttag-cc------ B D Rat gctt-ctgcgaggatcctg---------------cttggcc---aag--------gtttag-cc------ GCF_003668045 gtcc-cagccagcatcctg---------------cttgact---gag--------gtttag-cc------ Beaver cttc-ttgcctggaacctg---------------tgtgact---gag--------ggctgg-cc------ B D Squirrel atct-ctgcttggagcccaagttgacactgcgctcctggat---gagttcagtgtgctaag-tc------ B D Guinea pig gcctcctgcctagatcctg---------------cgttgct---aag--------cgctgg-ct------ B D Rabbit gcct-cagcttgga-caag---------------cctggc----aag--------gggcgg-ccgcgcca B D Human gccc-gtgcctcgagcctg---------------tgtggct---agt--------ggttgg-cc------ B D Chimp gccc-gtgcctcgagcctg---------------tgtggct---agt--------ggttgg-cc------ B D Bonobo gccc-gtgcctcgagcctg---------------tgtggct---agt--------ggttgg-cc------ B D Gorilla gccc-gtgcctcgagcctg---------------tgtggct---agt--------ggttgg-cc------ B D Rhesus gccc-ctgcctcgagcctg---------------tgtggct---agt--------ggttag-cc------ B D Marmoset gccc-ctaccttgagcctg---------------cgtggct---agt--------ggttgg-cc------ B D Tarsier gctc-gtgcctcgggcctg---------------cgtggct---agg--------ggttgg-cc------ B D Bushbaby accc--cgccctcagcctg---------------agtggcta--agg--------ggctgg-ct------ B D Tree shrew gcta-ctgcctcgagcctg---------------ctcgact---aag--------ggttgaccc------ B D Malayan flying lemur gccc-ctgccccaaggctg---------------cgtgcct---gag--------ggttggccc------ B D Pig ----------------cta------------------ggct---atg--------gtttga-cc------ B D Dolphin -----ctgcttggagtcta------------------ggct---agg--------gtttta-cc------ B D Cow ctcc-atctctggctcct--------------------gct---cgt--------gtttag-tc------ B D Sheep gttc-ctgcttggagccta------------------ggct---aat--------gtttga-cc------ B D Horse gccc-gcgcgtcgaggatg---------------cgtggct---aag--------ctttgg-ct------ B D Chinese pangolin gtca-ctacctggagcctg---------------cgtggct---aac--------gtttgg-ct------ B D Dog gcca-cagcctggagcctg---------------cgtggct---agg--------gtttgc-ct------ B D Hawaiian monk seal gcca-catcctggagtctg---------------cgtggct---aag--------gtttgg-cc------ B D Hedgehog gccc-ctgcctggaccgtg---------------agctgct---ggg--------gtttgg-gc------ B D Shrew ggcc-ctgctgggagccca---------------aggggct---atg--------gttt-g-ac------ B D Elephant -----------ttagcctg---------------cttggc----gag--------ggttcg-cc------ B D Tenrec gtcc-ctgccttgaacctg---------------cgtggctggtgag--------g-------------- B D Pika ====================================================================== B D Zebrafish ====================================================================== B D X. tropicalis ====================================================================== B D Opossum ====================================================================== B D Chicken ====================================================================== Mouse -cctc------------------actgct--ggac----------------ta------------ac-c- Rat -tctc------------------acgggg--gcac----------------ta------------ac-c- GCF_003668045 -tctg------------------acggag--agac----------------ta------------at-c- Beaver -ctgc------------------gctcct--ggac----------------ta------------at-c- Squirrel ----a------------------gccgca--agag----------------gg------------gc-c- Guinea pig --tgc------------------gctcca--ggac----------------tg------------gc-c- Rabbit gaccc------------------gcagcc--agag----------------gg------------gt-c- Human --ggt------------------ccacct--ggac----------------tg--------gggggt-c- Chimp --ggt------------------ccacct--ggac----------------tg--------gggggt-c- Bonobo --ggt------------------ccacct--ggac----------------tg--------gggggt-c- Gorilla --ggt------------------ccacct--ggac----------------tg--------gggggt-c- Rhesus --ggt------------------ccacct--gtac----------------cg--------gggggc-c- Marmoset --agt------------------ccacctgggggg----------------tg--------gggggc-t- Tarsier --cgc------------------gctcct--ggac----------------------------------- Bushbaby --ggc------------------gctccc--agacgagcccacggtgggggcg--------gggggg-c- Tree shrew --cac------------------gatcct--agacgagcccaa--------tg--------gaggga-c- Malayan flying lemur --caa------------------gctcct--ggacgatcccac--------ggg---gcctgggggg-g- Pig -cgccctcttcgcctcccctgcagctcct--ggat----------------ga------------ac-t- Dolphin -ccgt------------------gctcct--ggat----------------ga------------ac-t- Cow -gctc-----------------agtttcg--tgtc----------------cg------------ac-t- Sheep -ccgc------------------gttcct--ggat----------------ga------------ac-t- Horse -ccac------------------gctcct--gcat----------------ga------------ac-c- Chinese pangolin -ccac------------------gctcct--agat----------------ga------------acac- Dog -ccgc------------------gctctc--gaat----------------ga------------ac-c- Hawaiian monk seal -ccgc------------------gctcct--ggat----------------ga------------ac-c- Hedgehog -ctga------------------gcttct--ggat----------------ga------------gt-c- Shrew -ccga------------------gtcttt--gatt----------------aa------------at-ca Elephant -ctga------------------gctccc--ggat----------------gaacttagtggggggc-c- Tenrec -ttgc------------------gctctc--agat----------------gcacctactgggggac-c- Pika ====================================================================== Zebrafish ====================================================================== X. tropicalis ====================================================================== Opossum ====================================================================== Chicken ====================================================================== Mouse ---act-t Rat ---att-t GCF_003668045 ---atc-t Beaver ---att-- Squirrel ---tcc-t Guinea pig ---act-g Rabbit ---tcc-c Human ---gcc-g Chimp ---gcc-g Bonobo ---gcc-g Gorilla ---gcc-g Rhesus ---acc-g Marmoset ---gcc-g Tarsier -------- Bushbaby ---gcc-g Tree shrew ---gcc-g Malayan flying lemur ---gcg-g Pig ---ccc-- Dolphin ---ccc-- Cow ---ctt-- Sheep ---ctc-- Horse ---ccct- Chinese pangolin ---aaca- Dog ---cacc- Hawaiian monk seal ---tacc- Hedgehog -------- Shrew tct----- Elephant ---gcc-g Tenrec ---aca-g Pika ======== Zebrafish ======== X. tropicalis ======== Opossum ======== Chicken ======== Inserts between block 30 and 31 in window B D Pig 23bp B D Dolphin 28bp B D Cow 2bp B D Sheep 247bp B D Horse 27bp B D Chinese pangolin 27bp B D Dog 30bp B D Hawaiian monk seal 35bp B D Hedgehog 11bp B D Shrew 15bp Alignment block 31 of 317 in window, 56741875 - 56741983, 109 bps B D Mouse cg-g-g---------------------------------cgg--ggtacgggaaggag-t---ctct--- B D Rat cg-g-t---------------------------------cgg--ggtacgggaaggag-t---atcc--- GCF_003668045 ca-g-g---------------------------------cag--ggtacaggaacggg-t---ctcc--- Beaver ----------------------------------------gg--gacccgcggacggt-t---ctct--- B D Squirrel tg-g-c---------------------------------ctt--aacac--------------ctctggc B D Guinea pig ga-g-gtccgcgcgaagctggctatagagtggacctccttgg--gcctcagtgggcgt-c---atcc--- B D Rabbit gg-g-c---------------------------------cgg--aacaacgg-------------cc--- B D Human ca-g-g---------------------------------aagctggcggtaggaggaa-c---ctcc--- B D Chimp ca-g-g---------------------------------aagctggcggtaggaggaa-c---ctcc--- B D Bonobo ca-g-g---------------------------------aagctggcggtaggaggaa-c---ctcc--- B D Gorilla ca-g-g---------------------------------aagctggcggtaggaggaa-c---ctcc--- B D Rhesus ca-g-g---------------------------------aagttggcggtaggaggaa-c---ctcc--- B D Marmoset cg-g-g---------------------------------aagctggcggtaggaggag-c---ctcc--- B D Tarsier -----g---------------------------------agcccactggaaggacgag-cccactcc--- B D Bushbaby cg-g-g---------------------------------aaacctgcggctgcaggac-c-ggcctc--- B D Tree shrew ca-g-g---------------------------------aagtccgattccggagggg-c---ctct--- B D Malayan flying lemur ga-g-g---------------------------------gggt-cgccgcgggacggg------tct--- B D Pig cg-g-g---------------------------------tgg--------ggaagg-------------- B D Dolphin ag-g-c---------------------------------cgg--------gggagagg-t---ctcc-ac B D Cow cg-a-c---------------------------------c------------------------------ B D Horse gg-g-g---------------------------------cag--------gagagggg-t---ctcc-ac B D Chinese pangolin gg-g-c---------------------------------agg--------gggaagaa-t---ctcc-at B D Dog gg-g-g---------------------------------cag--------cagagggg-t---ctcc-ac B D Hawaiian monk seal gg-a-g---------------------------------cag--------gagagggg-t---ctcc-ac B D Hedgehog ggta-c---------------------------------ccg--------ggaatggg-t---ctcc-tc B D Shrew g--a-a---------------------------------tgg--------ggaaggggct---ctct-ac B D Elephant cg-g-g---------------------------------aagccgagcgcaggagggc-c---cct---- B D Tenrec tg-gag---------------------------------aagccactgcccggacatc-c---cccc--- B D Sheep ====================================================================== B D Pika ====================================================================== B D Zebrafish ====================================================================== B D X. tropicalis ====================================================================== B D Opossum ====================================================================== B D Chicken ====================================================================== Mouse -tgtcctt--------------------------------ac--a------------------------- Rat -tgtcctt--------------------------------ac--a------------------------- GCF_003668045 ttgtcctta-------------------------------ac--a------------------------- Beaver ttgtcttta-------------------------------ac--a------------------------- Squirrel tcggcctc--------------------------------ac--a------------------------- Guinea pig tgggccttc-------------------------------gc--a------------------------- Rabbit ----------------------------------------gc--g------------------------- Human ctggccttaaca---------------------gtggccccc--a------------------------- Chimp ctggccttaaca---------------------gtggccccc--a------------------------- Bonobo ctggccttaaca---------------------gtggccccc--a------------------------- Gorilla ctggccttaaca---------------------gtggccccc--a------------------------- Rhesus ctgaccttaaca---------------------gtggccccc--a------------------------- Marmoset ctggccttaaca---------------------gtggccctc--a------------------------- Tarsier ctggccttaaca---------------------gtggctccc--a------------------------- Bushbaby cccactttaaca---------------------acagccccc--c------------------------- Tree shrew ctggccttaata---------------------gtggtcccc--a------------------------- Malayan flying lemur ctggccttagca---------------------gcagccccc--a------------------------- Pig -----------------------gtccagt---gttcccccc--a----tccccaccctgggtaacaacg Dolphin ctggtggaaacaaaggcctccatttctggcttggtctcgcct--aattctcctcgtc------------- Cow -----------------------ctttggctaggtctcccct--a----ttctcatc------------- Horse ctggcggtaaca---------------------gtggcctcc--a------------------------- Chinese pangolin ccggaggtaaca---------------------gggtcctcc--a------------------------- Dog ctggcggtcaca---------------------gtggcctcc--a------------------------- Hawaiian monk seal ctggcggtcaca---------------------gtggcctcc--a------------------------- Hedgehog ctgacgacaaca---------------------gtggtctcc--a------------------------- Shrew ctagctgttaca---------------------at-gcatcc--a------------------------- Elephant --------------------------------------------g------------------------- Tenrec ---------------------------------tccgcccccaag------------------------- Sheep ====================================================================== Pika ====================================================================== Zebrafish ====================================================================== X. tropicalis ====================================================================== Opossum ====================================================================== Chicken ====================================================================== Mouse -------cctcaag---cgcc-----------------tcctc--------cact--------------- Rat -------ccccaaggagagtc-----------------tccta--------c------------------ GCF_003668045 -------cctcaag---cttt-----------------tctcc--------ctttgcctctggtctttct Beaver -------cctcgagatcggtc-----------------tcacc--------g--------caacctcctg Squirrel -------gctacccactggtc-----------------tctct--------g------------------ Guinea pig -------cctctggcccggcc-----------------tctgc--------t--------cagcctcctg Rabbit -------cctctggctcggcc-----------------tgccc--------g--------caagctccag Human -------cctgtggctcgggc-----------------tcccc--------g--------caacctcctg Chimp -------cctgtggctcgggc-----------------tcccc--------g--------caacctcctg Bonobo -------cctgtggctcgggc-----------------tcccc--------g--------caacctcctg Gorilla -------cctgtggctcgggc-----------------tcccc--------g--------c-acctcctg Rhesus -------cctgttgcttgggc-----------------tcccc--------g--------caacgtcctg Marmoset -------cctgtggctcgggc-----------------tcccc--------g--------taacctcctg Tarsier -------cct---gatcggcc-----------------tctcc--------g--------aaa---cctg Bushbaby -------accttggctctgct-----------------gccag--------g--------ccacctccag Tree shrew -------cttctagtttggca----------------gaccct--------g---------aacctc-tg Malayan flying lemur -------cttctagctcgac------------------ctcct--------g--------caacctcgtc Pig gcctccatctctggcttggctttccttatttctcctcctttctcccacgagc----------------ct Dolphin -------tctccgacggg---------------------------------c----------------ct Cow -------tctccaacggg---------------------------------c----------------ct Horse -------tctctggctgggtctcccctaaacctcctcgtccctc-------c--------gagggggcct Chinese pangolin -------cctgtggctccgtctcccctaaacctccttgcctct--------c--------gggcaggcct Dog -------cctctggctcggtctccccttaacctcctggtctct--------c--------ggatcggcct Hawaiian monk seal -------cctgtggctcggcctcccattaacctcctggtctct--------c--------cgatcggcct Hedgehog -------cctctgg----------------------------t--------t--------ctatttcctc Shrew -------tctatgact------------------ctttacccc--------c--------caaactcctc Elephant -------cctctggttcggactccccgtgacctccgcatctct--------c--------ca-------- Tenrec -------cttctggttctgcctcctgacgtcctccaggtctgt--------c--------c--------- Sheep ====================================================================== Pika ====================================================================== Zebrafish ====================================================================== X. tropicalis ====================================================================== Opossum ====================================================================== Chicken ====================================================================== Mouse -----------------------------------cgacttc-tccccatcctgagtgaactggaag--- Rat --------------------------------------cctt-tccccatcctttgtgaactgaaag--- GCF_003668045 gtctctctgatcggcctatctt------------ctgagctc-tcctcatcctgagtggactgaaag--- Beaver gtctgtctaaccaacctcccttcttaca-----cctacgctc-ccgccacctggagtgggctgaaag--- Squirrel ---------acccacctaccttctcaca-----cctacgttc-ttgccacctggagtagtctggaat--- Guinea pig gtctctcccactggcccacctttccata-----tctgcgcgc-tcctcacttggagtagactgaaaa--- Rabbit gtctccgcgaccggcctaccttctcaca-----cctgcgcgc-tcgcagcctaacgcgccctgaagg--- Human gtttctttggccggcctatcttctcaca-----cctgcgctc-tcgccacctggcatggactgaagt--- Chimp gtttctttggccggcctatcttctcaca-----cctgcgctc-tcgccacctggcatggactgaagt--- Bonobo gtttctttggccggcctatcttctcaca-----cctgcgctc-tcgccacctggcatggactgaagt--- Gorilla gtttctttggccggcctatcttctcaca-----cctgcgctc-tcgccacctggcatggactgaagt--- Rhesus gtttctctggccggcctaccttctcaca-----cctgcgctc-tcgccacctggcatggactgaagt--- Marmoset gtttctctggcgggcctaccttctcaca-----cctgcgctc-tctccacctggcatggattgaagt--- Tarsier gtctctctgaccggcctaccttctcaca-----cctgcgctc-ttgccacctggagtggaccgaaga--- Bushbaby gtttcttcggcccgccagccttcttaca-----cctgcgcttgtcaccagcccggattgacgcgacg--- Tree shrew gtctctccaatgggcctactttctcaca-----cctg-------------------tggactgaagt--- Malayan flying lemur gtctctccaatgggcctaccttctcaca-----cctgtgctc-tcgccacctggcatgaactgaagt--- Pig acctt-----------------ctcaca-----cctacccgc-tggccacc---agtaagctggagt--- Dolphin acctt-----------------ctcaca-----cctgggctc-tggccacctggcgtaggctggagc--- Cow acctt-----------------ctcaca-----cctgcgctc-tggtctctcggcgtaggatgtagt--- Horse acctt-----------------ctcatg-----tctgcgctc-tcgccacctggc-taggctggagt--- Chinese pangolin acctt-----------------ctcatacctgttctgcgctc-ttgtcgtctgacggagggtggagt--- Dog accga-----------------ct--ca-----cctgcgctc-tagctacctagcataggctggagt--- Hawaiian monk seal accgt-----------------ctcaca-----cctgagctc-tcgccacctggcataggctggagtgag Hedgehog gtctggaagaaaggcctaccttcttact-----cctgcgctc-ttggcacc-----tggtttggagt--- Shrew acctc-----------tcccttcttaca-----cctgc---c-ctagtcaa-----cgggctggaca--- Elephant ---------gtgggcctacctgtttaca-----cctgcgctc-tcaccacctggcgtggactggcat--- Tenrec ---------gtgggcctaccttgttaca-----cctgcgatc-tcaccacctggcgtggactgaagt--- Sheep ====================================================================== Pika ====================================================================== Zebrafish ====================================================================== X. tropicalis ====================================================================== Opossum ====================================================================== Chicken ====================================================================== Mouse gagatagaatttgtggacaaga Rat gaggtagaatttgtggacaaga GCF_003668045 g-ggtagaatttgtagggaaga Beaver a-agtagaattggtgggtcaca Squirrel gaggtggaatcggtgggtaaca Guinea pig gaagtaa---ctgaggtcccca Rabbit gaggtggaaccagcgggtgacc Human gaggtagaatcggcaggtgaca Chimp gaggtagaatcggcaggtgaca Bonobo gaggtagaatcggcaggtgaca Gorilla gaggtagaatcggcaggtgaca Rhesus gaggtagaatcggcaggtgaca Marmoset taggtagaatcggcaggtgaca Tarsier gaggtagaatgggcgggtgaca Bushbaby tagatagaatcttcgggcgacc Tree shrew gaggtggaatcggctggtgaca Malayan flying lemur aaggaagaatctgtgggtgac- Pig gtggtagtgtccgctggtgaca Dolphin gcggtaggacccgccggtaaca Cow gctgtaagatccgctggtaaca Horse gaggtaggatgggccggcaaca Chinese pangolin gaggtaagatcggcccggaaca Dog gaggtatcatcctcctgtaata Hawaiian monk seal gaggtatcatcccccggtaata Hedgehog gaagtggcataggtgggtgact Shrew gaggtagtacagtagcactgta Elephant ggggtaggatcggccggtgata Tenrec ggggtaggatcagccggtgctg Sheep ====================== Pika ====================== Zebrafish ====================== X. tropicalis ====================== Opossum ====================== Chicken ====================== Inserts between block 31 and 32 in window Beaver 9bp B D Squirrel 9bp B D Rabbit 12bp B D Human 9bp B D Chimp 9bp B D Bonobo 9bp B D Gorilla 9bp B D Rhesus 9bp B D Marmoset 9bp B D Tarsier 9bp B D Bushbaby 6bp B D Tree shrew 8bp B D Malayan flying lemur 8bp B D Pig 9bp B D Dolphin 9bp B D Cow 9bp B D Horse 9bp B D Chinese pangolin 8bp B D Dog 9bp B D Hawaiian monk seal 9bp B D Hedgehog 9bp B D Shrew 9bp B D Elephant 9bp B D Tenrec 12bp Alignment block 32 of 317 in window, 56741984 - 56742076, 93 bps B D Mouse ttc----tgacag-tcccc-aaaggtcagcatgacaggt----agt--tctcagtcatcc---------- B D Rat ttc----tgacag-tcccc-aaaggtcagcatgccagat----agt--tctcagtcatcc---------- GCF_003668045 ttctttttgacag-tcccc-aaaggtcagcattgcagga----agt--tctcagtcatct---------- Beaver ttc----tgacag-ccctt-aaagaccagtatgacaggt----aat--tctaagacagct---------- B D Squirrel tcc----tgacag-ccccc-aaagtcctgcatggtcggt----tat--tctaagactccc---------- B D Guinea pig -ct----tgacgc-ctcct-gaaggcccacagggcaggt----tattatttaaaataccc---------- B D Rabbit tcc----tgacag-ccctt-ggaggcctgcgggaccggc----cat--tctgagacgccc---------- B D Human tcc----tgacag-tcccc-agaggcccgcatgacagat----ttt--gctaagacaact---------- B D Chimp tcc----tgacag-tcccc-agaggcccgcatgacagat----ttt--gctaagacaact---------- B D Bonobo tcc----tgacag-tcccc-agaggcccgcatgacagat----ttt--gctaagacaact---------- B D Gorilla tcc----tgacag-tcccc-agaggcccgcatgacagat----ttt--gctaagacaact---------- B D Rhesus tcc----tgacag-tcccc-agaggcccgcatgacagat----ttt--gctaagacaact---------- B D Marmoset t----------------cc-ggtggccctctcgacagat----ttt--gctaagacaact---------- B D Tarsier tcc----tgatag-tcccc-ggaggcctgcctggcaggt----aat--gctaagacagcc---------- B D Bushbaby tct----tggcgg-ctggc-ggaggcctgcacgacagat----tat--gctaagac--ct---------- B D Tree shrew tcc----tgacag-aaccc--gaggcctgcaggtcaggg----tat--tctaag--cacc---------- B D Malayan flying lemur tct----tgacag-cccct-agaagcctgcatgacgggt----cat--tctaag---------------- B D Pig tcc----tgacag-cctag-cgaggcttgcacggcaggctatttat--tctaagaaccct---------- B D Dolphin tcc----tgatat-cccct-cgaggcttacaggacaggc----tat--tctaagaacgct---------- B D Cow tct----tgacaa-cctct-tgaagcttgcctgacaggc----tat--tctaagaaccct---------- B D Sheep tct----tgacaa-cctct-tgaagcttgcatgacaggc----tat--tctaagaaccct---------- B D Horse tcc----ttgcagcccccc-ggagccctgcaggacagac----tat--tctaagaagccc---------- B D Chinese pangolin --c----tgacag-cccct-ggaggcctgtgtgacaggc----tat--tctgagaactcc---------- B D Dog tcc----ggacag-cccca-ggaggcccgcaggaccggc----tat--tctaagaatacc---------- B D Hawaiian monk seal tcc----aggcag-cccct-ggaggcctgcatgacaggc----tat--tctaagaagcac---------- B D Hedgehog acc----tgccag-tccct-ggagaccttcatgatgagt----tat--tttaacacacatacacacacac B D Shrew tcc----cgacag-tccat-ggaggcctcagtga---------tac--attaagacactt---------- B D Elephant tcc----tgacag-cctcttggaagctcgtatgacaggg----tgt--cctaaga--------------- B D Tenrec ttc----tgacaa-cctgtaggaggcctgcatgacaggt----cat--tctaagg--------------- B D Pika ====================================================================== B D Zebrafish ====================================================================== B D X. tropicalis ====================================================================== B D Opossum ====================================================================== B D Chicken ====================================================================== Mouse ---------------------------------------------------c-------------tta-- Rat -------------------t---------------catgcccaggagctccc-------------ttg-- GCF_003668045 -------------------t---------------cacgtcccggagctccc-------------tca-- Beaver -------------------t---------------catcctccccgcccggg-------------taa-- Squirrel -------------------c---------------catcctt---------g-------------taa-- Guinea pig -------------------c---------------cacctat---------g-------------tat-- Rabbit -------------------c---------------cagccca---------g-------------tca-- Human -------------------ccc-----t-------cacccct---------g-------------tgc-- Chimp -------------------ccc-----t-------cacccct---------g-------------tgc-- Bonobo -------------------ccc-----t-------cacccct---------g-------------tgc-- Gorilla -------------------ccc-----t-------cacccct---------g-------------tgc-- Rhesus -------------------ccc-----t-------cacccct---------g-------------tgc-- Marmoset -------------------ccc-------------caccccc---------g-------------tgc-- Tarsier -------------------tcc-----tctggccccatctcc---------g-------------tga-- Bushbaby -------------------cgt-----g-------tccccca---------g-------------tag-- Tree shrew -------------------tct-----c-------caccccc---------a-------------ggtaa Malayan flying lemur ---------------------------a-------caacctg---------a-------------gac-a Pig -------------------ca------c-------caccacc---------a-------------atg-- Dolphin -------------------caccatcac-------caccatc---------a-------------aag-- Cow -------------------caccatggc-------caccatc---------a-------------aag-- Sheep -------------------caccatggc-------caccatc---------a-------------aag-- Horse ------------------------------------ccttcc---------a-------------atg-- Chinese pangolin -------------------c-------c-------acccccc---------a-------------ttg-- Dog -------------------c-------c-------ccccccc---------cgacacacacacacctg-- Hawaiian monk seal -------------------c-------c-------ccctccc---------c----------cacccg-- Hedgehog acacacacacactcacacgcgccacgac-------caccccc---------g-------------aag-- Shrew ---------------------cgacttc-------catctgc---------a-------------agg-- Elephant -------------------c-------c-------agtatct---------t-------------aac-- Tenrec -------------------c-------c-------catctca---------g-------------aac-- Pika ====================================================================== Zebrafish ====================================================================== X. tropicalis ====================================================================== Opossum ====================================================================== Chicken ====================================================================== Mouse agggtcgtgcc--acttgttctctg--agagctctaacctccaac Rat atggtcgtgccc-gctggctacctt--agagccctaacctgtaat GCF_003668045 actgtcgttctc-acttgctacctt--agagtcctagactccaat Beaver acagtggcccct-gcctcccacct---acagtatt-------aac Squirrel acagtgctgc---gcttcccacct---agagtctt-------aac Guinea pig actgcggcgcc--cccctccaccc---ataatttaagc----atc Rabbit acggcggcgcc---cctgccacct---ggagccct-------aac Human acggtggcgccc-gcctcccacct---atagcctt-------aac Chimp acggtggcgccc-gcctcccacct---atagcctt-------aac Bonobo acggtggcgccc-gcctcccacct---atagcctt-------aac Gorilla acggtggcgccc-gcctcccacct---atagtctt-------aac Rhesus acggtggcg-cc-gcctcccacct---atagtctt-------aac Marmoset accgtggcgccc-gcctcccactt---agggtttt-------aac Tarsier acggtggcgccc-gcctcccacct---agagtctt-------aac Bushbaby acggtggctccc-gcctcccaccc---agattctt-------aac Tree shrew acagcggcacttaaattcccatct---agagtctt-------aat Malayan flying lemur acggtggcgccc-acctcccacct---agagtctt-------aac Pig acggtggcgctc-accttccatct---agagtttt-------aac Dolphin acggtggcgctc-acctccagc-----agaactca-------agc Cow acggtggcgctc-acctcccacct---agagtttt-------aac Sheep acggtggcgctc-acctcccacct---agagtttt-------aac Horse acggtggcgccc-acctcccaccc---agagtttt-------aac Chinese pangolin tcggtggcgccc-actttccacct---agagtttt-------aac Dog acggtggccccc-acctctcacct---agagttct-------acc Hawaiian monk seal acggtgaccccc-acctcccacct---agagtttt-------aac Hedgehog acggtggtatcc-accttccacttacaagagtttt-------aac Shrew acagtggcggtc-atttctcacct---agagcttt-------aac Elephant cggttggcgccc-acctcccacct---agattctt-------aac Tenrec cagttggcgtcc-acttcccacct---ggagtctt-------aac Pika ============================================= Zebrafish ============================================= X. tropicalis ============================================= Opossum ============================================= Chicken ============================================= Alignment block 33 of 317 in window, 56742077 - 56742137, 61 bps B D Mouse tttaattt-gacaaattcatct---------------cttc--cccaaaag------gtgt----cc--- B D Rat ttcatttttgacaagtccatct---------------cttc--cccaagag------gtgt----cc--- GCF_003668045 ttcaattctgagagctccatct---------------cttc--cccaagtg------gtgt----cc--- Beaver ttcaactcggagaaatccatcg---------------cttc-gccaaagag------gtct----cc--- B D Squirrel ttccattctgaggtgttcaacg---------------ttcccacctagggg------gtct----cc--- B D Guinea pig attaatta-gatagccctattt---------------cttc---gcaagaa------gtct----cc--- B D Rabbit tccgcttctgaggggtcggtcg---------------ttcc--ctcaaaga------ggaa----ccggg B D Human ttcaattctgagatgtccatcg---------------ttcc-ccggaggag------gtct----cc--- B D Chimp ttcaattctgagatgtccatcg---------------ttcc-ccggaggag------gtct----cc--- B D Bonobo ttcaattctgagatgtccatcg---------------ttcc-ccggaggag------gtct----cc--- B D Gorilla ttcaattctgagatgtccatcg---------------ttcc-ccggaggag------gtct----cc--- B D Rhesus ttcaattctgagacgtccatcg---------------ttcc-ctagaggag------gtct----cc--- B D Marmoset ttcaattctgagacgtccatcg---------------ttcc-cctgaggag------gtct----cc--- B D Tarsier ttcacttttgagatgtccatcg---------------ttct-tccaaggag------gtct----cc--- B D Bushbaby tttaaagttgagacggccgtcc---------------ttcc-cccaaggagaagtccatct----cc--- B D Tree shrew ttgaattctgaga-------cg---------------ttcc-tccaaagag------gtct----tc--- B D Malayan flying lemur ttcaattctgagacatcccccg---------------ttcc-cccaaagag------gtct----cc--- B D Pig ttaaattctgagatgtctgtat---------------ttca-cccaaagaa------gtct----tc--- B D Dolphin ctctttcatcggggcacagact---------------tcct-ttta--------------c----tc--- B D Cow ttaaattctgagatgtctgcct---------------tccc-cccagagaa------gcct----tc--- B D Sheep ttaaattctgagatgtctgcct---------------tccc-ctcaaataa------cttt----tc--- B D Horse ttcagttctgagatgtccgttcctccccccccccccccccc-cccccataa------gtct----cc--- B D Chinese pangolin tttaattctgagacgtcttt-----------------ctat-cgcaaacag------atct----tt--- B D Dog ttcagttcggaggcgtctgttcc--------------cccc-tcccgccaa------gttt----cc--- B D Hawaiian monk seal ttaaattctgaggcgtctgtttt--------------cccc-tccccccaa------gtct----cc--- B D Hedgehog ttctattcctagacg-ctgtcttt-------------agct-cccccaaat------atct----ct--- B D Shrew ttcaatttctaggcgtctgtcagt-------------ccct-ctttctccg------ttcc----cc--- B D Elephant ttcaatcctgagacgtctgtca---------------tctc-cgtaaaagg------gtct----cc--- B D Tenrec ttcaatccagagacgtcagtca---------------ctct-ctgaaaaag------gtctggggga--- B D Opossum tttgaccc-aacataattgttt---------------cctt-c--------------tctt----cc--- B D Pika ====================================================================== B D Zebrafish ====================================================================== B D X. tropicalis ====================================================================== B D Chicken ====================================================================== Mouse tc----ggt-c-tc---------------tacccacttaaagt Rat tc----ggt-c-tc---------------tacccacttaaagt GCF_003668045 tc--ggggt-c-cc---------------tacccgcttaaagt Beaver tt----ggt-cacc---------------tccccacttagagt Squirrel tc----ggt-c-tc---------------tatcccctcctagt Guinea pig tccctcagc-c-cc---------------taccctctttgagt Rabbit tctttgggc-c-cc---------------gtcccgtttggagt Human tc---gggc-c-cc---------------ttctcccttcgagt Chimp tc---gggc-c-cc---------------ttcccccttcgagt Bonobo tc---gggc-c-cc---------------ttctcccttcgagt Gorilla tc---gggc-c-cc---------------ttctcccttcgagt Rhesus ta---gggc-c-cc---------------ttctcccttcgagt Marmoset tc---gggt-c-cc---------------ttctcccttcgaat Tarsier tc----ggc-c-cc---------------ttccccctccgagt Bushbaby tt-----cc-c-cc---------------tttcctcttcgagt Tree shrew tc----agc-c--c---------------cttccccctcgagt Malayan flying lemur tc----ggc-c-gc---------------tttccccttcgagt Pig tc----agt-c-cc---------------ttcccctttggagt Dolphin ct----tcc-c-cc---------------ttctcccttcgagt Cow tc----ggc-c-cc---------------ttctcccttcaagt Sheep tc----ggc-c-cc---------------ttctcccttcgagt Horse tc----ggtcc-cc---------------ttcccccttcgagt Chinese pangolin tt----agt-c-ct---------------ttcccccttcgagt Dog tc----aac-t-cc---------------ttcctccttag--- Hawaiian monk seal tc----aac-t-cc---------------ttcccccttagagt Hedgehog tc----agc-c-cc--------------atccctctccacagt Shrew tt----cgc-c-ctccaaatctcaggaggtttctctttagtgt Elephant ta----gtc-c-cc---------------ttcccctctggagt Tenrec gg----gga-g-gc---------------ttccccctcggagt Opossum tt----gtt-c-cc---------------tttccccataatct Pika =========================================== Zebrafish =========================================== X. tropicalis =========================================== Chicken =========================================== Alignment block 34 of 317 in window, 56742138 - 56742195, 58 bps B D Mouse tattcaaaccgagaccaaa-gcttctgt----t-cgcttattcagcatttttatcagcttgatt B D Rat cattcaaaccaagaccaaa-gcttccgt----t-tgcttattcagcatttttatcagcttgatt GCF_003668045 ctctcaaacccagaccaaa----------------gcttattcagcgtttttaccagcttaatt Beaver tactcatattcagaccaaacgcttttat----t-cgcttattcatcacttttaccagcctgata B D Squirrel cattcatattcagaccaaaagctttcat----t-tgcttattcagcatttttagcagcctgat- B D Guinea pig tactcatattcagaccaaccgctttcct----t-tgctaattcagcattttaaccagacttatt B D Rabbit cactcgcattggggccacacactttcat----g-tgcttattcagcatttttaccggcccaatt B D Pika tgctcgcactcagaccgaaagcctccga----gttgctggctcagcacttgcgccggcctcacg B D Human cattcacattcagaccaaacgctttcat----t-tgtttattcagca-ttttaccagcctgatt B D Chimp cattcatatgcagaccaaacgctttcat----t-tgtttattcagca-ttttaccagcctgatt B D Bonobo cattcatatgcagaccaaacgctttcat----t-tgtttattcagca-ttttaccagcctgatt B D Gorilla cattcatattcagaccaaacgctttcat----t-tgtttattcagca-ttttaccagcctgatt B D Rhesus cattcatattcagaacaaacgctttcat----t-tgtttattcagca-ttttaccagcctgatt B D Marmoset cattcatactcagataagactctttcat----t-tgtttattcagca-ttttaccagcctgatt B D Tarsier cactcatatccaaaccgaacgctttcat----g-tgtttattcagcatttttaccggcctgatt B D Bushbaby cacccatattcagactaaccgctttcat----t-tgtttattcagcatttttaccagcctgatt B D Tree shrew ca----------gaccaaacgctttcatttgct-tgcttattcagcatttttactagcttgatt B D Malayan flying lemur cactcatattctgaccaaacattttcat----t-tgcttattcagcgtttttaccagcctggtt B D Pig ctctcaaattcagaccaaatgctttcat----t-tgcttattcagca--tttaacagcttgatt B D Dolphin ctttcatattcagaccaaacgctttcat----t-tgcttattcagcatttttaacagcctgact B D Cow ctctcgtattcagaccaaaagctttcgt----t-tgcttattcagcatttttaagagcctgatt B D Sheep ctctcgtattcagaccaaaagctttcga----t-tgcttattcagcatttttaagagcccgatt B D Horse atctcataagcggaccaaacgctttcat----t-tgcttattcagcatttttatgagcctgatt B D Chinese pangolin ccctcatattacgaccaaaggcttcctt----t-tgcttattcagcatttttatcagcctgatt B D Dog ----tctattcagactaaacgctttcat----t-tgcttattcagcatttttatcagcctgatt B D Hawaiian monk seal ctctcatattccgaccaaatgatttcat----t-tgcttattcagcatttttatcagcttgatt B D Hedgehog ctctcaaatttggatccaaggatgtcat----t-tgcttattcagca-ttttctcagcctgatt B D Shrew ctctcatattcggaccgacagattccat----t-tgcttattcagca-ttttatcagcctgatt B D Elephant cagtcatattcggaccgaacgctctcat----t-tgcttactcagcatttttaccagtctgatt B D Tenrec cactc----tcagactaaacgctctcat----t-tgcttattcagcattttcaccagtctcatt B D Opossum ------------ggtttaatattttaat----t-tgactattcaatatatattttgttttgatt B D Zebrafish ================================================================ B D X. tropicalis ================================================================ B D Chicken ================================================================ Alignment block 35 of 317 in window, 56742196 - 56742508, 313 bps B D Mouse ttgcactctgtttgcg--gcgcccct--gggaagacgtc-aaacactct--tattc-at-----tg-tat B D Rat ttgtgat--gtttgag--gcgccctt--gggaagacgtc-aaacactcc--tattc-at-----tg-tat GCF_003668045 ttgcact--gtttgtg--gcgcccccgagggaagatgtc-aaacactca--taatc-at-----tg-tat Beaver ttgttgtctgtttgtg--ccgcccct--gggaagatgtc-aaataccca--tattc-at-----ta-ttt B D Squirrel ttgctttctgcttgtg--cctccccccccccaagatgtc-aaataccca--ttttc-at-----tc-tat B D Guinea pig tggttgtgtatttgcg--ccggtcct--gggaagatgtc-aaacacccg--ttttc-tt-----tg-tat B D Rabbit ttgttgtctgtctgtg--cggccc----gggaggatgtc-aaaccccca--ttttc-ct-----tg-tgt B D Pika ctgctgtctgtgtgtg--ccgccccgg-ggagggacgtc-cgacacccattttttc-ct-----gg-tgt B D Human ttgctgtctttttgtg--ccgcttct--gggaagatgtc-aaacaccca--ttttc-at-----tg-tat B D Chimp ttgctgtctttttgtg--ccgcttct--gggaagatgtc-aaacaccca--ttttc-at-----tg-tat B D Bonobo ttgctgtctttttgtg--ccgcttct--gggaagatgtc-aaacaccca--ttttc-at-----tg-tat B D Gorilla ttgctgtctttttgtg--ccgcttct--gggaagatgtc-aaacaccca--ttttc-at-----tg-tat B D Rhesus ttgctgtctttttgtg--cctcttct--gggaagatgtc-aaacaccca--ttttc-at-----tg-tat B D Marmoset ttgctgtctttttgtg--tcgcttct--gggaagatgtc-aaacaccca--ttttc-gt-----gg-tat B D Tarsier ctgctgtc----tgtg--ccgcttct--gcgaagacgtc-aaacaccca--ttttt-at-----tg-tat B D Bushbaby ttgctgtctgtttgtg--tggctcct--gggatgatgtc-aaacaccca--ttttc-at-----tg-tat B D Tree shrew ttgctgtctgtttgtg--ctgcccct--gggaagatgtc-aaacaccca--ttttc-at-----tg-tat B D Malayan flying lemur tcgctgtctgtttgtg--ccgcccct--gggaagatgtc-aaacacctc--ttttc-attgtactg-tat B D Pig ttgctgtctgtttgcg--ctgcccct--gggaaggtgtc-aaacaccct--ttttc-gt-----tg-cat B D Dolphin ttgctgtctgtttgcg--ctgcccct--gggaaggtgtc-aaacacctc--ttttc-at-----tg-tat B D Cow ttg----ctgtttgcg--ctgcccct--gggaaggtgtc-aaacacctc--ttttc-at-----tg-tat B D Sheep ttg----ctgtttgcg--ctgcccct--gggaaggtgtc-aaacacctc--ttttc-at-----tg-tat B D Horse ttgctgtctgtttgtg--ctgcccct--gggaaggtgtc-aaacaccca--ttttc-at-----tg-tat B D Chinese pangolin ctgctgtctgtttgcg--ctgcctct--gggaaggtgtc-aaacaccca--ttttc-at-----tg-tat B D Dog ttgttgtctgtttgcg--ctgccgcc--ggaaaggtgtc-aaacatcca--ttttc-at-----tg-tat B D Hawaiian monk seal ttgttgtctgtttgcg--ctgcccct--aggaaggtgtcaaaacaccca--ttttc-at-----tg-tat B D Hedgehog ttgctgcctgtttgcg--ctgccccc--gggaaggtgtc-aaacaccta--tttttgat-----tg-tct B D Shrew tttccgtctgtttgca--ctgcccct--tggaaggtgtc-aaatgccca--ttttcaat-----tg-tat B D Elephant ttgcagtctgtctacg--ctgccctt--gggaagatgtc-aaacaccca--ttttc-at-----tg-tat B D Tenrec ttgctgtctgtttacg--ctgctcct--gggaagatgtc-aaacaccca--ttttc-at-----tg-tat B D Opossum tt----------tgag--ttccaatt--gggctgatgtt-aaatattca--tttcc-at-----tgttat B D Chicken ttgctctttgcgtgcggcttaccgcc--tggcaggtatt-acgcgggcg--ttgct-gt-----tg-tgg B D Zebrafish ====================================================================== B D X. tropicalis ====================================================================== Mouse tt-agtcacccaggtgcggagccagccagaaacagacggcggaaggagtttccc-ggactgagctgtcac Rat tt-agtcacccaggtgcggagccagccagaaacagacggcggaaggagtttccccggactgagctgccac GCF_003668045 tt-agtcacccaggtgcggagccggcctg----agacagcggaaggagtttcccagaactgagctgtcac Beaver tt-agtcacccaggtgcggagccagcctgcaaaagacagcggaaggagtttccc-ggactgcggtgtcac Squirrel tt-agtcacccaggtgcggagccagcctgaaaaagacagcggaaggagtttccc-ggaccgcgctgtcac Guinea pig tt-agtcatccaggtgcggagccagcctgaaaaagacagcggaaggaattttcc-ggactgcgctgccgc Rabbit tc--gtcactcaggtgcggagacggaccgagagagacagcggaaggagtttccc-gggctgtgccgtcgc Pika cccagtcacccaggtgcggagacgg-tcgcaggagacggcggaaggagttttccggggccgcgctgtcgc Human tt-agtcacccaggtggggagctagcctgaaagagacagcggaaggagtttcct-ggactgcgctgtcgc Chimp tt-agtcacccaggtggggagctagcctgaaagagacagcggaaggagtttcct-ggactgcgctgtcgc Bonobo tt-agtcacccaggtggggagctagcctgaaagagacagcggaaggagtttccc-ggactgcgctgtcgc Gorilla tt-agtcacccaggtggggagctagcctgaaagagacagcggaaggagtttcct-ggactgcgctgtcgc Rhesus tt-agtcacccaggtggggagccagcctgaaagagacagcggaaggagtttcct-ggactgcgctgtagc Marmoset tt-agtcacccaggtggggggccagcctgaaagagatagcggaaggagtttcct-ggactgccctgccgc Tarsier tt-agtcacccaggtggggagccagcctgagagagacggcggaaggagtttcct-ggactgcgctgtcgc Bushbaby tt-agtcacccaggtggggagccagcccgaaagggacggcggaaggagtttccc-ggactgcgctgtcgc Tree shrew tt-agtcacccaggtgcggagcaagcctga--gagacagcggaaggagttgccc-ggattgggctgtcgc Malayan flying lemur tt-agtcactcaggtgcggagccagcctgaaggagacagcggaaggagtttctc-gaactgcgctgtcgc Pig tt-agtcacccaggtgcagagcacgattgaaagagacagcggaaggactttccc-agactgtgctgtcgt Dolphin tt-agtcacccaggtgctgagcaagattgaaagagacagcggaaggactttccc-ggactgtgctgtcgc Cow tt-agtcacccaggtgcagagcgagattgagagagacagcggaagaactttccc-ggactgtgctgtcac Sheep tt-agtcacccaggtgcagagcgagattgaaagagacagcggaagaactttccc-ggactgtgctgtcgc Horse tt-agtcacccaggtgccgagcaggcttgaaagagtcagcggaaggac-ttacc-ggaccgcactgtcgc Chinese pangolin tt-agtcacccaggtgcggatcaatcttgaaagagacagcggaaggactttccc-ggactgcgttgtcgc Dog tt-agtcacccaggtgcagagcaagcttgaaagagacagcggaagaactttccc-ggactgcactgtcgc Hawaiian monk seal tt-agtcacccaggtgcagagcaagcttgaaagagacagcggaaggactttccc-ggactgcactgtcgc Hedgehog tt-agtcacccaggtgcggggagagcctgccaaggacggcggaaggactttccc-cgacttcgctgtcgc Shrew tt-agtcactcaggtgcggagccagcctgaaagagacagcggaaggactttccc-ggactacagtgtcgc Elephant tt-agtcacccaggtgcagagcaagtctgaaagagacaacggaaggagcttccc-ggacagcgctgtcgc Tenrec tt-agtcacccaggtgcagagcaa-tctgaaagagacaacggaaggagtttccc-ggcctgcgctgtcgc Opossum tt-agtaatccaggtgcggagctctcctaaaagagagaacggaaggagttaccg-ggattatactgtctg Chicken ta-gg--gaccaggtgctgagcacgtccgcgagaggcagcggaaag-gccgccg-gccccgcgctgtccg Zebrafish ====================================================================== X. tropicalis ====================================================================== Mouse tcaccg-gcctgcaccaattacaacgcagattgctcgcgggcccacctcttt-tgg-ggtgtgtcacaag Rat tcaccg-gcctgcaccaattacaacgcagattgcccgcgggcccacctcttt-tgg-ggtgtgtcacaag GCF_003668045 tcaccg-gcctgcaccaattacaacgcagattgccctcgggcccacctcttt-tgg-ggtgtgtcacaag Beaver tcaccg-gctcgcaccaatcaccacgcagtttgccctcgggcccgcctcttt-ggg-ggtgtgtccttaa Squirrel tcaccg-aacgacaccaatcatcacgcagcttgccctcggaccctcctcttt-ggg-ggtgtgcccttag Guinea pig tcacag-gcctgcaccaatcaccaagcagttcgccctcgggcccgcctcttt-agg-ggtgtgtccctag Rabbit tcaccg-tcgggcgccaatcaacacgcagttttctctcgggcccgcctcttt-ggggggcgtgtccctag Pika tcaccg-gcctgcaccaatcaacacgcggcgtgctgccgggcccgcctcttg-gggaggcgtgtcccccg Human tcaccg-acccgcaccaatcaccatgcagcttgccctcggacccgccccttt-tag-ggcgtgtccccag Chimp tcaccg-acccgcaccaatcaccatgcagcttgccctcggacccgccccttt-tag-ggcgtgtccccag Bonobo tcaccg-acccgcaccaatcaccatgcagcttgccctcggacccgccccttt-tag-ggcgtgtccccag Gorilla tcaccg-acccgcaccaatcaccatgcagcttgccctcggacccgccccttt-tag-ggcgtgtccccag Rhesus tcaccg-acccgcaccaatcaccacgcagcttgccctcggacccgccccttt-tag-ggcgtgtccccag Marmoset tcaccg-gcccgtaccaatcaccacgcagctcgccctcaggcccgcctcttt-gag-ggcgtgtccccag Tarsier tcagcg-gcccgcaccaaccaccacgcagcttgtcctcgggcccgcctcttt-ggg-ggcgtgtccacag Bushbaby tctccg-gatcgcaccaatcaacacgcagcttgcgcttgggcccgcctcttt-ggg-ggcgcgtctctag Tree shrew tcacga-ccctgctccaatcactacgctgcttgccctcaggcccgcctcttt-ggg-ggcgtgtccctag Malayan flying lemur tcacgg-ggccgcaccaatcagcacgcagtttgccctcgggtccgcctcttt-aga-ggcgtgtccctag Pig tcagca-gactacaccaatcaccacgcagcttcctctcgggcccgcctctttgggg-ggcgtgtccctag Dolphin tcaacg-gaccaaaccaatcagcatgcagcttgccttcgggccctcctcttt--gg-ggcgtgtccctag Cow tcaacg-ggccaaaccaatcatcacgcaggttgcctccgggccctcctcttt-ggg-ggcgtgcccctag Sheep tcaacg-ggccaaaccaatcatcacgcaggttgcctccgggccctcctcttt-ggg-ggcgtccccctag Horse tcactg-gcccgcaccaatcaccacgctgcttgtcctcggaccctcctcttt-ggg-ggcgtgaccctaa Chinese pangolin tcagcg-gaaagcaccaatcaccacgcagcttgccctcggaccctcctcttt-ggg-ggcgtgtccctag Dog tcagca-gcccgcaccaatcaccacgcagcttgacctcgggccctcctcttt-gag-ggcgtgtccctgg Hawaiian monk seal tcagcg-gcccgcaccaatcaccacgcagcttgacctcgggccctcctcttt-gag-ggcgtgtccccag Hedgehog tcagcgcggccacaccaatcaccgcacggctggccctcggaccctcctctccgggg-ggcgtgtcgctcg Shrew tcagca-ggtcacaccaatcggcgcacagtgtgccccagggccctcctcttt-gtg-ggcgtgtccctag Elephant tcaacg-actctcaccaatcgcagcacagagtgccctcgggcccgcctcttt-ggg-ggcgtgtccctag Tenrec tcaacg-gctcgtccctatcagcgcgcagattgccctggggcccgcctcttt-ggg-ggcgtgtccctag Opossum ttacca-tctacagccaatctcaaagtcttcttctttgagtcccgcctcctt-ggg-ggtgggccactag Chicken tcatct-cccgcggccactggcggggctgcagggccgccgggccgccccc---ggg-ggcggg---ctcg Zebrafish ====================================================================== X. tropicalis ====================================================================== Mouse tgagtgatagactgagccgcccggccctgctcagcccagcccacgttgctgc-ttagattgaaatgcaga Rat tgagtgatagactgagccgcccggccctacacagcccagcccacgttgctgc-ttagattgaaatgcaga GCF_003668045 tgagtgatagactgagccgcccggccctgctcagcccagcccacgttgctgc-ttagattgaaatgcaga Beaver tgagtgatagacggagccgcccggccttgctcagcccagcccacgttgctgc-ttagattgaaatgcaga Squirrel tgagtgatagacggagccgcccggccctactcagcccagcccacgttactgc-ttagattgaaatgcaga Guinea pig tgagtgatagacagagcctcccggcccagctcagcccagcccacgttgctgc-tgagattgaaatgcaga Rabbit tgagtgatagacggagccgcccggccctgctcagcccagcccacgttgctgc-ttagattgaaatgcaga Pika tgagtgatagacggagccgcccggccctgctcagcccagcccacgccgctgc-ttagattgaaatgcaga Human tgagtgatagacggagccgccctgccctgctcagcccagcccacgttgctgc-ttagattgaaatgcaga Chimp tgagtgatagacggagccgccctgccctgctcagcccagcccacgttgctgc-ttagattgaaatgcaga Bonobo tgagtgatagacggagccgccctgccctgctcagcccagcccacgttgctgc-ttagattgaaatgcaga Gorilla tgagtgatagacggagccgccctgccctgctcagcccagcccacgttgctgc-ttagattgaaatgcaga Rhesus tgagtgatagactgagccgcccggccccgctcagcccagcccacgttgctgc-ttagattgaaatgcaga Marmoset tgagtgatagacggagccgcccggccctgctcagcccagcccacgttgcagc-ttagattgaaatgcaga Tarsier tgagtgatagacggagccgcccggccctgctcagcccagcccacgttgctgc-ttagattgaaatgcaga Bushbaby tgagtgatagactgagccgcccggccctgctcagcccagcccacgttgctgc-ttggattgaaatgcaga Tree shrew tgagtgatagacggagccgcccggcccagatcagcccagcccacgttgctgc-ttagattgaaatgcaga Malayan flying lemur tgagtgatagacggagccgcccggccctgctcagcccagcccacgttgctgc-ttagattgaaatgcaga Pig tgagtgatagacggagccgcccgg-cccgttcagcccagcccacgttgctgc-ttagattgaaatgcaga Dolphin tgagtgatagacggagccgcccggccccgctcagcccagcccacgttgctgc-ttagattgaaatgcaga Cow tgagtgatagacggagccgcccggccccgctcagcccagcccacgttgctgc-ttagattgaaatgcaga Sheep tgagtgatagacggagccgcccggccccgctcagcccagcccacgttgctgc-ttagattgaaatgcaga Horse tgagtgatagacggagtcgcccggccccgctcagcccagcccacgttgctgc-ttagattgaaatgcaga Chinese pangolin tgagtgatagacggagccgcccggcccagctcaggccagcccacgttgctgc-ttagattgaaatgcaga Dog tgagtgatagacggagccgcccggcccagctcgggccagcccacgttgctgc-ttagattgaaatgcaga Hawaiian monk seal tgagtgatagacggagccgcccggcccagctcaggccagcccacgttgctgc-ttagattgaaatgcaga Hedgehog tgagtgatagacggagccgcccggccccgcgcagcccagcccacgttgctgctttagattgaaatgcaga Shrew tgagtgatagacggagccgcccggccccactcagcccagcccacgttgctgc-ttagattgaaatgcaga Elephant tgagtgatagacggagccgcccggccccgctcgacccagcccacgttgctgc-ttagattgaaatgcaga Tenrec tgagtgatagcccgagccgcccggccccggtcaacccagcccacgttgctgc-ttagattgaaatgcaga Opossum tgattgataggcagagacacccctcccaactcagcccagcccactttactgc-ttagattgaaatgcaga Chicken ggagcggggggctgcggctcccggcccagcccggccctgcccacgttgcc-c-tgaggttgaaatgcaga Zebrafish ====================================================================== X. tropicalis ====================================================================== Mouse actcaagcctctttcagcccggcacagacttccttttactctttcctttggca-- Rat actcaagcctctttcagccgggcacagacttccttttactctttcctttggca-- GCF_003668045 actcaagcctctttctggccggcacagacttccttttactctttcctttggca-- Beaver actcaagtctctttcatcggggcacagacttccttttactccttccttttgca-- Squirrel actcaagcctctttcatcagggcacagacttccttttactccttccttttgca-- Guinea pig actcaagcctctttcatcggggcacagacttccttttactctttccttttgca-- Rabbit actcaagcctctttcatcggggcacagacttccttttactccttccttttgca-- Pika actcaagcctctttcatcggggcgcagacttccttttactccttccttttgca-- Human actcaagcctctttcatcggggcacagacttccttttacttcttccttttgcc-- Chimp actcaagcctctttcatcggggcacagacttccttttacttcttccttttgcc-- Bonobo actcaagcctctttcatcggggcacagacttccttttacttcttccttttgcc-- Gorilla actcaagcctctttcatcggggcacagacttccttttacttcttccttttgcc-- Rhesus actcacgtctctttcatcggggcacagacttccttttacttcttccttttgca-- Marmoset actcaagcctctttcaccggggcacagacttccttttacttcttccttttgca-- Tarsier actcaagcctccttcaaccgggcacagacttccttttactccttccttttgca-- Bushbaby gctcaagcctctttcatcggggcacagacttccttttactccttccttttgcc-- Tree shrew actcaagcctctttcatcggggcacagacttccttctactccttccttttgca-- Malayan flying lemur actcaagcctctttcatcggggcacagacttccttttactccttccttttgca-- Pig actcaagcctctttcagcggagcacagacttccttttactccttccttttgca-- Dolphin actcaagcctctttcatcggggcacagacttccttttactccttccttttgca-- Cow actcaagcctctttcagcggggcacagacttccttttactccttccttttgca-- Sheep actcaagcctctttcagcggggcacagacttccttttactccttccttttgca-- Horse actcaagcctctttcatcggggcacagacttccttttactccttccttttgca-- Chinese pangolin actcaagcctctttcatcagggcacagacttccttttactccttccttttgca-- Dog actctagcctctttcatcggggcacagacttccttttactccttccttctgct-- Hawaiian monk seal actctagcctctttcaacggggcacagacttccttttactccttccttctgca-- Hedgehog actcaagcctctttcatcagggcacagacttccttttacttcttcctttagct-- Shrew actcaagcctctttcatcggggcacagacttccttttactctttccttttgca-- Elephant actcaagcctctttcatcccggcacagacttccttttactccttccttttgca-- Tenrec actcaagcctctttcatccccgcacagacttccttttactccttccttttgca-- Opossum actcatacctctttcatcagggcacagacttccttttattcctttctctttaa-- Chicken actcaaggctctctcgccgggaagtagatttcctcgtagtccttttttcctcgcc Zebrafish ======================================================= X. tropicalis ======================================================= Inserts between block 35 and 36 in window B D Opossum 1bp Alignment block 36 of 317 in window, 56742509 - 56742571, 63 bps B D Mouse ctcttgtcgcctcctcccgggaagaagccaaggcaccctcggc---------t-t-ggagcag------- B D Rat ctcttgtcgcctcctcccggggagaagccaaggcacccgcggc---------t-t-ggagcag------- GCF_003668045 ctctcgtcgcctcctcctggggagaagccgaggcagccgcgtc---------t-t-ggagcag------- Beaver ctcttgtcgcctcctcccggggagaagctgaggcaccagccac---------c-c-ggagcag------- B D Squirrel ctctcgcctcctcctcccggggagaagctgaggtaccagcaac---------c-c-ggagcag------- B D Guinea pig ctcgtgcctcctcctcccggggagaacctaagataccggcagc---------c-c-ggagcac------- B D Rabbit ctctcgccgcctcctcccggggagaagcggaggcaccggcggc---------c-c-ggggcag------- B D Pika ctcttgccgcctcctcccggggagaacccgaggccccggcggc---------cgc-gggacag------- B D Human ctctcgcctcctcctcctgggaagaagcggaggcgccggcggt------cggc-c-gggatag------- B D Chimp ctctcgcctcctcctcctgggaagaagcggaggggccggcggt------cggc-c-gggatag------- B D Bonobo ctctcgcctcctcctcctgggaagaagcggaggggccggcggt------cggc-c-gggatag------- B D Gorilla ctctcgcctcctcctcctgggaagaagcggaggcgccggcggt------cggc-c-gggatag------- B D Rhesus ctctcgcctcctcctcctgggaagaatcggaggcgccggcggt------ccgc-c-cgggtag------- B D Marmoset ctctcgcctccacctcctgggaagaagcggaggcgccggcggc---------t-c-ggggtag------- B D Tarsier ctctcgccgcctcctccggggaagacgcggaggcaccggcggt---------c-c-ggggtcg------- B D Bushbaby ctcttgcctcctcctcctgggaagaagcggaggcaccggcagc---------c-c-ggggtaa------- B D Tree shrew ctctcgccgcctcctcccggggagaagccgaggccccggcggc---------c-c-cgggcag------- B D Malayan flying lemur ctctcgccgcctccacccggggagaatcggaggcactcgcggc---------c-g-ggggcag------- B D Pig ctctcgccgcctcctcccggggagaagcggaggcagcgacagg---------c-c--------------- B D Dolphin ctctcgccgcctcctcccggggagaagcggaggcaccagcggc---------c-cggggggag------- B D Cow ctctcgccgcctcctccgggggagaagcggaggcaccggcggc---------c-c-ggggcag------- B D Sheep ctctcgccgcctcctcccggggagaagccgaggcaccggcggc---------c-c-ggggcag------- B D Horse ctctcgccgcctcctcctggggagaagcggaggcaccggcggc---------c-c-ggggcag------- B D Chinese pangolin ctctcgccgcctcctccaggggagaagccgaggcaccggcgac---------c-c-ggggcag------- B D Dog ctctcgccgcctcctcccgggaagaagcggaggcaccggcggt---------c-c-ggggcag------- B D Hawaiian monk seal ctctcgccgcctcctcccgggaagaagcggaggcaccggctgc---------c-c-ggggcag------- B D Hedgehog ctctcgccgcctcctcccgcggcgaagcgga------ggcggc---------c-g-gggacag------- B D Shrew ctctcgccgcctcctctcggggtgaagcggaggcaccggcggc---------c-c-agagctg------- B D Elephant ctctcgccgcctcctctcggggagaagcggaggcaccggcggc---------c-c-ggggcaa------- B D Tenrec ctctcgccgcctcctctcggggagaagcggaggcttcggcggc---------c-c-agggcaa------- B D Opossum ttctttctgtctgctcctgggatcaatcggagggacccgtggc---------c-a-gagctagaggagac B D Chicken cccctgctatctcctc--ggcggcaagcagggagcccggcgggcgagcgcggc-c-ggggcgg------- B D Zebrafish ====================================================================== B D X. tropicalis ====================================================================== Mouse cgacaggccgg Rat cgacaggccgg GCF_003668045 cgacaggtcgg Beaver cgacaggccgg Squirrel cgacaggtcgg Guinea pig cgacaagccgg Rabbit cgacaggccgg Pika agccaggccgg Human caacaggccgg Chimp caacaggccgg Bonobo caacaggccgg Gorilla caacaggccgg Rhesus caacaggccgg Marmoset caacaggccgg Tarsier cgacaggccgg Bushbaby ccacaggctgg Tree shrew cgacaggccgg Malayan flying lemur cgacaggccgg Pig ---------gg Dolphin cgacacaccgg Cow cagcacgacgg Sheep cagcacgacgg Horse cgacaggccgg Chinese pangolin cgacaggcctg Dog cggcaagccgg Hawaiian monk seal cgacaagccgg Hedgehog cggccggacgg Shrew cgatagaccgg Elephant ccataggccgg Tenrec ttataggccgg Opossum agaaatatcga Chicken cgggaggtcgg Zebrafish =========== X. tropicalis =========== Inserts between block 36 and 37 in window B D Chicken 15bp Alignment block 37 of 317 in window, 56742572 - 56742606, 35 bps B D Mouse ctcagtgagaacaaga---aaaaagtttctttctggga B D Rat cccagtgagagcaagg---aaaaagtttctttctggga GCF_003668045 cctagtgagagcaaga---gaaaagtttctttctggga Beaver gtcagtaagaccgtga---gaaaagtttctttctggga B D Squirrel gccactgaggccgtga---gaaaagtttttttctggga B D Guinea pig gccactgaggccagga---acaaagtttcttcctggca B D Rabbit gctaccgaggccgtgc---gtcaagtttctttctggaa B D Pika gctaccgaggccgtgcgaagcaaagtttctttctggaa B D Human gccactgaggcggtgc---ggaaagtttctgtctggga B D Chimp gccactgaggcggtgc---ggaaagtttctgtcttgga B D Bonobo gccactgaggcggtgc---ggaaagtttctgtcttgga B D Gorilla gccactgaggcggtgc---ggaaagtttctgtctggga B D Rhesus gccactgaggcggtgc---ggaaagtttctgtctggga B D Marmoset gccattgcggccctgc---ggaaagtttctgtctggtt B D Tarsier cccactaaggccgtga---gaaaagtttctttttggga B D Bushbaby gccactgaggccacgg---taaaagtttcttcctggga B D Tree shrew tccactgaggccgtgc---gaaaagtttctttctggga B D Malayan flying lemur gccactgaggccttgc---gaaaagtttctttctggaa B D Pig gccactgaggccacga---gaaaagtttctttctggga B D Dolphin gccactgaggccacgc---gaaaagcttctttctggga B D Cow gccactaaggccacac---gaagagtttctttctggga B D Sheep gccactaaggccacac---gaagagtttctttctggga B D Horse gccactgaggccgtga---gaaaagtttctctctggga B D Chinese pangolin gccactgaagcggggc---gaaaagtttctttctggga B D Dog gccactggggctgtgc---gaaaagtttctttttggga B D Hawaiian monk seal gccactgaggctgtgc---gaaaagtttctttttggga B D Hedgehog gccaccgaggccgcgc---agaaggtctctccctggga B D Shrew gtcactgaggccgagc---gaaaagtttctttctggga B D Elephant tccactgaggccgtgc---gaaaagtatctttctggga B D Tenrec tccactgaggccgtgc---gaaaagtttctttctggga B D Opossum agcactaaggagatag---cgaaaatttgttcttggaa B D Zebrafish ====================================== B D X. tropicalis ====================================== B D Chicken ====================================== Alignment block 38 of 317 in window, 56742607 - 56742842, 236 bps B D Mouse gtgcggaactgg---ggccgggttggtgt-actgctcagagcaatgggtgagtggctg----------at B D Rat gtgcggaactgg---ggccgggttggtgt-actgctcggagcaatgggtgagtgactg-----------c GCF_003668045 gtgcggaactgg---ggccgggttggtat-actgctcggagcaatgggtgagtggcgg-----------c Beaver gtgcggaactgg---ggcccggttggtgt-gctgctcggagcaatgggtgagtggcgg-----------c B D Squirrel gtgtggaactgg---ggcccggttggtgt-actgttcggagcaatgggtgagtggcgg-----------c B D Guinea pig gtgcagaactgg---ggccgggttggtgt-gctgctcggagcaatgggtgagtggctg-----------c B D Rabbit gtgcgg-gacag---ggccgggctggtgt-acggctcggagcaatgggtgagtggctg-----------c B D Pika gcgcag-cctag---ggccggcttggggt-acggctcggagcaatgggtgagtggctg-----------c B D Human gtgcggaactgg---ggccgggttggtgt-actgctcggagcaatgggtgagtggcgg-----------c B D Chimp gtgcggaactgg---ggccgggttggtgt-actgctcggagcaatgggtgagtggcgg-----------c B D Bonobo gtgcggaactgg---ggccgggttggtgt-actgctcggagcaatgggtgagtggcgg-----------c B D Gorilla gtgcggaactgg---ggccgggttggtgt-actgctcggagcaatgggtgagtggcgg-----------c B D Rhesus gtgcggaactgg---ggccgggttggtgt-actgctcggagcaatgggtgagtggcgg-----------c B D Marmoset gtgcggaactgg---ggccgggttggtgt-actgctcggagcaatgggtgagtggcgg-----------t B D Tarsier gtgcggaactgg---ggccgggttggtgt-actgctcggagcaatgggtgagtggcgg-----------c B D Bushbaby gtgcggaactgg---ggcccagttggtgt-actgctcggagcaatgggtgagtggcgg-----------c B D Tree shrew gtgtggaactgg---agccgggttggtgt-actgctcggagcaatgggtgagtggcgg-----------c B D Malayan flying lemur ctgcggaactgg---ggcccggctggtgt-actgctcggagcaatgggtgagtggcgg-----------c B D Pig gtgtggagcttg---ggccccgttggtgt-actgctcggagcaatgggtgagtggtgg-----------c B D Dolphin gtgcggagctgg---ggcccggttggtgt-actgctcggagcaatgggtgagtggcgg-----------c B D Cow gcgcggaactgg---ggcccggttggtgt-actgctcggagcaatgggtgagtggcgg-----------c B D Sheep gtgcggaactgg---ggcccggttggtgt-actgctcggagcaatgggtgagtggcgg-----------c B D Horse gtgcggaactgg---ggcccggtcggtgt-actgctcggagcaatgggtgagtggcgg-----------c B D Chinese pangolin gtgcggaactgg---ggcccggttggtgt-actgctcggagcaatgggtgagtggcgg-----------c B D Dog gttcggaactgg---ggcccctttggtgt-actgctcggagcaatgggtgagtggcgg-----------c B D Hawaiian monk seal gctcggaactgg---ggccccgttggtgt-atagctcggagcaatgggtgagtggcgg-----------c B D Hedgehog gcgcggagccgg---ggcgcggcgggtgt-cctgcccggagcgatgggtgagcggcgg-----------c B D Shrew gtgtcgaactgg---ggccccgtggctgt-actgctcggagcaatgggtgagtggcgg-----------c B D Elephant gaacggaacagg---ggcccggttggtgt-actgctcggagcaatgggtgagtggcgg-----------c B D Tenrec gaacagaactgg---agcccggttggtgt-actgcttggagcaatgggtgagtggcgg-----------c B D Opossum ttctagagtc-------tcttattggtgtccccgctcaaagcaatgggtaagtggttgcctgttgtatcc B D Chicken gtggggatttagggcggccccggaggtgt-cccgctcggaggaatgggtgagtgctgg-------gatcc B D Zebrafish ====================================================================== B D X. tropicalis ====================================================================== Mouse ggggg-a-------cgt-tgtc-agatccg-------a-------------------------------- Rat ggggg-a-------cgt-tgtc-agaaccg-------a-------------------------------- GCF_003668045 gggga-a-------cgc-tgtc-agaaccg-------a-------------------------------- Beaver ggggg-a-------cgc-tgtc-agaaccg-------a-------------------------------- Squirrel ggggg-a-------cgc-tgtc-agaaccg-------a-------------------------------- Guinea pig ggggg-c-------tgc-tgtc-agagccg-------g-------------------------------- Rabbit ggggg-c-------cgc-tgtc-agagcgg-------c-------------------------------- Pika gggggcc-------cgc-tgtcaagagcgg-------c-------------------------------- Human ggggg-a-------ctc-tgtc-agagccg-------g-------------------------------- Chimp gggag-a-------ctc-tgtc-agagccg-------g-------------------------------- Bonobo ggggg-a-------ctc-tgtc-agagccg-------g-------------------------------- Gorilla ggggg-a-------ccc-tgtc-agagccg-------g-------------------------------- Rhesus ggggg-a-------ctc-tgtc-agagccg-------g-------------------------------- Marmoset ggaag-a---------c-tgtc-ggagccg-------c-------------------------------- Tarsier ggggg-a-------cac-tgtc-agagccg-------g-------------------------------- Bushbaby gggcg-a-------ctc-tgtc-aaagccg-------t-------------------------------- Tree shrew ggggg-a-------cgc-tgtc-agagcgg-------a-------------------------------- Malayan flying lemur ggggg-a-------cgc-tgtc-agagccg-------a-------------------------------- Pig ggggg-a-------cgcttgac-agagcct-------g-------------------------------- Dolphin ggggg-a-------cgc-tgtc-agaaccg-------g-------------------------------- Cow agggt-a-------cgc-tgtc-agagccg-------g-------------------------------- Sheep ggggt-a-------cgc-tgtc-agagccg-------g-------------------------------- Horse ggggg-a-------cgc-tgtc-agagtcg-------g-------------------------------- Chinese pangolin ggggg-a-------cgc-tgtc-agagctg-------t-------------------------------- Dog gggga-a-------cgc-tgtc-agagccg-------g-------------------------------- Hawaiian monk seal ggggg-a-------cgc-tgtc-agagccg-------g-------------------------------- Hedgehog gaggg-c-------ggc-tgtc-agcgcc----------------------------------------- Shrew gggga-c--------gc-tgtc-agcgccg-------g-------------------------------- Elephant gaggg-a-------cgc-tgtc-agagccggggaggag-------------------------------- Tenrec ggggg-a-------cgc-tgtc-agagccg-------g-------------------------------- Opossum gcgaa-atattcagtgc-tgtc-agactgg-------gtgtggggaaaaagtggcggggggtggggggga Chicken gcggg-g-------ggc-tgtc---------------a-------------------------------- Zebrafish ====================================================================== X. tropicalis ====================================================================== Mouse ------------------------------ggagggagggagcga------------------------- Rat ------------------------------ggagggagggagcga------------------------- GCF_003668045 ------------------------------ggagggagggagtga------------------------- Beaver ----------------------ga----agggagggagggagcga------------------------- Squirrel ----------------------gaagggagggagggagggagcga------------------------- Guinea pig ------------------------------agagggagggagcgg------------------------- Rabbit ------------------------------ggcgg----------------------------------- Pika ------------------------------ggagggagggaggga------------------------- Human ----------------------gaag----ggagggagggagcga------------------------- Chimp ----------------------gaag----ggagggagggagcga------------------------- Bonobo ----------------------gaag----ggagggagggagcga------------------------- Gorilla ----------------------gaag----ggagggagggagcga------------------------- Rhesus ----------------------gaag----ggagggagggagcga------------------------- Marmoset ----------------------gaag----ggagggagggagcga------------------------- Tarsier ----------------------caag----ggagggcgggagcgg------------------------- Bushbaby ----------------------gaag----ggagggagggagcga------------------------- Tree shrew ----------------------gaag-----gagggagggagcga------------------------- Malayan flying lemur ----------------------gaag----agagggagggagcga------------------------- Pig ----------------------gaag----ggagggagggagcaa------------------------- Dolphin ----------------------gaag----ggagggagggagcga------------------------- Cow ----------------------gaaa----ggagggagggagcga------------------------- Sheep ----------------------gaag----ggagggagggagcga------------------------- Horse ----------------------caag----ggagggagg----ga------------------------- Chinese pangolin ----------------------gaag----ggagggagggagcga------------------------- Dog ----------------------ggag----ggagggagggaagga------------------------- Hawaiian monk seal ----------------------gaag----ggagggagcgaacca------------------------- Hedgehog -------------------------g----ggcgggagggaggga------------------------- Shrew ----------------------gaag----ggagggagggagaga------------------------- Elephant ----------------------ggag----ggagggagggagcgagcgagcgagcgagcgagcgggcggg Tenrec ----------------------gcag----ggagggagggagcga------------------------- Opossum ggagagaatgagaagagggggagaga----ggagagagagagaga------------------------- Chicken ------------------------------agagagagggagccc------------------------- Zebrafish ====================================================================== X. tropicalis ====================================================================== Mouse ---gcaggcg--------agggctagagggaggga--------gctgaggcg------------------ Rat ---gcaggcg--------agggctagagggaggga--------gctgaggcg------------------ GCF_003668045 ---gcaggcg--------agggcgagagggaggga--------gctggggcg------------------ Beaver ---gcgggcg--------agggagggagggaggga----gagcgagggcgcg------------------ Squirrel ---gcgggcg--------agggagggagggaggga----gtgcgagggcgcg------------------ Guinea pig ---gcgagcg--------ggcgggcgcgcgagggc----gcgctcggaggag------------------ Rabbit ---acgggcg--------ttccgctgattgacttt----gctcg-------------------------- Pika ---gcgggcg--------ggccagggcgggagggc----gcccgcagaggcg------------------ Human ---gcgggca----agggagggagggagggaggga----gcgcgagggcgcg------------------ Chimp ---gcgggca--------agggagggagggaggga----gcgcgagggcgcg------------------ Bonobo ---gcgggca--------agggagggagggaggga----gcgcgagggcgcg------------------ Gorilla ---gcgggca--------agggagggagggaggga----gcgcgagggcgcg------------------ Rhesus ---gcgggcg----agggagggagggagggaggga----gtgcgagggcgcg------------------ Marmoset ---gcgagag--------agggagggagggaggga----gcgagagggcgcg------------------ Tarsier ---gcgtgcgtgcgggcgggcgagggagggaggga----gcgagagggcgcg------------------ Bushbaby ---gcgggcg------------agggagggagggc----gcgcaagggcgcg------------------ Tree shrew ---gcgg------------gagagggagggaggga----gcgcgagggcgcg------------------ Malayan flying lemur ---gcgggctaggaagggagggagggagggaggga----gcgcaagggcgcg------------------ Pig ---gcgggcg--------agggagggagg--------------gagggcacg------------------ Dolphin ---gcgggcg--------agggagggagggagggc----gcgcgagggcgcg------------------ Cow ---gcgggcg--------agggagggagg--------------gagggcgcg------------------ Sheep ---gcgggcg--------agggagggagg--------------gagggcgcg------------------ Horse ---gcgagct--------ggcgagggagggaggga----gcgcgagggcgcg------------------ Chinese pangolin ---gcgagcg--------agcgagggagggaggga----gagcaagggcgcg------------------ Dog ---gaaggcg--------agggagggagggaggga----gcgcgagggcgcg------------------ Hawaiian monk seal ---gagggcg--------agggaggaagggaggga----gcgcgagggcgcg------------------ Hedgehog ---gcgggcg--------ggaggcggaggg--------------agggcgcg------------------ Shrew ---gcgggcg--------agggagggaggga--------gcgccagggcgcg------------------ Elephant cgggcgggcg--------cgggagggagggagggctcgggcgcgagggcgcg------------------ Tenrec ---gcggtcg--------cgagaaaggagggaggcgcgggcgcgagggcgcg------------------ Opossum ---gagagag--------agagagagagagagaga----gagagagagagagagagagagagagagagag Chicken --------cg--------tgc------------------ccgcgccgtcatg------------------ Zebrafish ====================================================================== X. tropicalis ====================================================================== Mouse -----------------------------------cgccaccgcgctg------------tattgactca Rat -----------------------------------cgccaccgcgctc------------tattgactca GCF_003668045 -----------------------------------cgcaaccgcgctc------------tattgactca Beaver -----------------------------------cgccactgagcgcttacactctccttattgacttt Squirrel -----------------------------------cgccactgagcgctcacactctccttattgacttt Guinea pig -----------------------------------cgcgctcg-gctc----------cgtgttgacttt Rabbit ---------------------------------------------------------------------- Pika -----------------------------------c---------------------------------- Human -----------------------------------cgccactaggcgctcacattctc--tattgacttt Chimp -----------------------------------cgccactaggcgctcacattctc--tattgacttt Bonobo -----------------------------------cgccactaggcgctcacattctc--tattgacttt Gorilla -----------------------------------cgccactaagcgctcacattctc--tattgacttt Rhesus -----------------------------------cgccactaggcgctcacattctc--tattgacttt Marmoset -----------------------------------cgccactaagcgctcacattttc--tattgacttt Tarsier -----------------------------------cgccactaagcgctcacactctccttattgacttt Bushbaby -----------------------------------cgccactaagggctcgcactcttcttattgacttt Tree shrew -----------------------------------cgccaccgagcgctcacactctccttattgacttt Malayan flying lemur -----------------------------------cgccactgagcgctcacactctccgtattgacttt Pig -----------------------------------cagcacagagcgcttacattctccttattgacttt Dolphin -----------------------------------caccactgagcgcttacactctccttattgacttt Cow -----------------------------------caccactgagcgctcacactctccttattgacttt Sheep -----------------------------------caccactgagcgctcacactctccttattgacttt Horse -----------------------------------cactactgagcgctcgcactctccttattgacttt Chinese pangolin -----------------------------------caccactgagcgctcatactctccttattgacttt Dog -----------------------------------caccgctgagcgctcacactcttcttattgacttt Hawaiian monk seal -----------------------------------caccactgagcgctcacactcttcttattgacttt Hedgehog -----------------------------------cacccctgagcgctcacacgctccttattgacttt Shrew -----------------------------------caccactgagcgctcgcactttacttattgacttt Elephant -----------------------------------caccactgagcgctcaaactctccttattgacttt Tenrec -----------------------------------cgccactgggcgctcgcaccctccttattgacttt Opossum agagagagagagagagagagagagagagagagatttgttgccggagagtcacaacttgcttattgacttt Chicken -----------------------------------tgccaccgcg---------gctccttattgacttt Zebrafish ====================================================================== X. tropicalis ====================================================================== Mouse gactgcgtccgt-cgagctg-taagcaccctccaagggtcagtggcg-gaaagggttct--gtgag-a-- Rat gaccgcgtccctacgagttg-tatgcacacgccaagggtcagcggct-aaaagggtgct--gtggg-a-- GCF_003668045 gaccgcgtccccaagagctg-tacgagcatgccaagggtcagcggcg-acaggggtgca--atggg-aac Beaver gctcgtgttcctacaagttg-taggaacacgctaagggtcagcggcgcacagcagttca--atctg-atc Squirrel gctcgtgttcctacaagttg-taggaacacgctaagggtcagcgacgcacagcagttca--atccg-aac Guinea pig gctcttgttcctacaagttg-aaggaactggccaagggtcagaggcttgcggtggttcc--gtgcg-aac Rabbit ------gttactgctgggtg-taggactgcgccaagggccagcggcgcacggcggtccg--gtgtg-cgc Pika --ccccgctcccgctgag-----ggacttgggtgggttcctaccacgcgtcccgggac------tg-cgc Human gctcgtgttcctacaagttg-taggaacacgctaagggtcagcggcgcacagcagttca--atgtg-aac Chimp gctcgtgttcctacaagttg-tagaaacacgctaagggtcagcggcgcacagcagttca--atgtg-aac Bonobo gctcgtgttcctacaagttg-tagaaacacgctaagggtcagcggcgcacagcagttca--atgtg-aac Gorilla gctcgtgttcctacaagttg-taggaacacgctaagggtcagcggcgcacagcagttca--atgtg-aac Rhesus gctcgtgttcctacaagttg-taggaacacgctaagggtcagcggcgcacagcagttca--acgtg-aac Marmoset gctcgtgttcctacaagttg-taggaacacgctaagggtcagcggcgcacaggagttca--atgtg-aac Tarsier gctcgtgttcctacaagttg-taggagcacgctaagggtcagcggcgcatagcagttcc--gtctg-aac Bushbaby gctcgtgttcctacaagttg-taggaacacgctaagggtcaacggcgcatagcagttca--gtctg-aat Tree shrew gctcgtgttcgtacaagttg-taggaacacgctgagggtcagcggcgcacagcagttca--gcctg-aac Malayan flying lemur gctcgtgttcctacaagttg-taggaacacgctaagggtcagcggcgc---gcggttca--gtctg-aat Pig gttcatgttcctacaagttg-taggaacactctaagggtcagcggcgcacagcagttcc--gtctg-aac Dolphin gctcgtgttcctacaacttg-taggaacacgctaagggtcagcgacgcacagcagctca--gtctg-aac Cow gctcatgttcctacaagttg-taggaacacgctaagggtcagcggctcgcagctgttca--gtctg-aac Sheep gctcgtgttcctacaagttg-tgggaacacgctaagggtcagcggctcgcagcagttca--gtctg-aac Horse gctcgtgttcatacaagttg-tagg-acccgctaagggtcggcgtcgcacagcagttca--gtctg-aac Chinese pangolin gctcgcgttcctacaagttg-taggaacacgccaagggtcatcggcatacagcagttca--gtctgaaac Dog gctcgtgttcctacaagttgttaggaacgcgctaagggtcag-ggcgcacggcagttcagtgtgtg-aac Hawaiian monk seal gctcgtgttcctacaagttgttagaaacacgctaagggtcag-ggcacacagcagttca--gtatg-aac Hedgehog gctcgtgttcctacacgttg-tagcaacacgccaagggtcagcggcgcacggcagctgc--gtctg-cac Shrew gctcgtgttcctacaagttg-taggaacacgctaagggtcagtggcgcgcagcagttca--gtctg---- Elephant gttcgtgttcctacaaatag-taggaacgctctaagggtcagcggtgcacagcagttca--ttctg-att Tenrec gctcgagttccttcaagttg-tgggaacacgttaagggtcagcggtgcacagcagttct--ttctg-atc Opossum gctcatgtttctacaagttg-taacaatgagttaaaggtcaacagtacagagtagagag--atcta-atg Chicken actcgtgtttctacacgtcg-ggacagcgcgccgaggggcag-agcggggaggaggaaa--agcta-a-- Zebrafish ====================================================================== X. tropicalis ====================================================================== Mouse ----gcca--------ctgggtg-acaa---tt-gatgccat-t Rat ----gcta--------ccgagtg-gcag---tt-gatgccat-t GCF_003668045 tcccgcta--------cagggtg-gcag---tt-aatgccag-g Beaver gctggcta--------ctgggtt-gctg---tt-gatgccat-t Squirrel gctggcta--------ctgggtt-tctg---tt-ggtgccat-t Guinea pig gctggcta--------ctgggtt-gctg---tt-gatgccat-t Rabbit gccggctg--------ctgggct-gctg---tt-gatgcgggag Pika gcctgcta--------ccggggtggctg---tg-gatgccccgt Human gctggcta--------ctgggtg-gctg---tt-gatgccat-t Chimp gctggcta--------ctgggtg-gctg---tt-gatgccat-t Bonobo gctggcta--------ctgggtg-gctg---tt-gatgccat-t Gorilla gctggcta--------ctgggtg-gctg---tt-gatgccat-t Rhesus gctggcta--------ctgggtg-gctg---tt-gatgccat-t Marmoset gctggcta--------ctggctg-gcta---tt-gatgccat-t Tarsier gtgggcta--------ccgggct-gcgg---tt-gatgccat-t Bushbaby actggcta--------ctgggtc-actg---tt-gatgctat-t Tree shrew tctggcta--------ccgggtt-gctg---tt-gatgccat-t Malayan flying lemur ggtagctg--------ctgggtg-gctg---ct-gatgccat-t Pig gatggcta--------ctggggt-gctgctttt-gatgccat-t Dolphin gcgggcta--------ctgggtt-gctgctgtt-gatgccat-t Cow gctggcta--------ctgggtt-gctgctgtt-gatgccat-t Sheep gctggcta--------ctgggtt-gctgctgtt-gatgccat-t Horse gctggctc--------ctgggtt-gctg---tt-catgccat-t Chinese pangolin actggcta--------ctgggct-gctg---gc-gatgccat-t Dog gctggcta--------ctgggtt-gctg---tt-gatgccat-t Hawaiian monk seal gctggcta--------ctgggtt-gctg---tt-gatgccat-t Hedgehog cctggctacctacagcctg-----gctg---ct-gatgcccc-t Shrew -attgcta--------ctg-----gcta---ctaggtgccgt-t Elephant gctggttg--------ctgcgtt-gttg---tt-gatgccgt-t Tenrec tccggtag--------ctgggtt-ctta---tc-gatgccat-t Opossum ggtgg-----------ctgagtg-atta---tt-aaagcaat-t Chicken --tgactg--------ctcggtttatta---tt-aatgttat-t Zebrafish ============================================ X. tropicalis ============================================ Inserts between block 38 and 39 in window B D Opossum 189bp Alignment block 39 of 317 in window, 56742843 - 56742890, 48 bps B D Mouse ttgcga-ttt--aagggaagagggccgtggcatt-ggcgaatctcgc-ag----ctc B D Rat tcccga-ttt-taacagacgagggccgtggcact-ggcgagtctctc-aa----ccc GCF_003668045 ttttga-ttt-taa-----gagggccatggcacg-ggagagtcccgc-ag----ctc Beaver ttctga-tttttaagagaagggagccgaggcatc-agcgagccccgcaaa----ctc B D Squirrel ttctga-ttt-taagagaaaggagctgtggcatt-ggcgagctctac-ag----ctc B D Guinea pig ttctga-ttt-tgagaaaaggcagctgtggcatc-agcgagccccgc-ag----ctc B D Rabbit tcctga-ttt-taa--acagcgcagcgtggcatc-agagagccccgc-ag----ccc B D Pika gcccg------------------ggcgtggcatc-gcagagtccccc-agtgccccc B D Human ttctga-ttt-taagagaagggagctgtggcatc-agcgagcccctc-ag----ccc B D Chimp ttctga-ttt-taagagaagggagctgtggcatc-agcgagcccctc-ag----ccc B D Bonobo ttctga-ttt-taagagaagggagctgtggcatc-agcgagcccctc-ag----ccc B D Gorilla ttctga-ttt-taagagaagggagctgtggcatc-agcgagcccctc-ag----cgc B D Rhesus ttctga-ttt-taagagaagggagctgtggcatc-agc--gccccgc-ag----ccc B D Marmoset ttctga-ttt-taagagaagggaactatggcatc-agcaagccccgc-ag----ccc B D Tarsier ttctga-ttt-taagaggagggggctgcggcgtc-agcgagccccgc-ag----ccc B D Bushbaby ttctga-ttt-taagagaagggagctgtgccatc-agcgagcgccac-ag----ccc B D Tree shrew ttctgatttt-taagaggcgggagctgaggctgc-agtgaa-cccgc-ag----ccc B D Malayan flying lemur ttctga-ttt-taagagaagggagttatggcatc-agcgagccccgc-ag----ccc B D Pig ttctga-ttt-caagaggagggagccaaggcatc-agcaacccccgc-ag----cgc B D Dolphin ttctga-ttt-caagagtagggagaggttgcatc-agcaagccccgc-gg----tcc B D Cow ttttga-ttt-caagactagggagcggtggcatc-agcaagccccgc--g----ccc B D Sheep ttctga-ttt-caagactagggagcggtggcatc-agcaagccccgc--g----ccc B D Horse ttctga-ttt-taggagaatagaggggtggcatc-ggcaagccctcc-ag----ccc B D Chinese pangolin ttctga-ttt-taagagaagggagaggtagcatcaagcaagccctgc-ag----tcc B D Dog ttctga-tct-taaaacaagggagcggtggcatc-agcaagccctgt-ag----cct B D Hawaiian monk seal ttctga-tat-taaaggaagagagcggtggcatc-agcaagctccgt-ag----cct B D Hedgehog t--------t-ggagaggagggagtggtggcatc-agcaggtcccgc-gg----ccc B D Shrew t--------t-tccgagaagtgagcgctggcatt-agcaagccccgc-gg----ccc B D Elephant ttctga-ttt-taagaggaaggagctgtggtatc-agcgagccccgc-aa----ccc B D Tenrec ttctga-ttt-taagagaagggagctgtggcatt-accgagtccccc-aa----ccc B D Chicken atgcga-ccg-tgaggca---gaatcgcagcaga-atggatggccgc-ag----ccc B D Zebrafish ========================================================= B D X. tropicalis ========================================================= B D Opossum ========================================================= Inserts between block 39 and 40 in window B D Chicken 630bp Alignment block 40 of 317 in window, 56742891 - 56743019, 129 bps B D Mouse cagtgtcaat-cca---agttttgttgca----cacgtgtttacac------tt--------gc------ B D Rat cagtgtcaat-cca---agttttgttgca----cacgtgtttacac------tt--------gc------ GCF_003668045 cagtgtcaat-cca---agttttgttgca----cacgtgtttacac------at--------gc------ Beaver cagtggcatt-tca---agttttgt--------------ttcactc------ac--------gc------ B D Squirrel cagtggaaac-cca---agttttgt--------------tttacac------ac--------gc------ B D Guinea pig caggagcaat-ccc---aatttcatttca----cacacacacacac------ac--------ac------ B D Rabbit cggtggcaat-cca---agccgtgtttcc----cacgcgcgcacgc------acggacgctcgc------ B D Pika ggggggccac-ccg---aggtgtgtttcg----cttgcgcgcacacaagccaacgaa-----gc------ B D Human gagtagcaaa-cca---agttttgtttca----cacgcgcgcacac------at--------gc------ B D Chimp gagtagcaaa-cca---agttttgtttca----cacgcgcgcacac------at--------gc------ B D Bonobo gagtagcaaa-cca---agttttgtttca----cacgcgcgcacac------at--------gc------ B D Gorilla gagtagcaaa-cca---agttttgtttca----cacgcgcgcacac------at--------gc------ B D Rhesus cagtagcaaa-cca---agttttgtttca----cacgcgcgcacac------ac--------gc------ B D Marmoset ccgtagcaaa-cca---agttttgcttca----cacgcgcgcatac------ac--------ac------ B D Tarsier cagtagcaaa-cca---agttttgtttcg----cacgcgcgcacac------at--------gc------ B D Bushbaby cagtagcaaa-cca---agttttgtttca----cagacgctcacgc------at--------gc------ B D Tree shrew tggtagcaaa-ctactggggtttgtttct----cctacgcgcacac------ac--------gc------ B D Malayan flying lemur cagtagcaaa-cca---agttttgttccg----tacacgcgcacac------ac--------tc------ B D Pig cagtggcgga-cca---aattttgtttta----cacacaggcagac------ac--------gcagaaaa B D Dolphin cagttgcgga-cca---aattttgtttca----catacacgcagac------ac--------gggg---- B D Cow cggtggcgga-cca---aattttgtttcg----cgtaca------------------------------- B D Sheep cggt-gcgga-cca---aatt------------------------------------------------- B D Horse tagaggcgga-cca---agttttgtttca-atacacacacacacgc------------------------ B D Chinese pangolin cagtggcggg-cca---ggttttgtttcatctacacgcagacacac------------------------ B D Dog cggtggcgga-cca---agttttgtttca----cataaactcacac------a----------------- B D Hawaiian monk seal cagt-gcgga-cca---agttttgtttca----cacaaactcacgc------------------------ B D Hedgehog caatgagggatcga---tttttttattct----cgtgtccgctcac------cc--------gc------ B D Shrew cagcgacg---cca---aattttgtttca----catactcgtccac------ac--------gg------ B D Elephant cagtggcaga-cta---agttttgtttca------------cacac------ac--------gc------ B D Tenrec cagtggcaga-cca---agttttgtttca------------gacac------at--------gt------ B D Zebrafish ====================================================================== B D X. tropicalis ====================================================================== B D Opossum ====================================================================== B D Chicken ====================================================================== Mouse -----aagcaaaa---------cagaac---------------------aaa--------aac------- Rat -----aagcaaaa---------cagaac---------------------aaa--------aac------- GCF_003668045 -----aaacaaaa---------cagaac---------------------aaa--------aac------- Beaver -----aaagagaa---------cagaaa---------------------aaa--------aaa------- Squirrel -----acacacac---------gcaaac---------------------aaa--------aac------- Guinea pig -----acacacac---------acacac---------------------aca--------cac------- Rabbit -----aaacaaaa---------cagcca---------------------a-a--------aca------- Pika -----agaacaaa---------cagaca---------------------aga--------acc------- Human -----aaacaaaa---------caggaa---------------------aag--------aaaagaaaag Chimp -----aaacaaaa---------cag--------------------------g--------aaaagaaaag Bonobo -----aaacaaaa---------caggaa---------------------aag--------aaaagaaaag Gorilla -----aaacaaaa---------caggaa---------------------aag--------aaaagaaaag Rhesus -----aaacaaaa---------caggaa---------------------aac--------aaaacaaaac Marmoset -----aaacaaaa---------cagg-----------------------------------agggaaaaa Tarsier -----aaaccaaa---------cagg------------------------------------aggaggga Bushbaby -----aaacaaaa---------cagaaa---------------------aaa--------aagagagaaa Tree shrew -----aaacaaaa---------caggaa------------------------------------------ Malayan flying lemur -----agacaaaa---------caacaa---------------------ca------------------- Pig caaccaaacaaaaaaacccaaccagaaa---------------------aaa--------aga------- Dolphin -cggggggtaaaaaacgccaaccagaaa---------------------aaa--------aga------- Cow -cagggtacaaaagccaaccaagaaaaa---------------------aaa--------aga------- Sheep -----aaacaaaaaaaaaaaaaaaaaaa---------------------aaa--------aga------- Horse -----aaacaaaa---------cagaaa---------------------aaa--------aac------- Chinese pangolin -----aaacgaaa---------cagaaa---------------------aat--------acc------- Dog -----actcagaa---------caggaaaaaaccaaaccaaaccaaaacaaa--------aca----acc Hawaiian monk seal -----actcagaa---------caggaa---------------------aaa--------aaa----tcc Hedgehog -----aaactcaa---------cagcgg---------------------tgggggaaaaagaa------- Shrew -----caacaaaa---------cggagg---------------------agg--------gaa------- Elephant -----agacaaaa---------cagaaa---------------------aa------------------- Tenrec -----aaacaaaa---------caaaac---------------------aaa--------aca------- Zebrafish ====================================================================== X. tropicalis ====================================================================== Opossum ====================================================================== Chicken ====================================================================== Mouse --accc------------------ccc-ccccagctt--------------tctctgg------actgc- Rat --accc------------------cccgccccagttt--------------tccctag------gctgc- GCF_003668045 aaaaca------------------acc-cctcagctt--------------tccctga------actcc- Beaver aaat------------------------ctctagctt--------------cccctag------acgtt- Squirrel --------------------------t-ttccagctt--------------cccctag------acttt- Guinea pig --accc------------gaaaaactc-ctccaggctaacaacagcgcgcatctcggg------acgca- Rabbit --acaa--------------------c-cccaaactc--------------tctctagctttgccctacg Pika --acta------------tcacccccc-cccaaactc--------------tccctcg------cccac- Human aaaacaaacaacaacaaataaaacacc-ctctagctt--------------cccctag------acttt- Chimp aaaacaaacaacaacaaataaaacacc-ctctagctt--------------cccctag------acttt- Bonobo aaaacaaacaacaacaaataaaacacc-ctctagctt--------------cccctag------acttt- Gorilla aaaaca---aacaacaaataaaacacc-ctctagctt--------------cccctag------acttt- Rhesus aaaacaaacaacaac-aacaacacacc-ctctagctt--------------cccctag------acttt- Marmoset aaagca--------------------c-ctctagctt--------------ctcctag------acttt- Tarsier aaaacaatc-----------------c-cttcagctt--------------cccctag------acttt- Bushbaby aaaatc--------------------c-ctctagctt--------------cccctag------acttt- Tree shrew --aatc--------------------c-ctctagctt--------------ccctgga------ct--t- Malayan flying lemur acaaga--------------------t-cttcagctt--------------cccctag------gc--t- Pig ------------------------------------------------------ctag------atctt- Dolphin ------------------------------------------------------ctag------acttt- Cow ------------------------------------------------------ctag------acttt- Sheep ------------------------------------------------------ctag------acttt- Horse ----------------------------ctgtggttt--------------tccctgg------ccctt- Chinese pangolin -------------------------------tagttt--------------cccctag------aactt- Dog aaacca--------------------a-ccgtagttt--------------ctcctag------acctt- Hawaiian monk seal aaacca--------------------a-ctgtagttt--------------ctcctag------acctt- Hedgehog --gtac--------------------c-cggtagtta--------------cgtccag------acctt- Shrew --ctcc--------------------c-cagtagttt--------------ccccaag------atctt- Elephant --------------------------t-ctctagctt--------------ctcctag------acctt- Tenrec -aaaat--------------------t-ctctagctt-----------------ctag------accta- Zebrafish ====================================================================== X. tropicalis ====================================================================== Opossum ====================================================================== Chicken ====================================================================== Mouse ----g---tctaaccccgca-ga----agggagggg---------taagg-------------------c Rat ----g---tctaacccctct-ga----agggagggg---------taagg-------------------c GCF_003668045 ----g---tctaatagcgct-gg----ggggagggg--------ataaga-------------------a Beaver ----g---tctaatcccgcg-ggtctccgggagcggcgctggggatgaga-------------------c Squirrel ----g-----------cgcg-ggtctccgggagcggcgctggtgacgagt-------------------t Guinea pig ----gcgatggagaccgggt-ggtggtggagaggagaggagaggagagga-------------------g Rabbit cttgg---tccagctgcgcg-ggtcttcgggcggggcgcgggggaggggg-------------------c Pika --cgg---acca-ccgcgcg-ggtctccgggacgggcgccggggagag---------------------- Human ----g---tttaactggccg-ggtctccagaaggaacgctggggatggga-------------------t Chimp ----g---tttaactggccg-ggtctccagaaggaacgctggggatggga-------------------t Bonobo ----g---tttaactggccg-ggtctccagaaggaacgctggggatggga-------------------t Gorilla ----g---tttaactggccg-ggtctccagaaggaacgctggggatggga-------------------t Rhesus ----g---tttaactgcccg-ggtctccagaaggaaagctggggatggga-------------------t Marmoset ----g---tttaactgcccg-ggtctccaggaggaacgctggggatggga-------------------t Tarsier ----g---tctaactgcgcg-ggtctccaggcggggcgctggggatgggg-------------------t Bushbaby ----g---tctaacagcaca-ggtcttcaagagg-gtgctgggagcggtc-------------------t Tree shrew ----g---tctac-tgcgcg-gctcctcagcc--tgcagtaggggtgggg-------------------t Malayan flying lemur ----g---tctaagtgcgcg-ggtctccaggcggggccctggggatgggg-------------------t Pig ----g---tctaattgcgca-ggtcccaaggcggggcgctggggatcaag-------------------g Dolphin ----g---tctaattgcgca-ggtcccaaggcggggcgctggggatcaag-------------------g Cow ----g---tctaattgcgca-ggtccctaggcggggcgctggggatcaaa-------------------g Sheep ----g---tctaattgcgca-ggtccctaggcggggcgctggggatcaag-------------------g Horse ----g---tctaatcgcgca-ggtccccgggcggggcgctagggatcaag-------------------g Chinese pangolin ----g---tcaaattgcgca-agtccccacgcggggctctggggatcaag-------------------g Dog ----g---cctaattgcgcc-ggtccccaggccgggcgctggggctcaag-------------------c Hawaiian monk seal ----g---tctaattgctccaggcccccaggcggggcgctggggctcaag-------------------g Hedgehog ----g---tctcagggcgca-ggtccccaggctgggcgcagggggtccagtggggctgggggagggggag Shrew ----g---tctaattgctta-ggatcacagg---------agggaactag-ggggataggaaggggggga Elephant ----g---tctgactacgg--ggtcctcgggtggggcgccgggattgagg-------------------a Tenrec ----g---tctgtctgcgc--gatcc-cgggcgggggggggggggggggg-------------------g Zebrafish ====================================================================== X. tropicalis ====================================================================== Opossum ====================================================================== Chicken ====================================================================== Mouse ggtggaagg Rat ggtggagag GCF_003668045 tgtggaggg Beaver ggtgctggg Squirrel ggtggtggg Guinea pig aggagagga Rabbit gggggcggg Pika gaggacgga Human gggtggaga Chimp gggtggaga Bonobo gggtggaga Gorilla gggtggaga Rhesus gggtggaga Marmoset gagt--aaa Tarsier gggtgggga Bushbaby gggagggaa Tree shrew gggggaggg Malayan flying lemur ggggaggag Pig --------- Dolphin --------- Cow --------- Sheep --------- Horse --------- Chinese pangolin --------- Dog --------- Hawaiian monk seal --------- Hedgehog --------- Shrew --------- Elephant --------- Tenrec --------- Zebrafish ========= X. tropicalis ========= Opossum ========= Chicken ========= Inserts between block 40 and 41 in window B D Human 4bp B D Chimp 4bp B D Bonobo 4bp B D Gorilla 4bp B D Rhesus 4bp B D Marmoset 4bp B D Tarsier 4bp B D Bushbaby 4bp B D Tree shrew 105bp B D Malayan flying lemur 2bp B D Pig 2bp B D Dolphin 2bp B D Cow 2bp B D Sheep 2bp B D Horse 2bp B D Chinese pangolin 2bp B D Dog 2bp B D Hawaiian monk seal 2bp B D Hedgehog 2bp B D Shrew 2bp Alignment block 41 of 317 in window, 56743020 - 56743091, 72 bps B D Mouse -----------gagcaa----gggc-cgagtgt-tttggtaccaggcaggcaaagaggggcgcg-ct-gg B D Rat -----------gagcag----gggc-tgggcgt-tcttgtgtcgggcagggaacgaagggcgcg-ct-gg GCF_003668045 -----------gagcaa----gggc-agaacgt-tttggtgccaagcaggcaaccaggga-gcg-ct-gg Beaver -----------gagcag---cggcc-caaggat-tttagtgccaagcaggcgaggaggggcgcg-tt-ca B D Squirrel -----------gaggag---cggcc-catggac-tttt----------ggctaggaggggcgcg-tt-cg B D Guinea pig -----------gaggagaggaggcc-caaggac-ttcaggatcgagg-ggcgatgtggggcgcg-tt-ca B D Rabbit -----------gagc------ggcc-cgagagc-ttccgtgcggagccggccagcgggtgcgcg-tt-ca B D Pika -----------gagc------ggccgcgggctc-tttggtgcggagccggccagtccgagcgcg-tt-cg B D Human -----------gagc------ggct-caaggac-tttagtgaggagcaggcgagaaggagcacg-tt-ca B D Chimp -----------gagc------ggct-caaggac-tttagtgaggagcaggcgagaaggagcgcg-tt-ca B D Bonobo -----------gagc------ggct-caaggac-tttagtgaggagcaggcgagaaggagcgcg-tt-ca B D Gorilla -----------gaac------ggct-caaggac-tttagtgaggagcaggcgagaaggagcgcg-tt-ca B D Rhesus -----------gagc------ggct-caaggac-tttagtaaggagcaggcgagaaggagcgcg-tt-ca B D Marmoset -----------gagt------ggcc-caagaaa-tttagtgaggagcaggctacaagcagcgcg-tt-ta B D Tarsier -----------gagc------ggcc-caagacc-ttgagcgaggagcagacgagaaggagcgct-ct-ca B D Bushbaby -----------gagc------agcc-taaggac-tttagtgcgcagcaggcgagaaggagcgtg-tt-ca B D Tree shrew -------------------------------------------gagcag--------------------- B D Malayan flying lemur -----------gaga------agcc-caaggac-tttggtgccgagcaggcgagaaggggcgcg-tt-ca B D Pig -----------gagc------ggcc-ccaggac-tttaaagctgagtaggcgagaaggagccta-ttaca B D Dolphin -----------gagc------ggca-caaggac-tttagcgccgagtaggcgagaaggagccgc-ttgca B D Cow -----------gagc------ggcc-caaggac-attagcgccgagtgggcgagaaggagccgctttgta B D Sheep -----------gagc------ggcc-caaggac-attagcgccgagtgggcgagaaggagccgctttgca B D Horse -----------cagc------ggcc-caaagac-tttagcgacgaccaggcgagaaggggccgg-tcgct B D Chinese pangolin -----------gaag------agcc-caagaac-ttttgcgtggagctggcgagaaggagccgc-ttgca B D Dog -----------tagc------ggcc-caaagacttttagcgccgagcagccgagaaggagccgg-ttgca B D Hawaiian monk seal -----------tagc------agcc-cagagac-tttagcgccgagaagccaagaaggagctgg-ttgca B D Hedgehog -----------gagc------gttc-caaggac-ttgagctccgaactggctaagagaagcggg-ttcca B D Shrew -----------gaga------ggcc-caatgac-ttcagcccgcagcaggcgagaaggagcgcg-ttgca B D Elephant g----------aagt------agcc-caaggac-tttaggtcccagcaggcgagaaggaggcgg-ttgca B D Tenrec ggcgctggtcagaga------agtc-caaggtc-ttca-gtccaagtaggcgagaaggagccgg-tggca B D Zebrafish ====================================================================== B D X. tropicalis ====================================================================== B D Opossum ====================================================================== B D Chicken ====================================================================== Mouse ag-cctcagaa----------------------------------ccgatt-----tcccc Rat ag-tgtcagga----------------------------------ccgatt-----tcccc GCF_003668045 ca-cgtcagga----------------------------------ccgatt-----tcccc Beaver gg-cgtcaaga----------------------------------ccgatt-----tcccc Squirrel gg-cgtcaaga----------------------------------cggatt-----tcccc Guinea pig gg-cgtctgga----------------------------------cggatt-----tctcc Rabbit gg-agtcgaga----------------------------------ccgatt-----ccccc Pika gg-cgtccagg----------------------------------cctctcgctcgccgcc Human gg-cgtcaaga----------------------------------ccgatt-----tctcc Chimp gg-cgtcaaga----------------------------------ccgatt-----tctcc Bonobo gg-cgtcaaga----------------------------------ccgatt-----tctcc Gorilla gg-cgtcaaga----------------------------------ccgatt-----tctcc Rhesus gg-cgtcaaga----------------------------------ccgatt-----tcccc Marmoset gg-catcaaga----------------------------------ccgatt-----tcccg Tarsier gg-cttctgga----------------------------------ccgatt-----tcccc Bushbaby gg-cgtcaaga----------------------------------cctatt-----tctcc Tree shrew ------------------------------------------------------------- Malayan flying lemur gg-cgtcaaga----------------------------------ccgatt-----tcccc Pig gg-cgtcaaga----------------------------------cctatt-----tcc-c Dolphin gg-cgtcgaga----------------------------------ccgatt-----tcccc Cow gg-cgtcaaga----------------------------------ccgact-----tcctc Sheep -g-cgtcaaga----------------------------------ccgact-----tcctc Horse gg-catcagga----------------------------------ccgatt-----tccca Chinese pangolin gg-cgtcatgc----------------------------------cggatt-----tccta Dog gg-cgtcaaga----------------------------------ctgatt-----tcccc Hawaiian monk seal gg-cgtcaaga----------------------------------ccgatt-----tcccc Hedgehog gg-agccaaaacccgacccccgcccccggcgccatccccccccccccacct-----ctccc Shrew gg-cgtcaaag----------------------------------ccgatt-----tcccc Elephant gg-cgtcaaga----------------------------------ccaatt-----tccct Tenrec ggatatcagga----------------------------------tcgatt-----tccct Zebrafish ============================================================= X. tropicalis ============================================================= Opossum ============================================================= Chicken ============================================================= Alignment block 42 of 317 in window, 56743092 - 56743109, 18 bps B D Mouse gcctgcttcgg-ag-agttt B D Rat gcctgcttcgg-ag-agttt GCF_003668045 gtctgcttcgg-ag-agttt Beaver gcctgcttcgg-ag-tcttt B D Squirrel gcctgcttggg-ag-acttc B D Guinea pig gccagcttctg-ag-aacct B D Rabbit gcctggttcgg-ag-acttt B D Pika ggcggcccccg-ag-acttc B D Human ccctgcttcgggag-acttt B D Chimp ccctgcttcgggag-acttt B D Bonobo ccctgcttcgggag-acttt B D Gorilla ccctgcttcgggag-acttt B D Rhesus tcctgcttcgggag-ac-tt B D Marmoset tcctgcttcggagg-acttt B D Tarsier gcctgc-tcgggaa-ccatt B D Bushbaby gtctgcttcgg-ag-acttt B D Malayan flying lemur gcctgctttgg-ag-acttg B D Pig gcctgcttcgg-ag-acttt B D Dolphin gcctgcttcgg-ag-acttc B D Cow gcctgcttcgg-ag-gcttc B D Sheep gcctgcttcgg-ag-gcttc B D Horse gcctgcttcgg-ag-acttt B D Chinese pangolin gcctgtttcgg-ag-acatt B D Dog gcctgcttcgg-ag-gcttt B D Hawaiian monk seal gcctgcttcgg-ag-gcttt B D Hedgehog tcctgctcctg-ag-ac--t B D Shrew gccagtcttgg-ag-acttt B D Elephant gcctgcttcag-ag-acttt B D Tenrec gcttgcttcag-agtttttt B D Opossum gtccgttctgg-aa-agttt B D Tree shrew -------------------- B D Zebrafish ==================== B D X. tropicalis ==================== B D Chicken ==================== Inserts between block 42 and 43 in window B D Rabbit 320bp B D Pika 1bp Alignment block 43 of 317 in window, 56743110 - 56743234, 125 bps B D Mouse --taagtgtccggagttgccc----tgggtct-------------------------------------- B D Rat --agagtgtcccgagttgccc----tgggtctgtctctctctctctctctctctctctctctctctctct GCF_003668045 --tgggtgccgggagctgccc----tgggtct-------------------------------------- Beaver --tgaactttcggagcggccc----agcgccg-------------------------------------- B D Squirrel --agca---ctcgagcggccc----tgagtct-------------------------------------- B D Guinea pig --caaaagtccgagcgggggc----tgcgtct-------------------------------------- B D Pika --cgggcgctcggaacagcctggagtgcgtct-------------------------------------- B D Human --tgaacgctcggagaggccc----ggcatct-------------------------------------- B D Chimp --tgaacgctgggagaggccc----ggcatct-------------------------------------- B D Bonobo --tgaacgctcggagaggccc----ggcatct-------------------------------------- B D Gorilla --tgaacgctcggagaggccc----ggcatct-------------------------------------- B D Rhesus --tgaacgctcggagaggccc----tgcgtct-------------------------------------- B D Marmoset --tgaacgcttggagaggccc----tgagtct-------------------------------------- B D Tarsier --tggaccctcgggacggctc----cgcgtct-------------------------------------- B D Bushbaby --tgaacactcagagctgccc----tgcttag-------------------------------------- B D Tree shrew ----------------------------gtct-------------------------------------- B D Malayan flying lemur --tgagcgctgggagcggccc----tgcgtct-------------------------------------- B D Pig --tgaacactcggagaggctc----t-tgtct-------------------------------------- B D Dolphin --tgagcactcggagaggccc----tgcgtct-------------------------------------- B D Cow --tgaacactcggagaggccc----tgcgtct-------------------------------------- B D Sheep --tgaacactcggagaggccc----tgcgtct-------------------------------------- B D Horse --tgaacgctcggagcggccc----tgcgt---------------------------------------- B D Chinese pangolin --tgaactctcggagcagccc----ttccttt-------------------------------------- B D Dog --tgagcacttggagcggcct----tgcttct-------------------------------------- B D Hawaiian monk seal --tgaacacttggagcggccc----cgcgtct-------------------------------------- B D Hedgehog --tgaattctgggagctgctc----agcgcct-------------------------------------- B D Shrew --tgaactcccgaagctgcac----cgcgtct-------------------------------------- B D Elephant --tgaacactcggagcgtccc----tgcgtct-------------------------------------- B D Tenrec --tggacactc-gagtgtccc----agcg----------------------------------------- B D Opossum ggagaaagcct---atggccc----tacaact-------------------------------------- B D Zebrafish ====================================================================== B D X. tropicalis ====================================================================== B D Chicken ====================================================================== B D Rabbit ====================================================================== Mouse -------------------------------ctcttcttgtttgttgttggg-aatcgcaaagtaggagc Rat ctctctctctctctctctct---------ctctctccttgtttgtagttggg-aatcgcaaagcaggagc GCF_003668045 -------------------------------ttctacttgtttgtagctgga-acgcgcaaagcaggaac Beaver -------------------------------caccacttgttagtagccgtc-gcccgccgggcaagaat Squirrel -----------------cgc---------cacattacttgcctgtagcagcc-gccctc--accagggat Guinea pig -------------------------------cagcattt-----tatttgct-gcccccaccgcaggaat Pika -----------------cgc---------ctctcggctggtccgcggcggct-gccctcgcatcaggaag Human -----------------cac---------cactttacttggccgtaggggcc-tccggcacggcaggaat Chimp -----------------cac---------cactttacttggccgtaggggcc-tccggcacggcaggaat Bonobo -----------------cac---------cactttacttggccgtaggggcc-tccggcacggcaggaat Gorilla -----------------cac---------cactttacttggccgtaggggcc-tccggcacggcaggaat Rhesus -----------------cac---------cactttacttggttgtaggggcc-tccggcacggcaggaat Marmoset -----------------cac---------cactttacttggctgtaggggcc-tctggcaccgcaggaat Tarsier -----------------ccc---------cact----ttgaccgtggcggcc-tctcgcccggcaggaac Bushbaby -----------------cac---------caccacacttgactggagcggcc-tccagcac-gcaggaat Tree shrew -----------------gac---------cc--------------------------------------- Malayan flying lemur -----------------cac---------cactttacatgtctgtagcagccgcccttcacgacaggaat Pig -----------------cac---------cattttattcgtttatagccgcc-gcaggcaccaccagaat Dolphin -----------------cac---------cactacatttgtctgtagcggcc-tcaggcactgccagaat Cow -----------------cac---------cactttatttgcttgtatcggcc-gcaggcactgcggtaat Sheep -----------------cac---------cactttatttgcttgtatcggcc-gcaggcactgccgtaat Horse -------------------c---------tattttat-------tagcggcc-ataggcatcaccagaat Chinese pangolin -----------------tac---------cattttatttgtttgtagcggcc-tcaggcagcaccataat Dog -----------------cac---------cactttatttgcttgtagtggcc-gcaggcaccaccggaac Hawaiian monk seal -----------------cac---------cactttatttgcttgtagtggcc-gcagacaccactggaat Hedgehog -----------------cgc---------cactcaatttgtttgtggcggtc-tcaggcaccgcggaaat Shrew -----------------cac---------cacttgatttgcctgtagcggct-gcagtcacccccagaat Elephant -----------------cac---------ccttttatttgcctatcacggcc-tccggctcccctggaat Tenrec -------------------------------------------atcgc-gcc-atcagcgcctcaggacc Opossum -----------------tgctcttagttgtaatttgtttgcctat-gaagca-acagacg-aactggatt Zebrafish ====================================================================== X. tropicalis ====================================================================== Chicken ====================================================================== Rabbit ====================================================================== Mouse g-a-------------------------------------ggtctgg--ccgca-----gcttgttttga Rat g-a-------------------------------------ggtctgg--tctca-----gcttgtttt-- GCF_003668045 g-a-------------------------------------ggtctgg--ccaca-----gcttgttccgg Beaver g-a--------g-------------ggagg--g-------ggtccga--ccaca-----gcttgtttggg Squirrel g-a--------g-------------aaagg--gat---tccaaccga--cccga-----gattgttttgg Guinea pig g-a--------g-------------gaagg--ggt---ccgtgctga--cctca-----acttccacggg Pika c-agggatgtgg-------------ggagg--ggg---tccgcctggacccggg-----ggtcgtccggg Human g-a--------g-------------ggagg--ggg---tccgattgg--acagt-----gacggtttggg Chimp g-a--------g-------------ggagg--ggg---tccgattgg--accgt-----gacggtttggg Bonobo g-a--------g-------------ggagg--ggg---tccgattgg--accgt-----gacggtttggg Gorilla g-a--------g-------------ggagg--ggg---tccgattgg--accgt-----gacggtttggg Rhesus g-a--------g-------------agagg--ggg---tccgattgg--accgt-----gaccgtttcgg Marmoset g-a--------g-------------ggagg--ggg---tccgattgg--accgt-----gacag-ttggg Tarsier gaa--------g-------------ggagg--ggg---tccgactgc--gcctcagctgggctgtttggg Bushbaby c-a--------g-------------ggagg--gca---tctagccgg--acctt-----ggcgcttt-gg Tree shrew ----------------------------------------------g--acctt-----ggccacttggg Malayan flying lemur g-a--------g-------------ggagg--gcg---tccgaatgg--accgc-----ggcgatttggg Pig g-a--------g-------------ggagg--aggg--tttacctgg--accac-----gggaatttgag Dolphin g-a--------g-------------ggagg--aggg--tctgactcg--accgc-----ggtgatttgca Cow g-a--------g-------------ggagg--aggg--tctgactca--acccc-----ggtgatttgag Sheep g-a--------g-------------ggagg--aggg--tctgactca--accgc-----ggtgatttgag Horse g-c--------g-------------ggagg--tggtggtctgactct--agcgc-----gatggtttggg Chinese pangolin a-a--------g-------------agaag--gggc--tcggattcg--acagc-----ggtagttt-ta Dog g-g--------ggtggggggagggagggag--ggtg--tccgattcg--acctt-----agtggtttggg Hawaiian monk seal g-g--------g-------------gggag--gggg--tccgactcg--acctt-----agtggtttggg Hedgehog g-a--------g-------------agagggcgggt--cttgacccc--ac------------------- Shrew g-a--------a-------------ggagg--ggca--tctgacccg--acctc-----ggtagttt-gg Elephant g-a--------c-------------taggg--g-----cgcgaccag--actgcgcc--gtcgcctttgg Tenrec g-a--------c-------------ggggg--c-----tccgactcc--acc--------ccggctttga Opossum g-c--------a-------------ggagg--aggg--tgggagaat--gaagc-----agtcggatagt Zebrafish ====================================================================== X. tropicalis ====================================================================== Chicken ====================================================================== Rabbit ====================================================================== Mouse gacgtttggctc---------ag-gccggaacagtctggtttcg----g-g------------------ Rat -----tgagctc---------ag-gctggagcagtctggttttg----g-------------------- GCF_003668045 gctgtttggccc---------ag-gccgagactgtctggtttcg----g-g------------------ Beaver gacgttcggcag---------tgttccgggactgtatattttgg----g-g------------------ Squirrel gccgttcggcaa---------tg-ttcggggacctatggtttgg----g-g------------------ Guinea pig gctgttcagcga---------ag-tgcgggaccttagggttagg----g-g------------------ Pika actgtgcgggccgtgtttgtagg-ggcagtggcgtccggtcctgctgcg-c------------------ Human gccgttcggcta---------tgttcagggaccatatggtttgg----g-g------------------ Chimp gccgttcggcta---------tgttcagggaccatatggtttgg----g-a------------------ Bonobo gccgtttggcta---------tgttcagggaccatatggtttgg----g-a------------------ Gorilla gccgttcggcta---------tgttcagggaccatatggtttgg----g-g------------------ Rhesus gccgttcggcta---------tgttccgggaccgtatggtttgg----g-g------------------ Marmoset cccgttcggctt---------tgttcaggaatcgtttggcttgg----g-g------------------ Tarsier gccgctcggcca---------tgttcggggactgaatggtttgg----g-g------------------ Bushbaby gccgttc-gcta---------tgttcgggaaccgtatggtttgg----g-g------------------ Tree shrew gccgttagacaa---------tgttaggggaccggatggtttgg----g-g------------------ Malayan flying lemur gccattcggcaa---------tgtttggggaccgtctggcttgg----g-g------------------ Pig gccgttcctcaa---------ggctcggagatcctatggttcgg----g-g------------------ Dolphin gccgttcctcaa---------ggctcggggaccttacggtttgg----t-g------------------ Cow gccgttcctcaa---------ggctcggggaccgtatggtttgg----t-g------------------ Sheep gccgttcctcaa---------ggctcggggaccgtatggtttgg----t-g------------------ Horse gtcgtttggctg---------ggctcaaggaccgaatgatttgg----g-g------------------ Chinese pangolin gcggttcggcaa---------ggct-agcgatcttatgg-ctgg----g-g------------------ Dog gctgttgggcaa---------ggctcggggacagtagggtttgg----g-a------------------ Hawaiian monk seal gccattgggcaa---------ggctcgggggcagtagggtttgg----g-a------------------ Hedgehog --ggtccagctg---------ggctc-gagaccgtcgcgtctgg----g-g------------------ Shrew gtggttgggcta---------agctcggagaccgtagagttcgg----gag------------------ Elephant gctgttcggcga---------ggttcgtggttcgtatggtttgg----g-g------------------ Tenrec gccgatcggcgt---------ggttcgtggagcatgtgatttgg----g-a------------------ Opossum tcatttcagtga---------ggcttcggaaccatgcgatttga----a-gacccactttggtttaggg Zebrafish ===================================================================== X. tropicalis ===================================================================== Chicken ===================================================================== Rabbit ===================================================================== Inserts between block 43 and 44 in window B D Opossum 86bp Alignment block 44 of 317 in window, 56743235 - 56743277, 43 bps B D Mouse gcaaccccag----tcctt------atagaagg-gtgt-----------------c---ataaccctgcc B D Rat ------------------------------agg-gtgt-----------------c---ataacactgcc GCF_003668045 gcagccacaa----tccta------tcaggagg-gtgt-----------------c---atagctctgtc Beaver acagccccag----tcgttagtc--aggggcgg-gtac-----------------g---ttagccctgcc B D Squirrel acagtacaag----tggttagtc--aggggtgg-gtgc-----------------g---ttagttctgtc B D Guinea pig acagcccccg----tcctaag----tcggggcg-gttc-----------------c---ttagcccggcc B D Pika tcagccccgg----gcccacgtcttggggggag-gtgc-----------------gcgtgtgggccggcc B D Human acagccccag----tagttagta--ggggacgg-gtgc-----------------g---ttcgcccagtc B D Chimp acagccccag----tcgttagta--cgggacgg-gtgc-----------------g---ttcgcccagtc B D Bonobo acagccccag----tcgttagta--cgggacgg-gtgc-----------------g---ttcgcccagtc B D Gorilla acagccccag----tcgttagta--cgggacgg-gtgc-----------------g---ttcgcccagcc B D Rhesus acagtcccag----tcgttagta--cgggacgg-gcgc-----------------g---ttcgcccagtc B D Marmoset acagcccctg----tcgttagta--caggacgg-gtgc-----------------g---ttcgcccagtc B D Tarsier a-----cccg----cggttagcc--ccgggaga-gcgc-----------------t---ttcgccctgcc B D Bushbaby acagccccag----tcgtcattc--tggggcgg-gtgc-----------------g---tcctccctgct B D Tree shrew acagctccag----acgttagcc--tggggcgg-gtgc-----------------g---ttcgctctgcc B D Malayan flying lemur acagcccccg----tcgttagtc--cggggcaa-gtgt-----------------g---tccgcccggtt B D Pig aaagcccggg----tccttagtc--ctaggc-g-gtgt-----------------a---tccgccttgcc B D Dolphin aaagcccgggtccttccttagtc--cgaggcgg-gtgt-----------------a---tccgccttgta B D Cow aaagcccggg----tccttagtc--ccaggcgg-gtgc-----------------c---tccgccttgcc B D Sheep aaagcccggg----tccttagtc--ccaggcgg-gtgc-----------------c---tccgtcttgcc B D Horse aaagccgggg----tccttagtc--cggggcgg-gtgc-----------------a---accgccctgcc B D Chinese pangolin aaagct-ggg----tccttagtc--ctgggtggtttgt-----------------a---gccaacct-tc B D Dog aaagcccagg----ttccccgcc--gggggtgg-gtgc-----------------a---tctacccagcc B D Hawaiian monk seal aaagcccagg----tcccgagtc--ccgggtgg-gtgc-----------------a---tctgccctgcc B D Hedgehog acagcccgcg----tctgtagtc--tgggacgc-gtgtcagtctgtctgtcggcgt---gtcggcctgtc B D Shrew aaagcccggg----tcttgactc--cggatcct-gtgc-----------------t---cccgccctacc B D Elephant acagcccctg----tccttgatc--cggggcga-gtga-----------------g---ttcgccctgcc B D Tenrec acagtccctg----tccctgtcc--cacggcta-gtgg-----------------g---ttcg-cctgcc B D Zebrafish ====================================================================== B D X. tropicalis ====================================================================== B D Opossum ====================================================================== B D Chicken ====================================================================== B D Rabbit ====================================================================== Mouse cctg Rat cctg GCF_003668045 atcg Beaver cccg Squirrel cccg Guinea pig cctg Pika accc Human cccg Chimp cccg Bonobo cccg Gorilla cccg Rhesus cccg Marmoset cccg Tarsier cgcg Bushbaby cccg Tree shrew ccgg Malayan flying lemur cgcg Pig ccca Dolphin cctg Cow ccct Sheep ccct Horse ccct Chinese pangolin ccct Dog ccct Hawaiian monk seal ttct Hedgehog ctcc Shrew tccc Elephant ccca Tenrec ccca Zebrafish ==== X. tropicalis ==== Opossum ==== Chicken ==== Rabbit ==== Inserts between block 44 and 45 in window B D Hedgehog 6bp B D Shrew 6bp Alignment block 45 of 317 in window, 56743278 - 56743286, 9 bps B D Mouse gac----------gctctt----------- B D Rat gaa----------gctctt----------- GCF_003668045 gac----------actcgt----------- Beaver gac----------gctttc----------- B D Squirrel gac----------actcac----------- B D Guinea pig gac----------gcggac----------- B D Pika cgc----------gccctcgctgtgcaccg B D Human gat----------gcgtag----------- B D Chimp gat----------gcgtag----------- B D Bonobo gat----------gcgtag----------- B D Gorilla gat----------gcgtag----------- B D Rhesus gac----------gcgcag----------- B D Marmoset gac----------gcgcag----------- B D Tarsier ggc----------gcgcac----------- B D Bushbaby gac----------gcgcac----------- B D Tree shrew gac----------gcgcac----------- B D Malayan flying lemur gac----------gcgcac----------- B D Pig gac----------gcgcgc-----------