Multiz Alignments of 60 Vertebrates

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Capitalize exons based on show bases

Place cursor over species for alignment detail. Click on 'B' to link to browser for aligned species, click on 'D' to get DNA for aligned species.
Alignment block 1 of 732 in window, 56698642 - 56698655, 14 bps B D Mouse actgca-a-agaccag B D Rat acggca-g-caaatag B D Kangaroo rat aaggca-a-agagagt B D Naked mole-rat aaggca-a-agaaagt B D Guinea pig aaggcaga-aaagagt B D Squirrel aaggca-a-agaac-t B D Rabbit aaggca-a-ggagaga B D Pika agggca-atggggaga B D Human aaggca-a-agacaga B D Chimp aaggca-a-agacaga B D Gorilla aaggca-a-----aga B D Orangutan aaggca-a-agacaga B D Gibbon aaggca-a-agataga B D Rhesus aaggca-a-agacaga B D Baboon aaggca-a-agacaga B D Marmoset aaggca-a-aaacaga B D Squirrel monkey aaggca-a-agacaga B D Tarsier aaggca-a-agagaga B D Mouse lemur aaggca-a-agagaga B D Bushbaby aaggca-a-agagaga B D Tree shrew aaggca-g-ag--aga B D Pig aaggca-a-ggagaga B D Dolphin aaggca-a-gaagaga B D Sheep aaggca-a-ggaaaga B D Cow aaggca-a-ggaaaga B D Cat aaggca-a-agagaga B D Dog aaggca-a-agagaga B D Panda aaggca-a-agagaga B D Horse aaggca-a-agagaga D Little brown bat aaggca-a-agagaga B D Megabat aaggcc-a-agagaga B D Hedgehog aaggca-a-agagaaa B D Shrew aaggca-a-aaagaga B D Elephant aaggta-a---agaga B D Rock hyrax agggt------agaga B D Tenrec aaagca-a-ctagaga B D Manatee aaggta-a-agagaga B D Armadillo aaggca-a-agagaga B D Sloth aaggca-a-agagaga B D Opossum aagacg-a-agagata B D Tasmanian devil aagacg-a-agagata B D Wallaby aagacg-a-agagata B D Platypus aaagcg-a-ggcgaga B D Chicken gagccg---------- B D Budgerigar gaaccg---------- B D Painted turtle gag------------- B D Alpaca NNNNNNNNNNNNNNNN B D Stickleback ================ B D Tetraodon ================ B D Fugu ================ B D Medaka ================ B D Atlantic cod ================ B D Nile tilapia ================ B D X. tropicalis ================ B D Turkey ================ B D Coelacanth ================ B D Lizard ================ B D Zebra finch ================ Inserts between block 1 and 2 in window B D Budgerigar 764bp Alignment block 2 of 732 in window, 56698656 - 56698662, 7 bps B D Mouse ca------ggcag B D Rat cgtcagacagtag B D Kangaroo rat ca----------- B D Naked mole-rat ga------ggcag B D Guinea pig ca------ggcag B D Squirrel ca------ggcag B D Rabbit ca------ggcag B D Pika tg------agggg B D Human ca------ggcag B D Chimp ca------ggcag B D Gorilla ca------ggcag B D Orangutan ca------ggcag B D Gibbon ca------ggcag B D Rhesus ca------ggcag B D Baboon ca------ggcag B D Marmoset ca------ggcag B D Squirrel monkey ca------ggcag B D Tarsier ca------ggcag B D Mouse lemur ca------ggcag B D Bushbaby ca------ggcag B D Tree shrew ca------ggcag B D Pig tt------ggcaa B D Dolphin ct------ggcag B D Sheep ct------ggcag B D Cow ct------ggcag B D Cat ct------ggcag B D Dog tt------ggcag B D Panda ct------ggcag B D Horse ct------ggcag D Little brown bat ct------ggccg B D Megabat ct------ggcag B D Hedgehog ct------ggaag B D Shrew ca------ggcag B D Elephant ta------ggcag B D Rock hyrax ca------ggcag B D Tenrec ca------ggcac B D Manatee ca------ggcag B D Armadillo ca------gacag B D Sloth ca------gacag B D Opossum ta------gaaag B D Tasmanian devil ta------gacag B D Wallaby ta------gacag B D Platypus ca------ggcag B D Chicken ct------cgcag B D Painted turtle -a------ggtag B D Alpaca NNNNNNNNNNNNN B D Stickleback ============= B D Tetraodon ============= B D Fugu ============= B D Medaka ============= B D Atlantic cod ============= B D Nile tilapia ============= B D X. tropicalis ============= B D Turkey ============= B D Coelacanth ============= B D Lizard ============= B D Budgerigar ============= B D Zebra finch ============= Inserts between block 2 and 3 in window B D Chicken 534bp Alignment block 3 of 732 in window, 56698663 - 56698664, 2 bps B D Mouse tt B D Rat tt B D Naked mole-rat tt B D Guinea pig tt B D Squirrel tt B D Rabbit tt B D Pika tt B D Human tt B D Chimp tt B D Gorilla tt B D Orangutan tt B D Gibbon tt B D Rhesus tt B D Baboon tt B D Marmoset tt B D Squirrel monkey tt B D Tarsier ct B D Mouse lemur tt B D Bushbaby ta B D Tree shrew tt B D Pig tt B D Dolphin tt B D Sheep tt B D Cow tt B D Cat tt B D Dog tt B D Panda tt B D Horse tt D Little brown bat tt B D Megabat tt B D Hedgehog tt B D Shrew tt B D Elephant tt B D Rock hyrax ct B D Tenrec tt B D Manatee tt B D Armadillo tt B D Sloth tt B D Opossum cc B D Tasmanian devil ct B D Wallaby ct B D Platypus ct B D Painted turtle ct B D Alpaca NN B D Stickleback == B D Tetraodon == B D Fugu == B D Medaka == B D Atlantic cod == B D Nile tilapia == B D X. tropicalis == B D Turkey == B D Coelacanth == B D Lizard == B D Budgerigar == B D Zebra finch == B D Chicken == B D Kangaroo rat -- Inserts between block 3 and 4 in window B D Platypus 1713bp Alignment block 4 of 732 in window, 56698665 - 56698675, 11 bps B D Mouse -gg-gaatc---------agt-g B D Rat -gt-gaatc---------agt-c B D Kangaroo rat ----gaccc---------aaa-c B D Naked mole-rat -ct-ggacc---------aaa-- B D Guinea pig -tt-gtacc---------aaa-- B D Squirrel -ct-ggacc---------caa-- B D Rabbit -ct-ggacc---------taaac B D Pika -tt-ggacc---------caaac B D Human -ct-ggacc---------aaaac B D Chimp -ct-ggacc---------aaaac B D Gorilla -ct-ggacc---------aaaac B D Orangutan -ct-ggacc---------aaaac B D Gibbon -ct-ggacc---------aaaac B D Rhesus -ct-ggacc---------aaaac B D Baboon -ct-ggacc---------aaa-- B D Marmoset -tt-gaacc---------aaaac B D Squirrel monkey -ct-ggacc---------aaaac B D Tarsier -ct-ggacc---------caaac B D Mouse lemur -ct-ggacc---------aaaac B D Bushbaby -at-ggacc---------aaaac B D Tree shrew -tt-agacc---------aaa-- B D Pig -ct-gggcc---------aagg- B D Dolphin -ct-gggcc---------aaaa- B D Sheep -ct-gggcc---------aaaa- B D Cow -ct-gggcc---------aaaa- B D Cat -ct-gcgcc---------aaaa- B D Dog -ct-ttgcc---------aaaa- B D Panda -ct-tcgtc---------aaaa- B D Horse -ca-gcacc---------aaaa- D Little brown bat -ct-gggcc---------aaaa- B D Megabat -ct-gggcca--------aaaa- B D Hedgehog -gg-ggggggggggaggcaaag- B D Shrew -ct-gggca---------aaaa- B D Elephant -ct-gggac---------aaaac B D Rock hyrax -ct-gggcca--------aaaac B D Tenrec -ct-gggcc---------caaac B D Manatee -ct-gggcc---------taaac B D Armadillo -ct-gggcc---------aaaac B D Sloth -ctggggcc---------aaaac B D Opossum -ct-gagct---------ggaa- B D Tasmanian devil -ct-gtgct---------ggaa- B D Wallaby -ct-gagct---------ggaa- B D Painted turtle tct-gaaca---------gaa-- B D Alpaca NNNNNNNNNNNNNNNNNNNNNNN B D Stickleback ======================= B D Tetraodon ======================= B D Fugu ======================= B D Medaka ======================= B D Atlantic cod ======================= B D Nile tilapia ======================= B D X. tropicalis ======================= B D Platypus ======================= B D Turkey ======================= B D Coelacanth ======================= B D Lizard ======================= B D Budgerigar ======================= B D Zebra finch ======================= B D Chicken ======================= Inserts between block 4 and 5 in window B D Pig 1bp B D Dolphin 1bp B D Sheep 1bp B D Cow 1bp B D Cat 1bp B D Dog 1bp B D Panda 1bp B D Horse 1bp D Little brown bat 1bp B D Megabat 1bp B D Hedgehog 1bp B D Shrew 1bp B D Opossum 5bp B D Tasmanian devil 1bp B D Wallaby 1bp Alignment block 5 of 732 in window, 56698676 - 56698770, 95 bps B D Mouse atggc-tttctggtac--aaaaatagg-agcac--aatc-t------------acttc-tttg-g-a--- B D Rat atggc-ttcctggtac--aaaaatggg-aacac--aatc-t------------ttgtc-tttg-g-a--- B D Kangaroo rat gtggt-ttcctggtgcaaaaaaatcgg-agcac--aatc-t------------atttc-tttg-g-a--- B D Naked mole-rat acagt-ttcctggtgt--aaacatagg-agcac--agt-----------------tga-tttg-g-g--- B D Guinea pig acagt-ttcctggtgc-aaaaaatagg-aacac--aat-----------------ttc-ttgg-g-a--- B D Squirrel acagt-ctcttggtgc-aaaaaatagg-agcac--aatc-t------------atttc-tttg-gaa--- B D Rabbit acccc-atcctggtgc--aaaaatggg-aacac--agtc-t------------aatc--tttg-a-g--- B D Pika accct-ttcctggtac--aaaactggg-agcccggagtt-t------------agtttgttta-g-t--- B D Human acagt-ttcctggtgc----aaatggg-a-ctc--aatc-t------------aattc-ttgg-g-g--g B D Chimp acagt-ttcctggtgc----aaatggg-a-ctc--aatc-t------------aattc-ttgg-g-g--g B D Gorilla acagt-ttcctggtgc----aaatggg-a-ctc--aatc-t------------aattc-ttgg-g-g--g B D Orangutan acagt-ttcctggtgc----aaatggg-a-ctc--aatc-t------------aattc-ttgg-g-g--g B D Gibbon acagt-ttcctggtgc----aaatggg-a-ctc--aatc-t------------agttc-ttgg-g-g--g B D Rhesus acagt-ttcctggtgc----aaatggg-a-ctc--aatc-c------------aattc-ttgg-g-g--g B D Baboon acagt-ttcctggtgc----aaatggg-a-ctc--aatc-t------------aattc-ttgg-g-g--g B D Marmoset acagt-ttcctggtgc----aaatggg-a-ctc--aatc-t------------aattc-ttga-g-g--g B D Squirrel monkey acagt-tttctggtgc----aaatggg-a-ctc--agtc-t------------aattc-ttgg-g-g--g B D Tarsier acaga-ttcctggtgc----aaatagg-a-atc--catt-t------------aattc-ttgg-a-g--g B D Mouse lemur atggt-ttcctggtgc----aaatggg-a-atc--aatc-t------------aattc-tagg-g-ggtg B D Bushbaby acagt-ttcttggtgc----aaatggg-a-atc--aatc-t------------agttc-tttg-g-g--g B D Tree shrew acagt-ttcctggtgc----aaatgggaa-cgc--aatc-t------------aattc-tttg-g-a--g B D Pig acagt-ttcctggtgc----aaactgg-aacac--aatc-t------------aattc-tttg-g-a--- B D Alpaca acggt-ttcctggtgc----aaattgt-aacac--aacc-t------------aattc-tctg-g-a--- B D Dolphin acagt-ttcctggtgc----aaattgg-aacac--aatc-t------------aattc-tttg-g-a--- B D Sheep actat-ttcctggtgc----aaattgg-aacac--aatctt------------aattc-tttg-g-c--- B D Cow cctgt-ttcctggtgc----aaattgg-aacac--aatctt------------aattc-ttcg-g-c--- B D Cat atggt-ttcctggtgc----aaattgg-aacat--aatc-t------------aatcc-tttg-g-a--- B D Dog acggt-ttcctggtgc----aaattgg-aacac--aatc-t------------gattc-tttg-g-a--- B D Panda acagt-ttcctggtgc----aaactgg-aacac--aatc-t------------aattc-tttg-g-a--- B D Horse actgt-ttcctggtgc----aaattag-aacac--aatc-t------------aattc-tttg-g-a--- D Little brown bat gcagtggtcctggtgc----aaattgg-aacac--aatc-t------------aattc-tttg-g-a--- B D Megabat acaat-ttcctgatgc----aaactgg-aacac--aata-t------------aattc-tttg-g-a--- B D Hedgehog acagc-ttcctggtgc----aaattgg-aaccc--aatc-t------------aatta-tttg-g-a--- B D Shrew acaat-ttcctggtac----aaaacgg-aatac--aacc-t------------aattc-tttg-g-a--- B D Elephant atggt-ttcctggtgc----aaatagg-aacac--aatc-t------------aat----------g--- B D Rock hyrax atagt-ttcctggtgc----aaacaga-aacac--agtc-t------------aattc-tttg-g-a--- B D Tenrec atgct-ttcttggtgc----aaataag-aacac--attc-a------------attct-ttag-g-g--- B D Manatee aaggt-ttcctggtgc----aaatagg-aacac--aatc-t------------aattc-ttcg-g-a--- B D Armadillo acggt-ttcctggtgc----aaatagg-aatac--aatc-t------------aatta-tttg-g-a--- B D Sloth atggg-ttcctggtgc----gaatagg-aatac--aatc-t------------aatta-tttgcg-a--- B D Opossum agagc-ctc--aatcc----aaatgag-aacac--gacc-t------------aatta-aatt-g-t--- B D Tasmanian devil gtaga-ctc--aatcc----aaatggg-aactc--gact-t------------aatta-attt-a-t--- B D Wallaby atagc-ctc--agtcc----aaatggg-aacac--gact-t------------aattc-attt-a-t--- B D Painted turtle acagt-tta-----------acacgag-agctc--gatc-ttgctcccactcaagtca-atcg-g-a--- B D Stickleback ====================================================================== B D Tetraodon ====================================================================== B D Fugu ====================================================================== B D Medaka ====================================================================== B D Atlantic cod ====================================================================== B D Nile tilapia ====================================================================== B D X. tropicalis ====================================================================== B D Platypus ====================================================================== B D Turkey ====================================================================== B D Coelacanth ====================================================================== B D Lizard ====================================================================== B D Budgerigar ====================================================================== B D Zebra finch ====================================================================== B D Chicken ====================================================================== Mouse -------gggggagac----------agtg---------------------------------------- Rat -------gggggagaca--------aaatg---------------------------------------- Kangaroo rat -------gcaggaggcg--------tcgtg---------------------------------------- Naked mole-rat -------ggagggagta--------tgctt---------------------------------------- Guinea pig -------gggggggtaa--------tggtg---------------------------------------- Squirrel -------gggggagaca--------tagtg---------------------------------------- Rabbit -------gggggaggca--------tggtg---------------------------------------- Pika -------gtgggaggca--------cggtg---------------------------------------- Human tggtagaggaggagaca--------tagtg---------------------------------------- Chimp tggtagaggaggagaca--------tagtga--------------------------------------- Gorilla tggtagaggaggagaca--------cagtg---------------------------------------- Orangutan tggtagaggaggagaca--------tagtg---------------------------------------- Gibbon tggtagaggaggagaca--------tagtg---------------------------------------- Rhesus tggtagaggaggaaaca--------tagtg---------------------------------------- Baboon tggtagaggaggaaaca--------tagtg---------------------------------------- Marmoset tggtagaggaggagaca--------tagtg---------------------------------------- Squirrel monkey tggtagaggaggagaca--------tagtg---------------------------------------- Tarsier -------ggggggagca--------tagtg---------------------------------------- Mouse lemur tg-----ggggaagata--------tagtg---------------------------------------- Bushbaby tt-----gggaaaaata--------tagtg---------------------------------------- Tree shrew -------gagggaggca--------tagtgaaaagacaaaagaaaagaaaagaagagaaaaggaaagaaa Pig -----gagggggaggca--------gagtg---------------------------------------- Alpaca -----gaaggagaggca--------tagtg---------------------------------------- Dolphin -----gagggggaggca--------tagtg---------------------------------------- Sheep -----gagggggaggca--------tagtg---------------------------------------- Cow -----gagggggaggca--------tagtg---------------------------------------- Cat -----aaggaggaggaa----tagttaaaa---------------------------------------- Dog -----gagggggaggaa----ggggcgggg---------------------------------------- Panda -----gagggggaggaa------tatagaa---------------------------------------- Horse -----gagg-ggaggaa--------taatg---------------------------------------- Little brown bat -----gagggggaggga--------cagtg---------------------------------------- Megabat -----gagggggaagaa--------tagtg---------------------------------------- Hedgehog -----gaaggggaccct--------taatg---------------------------------------- Shrew -----gagggggaagca--------tagtg---------------------------------------- Elephant ----ggtgggggcggtc------atagtgg---------------------------------------- Rock hyrax ----ggtgggggcgggc---------ggta---------------------------------------- Tenrec ----ggagagggcaaag--------tgggg---------------------------------------- Manatee ----ggtgggggaggggggaagcatagtga---------------------------------------- Armadillo ----gaggggaggtata------gtggggg---------------------------------------- Sloth ----agcggaaaggata------gc----a---------------------------------------- Opossum -------gggggaaact--------cattc---------------------------------------- Tasmanian devil -------gaggaaaact--------cattc---------------------------------------- Wallaby -------ggggaaaact--------cattc---------------------------------------- Painted turtle -------ggggttgatt-ttgatttcagcg---------------------------------------- Stickleback ====================================================================== Tetraodon ====================================================================== Fugu ====================================================================== Medaka ====================================================================== Atlantic cod ====================================================================== Nile tilapia ====================================================================== X. tropicalis ====================================================================== Platypus ====================================================================== Turkey ====================================================================== Coelacanth ====================================================================== Lizard ====================================================================== Budgerigar ====================================================================== Zebra finch ====================================================================== Chicken ====================================================================== Mouse ------------------------ag--aat-a-------agctgacag--ttgaaaag-aaaac-tttc Rat ------------------------aa--aat-a-------ggctgacag--tagaaaaa-aaaac-tttt Kangaroo rat ------------------------aa--aataa-------ggttgacag---agttgaa-aaacc-tttt Naked mole-rat ------------------------aa--aaa-a-------ggctgacag---ggatgaa-aagtt-tt-- Guinea pig ------------------------ac--aaa-a-------ggctgacag---agatgaa-aagtt-tt-- Squirrel ------------------------aa--aaa-a-------ggctgatggagttgaaaag-aaaac-tttt Rabbit ------------------------aa--aac-a-------gactgacagagttgcaaag-aaaaa-tttt Pika -----------------------------------------------------gggggg-aaaaa-gtct Human ---------aaaaaaaaaaaaaaaaa--aaa-a-------ggctgacagagtttaaaag-aaaac-tttt Chimp ----aaaaaaaaaaaaaaaaaaaaaa--aaa-a-------ggctgacagagtttaaaag-aaaac-tttt Gorilla -----aaaaaaaaaaaaaaaaaaaaa--aaa-a-------ggctgacagagtttaaaag-aaaac-tttt Orangutan -------gaaaaaaaaaaaaaaaaaa--aaa-a-------ggctgacagagtttaaaag-aaaac-tttt Gibbon ----------------gaaaaaaaaa--aaa-a-------ggctgacagagtttaaaag-aaaac-tttt Rhesus ------------gaaaaaaaaaaaaa--aaa-a-------gactgacagagttgaaaat-aaaac-tttt Baboon ------------g--aaaaaaaaaaa--aaa-a-------gactgacagcgttgaaaat-aaaac-tttt Marmoset --------------------gaaaaa--aaa-a-------ggctgac--agttgaaaag-aaaac-tttt Squirrel monkey -----------------------aaa--aaa-a-------ggctgacagagttgaaaag-aaaac-tttt Tarsier ------------------------ac--aaa-a-------ggctgacagaattgaaaag-aaaac-tttt Mouse lemur ------------------------aa--aaa-a-------ggctgacagaattgaaa----aaac-ttct Bushbaby ------------------------gacgaaa-a-------agctgacagaattgaaaag-caaac-tttt Tree shrew aaagaaaagaaagaagagaagaaaag--gaa-a-------ggttgacagagttgaaaag-aaaac-tttt Pig ------------------------aa--aaa-a-------gactgacagacttgaaaag-aaaac-tttt Alpaca ------------------------aa--aag-a-------aactgacagggttaaaaag-aaaac-tttt Dolphin ------------------------aa--aaa-a-------gactgacagagttgaaaag-aaaac-tttt Sheep ------------------------aa--aaa-a-------gactgacagagttgaaaag-aaaac-cttt Cow ------------------------aa--aaa-a-------gactgacagagttgaaaag-aaaac-cttt Cat ------------------------aa--aaa-aaaaaaaagactgacagatttgaaaag-acaac-tgtt Dog ------------------------gg--aga-g------------------ttgaaaag-acaac-cgtg Panda ------------------------aa--aag-a------------------ctgacag----agt-tgat Horse ------------------------aa--aaa-a-------gactgacagagttgaaaag-aaaac-tttc Little brown bat ------------------------ag--aga-a-------gactgacagagttg-aaag-aaaac-tttt Megabat ------------------------aa--aga-a-------gactgacagggttgaaaag-aaaac-tttt Hedgehog -----------------ggaaaaaaa--aaa-a-------gactgacagagttgaaaag-aaaac-tttt Shrew ------------------------aa--aaa-a-------gactgacagaattgaaaag-aaaac-tttt Elephant ------------------------aa--aaa-a-------gtctgacagagttgaaaag-aaaacttttt Rock hyrax ------------------------aa--aaa-a-------ggctgacagagttgaaaag-aaaac-tttt Tenrec ------------------------aa--aaa-a-------gcctgatggagttgaaaag-agaac-ttgt Manatee ------------------------aa--aac-a-------ggctaacagagttgaaaag-aaaac-tttt Armadillo ------------------------ga--aaa-a-------ggctggcagagttgtaaag-aaaac-tttt Sloth ------------------------aa--aaa-a-------ggctggcagaattgaaaagaaaaac-cttt Opossum ------------------------aa--gg--g-------ggtagacaaaatttaaaag-aaa----gtt Tasmanian devil ------------------------aa--cag-g-------ggtagacaaaattgaaaaa-aaaaa-tgtt Wallaby ------------------------aa--ca-----------gtagacaaagttgaaaag-aaaac-tgtt Painted turtle ------------------------gg--aac-a-------ggctcgggatcccagcaag-cacac-ttcc Stickleback ====================================================================== Tetraodon ====================================================================== Fugu ====================================================================== Medaka ====================================================================== Atlantic cod ====================================================================== Nile tilapia ====================================================================== X. tropicalis ====================================================================== Platypus ====================================================================== Turkey ====================================================================== Coelacanth ====================================================================== Lizard ====================================================================== Budgerigar ====================================================================== Zebra finch ====================================================================== Chicken ====================================================================== Mouse cacct Rat cacct Kangaroo rat cttcc Naked mole-rat ---cc Guinea pig ---ct Squirrel cttct Rabbit cttct Pika cctct Human cctgc Chimp cctgc Gorilla cctgc Orangutan cctgc Gibbon cctgc Rhesus cttgc Baboon cttgc Marmoset cct-c Squirrel monkey cctgc Tarsier cttgc Mouse lemur cttgc Bushbaby cttgc Tree shrew cttcc Pig cctcc Alpaca cttcc Dolphin cttcc Sheep cttcc Cow cttcc Cat cttcc Dog cttcc Panda tttcc Horse cttcc Little brown bat cttcc Megabat cttcc Hedgehog ctcaa Shrew ttccc Elephant ttccc Rock hyrax tcccc Tenrec cttcc Manatee ttccc Armadillo cttcc Sloth cttcc Opossum cttcc Tasmanian devil ctcct Wallaby ctccc Painted turtle cagct Stickleback ===== Tetraodon ===== Fugu ===== Medaka ===== Atlantic cod ===== Nile tilapia ===== X. tropicalis ===== Platypus ===== Turkey ===== Coelacanth ===== Lizard ===== Budgerigar ===== Zebra finch ===== Chicken ===== Inserts between block 5 and 6 in window B D Elephant 1bp B D Rock hyrax 1bp B D Tenrec 1bp B D Manatee 1bp B D Sloth 225bp B D Tasmanian devil 1bp Alignment block 6 of 732 in window, 56698771 - 56698775, 5 bps B D Mouse ctggg B D Rat ctgca B D Kangaroo rat ccagg B D Naked mole-rat ttaag B D Guinea pig ctagg B D Squirrel ctagg B D Rabbit tgaga B D Pika ctgga B D Human ctagg B D Chimp ctagg B D Gorilla ctagg B D Orangutan ctagg B D Gibbon ctagg B D Rhesus ctagg B D Baboon ctagg B D Marmoset ctagg B D Squirrel monkey ctggg B D Tarsier ctagg B D Mouse lemur ctagg B D Bushbaby ctcag B D Tree shrew ccagg B D Pig ctagg B D Alpaca ctagg B D Dolphin ctagg B D Sheep ctagg B D Cow ctagg B D Cat ccagg B D Dog ctagg B D Panda ctggg B D Horse ctagg D Little brown bat ctagg B D Megabat ctagg B D Hedgehog ctagg B D Shrew ctagg B D Elephant caggg B D Rock hyrax caggg B D Tenrec taggg B D Manatee taggg B D Armadillo ctagg B D Sloth ctgaa B D Opossum acaga B D Tasmanian devil acagg B D Wallaby acaag B D Painted turtle cgggg B D Stickleback ===== B D Tetraodon ===== B D Fugu ===== B D Medaka ===== B D Atlantic cod ===== B D Nile tilapia ===== B D X. tropicalis ===== B D Platypus ===== B D Turkey ===== B D Coelacanth ===== B D Lizard ===== B D Budgerigar ===== B D Zebra finch ===== B D Chicken ===== Inserts between block 6 and 7 in window B D Painted turtle 1424bp Alignment block 7 of 732 in window, 56698776 - 56698801, 26 bps B D Mouse gaatcctgcaaccagaccaaa-tgtca B D Rat tagtcctgcaaccagaccgaa-tgtca B D Kangaroo rat ga-tcctgaagtcagaacaaa-tgtca B D Naked mole-rat ga-tcctacaatcagaccaag-tgtca B D Guinea pig ga-gcctacaatcggaccaac-tatca B D Squirrel ga-tcctacaatcagaccaaa-tgtca B D Rabbit ga-ttctgcagtcagaccaaa-tgtca B D Pika ga-ttctacagacagatcaaa-agtca B D Human ga-tcctaccatcagagcaaa-tgtca B D Chimp ga-tcctaccatcagagcaaa-tgtca B D Gorilla ga-tcctaccatcagagcaaa-tgtca B D Orangutan ga-tcctaccatcagagcaaa-tgtca B D Gibbon ga-tcctaccgtcagagcaaa-tgtca B D Rhesus ga-tattaccatcagagcaaa-cgtca B D Baboon ga-tattaccatcagagcaaa-cgtca B D Marmoset ga-ttctcccatcagagcgaa-tgtca B D Squirrel monkey ga-ttctcccatcagagcgaa-tgtca B D Tarsier ga-tcctgcaaccagaccaaa-tgtca B D Mouse lemur ga-tcctacaatcataccaaa-tgtca B D Bushbaby ga-tcctacaatcagactaaa-ggtca B D Tree shrew ga-tcttacagtcagaccaaa-ggtca B D Pig ga-tcctacaatcagaccaaa-tgtca B D Alpaca ga-tcctacaatcagactaaa-tgtca B D Dolphin ga-gcctacaatcagaccaaa-tgtca B D Sheep ga-acctacaatcagaccaga-tgtca B D Cow ga-gcctacaatcagaccaaa-tgtca B D Cat ga-tcctacaatcagaccaaa-tatca B D Dog gg-tcctatagtcagaccaac-tatcc B D Panda ga-tcctacaatcagaccaag-tatca B D Horse ga-tcctacaatcagaccaaa-tgtca D Little brown bat ga-tcctgcagtcagatcaaa-tgtca B D Megabat ga-tcctacaatcagaccaaa-tgtca B D Hedgehog aa-tcctacagccagagcaaa-tatca B D Shrew ga-ccctacaaaaagaccata-tggta B D Elephant ac-tcctacaatcagagtaaa-tgtca B D Rock hyrax ac-tcctacaattagagcaaa-tgtca B D Tenrec ac-tcccacaagcagagcaaa-tgcca B D Manatee ac-tactacaatcagagcaaa-tgtca B D Armadillo ga-tcctacaatcaggtcaaa-tgtca B D Sloth gc-tcc-------------aa-tgt-- B D Opossum aa-tc--atagttagactaag-tgtca B D Tasmanian devil aa-tc--acagttagactaagatgtcg B D Wallaby aa-tc--atagttagaataag-tgtca B D Stickleback =========================== B D Tetraodon =========================== B D Fugu =========================== B D Medaka =========================== B D Atlantic cod =========================== B D Nile tilapia =========================== B D X. tropicalis =========================== B D Platypus =========================== B D Turkey =========================== B D Coelacanth =========================== B D Lizard =========================== B D Budgerigar =========================== B D Zebra finch =========================== B D Chicken =========================== B D Painted turtle =========================== Inserts between block 7 and 8 in window B D Wallaby 641bp Alignment block 8 of 732 in window, 56698802 - 56698925, 124 bps B D Mouse ggtcgggaagaatcggat--ta-----tagaaggcagtggtgc-ctccacgt-agat-a---ct------ B D Rat ggtagggaggaattggag--ta-----gagaaggcagtgatgc-ttccgggt-agataa---gt------ B D Kangaroo rat gttggggcagtgttgggt--tg-----tggaaaagagcaactc-tttattgt-agatat---tt------ B D Naked mole-rat gttgggaaagcattgtat--ta-----tggagaagagcaaccc-tccactgt-agct-a---tt------ B D Guinea pig gtcgaggaaatattggat--ta-----tagagaagagcaactc-ttccctgt-tgct-a---tt------ B D Squirrel attaggaaagtataggat--ca-----tggagaggcacaactt-ttc-----------a---tt------ B D Rabbit gttggcaaaggattggct--ta----ctggagag-agcaaatc-ttcatggc-agat-a---ct------ B D Pika gctggagaagtgttggat--tg-----tggtg------aaaac-ttcactgt-agtg-a---ct------ B D Human gttgggaaagtattggag--aa-----tggaaaggagcaactt-ttcctttc-agat-a---tt------ B D Chimp gttgggaaagtattggag--aa-----tggaaaggagcaactt-ttcctttc-agat-a---tt------ B D Gorilla gttgggaaagtattggag--aa-----tggaaaggagcaactt-ttcctttc-agat-a---tt------ B D Orangutan gttgggaaagtattggag--aa-----tggaaaggagcaactt-ttcctttt-agat-a---tt------ B D Gibbon gttgggaaagtattggag--aa-----tggaaaggagcaactt-ttcctttt-aga-------t------ B D Rhesus gttgggaaagcattggac--aa-----tggaaaggagcaactt-ttcctttt-agat-a---tt------ B D Baboon gttgggaaagcattggac--aa-----tggaaaggagcaactt-ttcctttt-agat-a---tt------ B D Marmoset gctgggaaagtactggag--aa-----tggaaaggagcaactc-ttccttat-agac-a---tt------ B D Squirrel monkey gctgggaaagtattggag--aa-----tggaaaggagcaactc-ttccttat-agat-a---tt------ B D Tarsier gttaggaaatgtttgaag--ta-----tggagaggagcagctgactcctcgt-agat-a---tt------ B D Mouse lemur cttgggaaactattggat--ta-----gggagaggagcaactc-ttcattgt-agat-g---t------- B D Bushbaby cttggaaaacgattggat--tg-----tggaaaggaacaactc-ttccttgt-agat-g---t------- B D Tree shrew gttggaaaggtattggat--ta----------aggaacaactc-ttctttgg-agat-a---gt------ B D Pig gctgaaaaggtattagat--ca-----tggagaggagcaactc-ttcattct-acat-g---tt------ B D Alpaca gttggaaaagtattagat--ta-----tggagaggagcaactc-ttcattct-acat-g---ct------ B D Dolphin gttgaaaaagtattagat--ta-----tggagaggagcaactc-ttcattct-acat-g---tt------ B D Sheep gttggaaaagtattagat--ta-----tggagagaagcaactc-ttcattct-acat-a---tt------ B D Cow gtcggaaaagtattagat--ta-----tggagagaagcaaccc-ttcgttct-acat-a---tg------ B D Cat gttggaaaagtaatggagtata-----tggagaggagcaactg-ttcgttct-aga-------t------ B D Dog gctggaaaagtagtggattata-----tggagaggagtaactc-ttcattct-aga-------t------ B D Panda gttggaaaagtaatggattata-----tggagaggagcaactt-ttcttact-agat-g---tt------ B D Horse gttggaaaagtattggct--ta-----tggagaggagcaactt-ttcattct-agat-g---tt------ D Little brown bat gttgtaaatgtattgggt--tg-----ttgagaccagtaactc-ttcatt-g-agat-g---tt------ B D Megabat gttggaaaactattgaat--ta-----cggagaggagtaactc-cttattct-agat-g---tt------ B D Hedgehog gctaggaaagtactgggt--ta------gcaaaggagcaactc-agaagggt-gga-------t------ B D Shrew gatgggaaag-attgg--------------------gcaactc-tttatact-aga-------------- B D Elephant gttgagacagtatcggat--ta-----tggtgaggagcaactc---aattcc-agat-attgtt------ B D Rock hyrax gttgagaaagtattggac--tg-----tggagaggagccactc---aattcc-agat-act-ct------ B D Tenrec gtccagaaagtattggat--ta-----tggttcgatgcaactc-ttaattcc-agat-atggtt------ B D Manatee gttgagaaagtattggat--ta-----tggagaggagcaagtc---aattct-agat-a---tt------ B D Armadillo gttggaaaagtactggat--ta-----tggagaagagcacttc-ttcattct-acct-c---tt------ B D Sloth ggtggaattctattggat--aa-----tggagaggagcaattc-ttcattct-gtac-c---tt------ B D Opossum gttggcagtttctttgac--tagtgagcgaggagggtaaaatc-ttcattttgatgt-a---tt------ B D Tasmanian devil cttggcagtttctctgat--tagtgagtggggaggggaagatc-t---ttgtgatgt-a---tttgttgt B D Wallaby ====================================================================== B D Stickleback ====================================================================== B D Tetraodon ====================================================================== B D Fugu ====================================================================== B D Medaka ====================================================================== B D Atlantic cod ====================================================================== B D Nile tilapia ====================================================================== B D X. tropicalis ====================================================================== B D Platypus ====================================================================== B D Turkey ====================================================================== B D Coelacanth ====================================================================== B D Lizard ====================================================================== B D Budgerigar ====================================================================== B D Zebra finch ====================================================================== B D Chicken ====================================================================== B D Painted turtle ====================================================================== Mouse ----gttgtctgtttgtgatgtca--cctttaaacaaa-----cag------------------gtttct Rat ----gttgtctatttgtgatgtca--cttttaaacaag-----cag------------------ggttct Kangaroo rat ----gttgatagt---ggatgtta--accctaaacaat-----ctg------------------gtttct Naked mole-rat ----gttgatgattctgggtgcta--gcgctaaacatc-----ttg------------------atttct Guinea pig ----gctgatgattctggagactg--gctctaagcaac-----ttg------------------cttact Squirrel ----gttgttgattgtggatgtca--gcgttgaacaac-----atg------------------gtttca Rabbit ----tgtgttgactctgggtgcca--gctttaaacaag-----gtg------------------gtt--- Pika ----ttggttggttctggg---ca--gctttaggcagt-----gtg------------------gtttct Human ----attg-tgattttggatgcca--gctttaaacaac-----cca------------------gtttgt Chimp ----attg-tgattttggatgcca--gctttaaacaac-----cca------------------gtttgt Gorilla ----attg-tgattttggatgcca--gctttaaacaac-----cca------------------gtttgt Orangutan ----gttg-tgattttggatgcca--gctttaaataac-----cca------------------gtttgt Gibbon ----gttg-tgattttggatgcca--gctttaaacaac-----cca------------------gtttgt Rhesus ----gttg-tgattttggatgcca--gctttaaacaac-----cca------------------gcttgt Baboon ----gttg-tgattttggatgcca--gctttaaacaac-----cca------------------gcttgt Marmoset ----gttg-tgattttcgatgcca--gctttaaacaac-----cca------------------gattct Squirrel monkey ----gttg-tgatgttcgatgcca--acttgaaacaac-----cca------------------gattcc Tarsier ----gttgttgattttggacacca--actttgaacaac-----ctg------------------gtttct Mouse lemur ---------tgattctggatgcca--gctttaaacaac-----ctgatttttagacaaccacagatttct Bushbaby ---------tgattctggatgtca--gctttaaacaac-----tagatttttagacaaccacatattttt Tree shrew ----gtgcttgattctgggtgcca--actttaaac-ac-----tag------------------gtttct Pig ----gt---tgattctagatgcca--gctttaaacaac-----ctg------------------ttttct Alpaca ----gt---tgattctgggtgcca--gctttaagcaac-----ctg------------------ttttct Dolphin ----gt---tgattctggatacca--gctttaaacaac-----ctg------------------ttttct Sheep ----gt---tgattctgggtgcca--gctttaaacaac-----ctg------------------ttttct Cow ----gt---tgattctgggtgcca--gctttaaacaac-----ctg------------------ttttct Cat ----gt---tgattctggatgcca--gctttaaaca--------tg------------------ttttct Dog ----gt---tgattctggatgcca--gctttaaacgac-----ctg------------------ttctct Panda ----gt---tgattctggatgcca--gctttaaacaac-----ctg------------------ttttct Horse ----gt---tgattctgcatgcca--gctttaaacaac-----ctg------------------ttttct Little brown bat ----gt---tgattctggatgcca--gctttaaacaac-----ccg------------------ttttct Megabat ----at---tgattctggatgcca--gc-ttaaacaac-----ctg------------------ttttct Hedgehog ----gt---tgattctgaatgcca--gctt---acagcataaccta------------------ttttct Shrew ---------tgattctggatgcca--actttaaacagc------------------------------ct Elephant ----gt---taattctgagtgcca--gctttaaacaac-----ctg------------------gttttt Rock hyrax ----gt---tgatcctaaatgcca--gctttaaacaac-----cta------------------gtgttt Tenrec ----gt---tgcttctgagtgcca--acttcatacaac-----cca------------------acttca Manatee ----gt---tgattctgaatgcca--gctttaaacaac-----ccc------------------gttttt Armadillo ----gt---tgacttggaatgcca--gctttaaacaag-----ctt------------------gtttct Sloth ----gt---tgattctgaatgcca--gctttaaataac-----ctt------------------gtttct Opossum ----gt---tttt----aatactc--gtgttcaa-aat-----ttt------------------gcttgt Tasmanian devil tgtggt---tttttttaaatgctctaacattgaa-aat-----ctt------------------gcttgt Wallaby ====================================================================== Stickleback ====================================================================== Tetraodon ====================================================================== Fugu ====================================================================== Medaka ====================================================================== Atlantic cod ====================================================================== Nile tilapia ====================================================================== X. tropicalis ====================================================================== Platypus ====================================================================== Turkey ====================================================================== Coelacanth ====================================================================== Lizard ====================================================================== Budgerigar ====================================================================== Zebra finch ====================================================================== Chicken ====================================================================== Painted turtle ====================================================================== Mouse gac-aaatctgtgcatat-aagaaggtaa---tttct Rat gac-aaatctgtgcatgt-aaaagggtaa---tttct Kangaroo rat gga-aaatctgtaaatat-aaaaagatac---tttct Naked mole-rat gac-aaatctgtgaatat-aaaacactga---tttgt Guinea pig gac-aaatctgcgaacat-aaaacaagga---tttgt Squirrel gac-aaatctgtaaacac-agaatgataa---tttct Rabbit ---------tgtgaacat-aaaatgatca---tttct Pika gac-acatctgtgaaagg-aaaatgatca---tttct Human gac-acatttgtgattataaaaatgatca---tttct Chimp gac-acatttgtgattataaaaatgatca---tttct Gorilla gac-acatttgtgattataaaaatgatca---tttct Orangutan gac-aaatttgtgattataaaaatgatca---tttct Gibbon gac-aaatttgtgattataaaaatgatca---tttct Rhesus gac-aaatttgtgattataaaaatgatca---tttct Baboon gac-aaatttgtgattataaaaatgatca---tttct Marmoset gac-aaatttgtgactat-aaaatgatga---tttct Squirrel monkey gac-aagttcctgactat-aaaatgatga---tttct Tarsier gac-taatctaggaatat-gaaatgatca---tttct Mouse lemur gac-a-atctgtgaatat-aaaatgattg---tttgt Bushbaby gac-agatctgtgaatat-gaaatcat-----tttgt Tree shrew gac-aaatttgtgaacac-caaatgataa---ttttt Pig gacaaaaattgtgaatat-aagatgattc---tttcc Alpaca gac-aaatctgtgaatat-aaaatgatta---tttcc Dolphin gac-aagtctgtgaatat-aaaatgatta---gttct Sheep gac-aaatctgtgaatat-aaaatgatta---tttct Cow gac-aaatctatgaatat-aaaatgatta---tttct Cat gac-aaatccatgaacat-aagatgatta---tttct Dog gac-aaatctatgaatat-aaaatgatta---tttct Panda gac-aaatctgtgactat-a----------------- Horse gac-aaatctgtgaatct-aaaatgatta---t---- Little brown bat gac-aagtctgtgaatat-aaaaagattg---tttct Megabat gat-aaacgtgtgactat-aaaatgatta---gttct Hedgehog gac-aagtcttagagtac-aaaataatga---tttct Shrew aac-aaatttgtatatgt-aaaataatta---ttttt Elephant gac-aaatttgtgaatat-agcac--------tttgt Rock hyrax gac-aaatttgtg-atat-aatacttttttgtttttt Tenrec gac-acatttgtgactag-agc----------tttct Manatee tac-aaatttgtgaatat-aacgc--------tttct Armadillo gat-aactc--tgaacat-cacac--------cttct Sloth gac-tactttgtgaatat-aacgc--------cttct Opossum gaa-aaatc----aatat-tcca-------------- Tasmanian devil gaa-aaaca----attat-tcta-------------- Wallaby ===================================== Stickleback ===================================== Tetraodon ===================================== Fugu ===================================== Medaka ===================================== Atlantic cod ===================================== Nile tilapia ===================================== X. tropicalis ===================================== Platypus ===================================== Turkey ===================================== Coelacanth ===================================== Lizard ===================================== Budgerigar ===================================== Zebra finch ===================================== Chicken ===================================== Painted turtle ===================================== Inserts between block 8 and 9 in window B D Kangaroo rat 1bp B D Naked mole-rat 1bp B D Guinea pig 1bp B D Squirrel 1bp B D Rabbit 1bp B D Pika 1bp B D Human 1bp B D Chimp 1bp B D Gorilla 1bp B D Orangutan 1bp B D Gibbon 1bp B D Rhesus 1bp B D Baboon 1bp B D Marmoset 1bp B D Squirrel monkey 1bp B D Tarsier 1bp B D Mouse lemur 1bp B D Bushbaby 1bp B D Tree shrew 1bp B D Pig 17bp B D Alpaca 17bp B D Dolphin 17bp B D Sheep 16bp B D Cow 16bp B D Cat 17bp B D Dog 17bp B D Panda 17bp D Little brown bat 17bp B D Megabat 17bp B D Shrew 17bp B D Elephant 1bp B D Rock hyrax 1bp B D Tenrec 1bp B D Manatee 1bp B D Armadillo 1bp B D Sloth 1bp Alignment block 9 of 732 in window, 56698926 - 56698996, 71 bps B D Mouse ccaa-gtgactgctc--t--ttg-aag-cacctgtatcag---------aggg-------------aag- B D Rat ccaa-atgaccgctc--t--ttg-aaa-cacctgtatcag---------atgg-------------gag- B D Kangaroo rat caaa-acaatcaccc--tc-ttg-aag-caca-gtatcag---------atga-------------aag- B D Naked mole-rat caaa-atgaacatcc--c--ttc-tag-accctttatcag---------atgg-------------aag- B D Guinea pig caaa-atgaacatcc--c--ttc-taa-gctctttatcag---------atga-------------aag- B D Squirrel tgaa-atgatcaccc--c--ttt-aaa-acactgttttgg---------atgg-------------aag- B D Rabbit taaa-atgatcaccc--c--ctc-aaa-gcactaggtcac---------atgg-------------aag- B D Pika taaa-atgatcaccc--c--tac-aaatgccctgtgg------------atggaaggaagtgcttaaag- B D Human caaaaatgctcactc--t--ttt-aaa-gcactgtgttag---------atgg-------------aag- B D Chimp caaaaatgctcactc--t--ttt-aaa-acactgtgttag---------atga-------------aag- B D Gorilla caaaaatgctcacac--t--ttt-aaa-gcactgtgttag---------atgg-------------aag- B D Orangutan caaaaatgctcactc--t--ctt-aaa-gcactgtgttag---------atga-------------aag- B D Gibbon caaaaatgctcactc--t--ctt-aaa-gcactgtggtag---------atgg-------------aag- B D Rhesus caaaaatgatcactc--t--ctt--aa-gcactgtgttag---------atgg-------------acg- B D Baboon caaaaatgatcactc--t--ctt--aa-gcactgtgttag---------atgg-------------acg- B D Marmoset caaaaatgatcactc--t--ctt-aaa-gcact-tgtcag---------atgg-------------aag- B D Squirrel monkey caaaaatgatcactc--t--ctt-aag-gcactgtgtcac---------atgg-------------aag- B D Tarsier caagat-------------------ga-ttactgtgtcgg---------atgg-------------aagc B D Mouse lemur gaaa------------------------------tgtcag---------atgg-------------aag- B D Bushbaby gaaa------------------------------tgtcag---------atgg-------------aag- B D Tree shrew c------------tc--c--ttc-aaa-gcactgcatcag---------atgg-------------aag- B D Pig caaa-atgactgccc--c--ttt-gaa-gcactgtgttag---------atgg-------------aag- B D Alpaca caaa-atgattgccc--c--ttt-gaa-gcactgtgtcag---------atgg-------------aat- B D Dolphin caaa-atgattgccc--c--ttt-gaa-gcactgtatcag---------atgg-------------aag- B D Sheep caaa-atgattgccctgc--ttt-gaa-gctcagtatcag---------atgg-------------aag- B D Cow caaa-atgattgccctgc--ttt-gaa-gctcagtatcag---------atgg-------------aag- B D Cat caaa-atgattgctc--c--ttc-aaa-gcactgtgtcag---------atgg-------------aag- B D Dog caaa-atgattgccc--t--ttcaaaa-gcactgtgtcag---------atgg-------------aag- B D Panda caat-atgattgccc--c--ttc-aaa-gcactgtgtcag---------atgg-------------aag- B D Horse -----atgatcaccc--c--gtg-gaa-gcactgtgtcag---------atgc-------------aaa- D Little brown bat caaa-atgatcactg--c--ttc-cag-gcactgtgtcag---------ttag-------------aag- B D Megabat taaa-atgatcactg--c--ttc-caa-gcactgtgtcag---------atgg-------------atg- B D Hedgehog caaa-atcatgacca--ccatcc-tgt-gaagtgcatc-------------------------------- B D Shrew caaa-aggattttca--t--ttc-tga-gga--------------------------------------- B D Elephant taaa-atgatcatcc--t--gtt-gaa-gcaccgtgtcag---------atgg-------------aag- B D Rock hyrax ttta-aagatcatcc--c--ttg-gaa-gcactgtgtcag---------atgg-------------aaa- B D Tenrec caca-gtggccatct--t--ttc-tga-gcacagtgtcag---------atgg-------------aga- B D Manatee caaa-atgatcatcc--c--ttt-gaa-ccaccgtgtccg---------atgg-------------aag- B D Armadillo caaa-atgattgccc--c--tta-gaa-gcactgtgtcag---------atgg-------------aag- B D Sloth ccaa-ctgattgccc--c--ttc-gaa-gccctgtgtcag---------atgg-------------aag- B D Opossum ----cttaatcattg--c--tct-tta-acattccttcattgtttatatgtat-------------atg- B D Tasmanian devil ----tctaatcattg--c--tcc-taa-acattctctcgttg-------gtat-------------att- B D Wallaby ====================================================================== B D Stickleback ====================================================================== B D Tetraodon ====================================================================== B D Fugu ====================================================================== B D Medaka ====================================================================== B D Atlantic cod ====================================================================== B D Nile tilapia ====================================================================== B D X. tropicalis ====================================================================== B D Platypus ====================================================================== B D Turkey ====================================================================== B D Coelacanth ====================================================================== B D Lizard ====================================================================== B D Budgerigar ====================================================================== B D Zebra finch ====================================================================== B D Chicken ====================================================================== B D Painted turtle ====================================================================== Mouse --------------tg-tgtaaaacca-agta-----------------------taa-acggcactgtc Rat --------------tg-tataaaatca-agta-----------------------taa-aagacactgtc Kangaroo rat --------------tg-tttaaaataa-agat-----------------------aaa-gtggtgttgtc Naked mole-rat --------------t--tttaaaatca-agtc-----------------------atg-gt-gttttgtc Guinea pig --------------tg-tttaaaatca-aatc-----------------------ata----gttttgtc Squirrel --------------tg-tttaaaatta-agct-----------------------atg-gtggctttgtc Rabbit --------------tg-tttaaaacca-agtt-----------------------ttaagtgccttggtc Pika --------------tg-tttaaaacca-gatt-----------------------ataagggacttcctc Human --------------tg-tttaaaatca-agtt-----------------------aca-atggctttgcc Chimp --------------tg-tttaaaatta-agtt-----------------------aca-atggctttgcc Gorilla --------------tg-tttaaaatca-agtt-----------------------aca-atggctttgcc Orangutan --------------tg-tttaaaatca-agtt-----------------------aca-atggctttgcc Gibbon --------------tg-tttaaaatca-agtt-----------------------aca-atggctttgcc Rhesus --------------tg-tttaaaatca-agtt-----------------------aca-atggctttgcc Baboon --------------tg-tttaaaatca-agtt-----------------------aca-atggctttgcc Marmoset --------------tg-tttaaaatca-agtt-----------------------aca-atggctttgtc Squirrel monkey --------------tg-tttaaaatca-agtt-----------------------aca-atggctttgtc Tarsier tagctatagtgacttg-ttaaaaatta-agct-----------------------ata-gtggctttgtc Mouse lemur --------------tg-ttt-aaatca-tg-t-----------------------ata-gtggctttgtc Bushbaby --------------tg-tttaaaatca-agtt-----------------------aca-gtggctttgtc Tree shrew --------------tg-ttt-aaatcc-agtt-----------------------ata-atggctttatc Pig --------------ta-tttaaaatca-agtt-----------------------gta-ctagctttgtc Alpaca --------------ta-tttaaaatca-agtt-----------------------gta-atagcttggtt Dolphin --------------ta-tttaaaatca-agtt-----------------------gta-gtagttttgtc Sheep --------------tg-tttaagatc---ata-----------------------gta-gtagctttgtc Cow --------------tgttttaagatc---gta-----------------------gta-gtagctttgtc Cat --------------ta-tttaaaatca-agtt-----------------------gta-gcggctttatc Dog --------------ta-tttaaactca-agtt-----------------------gtg-gtggctttgtc Panda --------------ta-tttaaaatca-agtt-----------------------gta-gtggctttgtc Horse --------------tg-tttaaaatca-agtt-----------------------gta-gtggctttgtc Little brown bat --------------tg-tttgaaatca-aatt-----------------------gtg-gtggctctgtc Megabat --------------tg-tttaaaatca-agtt-----------------------gta-gtggctttgtc Hedgehog ---------------------caatca-ggtt-----------------------gta-gcagcgttgtc Shrew ----------------------aatca-agtt-----------------------ata-gtggctttgtc Elephant --------------ta-tttaaaatca-agtt-----------------------cca-gtggctttgtc Rock hyrax --------------tg-tttagaatca-aatt-----------------------aca-gtggctttgtc Tenrec --------------ta-ttta-aatca-ggtt-----------------------gcc-gaggcttggtc Manatee --------------tg-tttcaaatca-agtt-----------------------aca-gtggctttgtc Armadillo --------------tg-tttaaaatca-agtt-----------------------aca-gtagctttatc Sloth --------------ta-cttaaaatca-agtt-----------------------aca-gtggctttgtc Opossum --------------ta-tatatatatatagttactgggaagagttggggtggggggag-gaagtctaa-- Tasmanian devil --------------tg-tgtgtgtcta-aatttctaaaaaaa-------------gaa-aaagtccaa-- Wallaby ====================================================================== Stickleback ====================================================================== Tetraodon ====================================================================== Fugu ====================================================================== Medaka ====================================================================== Atlantic cod ====================================================================== Nile tilapia ====================================================================== X. tropicalis ====================================================================== Platypus ====================================================================== Turkey ====================================================================== Coelacanth ====================================================================== Lizard ====================================================================== Budgerigar ====================================================================== Zebra finch ====================================================================== Chicken ====================================================================== Painted turtle ====================================================================== Mouse --a Rat --a Kangaroo rat --a Naked mole-rat --a Guinea pig --a Squirrel --a Rabbit --a Pika --a Human --a Chimp --a Gorilla --a Orangutan --a Gibbon --a Rhesus --a Baboon --a Marmoset --a Squirrel monkey --a Tarsier --a Mouse lemur --a Bushbaby --a Tree shrew --a Pig --a Alpaca -aa Dolphin --a Sheep --a Cow --a Cat --a Dog --a Panda aaa Horse --a Little brown bat --a Megabat --a Hedgehog --a Shrew --a Elephant --a Rock hyrax --a Tenrec --a Manatee --a Armadillo --a Sloth --a Opossum --- Tasmanian devil --- Wallaby === Stickleback === Tetraodon === Fugu === Medaka === Atlantic cod === Nile tilapia === X. tropicalis === Platypus === Turkey === Coelacanth === Lizard === Budgerigar === Zebra finch === Chicken === Painted turtle === Inserts between block 9 and 10 in window B D Human 5bp B D Chimp 5bp B D Gorilla 5bp B D Orangutan 7bp B D Gibbon 7bp B D Rhesus 7bp B D Baboon 7bp B D Marmoset 7bp B D Squirrel monkey 7bp B D Tarsier 7bp B D Mouse lemur 227bp B D Bushbaby 7bp B D Tree shrew 5bp B D Pig 5bp B D Alpaca 5bp B D Dolphin 9bp B D Sheep 5bp B D Cow 5bp B D Cat 5bp B D Dog 5bp B D Panda 5bp B D Horse 5bp D Little brown bat 5bp B D Megabat 5bp B D Hedgehog 5bp B D Shrew 3bp Alignment block 10 of 732 in window, 56698997 - 56699002, 6 bps B D Mouse ca------------cttc B D Rat aa------------cttc B D Kangaroo rat aa------------cttt B D Naked mole-rat aaacaccatgacttcttc B D Guinea pig aa----tgtgg-tccttc B D Squirrel aa----cgtcact-cttc B D Rabbit ca------------cttc B D Pika ca------------tttc B D Human -----------ct-cctc B D Chimp -----------ct-cctc B D Gorilla -----------ct-cctc B D Orangutan -----------ct-cctt B D Gibbon -----------gt-cctc B D Rhesus -----------ct-cctc B D Baboon -----------ct-cctc B D Marmoset -----------at-cctc B D Squirrel monkey -----------at-cctt B D Tarsier -----------ct-cctc B D Bushbaby -----------ct-cctc B D Tree shrew -----------ct-cctc B D Pig cg---------gt-tctc B D Alpaca ca---------gt-cctc B D Dolphin ca---------gt-cctc B D Sheep cc---------gt-cctc B D Cow ca---------gt-cgtc B D Cat ca---------gt-cctc B D Dog ca---------gt-cctc B D Panda ca---------gt-tctc B D Horse ag---------gt-ccta D Little brown bat tg---------gt-cctc B D Megabat tg---------gt-cctc B D Hedgehog tg---------tt-cctt B D Shrew tg---------ct-tctc B D Elephant ----aacttcgct-cctt B D Rock hyrax ----aacttcact-cttc B D Tenrec ----aacttgagt-cctc B D Manatee ----aacttcgct-cctc B D Armadillo ----aacattgct-cttc B D Sloth ----aaca-tgct-cttc B D Opossum -----------tt-cttc B D Tasmanian devil -----------cc-tttc B D Wallaby ================== B D Stickleback ================== B D Tetraodon ================== B D Fugu ================== B D Medaka ================== B D Atlantic cod ================== B D Nile tilapia ================== B D X. tropicalis ================== B D Platypus ================== B D Turkey ================== B D Coelacanth ================== B D Lizard ================== B D Budgerigar ================== B D Zebra finch ================== B D Chicken ================== B D Painted turtle ================== B D Mouse lemur ================== Inserts between block 10 and 11 in window B D Rabbit 7bp B D Pika 309bp Alignment block 11 of 732 in window, 56699003 - 56699064, 62 bps B D Mouse tatgcgcggagtcca-----gaag-cagaactaga-tgaa----tgt---agtc------------ttca B D Rat tatacatggggccca-----gaag-cagaattaga-tgca----tgc---aatc------------ttca B D Kangaroo rat caccactagaatcca-----gaaa-caaaaatgca-taac----tt-----gtc------------ttct B D Naked mole-rat tgcccataggaccta-----gaga-caataatatatttct----tct---agtc------------ttca B D Guinea pig tgcccataggacctg-----gaga-taataatatattgtg----tct---agtc------------ttca B D Squirrel aatccctagctccaaaataggaaa-caaaaagacatcact----tgt---ggtc------------t--a B D Rabbit catccgtaggactca-----aaga-cgaaaatatattg---------------c------------ttca B D Human cacccataggaccca-----aaga-caaacatacattgtt----tgt---agcc------------ttca B D Chimp cacccataggaccca-----aaga-caaacatacattgtt----tgt---agcc------------ttca B D Gorilla cacccataggaccca-----aaga-caaacatacattgtt----tgt---agcc------------ttca B D Orangutan cacccatgggaccca-----aaga-caaacatacattgtt----tgt---agcc------------ttca B D Gibbon cacccataggaccca-----aaga-caaacatacattgtt----tgt---agct------------ttca B D Rhesus catccataggaccca-----aaga-caaacatacattgtt----tgt---agcc------------ttca B D Baboon catccataggaccca-----aaga-caaacatacattgtt----tgt---agcc------------ttca B D Marmoset cacccataggaccca-----aaga-caaaaatacattgtt----tgt---agcc------------ttca B D Squirrel monkey cacccataggaccca-----aaga-caaaaatactttgtt----tgt---agcc------------ttca B D Tarsier cacccatgggaccct-----aaaa-tgaaaatatattgct----tgt---agcc------------ttca B D Bushbaby cacccaaagtaccca-----aaga-taaaaacatcatcttcaaatgt---ctcctctttgaaattattca B D Tree shrew cacccgtagacccca-----tgga-cacaaatgcatttct----tgg---agcc------------ttca B D Pig -acccacaggttcca-----aaga-caa------actgct----cat---agtc------------ttca B D Alpaca cacccataggtccca-----aaga-caa------actgct----cag---ggtc------------ttca B D Dolphin tacccatgggtccca-----aaga-cca------actgct----cat---agtt------------ttca B D Sheep cacccatgggtccca-----aaga-caa------actgct----cct---agtt------------ttca B D Cow cacccatgggtccca-----aaga-caa------actgct----cct---agtt------------ttca B D Cat cacccataggtccca-----aaga-caaaaacacattgct----cat---agtc------------ttca B D Dog cacccataggtccca-----aaga-caaaaacacattgct----cat---agtc------------ttca B D Panda cacctataggttcca-----aaga-ccgaaacacattgca----tat---agtc------------ttca B D Horse cacccataggtccca-----aaga-caaaaacacattgct----tcc---agtc------------ttta D Little brown bat cagccatgggtccca-----aaga-caagaacatgctgcg----cat---agtt------------ttca B D Megabat caaccatagatccca-----gaga-caaaaacacactgct----cat---agtc------------ttca B D Hedgehog catccctagagccca-----caga-gaaaaacaaattgct----gat---agtt------------ttca B D Shrew cacctatagaaccca-----caaattcaaaacaaactgct----gac---tgtt------------ttca B D Elephant tacccacaggtacca-----ggca-caaaaatacattcct----tgt---aatc------------ttca B D Rock hyrax tacccataggtacca-----agca-caaaaattcattctt----tat---agtc------------ttca B D Tenrec catccataggtgcca-----aaca-caaaaatacattcct----ggt---agcc------------ttta B D Manatee tacccataggtacca-----agca-caaaaatacattcct----c-t---agtc------------ttca B D Armadillo cacctatatgtacca-----aaga-caaaaatagacaacc----agg---agtc------------tttc B D Sloth cagctataggtcaca-----gaga-caaaaatagactgct----ggt---agtc------------tttc B D Opossum aatccgtgtcacttc-----aaaa-taaaattatgtgaag----tgcctttgtc------------ttta B D Tasmanian devil agtccatatcactga-----aaaa-taatatgatgtgaag----tatgcaagtc------------ctaa B D Wallaby ====================================================================== B D Pika ====================================================================== B D Stickleback ====================================================================== B D Tetraodon ====================================================================== B D Fugu ====================================================================== B D Medaka ====================================================================== B D Atlantic cod ====================================================================== B D Nile tilapia ====================================================================== B D X. tropicalis ====================================================================== B D Platypus ====================================================================== B D Turkey ====================================================================== B D Coelacanth ====================================================================== B D Lizard ====================================================================== B D Budgerigar ====================================================================== B D Zebra finch ====================================================================== B D Chicken ====================================================================== B D Painted turtle ====================================================================== B D Mouse lemur ====================================================================== Mouse a----atat---ct--tt---------------------------------------------------- Rat a----atat---ct--tt---------------------------------------------------- Kangaroo rat a----gcat---ct--gc---------------------------------------------------- Naked mole-rat a----atat---tt--cc---------------------------------------------------- Guinea pig a----atat---tt--cc---------------------------------------------------- Squirrel a----gtat---ct--cc---------------------------------------------------- Rabbit a----atac---ct--cc---------------------------------------------------- Human c----atat---ct--ct---------------------------------------------------- Chimp c----atat---ct--ct---------------------------------------------------- Gorilla c----atat---ct--ct---------------------------------------------------- Orangutan c----atat---ct--ct---------------------------------------------------- Gibbon c----atat---ct--ct---------------------------------------------------- Rhesus c----atat---ct--ct---------------------------------------------------- Baboon c----atat---ct--ct---------------------------------------------------- Marmoset c----caat---ct--ct---------------------------------------------------- Squirrel monkey c----aaat---ct--ct---------------------------------------------------- Tarsier a----atag---ct--cc---------------------------------------------------- Bushbaby a----atat---ct--cc---------------------------------------------------- Tree shrew a----atatcccct--ct---------------------------------------------------- Pig a----atat---cc--tc---------------------------------------------------- Alpaca a----ctat---ct--tc---------------------------------------------------- Dolphin a----atat---ct--tc---------------------------------------------------- Sheep a----atat---ct--tt---------------------------------------------------- Cow a----atat---ct--tc---------------------------------------------------- Cat a----atat---ct--ct---------------------------------------------------- Dog a----atat---ct--tt---------------------------------------------------- Panda a----aagt---ct--tg---------------------------------------------------- Horse a----gtat---ct--tc---------------------------------------------------- Little brown bat a----acat---ct--tc---------------------------------------------------- Megabat a----acat---ct--tc---------------------------------------------------- Hedgehog t----a-ac---ctctct---------------------------------------------------- Shrew g----atat---cttatt---------------------------------------------------- Elephant a----atac---ct--tctttgaaattacacttggtcacaaaaaagatgccaatgattcaaaacttcgct Rock hyrax a----gtat---ct--tc---------------------------------------------------- Tenrec a----a------------------attacacctgatc----------------------------tctct Manatee a----ata-------------------------------------------------------------- Armadillo a----atat---ct--t----------------------------------------------------- Sloth a----atat---ct--tc---------------------------------------------------- Opossum actttgtgt---ct--ct---------------------------------------------------- Tasmanian devil accctgtgt---ct--ct---------------------------------------------------- Wallaby ====================================================================== Pika ====================================================================== Stickleback ====================================================================== Tetraodon ====================================================================== Fugu ====================================================================== Medaka ====================================================================== Atlantic cod ====================================================================== Nile tilapia ====================================================================== X. tropicalis ====================================================================== Platypus ====================================================================== Turkey ====================================================================== Coelacanth ====================================================================== Lizard ====================================================================== Budgerigar ====================================================================== Zebra finch ====================================================================== Chicken ====================================================================== Painted turtle ====================================================================== Mouse lemur ====================================================================== Mouse --------------------------------------------------------t---t-t------- Rat --------------------------------------------------------t---t-t------- Kangaroo rat --------------------------------------------------------t---c-t-ttaa-- Naked mole-rat --------------------------------------------------------t---t-t-ttat-- Guinea pig --------------------------------------------------------t---t-t-ttaa-- Squirrel --------------------------------------------------------t---t-t---aa-- Rabbit --------------------------------------------------------t---c-t-ttga-- Human --------------------------------------------------------t---t-----ga-- Chimp --------------------------------------------------------t---t-----ga-- Gorilla --------------------------------------------------------t---t-----ga-- Orangutan --------------------------------------------------------t---t-----ga-- Gibbon --------------------------------------------------------t---t-----ga-- Rhesus --------------------------------------------------------t---t-----ga-- Baboon --------------------------------------------------------t---t-----ga-- Marmoset --------------------------------------------------------t---t-----gaaa Squirrel monkey --------------------------------------------------------t---t-----ga-- Tarsier --------------------------------------------------------t---t-t-tgga-- Bushbaby --------------------------------------------------------tctat-----ga-- Tree shrew --------------------------------------------------------t---t-----aa-- Pig --------------------------------------------------------t---c-t-ttta-- Alpaca --------------------------------------------------------t---c-t-taaa-- Dolphin --------------------------------------------------------t---c-t-ttaa-- Sheep --------------------------------------------------------t---c-t-ttaa-- Cow --------------------------------------------------------t---c-t-ttaa-- Cat --------------------------------------------------------t---c-t-ttaa-- Dog --------------------------------------------------------t---c-t-ttaa-- Panda --------------------------------------------------------t---ctt-ttaa-- Horse --------------------------------------------------------c---t-t-ttaa-- Little brown bat --------------------------------------------------------t---c-t-ttaa-- Megabat --------------------------------------------------------t---c-t-ttaa-- Hedgehog --------------------------------------------------------t---c-t-ctaa-- Shrew --------------------------------------------------------t---t-t-taaa-- Elephant cctttacccacaggtaccaggcacaaaaatacattccttgtagtcttcaaatacctt---c-t-ttaa-- Rock hyrax --------------------------------------------------------t---c-t-ttaa-- Tenrec ctctctctc-------------------------tctctctctctctctctctctct---c-t-ct---- Manatee --------------------------------------------------------t---c-t-ttaa-- Armadillo --------------------------------------------------------------c-ttaa-- Sloth --------------------------------------------------------c---c-c-ttaa-- Opossum --------------------------------------------------------t---t-t-aaag-- Tasmanian devil --------------------------------------------------------t---t-taaaag-- Wallaby ====================================================================== Pika ====================================================================== Stickleback ====================================================================== Tetraodon ====================================================================== Fugu ====================================================================== Medaka ====================================================================== Atlantic cod ====================================================================== Nile tilapia ====================================================================== X. tropicalis ====================================================================== Platypus ====================================================================== Turkey ====================================================================== Coelacanth ====================================================================== Lizard ====================================================================== Budgerigar ====================================================================== Zebra finch ====================================================================== Chicken ====================================================================== Painted turtle ====================================================================== Mouse lemur ====================================================================== Mouse ----------------------------------cca--------ata Rat -------------------c-----c--------ccc--------ata Kangaroo rat --aattatac-acggccaat-----t--------tca--------ata Naked mole-rat --aattacac-ttggtcact-----taaaagaagccagcaatttgata Guinea pig --aattacac-ttggtcact-----t-aaagaagtca----------- Squirrel --aattttat-ttggtcact-----t-aaagatgccactaattcaata Rabbit --aattacactttagtcact-----t-aaagatgccaatgatttaata Human --aactatac-ctggtcact-----g-aaaaatgccaataattcaata Chimp --aactatac-ctggtcact-----g-aaaaacgccaataattcaata Gorilla --aactatac-ctggtcact-----g-aaaaacgccaataattcaata Orangutan --aactatac-ctggtcaat-----g-aaaaatgccaataattcaata Gibbon --aactatac-ttggtcact-----g--aaaatgccaataattcaata Rhesus --aactacac-ctggacacc-----g-aaaaatgccaataattcaata Baboon --aactacac-ctggacacc-----g-aaaaatgccaataattcaata Marmoset ctaactatac-ctggtcact-----g-aaaaatggcaatgattcaata Squirrel monkey --aactatac-ctggtcact-----g-aaaaatggcagtgattcaata Tarsier --aattatac-ctgggcact-----g-aaaaatgtcagtgactcagta Bushbaby --aattactc-ctggccact-----g-aaaaacaccagtgattcaata Tree shrew --aattacac--tggtttct-----t-taaaataccaatgattcaata Pig --aa-------------------------------------------- Alpaca --at-------------------------------------------- Dolphin --aa-------------------------------------------- Sheep --aa-------------------------------------------- Cow --aa-------------------------------------------- Cat --aa-------------------------------------------- Dog --aa-------------------------------------------- Panda --aa-------------------------------------------- Horse --aa-------------------------------------------- Little brown bat --aa-------------------------------------------- Megabat --aa-------------------------------------------- Hedgehog --aa-------------------------------------------- Shrew --aa-------------------------------------------- Elephant --aattacac-ttggtcaca-----aaaaagatgccaatgattcaata Rock hyrax --aattacac-ttggtcaca-----aaaaagatgccagtgatttcata Tenrec -------ctc-tctctcacacacacacacacaccccaatgatccaata Manatee --aattacac-ttggtcaca-----aaaaagatgccaatgattcacta Armadillo --aattacat-ttggtctc------ataaagatgtcagtgatccaata Sloth --aattacac-ttggtctc------ataaagatgccagtgattcaata Opossum --aagtagac------taat-----agaa-----------aatgaata Tasmanian devil --aagcatac------taat-----aaaaaagtgataacgaatgaata Wallaby ================================================ Pika ================================================ Stickleback ================================================ Tetraodon ================================================ Fugu ================================================ Medaka ================================================ Atlantic cod ================================================ Nile tilapia ================================================ X. tropicalis ================================================ Platypus ================================================ Turkey ================================================ Coelacanth ================================================ Lizard ================================================ Budgerigar ================================================ Zebra finch ================================================ Chicken ================================================ Painted turtle ================================================ Mouse lemur ================================================ Inserts between block 11 and 12 in window B D Pig 37bp B D Alpaca 36bp B D Dolphin 37bp B D Sheep 142bp B D Cow 37bp B D Cat 37bp B D Dog 37bp B D Panda 37bp B D Horse 37bp D Little brown bat 37bp B D Megabat 37bp B D Hedgehog 37bp B D Shrew 36bp Alignment block 12 of 732 in window, 56699065 - 56699097, 33 bps B D Mouse tgcataactgtagat---attat-tattattattt--------gg------------- B D Rat tgca-aactgtagat---gttat-gaaaatcttttaggggg--gg------------- B D Kangaroo rat tgtacaagcataggt---attgtgggccatcattt-----t--ac------------- B D Naked mole-rat tacacaaccctaggt---gtcgt-ggtaatcatcctataca--gt------------- B D Guinea pig -------------gt---gattt-ggta-------tgtacaacat------------- B D Squirrel tgcacaacaatcgat---attgt-ggtaatcacct-----t--ac------------- B D Rabbit tggacaactctgtgt---acagt-agtaatcacct-----t--at------------- B D Human ttctcaaccccaggt---attat-agtaattactt-----t--a-------------- B D Chimp ttctcaaccccaggt---attat-agtaattactt-----t--a-------------- B D Gorilla ttctcaaccccaggt---attat-agtaattactt-----t--a-------------- B D Orangutan ttctcaaccccaggt---attat-agtaattactt-----t--a-------------- B D Gibbon ttctcaaccccaggt---attat-aatcattactt-----t--a-------------- B D Rhesus tgcacaaccctaggt---attat-agtaatcattt-----t--a-------------- B D Baboon tgcacaaccctaggt---attat-agtaattgctt-----t--a-------------- B D Marmoset tgcacaactccaagt---atcat-agtaatt------------a-------------- B D Squirrel monkey tgcacgattctaagt---atcat-agtaatc------------a-------------- B D Tarsier tgcacaaacctacgt---attct-agtaatctgtg-----t--a-------------- B D Bushbaby tgcacaaccccaagt---actgt-ggtaatcactt-----g--a-------------- B D Tree shrew tgcacaaccctgtat---attgc-ggtaatcaccc-----c--a-------------- B D Pig tgcatacttttagg------------taatcagtt-----t--a-------------- B D Alpaca ggcacacctctaggc---attga-gctaatcattt-----t--a-------------- B D Dolphin tgtacacctctaggt---atcgt-ggtaatcagtt-----t--a-------------- B D Cow tgcacacctcttggt---attgt-ggtaatcggtt-----t--a-------------- B D Cat ggcacacctttaggt---attgt-ggtaatcattt-----t--a-------------- B D Dog ggcacacttctaggt---attgt-ggtcatcagtt-----t--a-------------- B D Panda ggcacacttctaggt---attgt-ggtaatcagtt-----t--a-------------- B D Horse tgcacaaccctaagt---attgt-ggtaatcactt-----t--a-------------- D Little brown bat ggcaca-ccctaggt---acagt-ggtaatcagtt-----t--a-------------- B D Megabat tgcacacccctaggt---attgt-ggtaatcagtt-----c--a-------------- B D Hedgehog tacacaaccctaggc---attgt-ggtaagcagtt-----t--a-------------- B D Shrew tgcacaactatatgt---attgt-ggtaatcgata-----t--g-------------- B D Elephant tccacaaccctcagt---attgt-aataatcagtt-----t--a-------------- B D Rock hyrax tgcataaccctcagg---attgt-aataatcactt-----c--a-------------- B D Tenrec tgcacaaacttcagc---attgt-ggtaattattt-----c--a-------------- B D Manatee tgcacaaccctcagt---attgt-aataatcactt-----t--a-------------- B D Armadillo tgtgcaaccttaggt---gtcat-ggcaatcgttt-----t--a-------------- B D Sloth tgcacagccctaggt---gtcat-ggtaatcactt-----t--a-------------- B D Opossum agcattgccttaggc----tttt-ag-aat--ttt-----t--a-tcgcttatatttg B D Tasmanian devil agcatagctttaggttaaatttt-ag-aattgttt-----t--g-tcac-tatatttg B D Wallaby ========================================================== B D Pika ========================================================== B D Sheep ========================================================== B D Stickleback ========================================================== B D Tetraodon ========================================================== B D Fugu ========================================================== B D Medaka ========================================================== B D Atlantic cod ========================================================== B D Nile tilapia ========================================================== B D X. tropicalis ========================================================== B D Platypus ========================================================== B D Turkey ========================================================== B D Coelacanth ========================================================== B D Lizard ========================================================== B D Budgerigar ========================================================== B D Zebra finch ========================================================== B D Chicken ========================================================== B D Painted turtle ========================================================== B D Mouse lemur ========================================================== Inserts between block 12 and 13 in window B D Human 15bp B D Chimp 15bp B D Gorilla 15bp B D Orangutan 15bp B D Gibbon 15bp B D Rhesus 15bp B D Baboon 15bp B D Marmoset 15bp B D Squirrel monkey 15bp B D Tarsier 15bp B D Bushbaby 15bp B D Tree shrew 15bp B D Pig 15bp B D Alpaca 15bp B D Dolphin 16bp B D Cow 15bp B D Cat 15bp B D Dog 15bp B D Panda 15bp B D Horse 15bp D Little brown bat 15bp B D Megabat 15bp B D Hedgehog 15bp B D Shrew 16bp B D Elephant 15bp B D Rock hyrax 15bp B D Tenrec 15bp B D Manatee 15bp B D Armadillo 15bp B D Sloth 15bp Alignment block 13 of 732 in window, 56699098 - 56699161, 64 bps B D Mouse tctgt--------atttccttt-------------aagaacagagag------------------tttgg B D Rat tctgt--------atctccttt-------------aagaacagaaag------------------attgg B D Kangaroo rat actgt-------aattttctttgcttctc---c--aagaacagagaa------------------ggtaa B D Naked mole-rat actgttctatgtaattttccttacatctccatc--aagaacaggaaa------------------ggtaa B D Guinea pig actgtactatgtaggtttccttacatctccagc--aagaaaagaaaa------------------ggtaa B D Squirrel actat-----ataattttctttgcatctccatc--aagaaataaaag------------------ggtaa B D Rabbit aacac-----ataattttctttgcttttctatc--aagaacagagag------------------gataa B D Human -------------------tttgcatctccacc--aagaacagaaag------------------aataa B D Chimp -------------------tttgcatctccacc--aagaacagaaag------------------aataa B D Gorilla -------------------tttgcatctccacc--aagaacagaaag------------------aataa B D Orangutan -------------------tttgcatctccacc--aagaacagaaag------------------aataa B D Gibbon -------------------tttgcatctccacc--aagaacagaaag------------------aataa B D Rhesus -------------------tttgcatctccacc--aagaacagaaag------------------aataa B D Baboon -------------------tttgcatctccacc--aagaacagaaag------------------aataa B D Marmoset -------------------tttgcatctccaac--aagaacagaaag------------------aataa B D Squirrel monkey -------------------tttgcatctccaac--aagaacaga---------------------aataa B D Tarsier -------------------tttgcatcttcatc--aagttcaggaag------------------aataa B D Mouse lemur -------------------tttgcatctccatc--aagaacagaaag------------------gataa B D Bushbaby -------------------tttccatcttcatt--aagaagagaaag------------------ggcaa B D Tree shrew -------------------tttgtgtctttatg--aagaacagaaag------------------ggtaa B D Pig -------------------tttgcatctctgct--aagaacataaag------------------gagag B D Alpaca -------------------tctgcatctctatt--gagaacataaag------------------gataa B D Dolphin -------------------tttgcatctctatt--aaaaacataaag------------------gatag B D Cow -------------------tttgcgtctctata--aagagaataaag------------------gatag B D Cat -------------------tttgtttctctatt--aagaacataaag------------------gataa B D Dog -------------------tttatatctctattaaaaaaacataaag------------------gataa B D Panda -------------------tttgtatctccatt--aagaacataaag------------------gataa B D Horse -------------------ttcgcatctctgtt--aagaacataaag------------------gataa D Little brown bat -------------------tttgcatctctatt--aaaaacacaaaggagtaaaaaaaaaaataagataa B D Megabat -------------------tttgcatctctagc--aagaacataaag------------------gataa B D Hedgehog -------------------ttttcatttgtgtt--aggaatggaaag------------------aataa B D Shrew -------------------tttgcatct-tatt--aaggacaataag------------------gaaa- B D Elephant -------------------tttgcatctccatt--aagaacagaaag------------------gataa B D Rock hyrax -------------------tttgcatttccatt--aaagacagaaaaac----------------agtaa B D Tenrec -------------------tttgcatctcc-tt--aagaactgaaag------------------ttcaa B D Manatee -------------------tttgaatctccatt--acgatcagaaag------------------gataa B D Armadillo -------------------tttgcatctccact--aagaacagaaag-------------------ataa B D Sloth -------------------tttgtatctctatt--aaca--gaaaag-------------------ataa B D Opossum ---------------------tgtatgttgatt--ggaaaccaaaag------------------aattc B D Tasmanian devil ---------------------tgattgtcaatt--agaaacaaaaaa------------------gattt B D Wallaby ====================================================================== B D Pika ====================================================================== B D Sheep ====================================================================== B D Stickleback ====================================================================== B D Tetraodon ====================================================================== B D Fugu ====================================================================== B D Medaka ====================================================================== B D Atlantic cod ====================================================================== B D Nile tilapia ====================================================================== B D X. tropicalis ====================================================================== B D Platypus ====================================================================== B D Turkey ====================================================================== B D Coelacanth ====================================================================== B D Lizard ====================================================================== B D Budgerigar ====================================================================== B D Zebra finch ====================================================================== B D Chicken ====================================================================== B D Painted turtle ====================================================================== Mouse cagatggctt-ggct----ttgctcttttttt-----tttaaa- Rat taga-----t-ggtt----ttgctccctttct-----t---aa- Kangaroo rat caga-----t-ggtt----atactccctttct-----t---aa- Naked mole-rat c--------t-tct-------actccttttct-----t---aa- Guinea pig c--------t-gttt----taactccttttct-----t---aa- Squirrel ctgg-----t-ggct----tccccccttttct-----t---aa- Rabbit ccta-----t-ggct----ttcttcccttcct-----t---aa- Human ctga-----t-ggca----ttacacc-----t-----t---aa- Chimp ctga-----t-ggca----ttacacc-----t-----t---aa- Gorilla ctga-----t-ggca----ttacacc-----t-----t---aa- Orangutan ctga-----t-ggca----ttacacc-----t-----t---aa- Gibbon ctga-----t-agca----ttacacc-----t-----t---aa- Rhesus caga-----a-agaa----aaaaat------------------- Baboon ctga-----t-ggca----ttacacc-----t-----t---aa- Marmoset ctga-----t-gaca----ttacacc-----t-----t---aa- Squirrel monkey ctga-----t-ggca----ttacacc-----t-----t---aa- Tarsier ctca-----t-ggta----tcacact-----g-----t---aa- Mouse lemur ctga-----t-ggct----ttactcc-tttct-----t---aa- Bushbaby ctga-----t-ttct----ttactccttttct-----t---aa- Tree shrew ctga-----tgggtt----ttactccttttct-----t---aa- Pig ctga-----t-ggct----ttacttcttttcc-----a---aa- Alpaca ctga-----t-ggct----ttccttcttttcc-----a---aa- Dolphin ctga-----c-ggct----ttacttcttttcc-----a---aa- Cow ttga-----c-agct----ttagctcttttcc-----a---aa- Cat ctga-----t-ggtt----ttactcc--tttc-----a---aa- Dog ctga-----c-agct----ttactcctttttc-----a---aa- Panda ctga-----c-agct----ttactccttttta-----a---aa- Horse ctga-----t-gattttacttactcctgtttc-----a---aa- Little brown bat ttga-----c-aact----ttactcttttttttaaaga---aa- Megabat ttga-----t-ggct----ttactactttttc-----a---aa- Hedgehog cgga-----c-gatt----ttactcctttttc-----a---aa- Shrew ---a-----t-tatt----ttactcctttttc-----a---aa- Elephant ctga-----t-ggct----tgactcctttttt-----a---aa- Rock hyrax ctaa-----t-ggct----ttactccttttct-----a---aa- Tenrec ctaa-----t-ggc-----------------c-----a---aa- Manatee tcga-----t-ggct----ttagtccttttct-----a---aa- Armadillo ctga-----atggct----ttactccttttct-----t---aa- Sloth ctga-----g-ggct----ttactccttttgt-----t---aa- Opossum ctga-----a-cctc----tagatcctttccc-----t---aaa Tasmanian devil gtaa-----a-cctt----tcgttcatcctcc-----t---aaa Wallaby ============================================ Pika ============================================ Sheep ============================================ Stickleback ============================================ Tetraodon ============================================ Fugu ============================================ Medaka ============================================ Atlantic cod ============================================ Nile tilapia ============================================ X. tropicalis ============================================ Platypus ============================================ Turkey ============================================ Coelacanth ============================================ Lizard ============================================ Budgerigar ============================================ Zebra finch ============================================ Chicken ============================================ Painted turtle ============================================ Inserts between block 13 and 14 in window B D Pig 1bp B D Alpaca 1bp B D Dolphin 1bp B D Cow 1bp B D Cat 1bp B D Dog 1bp B D Panda 2bp B D Horse 1bp D Little brown bat 1bp B D Megabat 1bp B D Hedgehog 1bp B D Shrew 1bp B D Opossum 9bp B D Tasmanian devil 9bp Alignment block 14 of 732 in window, 56699162 - 56699171, 10 bps B D Mouse tgttaaa-----ttc B D Rat cgttaaa-----ttc B D Kangaroo rat caccgaa-----ttc B D Naked mole-rat catttaa-----ttc B D Guinea pig cacttaa-----ttt B D Squirrel tacttga-----ttc B D Rabbit catttaa-----ttc B D Human cacttaa-----ttt B D Chimp cacctaa-----ttt B D Gorilla cacttaa-----ttt B D Orangutan cacttaa-----ttt B D Gibbon cacttaa-----ttt B D Rhesus aacttaa-----ttt B D Baboon cacttaa-----ttt B D Marmoset cacttaa-----ttc B D Squirrel monkey cacttaa-----ttc B D Tarsier cacttaa-----ttc B D Mouse lemur tatttaa-----ttc B D Bushbaby cacttca-----ttc B D Tree shrew tgcttaa-----ttc B D Pig tacgtaa-----ttc B D Alpaca tacttaa-----ttc B D Dolphin ----tac-----tta B D Sheep nncttaa-----ttc B D Cow cacttaa-----ttc B D Cat tacttaa-----ttc B D Dog cacttaa-----ttc B D Panda cacttaa-----ttg B D Horse cacttaa-----tcc D Little brown bat cacttag-----ttc B D Megabat cactcag-----ttc B D Hedgehog cacttga-----ttc B D Shrew caattaa-----ttt B D Elephant cacttaa-----tag B D Rock hyrax caatt---------g B D Tenrec cacttca-----ctc B D Manatee cacttaa-----ttg B D Armadillo cacttaa-----gtc B D Sloth cacttaa-----gtc B D Opossum tattaaaacgtcttt B D Tasmanian devil tattgaacatgtttt B D Wallaby =============== B D Pika =============== B D Stickleback =============== B D Tetraodon =============== B D Fugu =============== B D Medaka =============== B D Atlantic cod =============== B D Nile tilapia =============== B D X. tropicalis =============== B D Platypus =============== B D Turkey =============== B D Coelacanth =============== B D Lizard =============== B D Budgerigar =============== B D Zebra finch =============== B D Chicken =============== B D Painted turtle =============== Alignment block 15 of 732 in window, 56699172 - 56699173, 2 bps B D Mouse ta B D Rat ta B D Kangaroo rat ta B D Naked mole-rat ta B D Guinea pig ta B D Squirrel ta B D Rabbit ta B D Human ta B D Chimp ta B D Gorilla ta B D Orangutan ta B D Gibbon ta B D Rhesus ta B D Baboon ta B D Marmoset ta B D Squirrel monkey ta B D Tarsier ta B D Mouse lemur ta B D Bushbaby ta B D Tree shrew ca B D Pig ta B D Alpaca ta B D Dolphin ta B D Sheep ct B D Cow ca B D Cat ta B D Dog ta B D Panda ta B D Horse ta D Little brown bat ta B D Megabat tg B D Hedgehog ta B D Shrew ga B D Elephant ta B D Rock hyrax ta B D Tenrec ta B D Manatee ta B D Armadillo ca B D Sloth ta B D Opossum ca B D Tasmanian devil ta B D Zebrafish ta B D Wallaby == B D Pika == B D Stickleback == B D Tetraodon == B D Fugu == B D Medaka == B D Atlantic cod == B D Nile tilapia == B D X. tropicalis == B D Platypus == B D Turkey == B D Coelacanth == B D Lizard == B D Budgerigar == B D Zebra finch == B D Chicken == B D Painted turtle == Inserts between block 15 and 16 in window B D Shrew 63bp Alignment block 16 of 732 in window, 56699174 - 56699200, 27 bps B D Mouse ctttcattttcttaa----catttt----atttca- B D Rat ctttcattttcttta----cacttt----atttca- B D Kangaroo rat tgtttattgccttca----cctttt----attttt- B D Naked mole-rat ctttcattttcttaa----catttt----atttaa- B D Guinea pig cttccattttcttaa----catttt----atttaa- B D Squirrel ctttcatt--------------ttt----atttca- B D Rabbit ctttcgttttgttaa----ccttgt----attcaa- B D Human ctttcattttcttaa----cct-------atttca- B D Chimp ctttcattttcttaa----cct-------atttca- B D Gorilla ctttcattttcttaa----cct-------atttca- B D Orangutan ctttcattttcttaa----cct-------atttca- B D Gibbon ctttcattttcttaa----cct-------atttca- B D Rhesus ctttcattttcttaa----cct-------atttca- B D Baboon ctttcattttcttaa----cct-------atttca- B D Marmoset ctttcattttcttaa----ccg-------atttca- B D Squirrel monkey ctttcattttcttaa----cct-------atttta- B D Tarsier ctttcattttcttaa----gcgtta----atttca- B D Mouse lemur ctttcattttcttaa----catttt----atttca- B D Bushbaby ctttcattttcttaa----cctttt----atttca- B D Tree shrew ctttcattttcttaa----catttt----atttca- B D Pig ctatcattttcttac----cctttt----attgca- B D Alpaca ctttcatttccttaa----cctttt----atttca- B D Dolphin ctttaattatcctaa----cctttt----gtttca- B D Sheep ctttaattttcctaa----cctttt----gtttca- B D Cow ctttaattttcctaa----cctttt----gtttca- B D Cat ccttcattttcttaa----cttttt----atttca- B D Dog ccttcattttcttaa-----ctttt----atttca- B D Panda ccttcatttccttaa----cctttt----atttca- B D Horse ctttcattttcttaa----tcgtct----gtttca- D Little brown bat ctttcattttcttaa----cctttt----atagca- B D Megabat ttttcattttcttaa----actttt----ata---- B D Hedgehog c-----tcctcttag----catttc----actt--- B D Elephant ttttctgtttcttaa----cctt------------- B D Rock hyrax ctttcagtttcttta----cctttt----ac----- B D Tenrec cttgcactggtttgc----actt------------- B D Manatee ctttcagtttctcaa----cctttt----at----- B D Armadillo ttttcagtttctcaa----tctatt-tccct----- B D Sloth ctttcgttttctcaa----tctatt-tcctt----- B D Opossum tttttattctcttcc----tctcgc----a------ B D Tasmanian devil tttctattctctttcccttccttgc----a------ B D Fugu -cctttttctcttta----tcgttt----gctctca B D Zebrafish ----------cttta----tcaattataaacttgta B D Wallaby ==================================== B D Pika ==================================== B D Stickleback ==================================== B D Tetraodon ==================================== B D Medaka ==================================== B D Atlantic cod ==================================== B D Nile tilapia ==================================== B D X. tropicalis ==================================== B D Platypus ==================================== B D Turkey ==================================== B D Coelacanth ==================================== B D Lizard ==================================== B D Budgerigar ==================================== B D Zebra finch ==================================== B D Chicken ==================================== B D Painted turtle ==================================== B D Shrew ==================================== Inserts between block 16 and 17 in window B D Hedgehog 9bp B D Opossum 4bp B D Tasmanian devil 4bp Alignment block 17 of 732 in window, 56699201 - 56699235, 35 bps B D Mouse -----ttttttc----------ttt-------------ct------------------------------ B D Rat -----ttttctc----------tat-------------ct------------------------------ B D Kangaroo rat -----ctctttt----------tta-------------ca------------------------------ B D Naked mole-rat -----ttttctc----------ctt-------------ct------------------------------ B D Guinea pig -----ttttctc----------ttc-------------ct------------------------------ B D Squirrel -----ttttctc----------tt---------------------------------------------- B D Rabbit -----ttctttt----------ta---------------a------------------------------ B D Human -----ttttctc----------ttt-------------ct----------------------------tg B D Chimp -----ttttctc----------ttt-------------ct----------------------------tg B D Gorilla -----ttttctc----------ttt-------------ct----------------------------tg B D Orangutan -----ttttctc----------ctt-------------ct----------------------------tg B D Gibbon -----ttttccc----------ttt-------------ct----------------------------tg B D Rhesus -----ttttctc----------ttt-------------ct----------------------------tg B D Baboon -----ttttctc----------ttt-------------ct----------------------------tg B D Marmoset -----ttttctc----------ttt-------------cttgtatatatatatatacaaatatatatata B D Squirrel monkey -----ttttctt----------tct-------------------------------------------tg B D Tarsier -----ttttctc----------ttt-------------tt----------------------------cg B D Mouse lemur -----ttttctc----------ttt-------------ct----------------------------tg B D Bushbaby -----ttttctc----------tgt-------------ct----------------------------tg B D Tree shrew -----cattttt----------ctt-------------gt----------------------------at B D Pig ---------------------------------------------------------------------- B D Alpaca ---------------------------------------------------------------------- B D Dolphin ---------------------------------------------------------------------- B D Sheep ---------------------------------------------------------------------- B D Cow ---------------------------------------------------------------------- B D Cat ---------------------------------------------------------------------- B D Dog ---------------------------------------------------------------------- B D Panda ---------------------------------------------------------------------- B D Horse ---------------------------------------------------------------------- D Little brown bat ---------------------------------------------------------------------- B D Megabat ---------------------------------------------------------------------- B D Elephant ---------tta----------ttt-------------ct----------------------------tg B D Rock hyrax -----ttcatta----------ttt-------------cc----------------------------tg B D Tenrec ---------tta----------ttt-------------tc----------------------------ta B D Manatee -----ttcatta----------ttt-------------ct----------------------------tg B D Armadillo -----ttcttta----------ttt-------------ct----------------------------ca B D Sloth -----ttc--------------ttt-------------ct----------------------------ta B D Opossum -----cactctt----------tct-------------ca---------------------aaccctttc B D Tasmanian devil -----cattctt----------ttt-------------ct---------------------aacattttc B D Fugu ct-cactctttctaatca----tttgtgggccgcgactct------------------------------ B D Zebrafish ttgtattctttcagatagatatcttaaaaaccacaatatt------------------------------ B D Wallaby ====================================================================== B D Pika ====================================================================== B D Stickleback ====================================================================== B D Tetraodon ====================================================================== B D Medaka ====================================================================== B D Atlantic cod ====================================================================== B D Nile tilapia ====================================================================== B D X. tropicalis ====================================================================== B D Platypus ====================================================================== B D Turkey ====================================================================== B D Coelacanth ====================================================================== B D Lizard ====================================================================== B D Budgerigar ====================================================================== B D Zebra finch ====================================================================== B D Chicken ====================================================================== B D Painted turtle ====================================================================== B D Shrew ====================================================================== B D Hedgehog ====================================================================== Mouse --ga-----------tgtttt--------------aaaaaaa------a-c-----catt--ct Rat --ga-----------tgccta--------------aaaaaaag-----a-a-----catt--ct Kangaroo rat --aa-------aaactgtctc--------------agtaacggt----g-c-----ca----ct Naked mole-rat --ta-----------ggctt---------------aaaaaaa------c-c-----tttt--tc Guinea pig --tg-----------tcctta--------------aaaaaaa------a-c-----atct--cc Squirrel ---a-----------tactt---------------aaaaaaa------a-a-----cact--gt Rabbit --aa-----------accctc--------------tataaac------c-c-----catt--c- Human tata-----------tacatt--------------ttttaaa------c-t-----cttt--ca Chimp tata-----------tatatt--------------ttttaaa------c-t-----cttt--ca Gorilla tata-----------tatata--------------ttttaaa------c-t-----cttt--ca Orangutan tata-----------tatata--------------ttttaaa------c-t-----cttt--ca Gibbon tata-----------cgtata--------------ttttaaa------c-t-----cttt--ca Rhesus tata-----------tacata--------------tttgaaa------ctt-----tttt--ca Baboon tata-----------tacata--------------tttgaaa------ctt-----tttt--ca Marmoset tata-----------tatata--------------tttaaaa------c-t-----cttt--ta Squirrel monkey tata-----------tatata--------------ttttaaa------c-t-----cttt--ta Tarsier tatg-----------cat-tt--------------ttaaaag------c-c-----ctgt--ct Mouse lemur tata-----------tatttt--------------tttaaaa------g-c-----ccct---- Bushbaby tata-----------tg--tt--------------tttaaaa------c-t-----ctta---- Tree shrew taaa-----------aaaaaa--------------gaatgac------c-t-----ctct--c- Pig ----------------------------------------------------------tt--ga Alpaca ----------------------------------------------------------tt--ga Dolphin ----------------------------------------------------------tt--ga Sheep ----------------------------------------------------------tt--ga Cow ----------------------------------------------------------tt--ga Cat ----------------------------------------------------------ttaaaa Dog ----------------------------------------------------------tt--aa Panda ----------------------------------------------------------tt--ga Horse ----------------------------------------------------------tt--aa Little brown bat ----------------------------------------------------------tt--aa Megabat -----------------------------------------------------------t--aa Elephant tatt-----------aaaaaa--------------aaaaaaa------c-c-----ct------ Rock hyrax tatt--------------------------------aaaaaa------c-t-----cc------ Tenrec tatgtgtcggatttgaaaacagcagaagcagtagcaacaaaa------c-ccttctct------ Manatee catt---------taaaaaaa-----------aaaaaaaaaa------c-c-----ct------ Armadillo tatt-----------aaa------------aaagcaaaacac------c-t-----ct------ Sloth tatt-----------aaaaaa---aaaaacaaaacaaaacacaaacctc-t-----ct------ Opossum tata-----------aagcc-------------------------------------------- Tasmanian devil tata-----------aagcc-------------------------------------------- Fugu ---------------------------------------------------------------- Zebrafish ---------------------------------------------------------------- Wallaby ================================================================ Pika ================================================================ Stickleback ================================================================ Tetraodon ================================================================ Medaka ================================================================ Atlantic cod ================================================================ Nile tilapia ================================================================ X. tropicalis ================================================================ Platypus ================================================================ Turkey ================================================================ Coelacanth ================================================================ Lizard ================================================================ Budgerigar ================================================================ Zebra finch ================================================================ Chicken ================================================================ Painted turtle ================================================================ Shrew ================================================================ Hedgehog ================================================================ Inserts between block 17 and 18 in window B D Pig 12bp B D Alpaca 12bp B D Dolphin 11bp B D Sheep 11bp B D Cow 11bp B D Cat 23bp B D Dog 21bp B D Panda 23bp B D Horse 24bp D Little brown bat 23bp B D Megabat 19bp Alignment block 18 of 732 in window, 56699236 - 56699239, 4 bps B D Mouse tt--------------------at B D Rat tt--------------------ac B D Kangaroo rat tc--------------------a- B D Naked mole-rat at--------------------at B D Guinea pig at--------------------aa B D Squirrel ct--------------------at B D Human gg--------------------aa B D Chimp gg--------------------aa B D Gorilla gg--------------------aa B D Orangutan gg--------------------aa B D Gibbon gg--------------------aa B D Rhesus gg--------------------aa B D Baboon gg--------------------aa B D Marmoset gg--------------------at B D Squirrel monkey gg--------------------gt B D Tarsier ct--------------------at B D Mouse lemur ----------------------at B D Bushbaby ----------------------ac B D Tree shrew -----------------------t B D Pig at--------------------at B D Alpaca -t--------------------ac B D Dolphin -t--------------------at B D Sheep -t--------------------at B D Cow -t--------------------at B D Cat ct--------------------at B D Dog ct--------------------ac B D Panda ct--------------------at B D Horse ct--------------------ct D Little brown bat ctac------------------at B D Megabat ct--------------------at B D Hedgehog tc--------------------at B D Shrew tt--------------------ag B D Elephant ct--------------------gt B D Rock hyrax at--------------------gt B D Tenrec ct--------------------tt B D Manatee tt--------------------gt B D Armadillo ct--------------------at B D Sloth ct--------------------at B D Opossum ---cagaattttagggtgatggac B D Tasmanian devil ---taggatttcagaatggtaaac B D Fugu tc--------------------ag B D Zebrafish tt--------------------at B D Rabbit ------------------------ B D Wallaby ======================== B D Pika ======================== B D Stickleback ======================== B D Tetraodon ======================== B D Medaka ======================== B D Atlantic cod ======================== B D Nile tilapia ======================== B D X. tropicalis ======================== B D Platypus ======================== B D Turkey ======================== B D Coelacanth ======================== B D Lizard ======================== B D Budgerigar ======================== B D Zebra finch ======================== B D Chicken ======================== B D Painted turtle ======================== Inserts between block 18 and 19 in window B D Fugu 9bp Alignment block 19 of 732 in window, 56699240 - 56699271, 32 bps B D Mouse --------aattctacc-attaac----aatta-cggtatttccag--------- B D Rat --------aattccacc-gttgac----aatcg-cggtatttccag--------- B D Kangaroo rat --------aattcattc-attgac----attta-caata-----ac--------- B D Naked mole-rat --------ga-cctgcc-attgac----actca-tggaatttacaa--------- B D Guinea pig --------gaccctgcc-attgcc----gctca-tggtattcacag--------- B D Squirrel --------atttctgcc-actggc----actaa-tgctatttacag--------- B D Rabbit ---------------ct-actgat----acttg-tggcattcacag--------- B D Human --------aaccctgcc-actaac----accca-tggcatgtatag--------- B D Chimp --------aaccctgcc-actaac----accca-tggcatgtatag--------- B D Gorilla --------aaccctgcc-actaac----accca-tggcatatatag--------- B D Orangutan --------aaccctgcc-actaac----accca-tggcatgtatag--------- B D Gibbon --------aaccctgcc-actagc----accca-tggcatgtatag--------- B D Rhesus --------aaccctgcc-actaac----accca-tggcatgtatag--------- B D Baboon --------aaccttgcc-actaac----accca-tggcatgtatag--------- B D Marmoset --------aaccctgcc-actgac----accca-tgacatgtagag--------- B D Squirrel monkey --------aaccctgcc-actgac----accca-tgacatgtaga---------- B D Tarsier --------aaccctgcc-actgac----accca-tggcatgaataa--------- B D Mouse lemur --------aaccccg-c-actg------------tggcatagatag--------- B D Bushbaby --------aaccctgcc-agta------------tggaatacatag--------- B D Tree shrew --------aaccctgcc-actgct----actgg-aggcgtttatag--------- B D Pig --------aacctcatc-actaac----actgg-tggcatttacag--------- B D Alpaca --------gagtttacc-gctgac----actag-tggcatttacag--------- B D Dolphin --------aaccttacc-tctgac----actgg-tggcatttacag--------- B D Sheep --------gaccttacc-tctgac----actgg-tggcacttacag--------- B D Cow --------gaccttacc-tctgac----actgg-tggcacttacag--------- B D Cat --------aaccttacc-actgtc----actgg-cggcatttacag--------- B D Dog --------aaccttgcc-actgac----actggttggcatttactg--------- B D Panda --------aaccttacc-actgac----gctgg-tggcatttacag--------- B D Horse --------aaccttacc-actgac----atagg-tggcatttacag--------- D Little brown bat --------aaccttatc-actgac----acatg-tggcatttagag--------- B D Megabat --------aatcttacc-acgga--------------catttacaa--------- B D Hedgehog --------aacttcaca-agtgatactcattca-cggcatttt------------ B D Shrew --------ccttttacc-catgat----cttta-tggcattct-ac--------- B D Elephant --------atccctgcc-actgcc----atttg-tggggtttagag--------- B D Rock hyrax --------gaccctgccaactgcc----atttg-tg---------g--------- B D Tenrec --------aaccctgcc-actgct----gttgt-tgcggggcagag--------- B D Manatee --------aaccctgcc-gctgcg----atttg-cggcatttcgag--------- B D Armadillo --------aaccctgcc-actgac----acctg-tagcttttccag--------- B D Sloth --------aaccctgcc-aatgcc----actcg-tggcatttagag--------- B D Opossum --------aaattattc-attttc----ac------------------------- B D Tasmanian devil --------aacttattt-attatc----ac------------------------- B D Fugu aattgtctcgttcagtc-cctcag----ccttg-caataactgcaggatacaaga B D Wallaby ======================================================= B D Pika ======================================================= B D Stickleback ======================================================= B D Tetraodon ======================================================= B D Medaka ======================================================= B D Atlantic cod ======================================================= B D Nile tilapia ======================================================= B D X. tropicalis ======================================================= B D Platypus ======================================================= B D Turkey ======================================================= B D Coelacanth ======================================================= B D Lizard ======================================================= B D Budgerigar ======================================================= B D Zebra finch ======================================================= B D Chicken ======================================================= B D Painted turtle ======================================================= Inserts between block 19 and 20 in window B D Naked mole-rat 2bp B D Guinea pig 43bp B D Pig 1bp B D Alpaca 1bp B D Dolphin 1bp B D Sheep 1bp B D Cow 1bp B D Cat 1bp B D Dog 1bp B D Panda 1bp B D Horse 1bp D Little brown bat 1bp B D Megabat 1bp B D Hedgehog 1bp B D Shrew 1bp Alignment block 20 of 732 in window, 56699272 - 56699282, 11 bps B D Mouse aatta--------------------------ctatt-----------t B D Rat acttag-------------------------ttatt-----------t B D Kangaroo rat aatcag-------a-----------------ggact-----------a B D Naked mole-rat -------------a----------------ttttct-----------t B D Squirrel tgtcagcgacagaa----------------tttatt-----------t B D Rabbit ------tggcaataacgta-----tttttttttttt-----------t B D Human --------------------------------tggt------------ B D Chimp --------------------------------tggt------------ B D Gorilla --------------------------------tggt------------ B D Orangutan --------------------------------tggt------------ B D Gibbon --------------------------------tggt------------ B D Rhesus --------------------------------tggc------------ B D Baboon --------------------------------tggc------------ B D Marmoset --------------------------------tggt------------ B D Squirrel monkey ----------------------------------gt------------ B D Tarsier --------------------------------tggt------------ B D Mouse lemur --------------------------------tgtt------------ B D Bushbaby --------------------------------tgtt------------ B D Tree shrew --------------------------------tggtaattgcagttt- B D Pig --------------------------ggtaattgt------------- B D Alpaca --------------------------ggtaactgt------------- B D Dolphin --------------------------gataactgt------------- B D Sheep --------------------------ggtaattgt------------- B D Cow --------------------------ggtaactgt------------- B D Cat --------------------------ggtaattgt------------- B D Dog --------------------------ggtaactgt------------- B D Panda --------------------------ggcaattgt------------- B D Horse --------------------------ggtaactgt------------- D Little brown bat --------------------------ggtaattat------------- B D Megabat --------------------------agtaactgt------------- B D Hedgehog --------------------------gggtgt---------------- B D Shrew --------------------------ggtaac---------------- B D Elephant -------------------------tggtaattgta------------ B D Rock hyrax -------------------------tgataattgca------------ B D Tenrec -------------------------tggtggcggtg------------ B D Manatee -------------------------tggtaattgta------------ B D Armadillo -------------------------tggcaattgtt------------ B D Sloth -------------------------tggcacctgta------------ B D Opossum ------------------aattccttattttct--------------- B D Tasmanian devil ------------------agtccctcacttttt--------------- B D Fugu ----------------------gctcacagtct--------------- B D Guinea pig ================================================ B D Wallaby ================================================ B D Pika ================================================ B D Stickleback ================================================ B D Tetraodon ================================================ B D Medaka ================================================ B D Atlantic cod ================================================ B D Nile tilapia ================================================ B D X. tropicalis ================================================ B D Platypus ================================================ B D Turkey ================================================ B D Coelacanth ================================================ B D Lizard ================================================ B D Budgerigar ================================================ B D Zebra finch ================================================ B D Chicken ================================================ B D Painted turtle ================================================ Inserts between block 20 and 21 in window B D Human 17bp B D Chimp 17bp B D Gorilla 17bp B D Orangutan 17bp B D Gibbon 16bp B D Rhesus 18bp B D Baboon 18bp B D Marmoset 11bp B D Squirrel monkey 11bp B D Tarsier 17bp B D Mouse lemur 18bp B D Bushbaby 18bp B D Tree shrew 39bp B D Opossum 1bp B D Tasmanian devil 1bp Alignment block 21 of 732 in window, 56699283 - 56699302, 20 bps B D Mouse aaaaa----------------------caatatgcatat--------------------------aa--- B D Rat aaaaa----------------------gaataggcatat--------------------------ac--- B D Kangaroo rat aaaaa----------------------taatgttcacag--------------------------aa--- B D Naked mole-rat tttag----------------------tcacatacacat--------------------------ag--- B D Squirrel ctgag----------------------tcatacacatat--------------------------aa--- B D Rabbit ttgag----------------------tcagaggcacaa--------------------------aa--- B D Human ttaag----------------------tcatatgcacat--------------------------at--- B D Chimp ttaag----------------------tcatatgcacat--------------------------at--- B D Gorilla ttaag----------------------tcatatgcacat--------------------------at--- B D Orangutan ttaag----------------------ttatatgcacat--------------------------at--- B D Gibbon --------------------------------------t--------------------------at--- B D Rhesus ttaag----------------------tcatatgcacat--------------------------at--- B D Baboon ttaag----------------------tcgtatgcacat--------------------------at--- B D Marmoset ttaag----------------------tcatatgcactt--------------------------at--- B D Squirrel monkey ttaag----------------------tcatatacactt--------------------------ct--- B D Tarsier tt--g----------------------tcacgtgcacat--------------------------atcag B D Mouse lemur ttgag----------------------tcatatgtacat-----------------------aacat--- B D Bushbaby ttgaa----------------------tcatatgtaggt-----------------------gacac--- B D Pig ----------------------------agtatttattt--ttcgagtcatatgcacataac-------- B D Alpaca ----------------------------agtatgtattt------------------------------- B D Dolphin ----------------------------agtatttattt-tttaagtcattatgcacataac-------- B D Sheep ----------------------------actgtttgttta------------------------------ B D Cow ----------------------------actatttgttt------------------------------- B D Cat ----------------------------aatatttattt------------------------------- B D Dog ----------------------------agtctttattt------------------------------- B D Panda ----------------------------agtatttattt------------------------------- B D Horse ----------------------------agtatttgttt------------------------------- D Little brown bat ----------------------------agtattta-tt------------------------------- B D Megabat ----------------------------agtatttgttt------------------------------- B D Hedgehog ------------------------------tacttattt------------------------------- B D Shrew ------------------------------tatttatct------------------------------- B D Elephant -----------------------------aaatttattt------------------------------- B D Rock hyrax -----------------------------caattt-ctt------------------------------- B D Tenrec -----------------------------aaatgcattt------------------------------- B D Manatee -----------------------------atacttattt------------------------------- B D Armadillo -----------------------------gggtttattt------------------------------- B D Sloth -----------------------------ggatttactt------------------------------- B D Opossum ataaatacttctactat----------tcatatccgata------------------------------- B D Tasmanian devil ataagtacttctactgt----------tcatatctaata------------------------------- B D Fugu ------aatactgataccacagcaatatactatata---------------------------------- B D Guinea pig ====================================================================== B D Wallaby ====================================================================== B D Pika ====================================================================== B D Tree shrew ====================================================================== B D Stickleback ====================================================================== B D Tetraodon ====================================================================== B D Medaka ====================================================================== B D Atlantic cod ====================================================================== B D Nile tilapia ====================================================================== B D X. tropicalis ====================================================================== B D Platypus ====================================================================== B D Turkey ====================================================================== B D Coelacanth ====================================================================== B D Lizard ====================================================================== B D Budgerigar ====================================================================== B D Zebra finch ====================================================================== B D Chicken ====================================================================== B D Painted turtle ====================================================================== Mouse c Rat c Kangaroo rat c Naked mole-rat c Squirrel c Rabbit c Human c Chimp c Gorilla c Orangutan c Gibbon c Rhesus c Baboon c Marmoset c Squirrel monkey c Tarsier c Mouse lemur c Bushbaby t Pig - Alpaca - Dolphin - Sheep - Cow - Cat - Dog - Panda - Horse - Little brown bat - Megabat - Hedgehog - Shrew - Elephant - Rock hyrax - Tenrec - Manatee - Armadillo - Sloth - Opossum - Tasmanian devil - Fugu - Guinea pig = Wallaby = Pika = Tree shrew = Stickleback = Tetraodon = Medaka = Atlantic cod = Nile tilapia = X. tropicalis = Platypus = Turkey = Coelacanth = Lizard = Budgerigar = Zebra finch = Chicken = Painted turtle = Inserts between block 21 and 22 in window B D Human 1bp B D Chimp 1bp B D Gorilla 1bp B D Orangutan 1bp B D Gibbon 1bp B D Rhesus 1bp B D Baboon 1bp B D Marmoset 1bp B D Squirrel monkey 1bp B D Tarsier 1bp B D Mouse lemur 1bp B D Bushbaby 1bp B D Pig 7bp B D Alpaca 7bp B D Sheep 6bp B D Cow 6bp B D Cat 7bp B D Dog 7bp B D Panda 7bp B D Horse 7bp D Little brown bat 7bp B D Megabat 7bp B D Hedgehog 7bp B D Shrew 7bp B D Elephant 7bp B D Rock hyrax 7bp B D Tenrec 7bp B D Manatee 7bp B D Armadillo 7bp B D Sloth 7bp B D Opossum 9bp B D Tasmanian devil 9bp Alignment block 22 of 732 in window, 56699303 - 56699313, 11 bps B D Mouse tctaaattata------- B D Rat ctta-------------- B D Kangaroo rat tttc-------------- B D Naked mole-rat ctca-------------- B D Squirrel ctca-------------- B D Rabbit caca-------------- B D Human cata-------------- B D Chimp cata-------------- B D Gorilla cata-------------- B D Orangutan cata-------------- B D Gibbon cata-------------- B D Rhesus catg-------------- B D Baboon catg-------------- B D Marmoset cata-------------- B D Squirrel monkey cata-------------- B D Tarsier cata-------------- B D Mouse lemur cata-------------- B D Bushbaby caac-------------- B D Alpaca catg-------------- B D Sheep cata-------------- B D Cow cata-------------- B D Cat cata-------------- B D Dog tatg-------------- B D Panda tata-------------- B D Horse cata-------------- D Little brown bat cata-------------- B D Megabat cata-------------- B D Hedgehog caca-------------- B D Shrew cata-------------- B D Elephant tata-------------- B D Rock hyrax taca-------------- B D Tenrec ctta-------------- B D Manatee taca-------------- B D Armadillo cata-------------- B D Sloth cata-------------- B D Opossum ca---------------- B D Tasmanian devil ca---------------- B D Fugu tata-------tatcgtg B D Guinea pig ================== B D Pig ================== B D Wallaby ================== B D Pika ================== B D Tree shrew ================== B D Stickleback ================== B D Tetraodon ================== B D Medaka ================== B D Atlantic cod ================== B D Nile tilapia ================== B D X. tropicalis ================== B D Platypus ================== B D Turkey ================== B D Coelacanth ================== B D Lizard ================== B D Budgerigar ================== B D Zebra finch ================== B D Chicken ================== B D Painted turtle ================== B D Dolphin NNNNNNNNNNNNNNNNNN Inserts between block 22 and 23 in window B D Rock hyrax 82bp B D Manatee 22bp B D Armadillo 12bp B D Sloth 12bp Alignment block 23 of 732 in window, 56699314 - 56699318, 5 bps B D Mouse tgcat B D Elephant ----t B D Tenrec ----t B D Armadillo ----t B D Sloth ----t B D Opossum tacac B D Tasmanian devil caaac B D Fugu tgtgt B D Rabbit ----- B D Guinea pig ===== B D Bushbaby ----- B D Cow ----- B D Manatee ===== B D Squirrel ----- B D Rhesus ----- B D Orangutan ----- B D Squirrel monkey ----- B D Pig ===== B D Horse ----- B D Panda ----- B D Dog ----- B D Marmoset ----- B D Gibbon ----- B D Gorilla ----- B D Chimp ----- B D Naked mole-rat ----- B D Human ----- B D Tarsier ----- B D Wallaby ===== B D Pika ===== B D Alpaca ----- B D Tree shrew ===== B D Sheep ----- B D Stickleback ===== B D Tetraodon ===== B D Medaka ===== B D Atlantic cod ===== B D Nile tilapia ===== B D X. tropicalis ===== B D Platypus ===== B D Turkey ===== B D Coelacanth ===== B D Lizard ===== B D Budgerigar ===== B D Zebra finch ===== B D Chicken ===== B D Painted turtle ===== B D Shrew ----- D Little brown bat ----- B D Baboon ----- B D Cat ----- B D Mouse lemur ----- B D Hedgehog ----- B D Kangaroo rat ----- B D Rock hyrax ===== B D Megabat ----- B D Dolphin NNNNN B D Rat ----- Inserts between block 23 and 24 in window B D Elephant 118bp B D Tenrec 8bp B D Armadillo 9bp B D Sloth 9bp Alignment block 24 of 732 in window, 56699319 - 56699337, 19 bps B D Mouse atatat---------aaatatgcatata- B D Rat -------------------------ctt- B D Kangaroo rat -------------------------tag- B D Naked mole-rat -------------------------ctt- B D Squirrel -------------------------tat- B D Rabbit -------------------------cgg- B D Human -------------------------tgt- B D Chimp -------------------------tgt- B D Gorilla -------------------------tgt- B D Orangutan -------------------------cgt- B D Gibbon -------------------------tgt- B D Rhesus -------------------------tgt- B D Baboon -------------------------tgt- B D Marmoset -------------------------tgt- B D Squirrel monkey -------------------------tgt- B D Tarsier -------------------------ttt- B D Mouse lemur -------------------------ttt- B D Bushbaby -------------------------tta- B D Alpaca -------------------------tgc- B D Sheep -------------------------tgc- B D Cow -------------------------tgc- B D Cat -------------------------tgc- B D Dog -------------------------tgc- B D Panda -------------------------tgc- B D Horse -------------------------tgc- D Little brown bat -------------------------tgc- B D Megabat -------------------------tgc- B D Hedgehog ---------------------------c- B D Shrew -------------------------tgc- B D Manatee atg----------------------tgt- B D Armadillo atg----------------------tgt- B D Sloth atg----------------------tgt- B D Opossum ----attccggtaggtattcccaatcat- B D Tasmanian devil ----atctcgacattaccttccatctgt- B D Fugu ----------gtgtgtgtgtgtgtgtgtg B D Guinea pig ============================= B D Elephant ============================= B D Pig ============================= B D Tenrec ============================= B D Wallaby ============================= B D Pika ============================= B D Tree shrew ============================= B D Stickleback ============================= B D Tetraodon ============================= B D Medaka ============================= B D Atlantic cod ============================= B D Nile tilapia ============================= B D X. tropicalis ============================= B D Platypus ============================= B D Turkey ============================= B D Coelacanth ============================= B D Lizard ============================= B D Budgerigar ============================= B D Zebra finch ============================= B D Chicken ============================= B D Painted turtle ============================= B D Rock hyrax ============================= B D Dolphin NNNNNNNNNNNNNNNNNNNNNNNNNNNNN Inserts between block 24 and 25 in window B D Human 1bp B D Chimp 1bp B D Gorilla 1bp B D Orangutan 1bp B D Gibbon 1bp B D Rhesus 1bp B D Baboon 1bp B D Marmoset 1bp B D Squirrel monkey 1bp B D Tarsier 1bp B D Mouse lemur 1bp B D Bushbaby 1bp B D Alpaca 14bp B D Sheep 13bp B D Cow 13bp B D Cat 14bp B D Dog 14bp B D Panda 14bp B D Horse 14bp D Little brown bat 14bp B D Megabat 14bp B D Hedgehog 14bp B D Shrew 14bp B D Manatee 9bp B D Armadillo 4bp B D Sloth 4bp B D Opossum 5bp B D Tasmanian devil 3bp Alignment block 25 of 732 in window, 56699338 - 56699347, 10 bps B D Mouse atttagcagg---- B D Rat atttagcagg---- B D Kangaroo rat attta--------- B D Naked mole-rat atttaatgt----- B D Squirrel atttaatgtg---- B D Rabbit atttagtgtg---- B D Human atgt---------- B D Chimp atgt---------- B D Gorilla atgt---------- B D Orangutan atgt---------- B D Gibbon atgt---------- B D Rhesus atgt---------- B D Baboon atgt---------- B D Marmoset atgt---------- B D Squirrel monkey atgt---------- B D Tarsier acgt---------- B D Mouse lemur atgt---------- B D Bushbaby aggc---------- B D Tree shrew atgt---------- B D Pig atttaatgtg---- B D Alpaca atttcatgta---- B D Sheep atttaatgtg---- B D Cow atttaacgtg---- B D Cat atttaacgtg---- B D Dog atttaacgtg---- B D Panda atttaatgtg---- B D Horse atttagtgtg---- D Little brown bat atttaatgta---- B D Megabat atttaatgta---- B D Hedgehog atttaatacg---- B D Shrew acttattgta---- B D Tenrec accttacgta---- B D Manatee accctacggg---- B D Armadillo atatagc------- B D Sloth atatagc------- B D Opossum atgt---------- B D Tasmanian devil at-t---------- B D Fugu ----tgtgtgtgtg B D Guinea pig ============== B D Elephant ============== B D Wallaby ============== B D Pika ============== B D Stickleback ============== B D Tetraodon ============== B D Medaka ============== B D Atlantic cod ============== B D Nile tilapia ============== B D X. tropicalis ============== B D Platypus ============== B D Turkey ============== B D Coelacanth ============== B D Lizard ============== B D Budgerigar ============== B D Zebra finch ============== B D Chicken ============== B D Painted turtle ============== B D Rock hyrax ============== B D Dolphin NNNNNNNNNNNNNN Inserts between block 25 and 26 in window B D Tenrec 8bp B D Manatee 34bp B D Opossum 1bp B D Tasmanian devil 1bp Alignment block 26 of 732 in window, 56699348 - 56699352, 5 bps B D Mouse --cagag B D Rat --cagtg B D Squirrel --tacag B D Rabbit --tggag B D Pig --cagag B D Alpaca --tagag B D Sheep --tagag B D Cow --tagag B D Cat --tagac B D Dog --tagac B D Panda --tagac B D Horse --tagag D Little brown bat --tagag B D Megabat --tagag B D Hedgehog --tagag B D Shrew --tggag B D Opossum --ta--- B D Tasmanian devil --ta--- B D Fugu tgtg--- B D Guinea pig ======= B D Bushbaby ------- B D Elephant ======= B D Manatee ======= B D Rhesus ------- B D Orangutan ------- B D Squirrel monkey ------- B D Marmoset ------- B D Gibbon ------- B D Gorilla ------- B D Chimp ------- B D Naked mole-rat ------- B D Human ------- B D Tarsier ------- B D Tenrec ======= B D Wallaby ======= B D Pika ======= B D Tree shrew ------- B D Stickleback ======= B D Tetraodon ======= B D Medaka ======= B D Atlantic cod ======= B D Nile tilapia ======= B D X. tropicalis ======= B D Platypus ======= B D Turkey ======= B D Coelacanth ======= B D Lizard ======= B D Budgerigar ======= B D Zebra finch ======= B D Chicken ======= B D Painted turtle ======= B D Baboon ------- B D Sloth ------- B D Armadillo ------- B D Mouse lemur ------- B D Kangaroo rat ------- B D Rock hyrax ======= B D Dolphin NNNNNNN Inserts between block 26 and 27 in window B D Rabbit 2bp Alignment block 27 of 732 in window, 56699353 - 56699385, 33 bps B D Mouse gcagaagcaga----gaaa-gtaaggaagtc---------ctgtagg B D Rat gc--------------gat-gtagggtagtc---------ctgaatc B D Kangaroo rat -c--------------tgt-gcggggaagtc---------ttgtgtg B D Naked mole-rat gtagaggcaga----gcat-gcaaggtagac---------ccaggca B D Guinea pig gtagaggcaaa----gctt-gcagagtagac---------ctaggca B D Squirrel --------aga----gcacagaagaatagtc---------ccttgct B D Rabbit --------gga----gcat--cagggtagtc---------ctatgta B D Human gtagaggtagt----gtat-caaggggagcc---------ctatgca B D Chimp gtagaggtagt----gtat-caaggggagcc---------ctatgca B D Gorilla gtagaggtaga----gtat-caaggggagcc---------ctatgca B D Orangutan gtagagataga----gtat-caaggggaacc---------ctatgca B D Gibbon gtagaggtaga----gtat-caaggggagcc---------ctatgca B D Rhesus gtagaggtaga----gtat-caaggggagcc---------ctatgca B D Baboon gtagaggtaga----gtat-caaggggagcc---------ctatgca B D Marmoset gtagaggtaga----gtat-caaggggagcc---------ctatgca B D Squirrel monkey ---gaggtaga----gtat-caaggggagtc---------ctatgca B D Tarsier gtagccacaga----gaac-ccaggggggtc---------ccttgca B D Mouse lemur gtagagctagg----gta--tcaggctagtc-----------ttctg B D Bushbaby agagagctagg----gtac-ccaggctaggc-----------aggca B D Tree shrew gctgagataca----gcag-caagggcagtc---------c------ B D Pig ------atgga----gcat-caagggtagt--cacacacggtagacg B D Alpaca ------acaga----gcac-ccaaggcaag----------gtaggcg B D Sheep ------ataga----gcac-gaagggtagtcacacacaaggtaggca B D Cow ------ataga----gcgc-ggagggtagt---------------ca B D Cat ------ataga----gcat-caagggtagtcacacacaagttaggca B D Dog ------ataga----gcat-taagggcagtcacatatgaattacgca B D Panda ------ataga----gcat-caagggtcatcacaaat-aattttgca B D Horse ------ataga----gcat-caagggtt-tgacccacacagtacaca D Little brown bat ------agagatagggaat-ccaggttggtcaca------------- B D Megabat ------aga------gcat-tgaggttggtcacacacaagatatgca B D Hedgehog ------ctcaa----gtat-caagggtagtcacacaggggttatgta B D Shrew ------ct--a----gtag-caagg----------------tatgta B D Rock hyrax ----------------------------------------ttgagtc B D Tenrec --------------------------------------------gtc B D Manatee ----------------------------------------ttgagtc B D Armadillo --------------------------------------------atc B D Sloth --------------------------------------------atc B D Opossum actgtatcaga----caat-cta------------------------ B D Tasmanian devil acagtatcaga----aagt-ccagatcaggcg--------------- B D Fugu gtgataccagt----ggat-gtgtgtatatt---------ttatagg B D Elephant =============================================== B D Wallaby =============================================== B D Pika =============================================== B D Stickleback =============================================== B D Tetraodon =============================================== B D Medaka =============================================== B D Atlantic cod =============================================== B D Nile tilapia =============================================== B D X. tropicalis =============================================== B D Platypus =============================================== B D Turkey =============================================== B D Coelacanth =============================================== B D Lizard =============================================== B D Budgerigar =============================================== B D Zebra finch =============================================== B D Chicken =============================================== B D Painted turtle =============================================== B D Dolphin NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN Inserts between block 27 and 28 in window B D Rock hyrax 31bp B D Tenrec 7bp B D Manatee 31bp B D Armadillo 16bp B D Sloth 17bp Alignment block 28 of 732 in window, 56699386 - 56699386, 1 bps B D Mouse c B D Rat c B D Kangaroo rat c B D Naked mole-rat c B D Guinea pig c B D Squirrel c B D Rabbit c B D Human c B D Chimp c B D Gorilla c B D Orangutan c B D Gibbon c B D Rhesus c B D Baboon c B D Marmoset c B D Squirrel monkey c B D Tarsier c B D Mouse lemur c B D Bushbaby c B D Tree shrew c B D Pig c B D Alpaca c B D Sheep c B D Cow c B D Cat c B D Dog c B D Panda c B D Horse t B D Megabat c B D Hedgehog c B D Shrew c B D Elephant t B D Rock hyrax c B D Tenrec t B D Manatee t B D Armadillo c B D Sloth t B D Tasmanian devil t B D Fugu c B D Wallaby = B D Pika = B D Stickleback = B D Tetraodon = B D Medaka = B D Atlantic cod = B D Nile tilapia = B D X. tropicalis = B D Platypus = B D Turkey = B D Coelacanth = B D Opossum - B D Lizard = B D Budgerigar = B D Zebra finch = B D Chicken = B D Painted turtle = D Little brown bat - B D Dolphin N Alignment block 29 of 732 in window, 56699387 - 56699393, 7 bps B D Mouse acacaac B D Rat atacaat B D Kangaroo rat aaacaaa B D Naked mole-rat acataaa B D Guinea pig acacaag B D Squirrel aaacaag B D Rabbit acacaag B D Human acacaaa B D Chimp acacaaa B D Gorilla acacaaa B D Orangutan acacaaa B D Gibbon acacaaa B D Rhesus gcacaaa B D Baboon gcacaaa B D Marmoset atacaaa B D Squirrel monkey atacaaa B D Tarsier acacaaa B D Mouse lemur acacaaa B D Bushbaby cctcaaa B D Tree shrew ccacaag B D Pig acacagg B D Alpaca acaca-- B D Sheep acac--- B D Cow acac--- B D Cat acacaag B D Dog acacaag B D Panda gcacaag B D Horse acacaag D Little brown bat --gcaag B D Megabat acacaag B D Hedgehog acgcagg B D Shrew acacagg B D Elephant actctag B D Rock hyrax acccaag B D Tenrec accttct B D Manatee accttag B D Armadillo actcggg B D Sloth acccagg B D Tasmanian devil acata-- B D Wallaby ======= B D Pika ======= B D Stickleback ======= B D Tetraodon ======= B D Fugu ======= B D Medaka ======= B D Atlantic cod ======= B D Nile tilapia ======= B D X. tropicalis ======= B D Platypus ======= B D Turkey ======= B D Coelacanth ======= B D Opossum ------- B D Lizard ======= B D Budgerigar ======= B D Zebra finch ======= B D Chicken ======= B D Painted turtle ======= B D Dolphin NNNNNNN Inserts between block 29 and 30 in window B D Tasmanian devil 8bp Alignment block 30 of 732 in window, 56699394 - 56699412, 19 bps B D Mouse gtggg--aatctatgtactta-------- B D Rat gcggg--aatctgtgtactta-------- B D Kangaroo rat tcaga--gatctatgcacatg-------- B D Naked mole-rat gagga--aattcatacatgta-------- B D Guinea pig gcaga--gatccacgcatgta-------- B D Squirrel ttgga--aatct-------tg-------- B D Rabbit gtgga--aatctgtgcacata-------- B D Human gcaga--aatctgtgcatgta-------- B D Chimp gcaga--aatctgtgcatgta-------- B D Gorilla gcaga--aatctgtgcatgta-------- B D Orangutan gcaga--aatctgtgcacgta-------- B D Gibbon gcaga--aatctgtgcacata-------- B D Rhesus gcaga--aatctgtgcacgta-------- B D Baboon gcaga--aatctgtgcacgta-------- B D Marmoset gcaga--aatctgtgaacata-------- B D Squirrel monkey gcaga--aatctgtgaacgta-------- B D Tarsier gcag---aatctacgcatgta-------- B D Mouse lemur gcaga--aatctatgcacgta-------- B D Bushbaby acaga--aatctatgcacata-------- B D Tree shrew gcaga--cacccactccggtg-------- B D Pig aggcagaaacctacacaccta-------- B D Alpaca ----------ctaagcaccta-------- B D Sheep ----------ctatgcactca-------- B D Cow ----------ctatgcatttc-------- B D Cat acag---aaactatgcatgta-------- B D Dog ac-----aaactacgcatgtc-------- B D Panda ac-----aaactgtgcatgta-------- B D Horse gcaga-aaacctacgcactta-------- D Little brown bat gcaaa--aacctatgcacata-------- B D Megabat gcaga--atcctatgcacata-------- B D Hedgehog -cagg--aatctatgcaggta-------- B D Shrew acaga--agcctttgcaggga-------- B D Elephant gcaga--aacctatgcacgtg-------- B D Rock hyrax gcaga--aacctatgcacgtg-------- B D Tenrec gcaga--aaccgaagcaagca-------- B D Manatee gcaga--aacctatgcacgtg-------- B D Armadillo gcaaa--tacctaatcatata-------- B D Sloth acaga--aacctaatc--aca-------- B D Opossum ----------gtgggcactaatataatct B D Tasmanian devil ----------atgggcactcatatt--ca B D Wallaby ----------gtgggcactcatgtcaaca B D Pika ============================= B D Stickleback ============================= B D Tetraodon ============================= B D Fugu ============================= B D Medaka ============================= B D Atlantic cod ============================= B D Nile tilapia ============================= B D X. tropicalis ============================= B D Platypus ============================= B D Turkey ============================= B D Coelacanth ============================= B D Lizard ============================= B D Budgerigar ============================= B D Zebra finch ============================= B D Chicken ============================= B D Painted turtle ============================= B D Dolphin NNNNNNNNNNNNNNNNNNNNNNNNNNNNN Alignment block 31 of 732 in window, 56699413 - 56699429, 17 bps B D Mouse gattttgcatatgtatt B D Rat cattttgcataggtatt B D Kangaroo rat tattttgcaagtttatc B D Naked mole-rat tattttgcatgtgtact B D Guinea pig tattttgcacgtgtatt B D Squirrel cattttgcatgtgtatt B D Rabbit tattttgcatgtgtatt B D Pika gattttgcacgcgcatt B D Human tattttgcac-tgtatc B D Chimp tattttgcac-tgtatc B D Gorilla tattttgcac-tgtatc B D Orangutan tattttgcac-tgtatc B D Gibbon tattttgcac-tgtatc B D Rhesus tattttgcac-cgtatc B D Baboon tattttgcac-cgtatc B D Marmoset tcttttgcac-tgaatt B D Squirrel monkey tcttttgcac-tgcatt B D Tarsier tattctgcatgcgtatt B D Mouse lemur tattttgcatgtgtatt B D Bushbaby tattttgcatgtatatt B D Tree shrew tagtctgcatgtgtatt B D Pig tgttttgcat------- B D Alpaca tgttttgcatacatatt B D Sheep tgctttgcatgtatatt B D Cow tgctttgcatgtatatt B D Cat tattttgcatgtgcatt B D Dog tattttgcgtgtgtatt B D Panda tattttgcatgtgtatt B D Horse tatttagcatatgtatt D Little brown bat gactttgcatatgtatt B D Megabat tattttgcatgtgtatt B D Hedgehog tattgtgtgtgtatatt B D Shrew tagtttgcatgtgtatt B D Elephant tacttggcatgtgtatt B D Rock hyrax tacttagcgtgtgtatt B D Tenrec gactttgcatgtatatt B D Manatee tacttagcatgtgtatt B D Armadillo tattttgcatgtagatc B D Sloth tattttgcatgtatatt B D Opossum -gttctacatatgtata B D Tasmanian devil -attctaactatgcgtt B D Wallaby -attctaaacatgtata B D Stickleback ================= B D Tetraodon ================= B D Fugu ================= B D Medaka ================= B D Atlantic cod ================= B D Nile tilapia ================= B D X. tropicalis ================= B D Platypus ================= B D Turkey ================= B D Coelacanth ================= B D Lizard ================= B D Budgerigar ================= B D Zebra finch ================= B D Chicken ================= B D Painted turtle ================= B D Dolphin NNNNNNNNNNNNNNNNN Inserts between block 31 and 32 in window B D Sheep 422bp Alignment block 32 of 732 in window, 56699430 - 56699442, 13 bps B D Mouse gtg-----ggcatcactt B D Rat gtg-----ggcatcgctc B D Kangaroo rat aca-----cacatccctt B D Naked mole-rat gtg-----tgcatcattt B D Guinea pig gtg-----cacatcattt B D Squirrel gtg-----tgcatcattt B D Rabbit gtg-----ggcatcgttt B D Pika gtg-----ggcatccttg B D Human gtg-----ggaataattt B D Chimp gtg-----ggaatagttt B D Gorilla gtg-----ggaataattt B D Orangutan gtg-----ggaataattt B D Gibbon atg-----ggaataattt B D Rhesus gtg-----ggaataattt B D Baboon gtg-----ggaataattt B D Marmoset gtg-----ggaatcattt B D Squirrel monkey gtg-----ggaatcattt B D Tarsier gtg-----ggcatcgttt B D Mouse lemur gtg-----ggcatcatgt B D Bushbaby atg-----gacatcgttt B D Tree shrew acg-----ggcatcattt B D Pig gtg-----ggcatccttt B D Alpaca gtg-----ggcatctttt B D Cow gtg-----ggcatccttt B D Cat gtg-----gccatcacgt B D Dog gtg-----ggcatcatgc B D Panda gt------ggcatcttgt B D Horse gca-----ggcatcattt D Little brown bat gtg-----ggcagcattt B D Megabat gtg-----ggtagcattt B D Hedgehog gtg-----ggcatctttt B D Shrew gtgcatgtggcatcattt B D Elephant gta-----ggcaacgttt B D Rock hyrax gta-----ggcagcatct B D Tenrec gta-----ggcttcggtt B D Manatee gta-----ggcatcattt B D Armadillo gtg-----ggtatcattt B D Sloth gtg-----ggcatcattt B D Opossum att-----ca-------t B D Tasmanian devil att-----cttgttattt B D Wallaby att-----tctattattt B D Sheep ================== B D Stickleback ================== B D Tetraodon ================== B D Fugu ================== B D Medaka ================== B D Atlantic cod ================== B D Nile tilapia ================== B D X. tropicalis ================== B D Platypus ================== B D Turkey ================== B D Coelacanth ================== B D Lizard ================== B D Budgerigar ================== B D Zebra finch ================== B D Chicken ================== B D Painted turtle ================== B D Dolphin NNNNNNNNNNNNNNNNNN Alignment block 33 of 732 in window, 56699443 - 56699485, 43 bps B D Mouse agt--t-atttgtttgcaaaggacttt-gcggg-tc-ttttgttctgtc B D Rat agt--t-atttgtttgcaaaggacttt-gcggg-cc-ttttgttctgtc B D Kangaroo rat agt--t-atttgtttgcaaaggacttg-gcaggttc-ttctgccttatc B D Naked mole-rat agt--t-ctttgtttgcaaaggacttt-g-agg-tc-ttttgttccatc B D Squirrel agg--t-atttgtttgcaaaggacttt-gcagg-tc-tttcgccctatt B D Rabbit agt--t-atttgtttgcaaaggacttt-gcaga-t--ctttgttttgtt B D Pika ggc--t-a----tttgcaaaatatttt-gcagg-tc-ctttgttttgtc B D Human agt--t-atttgtttgcaaaggacagt-gcagg-tctttttgttct--c B D Chimp agt--t-atttgtttgcaaaggactgt-gcagg-tctttttgttct--c B D Gorilla agt--t-atttgtttgcaaaggactgt-gcagg-tctttttgttcg--c B D Orangutan agt--t-atttgtttgcaaaggacagt-gc-gg-tctttttgttct--c B D Gibbon agt--t-atttgtttgcaaaggactgt-gcagg-cctttttgttct--c B D Rhesus agt--t-atttgtttgcaaaggacttt-gcagg-tcgttttgttct--c B D Baboon agt--t-atttgtttgcaaaggacttt-gcagg-tctttttgttct--c B D Marmoset ag-------ttgtttgcaaaggacttt-gcagg-tcattttgttct--t B D Squirrel monkey agt--t-atttgtttgcaaaggacttt-gcagg-tctttttgttct--c B D Tarsier agt--t-acttgtttgcaaaggtcttt-gcaag-tcttcttg------- B D Mouse lemur agt--t-atttgtttgcaaaagactt------g-tc-ttttgttctaac B D Bushbaby agt--t-a--tgtttgcaaaagacttt-gcagg-tc-ttttgtt----c B D Tree shrew agt--t-acttgtttgcaaaggacttt-acagc-tc-ttttgttctgtc B D Pig agt--t-atttgtttgcaaaggacttt-gcagg-tc-ttttgtt-cgtc B D Alpaca agt--t-atttgtttgcaaagcacttt-gcagg-tc-ttttgttccatc B D Cow agt--c-atttgtttgcaaaagacttt-acagg-tc-ttttgttccatc B D Cat agt--t-atttgcttgcaaaggacttt-gcagg-tc-ttttgtctcatc B D Dog agt--t-atttgtttgcaaaggacttt-gcagg-tc-tttggtc---tc B D Panda agt--t-atttgtttgcaaaggacttt-gcagg-tc-ttttgtctcatc B D Horse agt--taatttgtatg-aaaggactta-gcaag-tctttttgttccctc D Little brown bat tgt--c-g--tgtttgcaaagaacttt-gcagg-tc-ttttgttccatc B D Megabat agt--t-atttgtttgcaaagaatttt-gcagg-tc-ttttgttccatc B D Hedgehog agttct-acttgtttgcaaaggatttt-gcaaa-tc-ttttgttccaac B D Shrew agt--t-atttgtttgcaaaggacttt-gcagg-tc-ttttg-tccatc B D Elephant agt--t-atttgtttgcaaatgat-ct-gtggg-tc-ttttattctatc B D Rock hyrax agt--c-gtctgtttgc-aatgat-ct-gtggg-tc-ttttgttctatt B D Tenrec agt--g-gttggtttgcaaatgac-ccagcgga-tc-ttttgttcggtc B D Manatee agt--t-atttgtttgcagatgat-ct-gtggg-tc-ttttgttctatc B D Armadillo agt--t-atctgtttgcaaagggc--t-gtagg-tc-ttttgttctatc B D Sloth agt--t-atttgtttgcaaaggacttt-gtagg-tc-ttttgttccatc B D Opossum gtc--t-atatgctttcaggggatttt-gaaag-ta-tttgtatcagta B D Tasmanian devil gtt--c-gtaggct----------ttt-caaag-ta------------- B D Wallaby gtt--t-atatgctttcaagggacttt-gagag-ta-tttatttatatc B D Guinea pig NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN B D Sheep ================================================= B D Stickleback ================================================= B D Tetraodon ================================================= B D Fugu ================================================= B D Medaka ================================================= B D Atlantic cod ================================================= B D Nile tilapia ================================================= B D X. tropicalis ================================================= B D Platypus ================================================= B D Turkey ================================================= B D Coelacanth ================================================= B D Lizard ================================================= B D Budgerigar ================================================= B D Zebra finch ================================================= B D Chicken ================================================= B D Painted turtle ================================================= B D Dolphin NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN Inserts between block 33 and 34 in window B D Opossum 1bp B D Wallaby 779bp Alignment block 34 of 732 in window, 56699486 - 56699496, 11 bps B D Mouse ttattga-----c-----------ata B D Rat ttattga-----c-----------ata B D Kangaroo rat -tattga-----t-----------gta B D Naked mole-rat -tgttga-----c-----------cta B D Squirrel -tgttga-----c-----------ata B D Rabbit -tcttgg-----c-----------gtc B D Pika -ttttgg-----t-----------ata B D Human -tattga-----c-----------ata B D Chimp -tattga-----c-----------ata B D Gorilla -tattga-----c-----------ata B D Orangutan -tattga-----c-----------ata B D Gibbon -tattga-----c-----------ata B D Rhesus -tattga-----c-----------ata B D Baboon -tattga-----c-----------ata B D Marmoset -tattga-----c-----------aaa B D Squirrel monkey -tattga-----c-----------gca B D Tarsier -ggttga-----c-----------ata B D Mouse lemur -tattga-----c-----------ata B D Bushbaby -tattga-----c-----------ata B D Tree shrew -ttttga-----c-----------gta B D Pig -tgttga-----c-----------aaa B