Multiz Alignments of 35 Vertebrates

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Capitalize exons based on show bases

Place cursor over species for alignment detail. Click on 'B' to link to browser for aligned species, click on 'D' to get DNA for aligned species.
Alignment block 1 of 76 in window, 37102582 - 37102622, 41 bps B D Mouse atgga-------tctatgtaaat-ctttatcgatg-----------gaagaggcctttgc B D Rat atgga-------tccatgtaaat-ctttactgagg-----------gaagaggcctttgc GCF_003668045 atgga-------tctgtgtacat-cttta---atg-----------ggaggagcctt--- Beaver atgga-------cctatgtaaat-ctttactgatgggaaga-----ggaggagacat-gt B D Squirrel gtgta--------ctgcttgcct-cattattaaag-----a-----gaagaggactc-gt B D Rabbit atgtaaatgcatcctatttaaat-cttaattaatg-----g-----gaagagtactt-at B D Pika attga-------cctttgtaact-cttaatt-----------------agaatattc-at B D Human ataga-------cctatataaat-ccttattaatg-----g-----gaagatgactc-at B D Chimp ataga-------cctatataaat-ccttattaatg-----g-----gaagatgactc-at B D Bonobo ataga-------cctatataaat-ccttattaatg-----g-----gaagatgactc-at B D Gorilla ataga-------cctatataaat-ccttattaata-----g-----gaagatgactc-at B D Rhesus gcaga-------cctatgtaaat-ccttattaatg-----ggaa--gaagatgactc-at B D Marmoset ataga-------cctatataaat-cctta-----------------gaagattactc-at B D Tarsier ---ga-------cctatgtaaat-tcgtattaatg-----ggaa--gaggaaaactc-tt B D Bushbaby --------------tatgtaaac-tcttactacta-----agaa--gagagggactc-at B D Tree shrew atggg-------cctatgtaaat-ccttat-----------------aaga--------- B D Malayan flying lemur ataga-------cctatgtaaat-ccttattaatg-----g-----gaaggggattc-at B D Pig aggga-------tctatgtaaatacattgttaaca-----ggaagaggaagagactt-at B D Dolphin acgga-------cccatgtaaatcccttgttaatg-----ggaagaggaagggactt-at B D Cow atgga-------cccatgtaaatcccttgttaatg-----ggaag----agggactt-at B D Sheep atgga-------cccatgtaaatcccttgttaatg-----ggaag----agggactt-at B D Horse ataga-------ctca----------ttattaaca-----ggaagagaaaggaactt-at B D Chinese pangolin acaga-------cctacatatgtcccttattagtg-----gcaagagaaaggaactt-ac B D Dog atgaa-------cccatgtcgct-tgttattaaca-----ggaagtgaaagggactt--- B D Hawaiian monk seal atgaa-------cccatgtaaatcccttattaaca-----ggaagagaatgggactt-at B D Shrew ------------------------ctctcttcatg-----ggaagggaaaggaatgt-at B D Elephant ataga-------cccatctaaatccct--ttagca-----ggaagaggaaggaactg-at B D Tenrec acagg-------cccatgtaaaccccttattatca-----ggaagaggaaggaattc-at B D Zebrafish actga-------gtgctgtgaat------------------------------------- B D Guinea pig ============================================================ B D Opossum ============================================================ B D Hedgehog ============================================================ B D X. tropicalis ============================================================ B D Chicken ============================================================ B D Lamprey ============================================================ Alignment block 2 of 76 in window, 37102623 - 37102628, 6 bps B D Mouse ttc---atg B D Rat tgc---gtg Beaver ttc---ata B D Squirrel gtt---acc B D Rabbit ctt---att B D Pika cttagcagt B D Human ttt---att B D Chimp ttt---att B D Bonobo ttt---att B D Gorilla ttt---att B D Rhesus ttt---att B D Marmoset ttt---att B D Tarsier ttc---act B D Bushbaby ttc---att B D Tree shrew --------t B D Malayan flying lemur ttc---att B D Pig ttc---agt B D Dolphin ttc---aat B D Cow ttc---aat B D Sheep atc---aat B D Horse ttc---ata B D Chinese pangolin ttc---ttt B D Dog ------aag B D Hawaiian monk seal ctc---att B D Shrew ttc---att B D Elephant gtt---att B D Tenrec ttc---agt B D Chicken ctt---a-- B D Guinea pig ========= B D Opossum ========= B D Hedgehog ========= GCF_003668045 --------- B D Zebrafish --------- B D X. tropicalis ========= B D Lamprey ========= Inserts between block 2 and 3 in window B D Chicken 9bp Alignment block 3 of 76 in window, 37102629 - 37102630, 2 bps B D Mouse ga B D Rat ga Beaver aa B D Squirrel aa B D Rabbit aa B D Pika aa B D Human aa B D Chimp aa B D Bonobo aa B D Gorilla aa B D Rhesus aa B D Marmoset aa B D Tarsier aa B D Bushbaby ga B D Tree shrew aa B D Malayan flying lemur ac B D Pig aa B D Dolphin aa B D Cow aa B D Sheep aa B D Horse aa B D Chinese pangolin aa B D Dog aa B D Hawaiian monk seal aa B D Shrew gc B D Elephant aa B D Tenrec ac B D Opossum ta B D Chicken aa B D Guinea pig == B D Hedgehog == GCF_003668045 -- B D Zebrafish -- B D X. tropicalis == B D Lamprey == Alignment block 4 of 76 in window, 37102631 - 37102650, 20 bps B D Mouse atttttta-c--tgt-------aaca--------------------t-cct B D Rat atttttca-c--tgt-------aaaa--------------------cgcct GCF_003668045 gtttcata-c--tgt-------aaaa--------------------gaact Beaver atatt-ta-c--cat-------aaaa--------------------gaaca B D Squirrel gactttca-c--tgt-------aaca--------------------gaact B D Rabbit atgtttta-c--tat-------aaaa--------------------gaact B D Pika atgcttca-t--gat-------aaaa--------------------gaact B D Human atctttta-c--ca------------------------------------- B D Chimp atctttta-c--ca------------------------------------- B D Bonobo atctttta-c--ca------------------------------------- B D Gorilla atctttta-c--ca------------------------------------- B D Rhesus atctctta-c--ca------------------------------------- B D Marmoset atcttttacc--ca------------------------------------- B D Tarsier atattata-c--tgt-------aaaa--------------------taac- B D Bushbaby at-tttta-t--tat-------agaa--------------------gaac- B D Tree shrew atcct-------tat-------gata--------------------aatc- B D Malayan flying lemur atctttta-c--tat-------aaaa--------------------gaac- B D Pig ctcttcta-c--tat-------aaaaaaaacaacaaacaaacaaacaaact B D Dolphin -tctttta-c--tgt-------aaaa--------------------gaact B D Cow -tctttta-a--tat-------agaa--------------------gaact B D Sheep -tctttta-a--tat-------agaa--------------------gaact B D Horse acctttt-------t-------aaaa--------------------gaact B D Chinese pangolin atcttttc-c--tgt-------aaaa--------------------caact B D Dog atatttta-c--tat----------a--------------------gaact B D Hawaiian monk seal atctttta-a--tat----------a--------------------gaact B D Shrew cattttta-c--tgt--------aaa--------------------gaact B D Elephant atctttta-c--tat-------acaa--------------------gaact B D Tenrec atctttta-c--tat-------aaag--------------------gaact B D Opossum attttcaa-c--tgtttccctaaaca--------------------gaatt B D Chicken tgctattt-c--ca------------------------------------- B D X. tropicalis ttctttta-cattgt------------------------------------ B D Zebrafish -tcactga-c--cct------------------------------------ B D Guinea pig =================================================== B D Hedgehog =================================================== B D Lamprey =================================================== Alignment block 5 of 76 in window, 37102651 - 37102657, 7 bps B D Mouse t-tatcgt B D Rat t-tatcat GCF_003668045 t-tatcat Beaver t-tatcat B D Squirrel t-caccat B D Guinea pig t-tatcat B D Rabbit t-tatcat B D Pika t-aatcat B D Human --tattat B D Chimp --tattat B D Bonobo --tattat B D Gorilla --tattat B D Rhesus --tattat B D Marmoset --tattat B D Tarsier --tattat B D Bushbaby tttatcat B D Tree shrew cttatcat B D Malayan flying lemur tttacctt B D Pig -ttgccat B D Dolphin -ttgccat B D Cow -ctgccat B D Sheep -ctgccat B D Horse -ttgccat B D Chinese pangolin -ttgccat B D Dog -ttgccat B D Hawaiian monk seal -ttgccat B D Shrew -t---cat B D Elephant -ttaccat B D Tenrec -ttg-cat B D Opossum -ttctcat B D Chicken --tctgac B D X. tropicalis --ttttgt B D Zebrafish ------gt B D Hedgehog ======== B D Lamprey ======== Alignment block 6 of 76 in window, 37102658 - 37102659, 2 bps B D Mouse -tt B D Rat -tt GCF_003668045 -ta Beaver -tg B D Squirrel -tg B D Guinea pig -tg B D Rabbit -tg B D Pika -tg B D Human -tg B D Chimp -tg B D Bonobo -tg B D Gorilla -tg B D Rhesus -tg B D Marmoset -tg B D Tarsier -tg B D Bushbaby -tg B D Tree shrew -tg B D Malayan flying lemur -tg B D Pig -tg B D Dolphin -tg B D Cow -tg B D Sheep -tg B D Horse -tg B D Chinese pangolin -tg B D Dog -tg B D Hawaiian monk seal -tg B D Shrew -tt B D Elephant -tg B D Tenrec -tg B D Opossum -tt B D Chicken -tg B D X. tropicalis -tt B D Zebrafish -tg B D Lamprey tt- B D Hedgehog === Inserts between block 6 and 7 in window B D Shrew 2bp B D Opossum 1bp B D X. tropicalis 4bp Alignment block 7 of 76 in window, 37102660 - 37102801, 142 bps B D Mouse cagatgccagcttgaaacccaaggtggagtgcagtgtggtgaccgagttcactgaccacatctgtgtgac B D Rat cagatgccaacgtgaaacccaaggtggagtgcagtgtggtgacagagttcacggaccacatctgtgtgac GCF_003668045 cagatgccaacttgaaacccaaggtggaatgcagtgtggtgacagaatttactgaccacatttgtgtgac Beaver cagatgccagcttgaagccaaaggtagaatgtagtgtggtgacagagttcaccgatcatatttgtgtgac B D Squirrel cagatgccagcctaaagccaaaggtggaatgcagcgtggtgacagaattcacggaccacatctgtgtgac B D Guinea pig cagacgccaacttgaagccaaaggtagaatgtagtgtggtaacagaattcactgatcacatttgtgtgac B D Rabbit cagatgccaacctaaagccaaaggtggaatgcagtgtggtgacagagttcactgaccatatttgtgtgac B D Pika cagatgtcaacctgaagccaaaggtggaatgcagtgtggtaacagagttcactgaccacatttgtgtgac B D Human cagatgccagcctgaagccaaaagtagaatgtagtgtggtgacagagttcactgaccacatttgtgtgac B D Chimp cagatgccagcctgaagccaaaagtagaatgtagtgtggtgacagagttcactgaccacatttgtgtgac B D Bonobo cagatgccagcctgaagccaaaagtagaatgtagtgtggtgacagagttcactgaccacatttgtgtgac B D Gorilla cagatgccagcctgaagccaaaagtagaatgtagtgtggtgacagagttcactgaccacatttgtgtgac B D Rhesus cagatgccaacctgaagccaaaagtagaatgtagtgtggtgacagagttcactgaccacatttgtgtgac B D Marmoset cagatgccaacctcaagccaaaagtagaatgtagtgtggtgacagagttcactgaccacatttgtgtgac B D Tarsier cagatgccaacttgaagccaaaagtagaatgtagtgtggtgacagagttcactgaccacatttgtgtgac B D Bushbaby cagatgccaacatgaagccaaaagtcgaatgtagtgtggtgacagagttcactgaccatatttgtgtgac B D Tree shrew cagatgccaacctgaaaccaaaggtagaatgtagtgtggtaacagagttcactgaccatatttgtgtgac B D Malayan flying lemur cagatgccaacctgaagccaaaggtagaatgtagtgtggtgactgagttcactgaccacatctgtgtgac B D Pig cagatgccagcctgaagccaaaggtagaatgcagtgtggtgacagagttcactgaccacatctgtgtgac B D Dolphin cagacgccagcctgaagccaaaggtagaatgcagtgtggtgacagagttcactgaccacatttgtgtgac B D Cow cagatgccagcctgaagccaaaggtagaatgcagtgtggtgacagagttcactgaccacatctgtgtgac B D Sheep cagatgccagcctgaagccaaaggtggaatgcagtgtggtgacagagttcactgaccacatctgtgtgac B D Horse cagatgcaaacctgaagccaaaggtagaatgtagtgtggtgacagagttcaccgaccacatttgtgtgac B D Chinese pangolin cagatgccaacctgaagccaaaggtagaatgtagtgtggtgacagagttcactgaccacatttgtgtgac B D Dog cagatgccagcctgaagccgaaggtagaatgtagtgtggtgacagagttcactgaccacatttgtgtgac B D Hawaiian monk seal cagatgccagcctgaagccgaaggtagaatgtagtgtggtgacagagttcactgaccacatttgtgtgac B D Hedgehog cagatgcagacctgaagcctaaggtggagtgcagcgtggtgaccgagttcactgaccacatttgtgtgac B D Shrew cagatgctaacttgaagcccaaggtggaatgcagcgtggttacagagttcactgaccacatctgcgtgac B D Elephant cagacaccaacctgaagccaaaggtagaatgtagtgtggtgacagagtttacggaccacatttgtgtgac B D Tenrec cagatgcccacctgaagccaaaggtagaatgcagtgtggtaacggagttcactgaccacatttgtgtgac B D Opossum cagacaccaacatcaagccgaaggtagaatgtagtgtggtaactgaattcacagaccacatttgtgtgac B D Chicken tagatacaagcgttaaaccaaaggtggaatgcagtgtggtaactgaatttacagaccacatctgtgtaac B D X. tropicalis tagatgacagc---aaacctaaggtggaatgtagtgtggtaacggagtttactgaccatatctgtgtgac B D Zebrafish cagatgccaacagcaaacccaaagtggagtgcagtgtggtgaccgagttcaccgatcacatctgcgtcac B D Lamprey cagatgcatcacggaaaccgaaggtggagtgcagcgttgtgacggagttccgcgaccacatctgcgtgac Mouse tatggatgccgagctcatcatgtttctccatgatctggtgtcagcatatctcaaagaaaaagaaaagggt Rat gatggatgctgagctcatcatgtttctccatgatctagtgtcagcatatctgaaagaaaaggaaaagggt GCF_003668045 tatggatgctgagctcatcatgtttctccatgatctagtgtcagcatatctgaaggaaaaagaaaagggt Beaver catggatgctgaactcatcatgtttcttcatgatttagtgtcagcttatctgaaagaaaaagaaaaaggt Squirrel catggatgctgagctcatcatgtttctccatgatttagtgtcagcttatctcaaagaaaaagaaaaaggt Guinea pig catggatgctgagctcatcatgtttcttcatgatttagtgtcagcttaccttaaagaaaaagaaaaaggt Rabbit catggatgctgagctcattatgtttctgcatgatctagtgtcagcttatcttaaagaaaaagaaaaaggt Pika catggatgctgagctcatcatgtttctacatgatctagtgtcagcttatctgaaagaaaaagaaaaaggt Human tatggatgctgagctcatcatgtttcttcatgatttagtatcagcttatcttaaagaaaaagaaaaaggt Chimp tatggatgctgagcttatcatgtttcttcatgatttagtgtcagcttatcttaaagaaaaagaaaaaggt Bonobo tatggatgctgagcttatcatgtttcttcatgatttagtgtcagcttatcttaaagaaaaagaaaaaggt Gorilla tatggatgctgagctcatcatgtttcttcatgatttagtgtcagcttatcttaaagaaaaagaaaaaggt Rhesus tatggatgctgagctcatcatgtttcttcatgatttagtgtcagcttatcttaaagaaaaagaaaaaggt Marmoset tatggatgctgagctcatcatgtttcttcatgatttagtgtcagcttatcttaaagaaaaagaaaaaggt Tarsier tatggatgctgagctcatcatgtttcttcatgatttagtgtcagcttatcttaaagaaaaagaaaaaggt Bushbaby tatggatgctgagctcatcatgtttcttcatgatttagtctcagcgtatcttaaagaaaaagaaaaaggt Tree shrew tatggatgctgagctcattatgtttcttcatgatttagtgtcagcttatcttaaagaaaaagaaaaaggt Malayan flying lemur tatggatgctgagctcatcatgtttctccatgatttagtgtcagcttatcttaaagaaaaagaaaaaggt Pig aatggatgctgagctcatcatgtttcttcatgatttagtgtcagcttatcttaaagaaaaagaaaaaggt Dolphin gatggacgctgagctcatcatgtttcttcatgatttagtgtcagcttatcttaaagaaaaagaaaaaggt Cow gatggatgctgagcttatcatgtttcttcatgacttagtatcagcttatcttaaagaaaaagaaaaaggt Sheep gatggatgctgagctcatcatgtttcttcatgatttagtatcagcttatcttaaagaaaaagaaaaaggt Horse tatggatgctgagctcatcatgtttcttcatgatttagtgtcggcttatcttaaagaaaaagaaaaaggt Chinese pangolin tatggatgctgagcttatcatgtttcttcatgatttagtgtcggcttatcttaaagaaaaagaaaaaggt Dog tatggatgctgagctcatcatgttccttcatgatttagtgtctgcttatcttaaggaaaaagaaaaaggt Hawaiian monk seal tatggatgctgagctcatcatgtttcttcatgatttagtgtcggcttatctcaaagaaaaagaaaaaggt Hedgehog catggacgctgagctcatcatgtttctccatgacctggtgtctgcgtacctgaaagagaaggaaaaaggt Shrew catggatgctgagctcatcatgttcctccatgatctagtgtctgcttatctgaaagaaaaagaaaaaggt Elephant tatggatgcagagctcatcatgtttcttcatgatttagtgtcagcttatctaaaagaaaaagaaaaaggt Tenrec tatggatgctgagctcattatgtttttgcacgatttagtgtcggcttacctaaaagaaaaagaaaaaggt Opossum gatggacgccgaactgatcatgttccttcatgacttagtgtccgcctatcttaaagaaaaagaaaaaggt Chicken tatggatgctgaattgattatgtttctgcatgacttggtgtcggcttatctaaaagaaaaagaaaaaggt X. tropicalis gatggatgcagaactgatcatattcctacatgatatggtgtctgcttacctaaaggagaaagaaaaaggt Zebrafish catggatgcagagctcattatgttcctgcatgacctggtgtcggcgtacctgaaggaaaaagagaaaggt Lamprey gatggacgccgagctcatcatgttcctgcatgacctcgtctccgcttacctcaaggagaaggagaaaggt Mouse gg Rat gg GCF_003668045 gt Beaver ag Squirrel gg Guinea pig ga Rabbit gt Pika at Human gg Chimp gg Bonobo gg Gorilla gg Rhesus gg Marmoset gg Tarsier ga Bushbaby gg Tree shrew ga Malayan flying lemur gg Pig gg Dolphin gg Cow gg Sheep gg Horse gc Chinese pangolin gg Dog gg Hawaiian monk seal gg Hedgehog gg Shrew ag Elephant ga Tenrec ga Opossum ag Chicken aa X. tropicalis ac Zebrafish ga Lamprey ag Inserts between block 7 and 8 in window B D Lamprey 5079bp Alignment block 8 of 76 in window, 37102802 - 37102803, 2 bps B D Mouse gt B D Rat gc GCF_003668045 gt Beaver gt B D Squirrel gc B D Guinea pig gt B D Rabbit gc B D Pika gt B D Human gt B D Chimp gt B D Bonobo gt B D Gorilla gt B D Rhesus gt B D Marmoset gt B D Tarsier gt B D Bushbaby gt B D Tree shrew gt B D Malayan flying lemur gt B D Pig gt B D Dolphin gt B D Cow gt B D Sheep gt B D Horse gt B D Chinese pangolin gt B D Dog gt B D Hawaiian monk seal gt B D Hedgehog gt B D Shrew gt B D Elephant gt B D Tenrec gt B D Opossum gc B D Chicken gc B D X. tropicalis a- B D Zebrafish ga B D Lamprey == Inserts between block 8 and 9 in window B D Shrew 2737bp B D Chicken 888bp B D X. tropicalis 1bp Alignment block 9 of 76 in window, 37102804 - 37102805, 2 bps B D Mouse tg B D Rat tg GCF_003668045 tt Beaver tg B D Squirrel tg B D Guinea pig tc B D Rabbit ag B D Pika gg B D Human gg B D Chimp gg B D Bonobo gg B D Gorilla gg B D Rhesus gg B D Marmoset gg B D Tarsier ag B D Bushbaby ag B D Tree shrew ag B D Malayan flying lemur ag B D Pig aa B D Dolphin aa B D Cow aa B D Sheep aa B D Horse ag B D Chinese pangolin ag B D Dog ag B D Hawaiian monk seal ag B D Hedgehog ga B D Elephant ag B D Tenrec ag B D Opossum ag B D X. tropicalis -g B D Zebrafish tg B D Shrew == B D Chicken == B D Lamprey == Inserts between block 9 and 10 in window B D Zebrafish 5319bp Alignment block 10 of 76 in window, 37102806 - 37102806, 1 bps B D Mouse c B D Rat c GCF_003668045 t Beaver t B D Squirrel c B D Guinea pig c B D Rabbit t B D Pika t B D Human a B D Chimp a B D Bonobo a B D Gorilla a B D Rhesus a B D Marmoset a B D Tarsier a B D Bushbaby a B D Tree shrew c B D Malayan flying lemur c B D Pig a B D Dolphin c B D Cow c B D Sheep t B D Horse c B D Chinese pangolin c B D Dog c B D Hawaiian monk seal c B D Hedgehog c B D Elephant c B D Tenrec c B D Opossum c B D X. tropicalis c B D Shrew = B D Zebrafish = B D Chicken = B D Lamprey = Inserts between block 10 and 11 in window B D Opossum 7995bp Alignment block 11 of 76 in window, 37102807 - 37102808, 2 bps B D Mouse at B D Rat at GCF_003668045 at Beaver gt B D Squirrel at B D Guinea pig at B D Rabbit at B D Pika gt B D Human at B D Chimp at B D Bonobo at B D Gorilla at B D Rhesus at B D Marmoset at B D Tarsier at B D Bushbaby a- B D Tree shrew at B D Malayan flying lemur at B D Pig at B D Dolphin at B D Cow ac B D Sheep ac B D Horse at B D Chinese pangolin at B D Dog at B D Hawaiian monk seal at B D Hedgehog at B D Elephant at B D Tenrec a- B D X. tropicalis ct B D Opossum == B D Shrew == B D Zebrafish == B D Chicken == B D Lamprey == Inserts between block 11 and 12 in window B D Pig 7bp B D Dolphin 7bp B D Cow 7bp B D Sheep 7bp B D Horse 20bp B D Chinese pangolin 7bp B D Dog 7bp B D Hawaiian monk seal 7bp B D Hedgehog 1878bp Alignment block 12 of 76 in window, 37102809 - 37102832, 24 bps B D Mouse g---------gtt------tttctttcttctt-----------t---------c-----aa-tta----- B D Rat a---------gtt------ttcctttcttctg-----------t---------c-----at-ata----- GCF_003668045 a---------ttt------ttattttcttctt-----------t---------t---caag-tta----- Beaver g---------ttg------ttatttttttctt-----------t---------c----aag-cca----- B D Squirrel g---------ttc------ttttttttttttt-----------t---------ctttcaag-ctg----- B D Guinea pig a---------ttt------tttatttttt--------------t---------c----aag-ctg----- B D Rabbit a----------------------ttttttctt-----------t---------c----aag-ctg----- B D Pika a----------------------tttttccat-----------t---------c----aagtttg----- B D Human a---------ctc-----------tttttctt-----------t---------t----agg-ctg----- B D Chimp a---------ctc-----------tttttctt-----------t---------t----agg-ctg----- B D Bonobo a---------ttc-----------tttttctt-----------t---------t----agg-ctg----- B D Gorilla a---------ctc-----------tttttctt-----------t---------t----agg-ctg----- B D Rhesus a---------ctc-------------tttctt-----------t---------c----agg-ctg----- B D Marmoset a---------ttc------------ttttcta-----------t---------c----aag-ctg----- B D Tarsier a---------ttt------tcttttttttctt-----------t---------c----cag-ctg----- B D Bushbaby ------------------------tttttctt-----------t---------c----aag-ctg----- B D Tree shrew t---------ttt-----------tccctttc-------------------------------------- B D Malayan flying lemur a---------tta-----------tttttattattattattatt---------c----agg-ctg----- B D Pig t---------ttt-------------ttcatt-----------a--------------aag-ctt----- B D Dolphin tttggttttgttt-------------ttccct-----------t---------c----aag-ctt----- B D Cow t---------ttt-------------ttcact-----------a---------c----cat-tta----- B D Sheep t---------ttt-------------ttcact-----------a---------c----cat-tta----- B D Horse t---------tttggtgtttttttttttcctt-----------a---------a----aag-ctt----- B D Chinese pangolin t---------tttgctttgttttgtttttctt-----------t---------c----aag-ctt----- B D Dog t---------ttt----------------ctt-----------t---------c----cca-ttt----- B D Hawaiian monk seal t---------ttt---------ttttttcctt-----------t---------c----caa-ttt----- B D Elephant ------attctcc------ccccttcctcccc-----------tccaccccacc----aag-cta----- B D Tenrec ----------tca------ctctgtcttgccc-----------t---------a----aag-ctg----- B D X. tropicalis ----------------------gggttttctg-----------t---------g----tgg-tccccatt B D Opossum ====================================================================== B D Shrew ====================================================================== B D Hedgehog ====================================================================== B D Zebrafish ====================================================================== B D Chicken ====================================================================== B D Lamprey ====================================================================== Mouse - Rat - GCF_003668045 - Beaver - Squirrel - Guinea pig - Rabbit - Pika - Human - Chimp - Bonobo - Gorilla - Rhesus - Marmoset - Tarsier - Bushbaby - Tree shrew - Malayan flying lemur - Pig - Dolphin - Cow - Sheep - Horse - Chinese pangolin - Dog - Hawaiian monk seal - Elephant - Tenrec - X. tropicalis a Opossum = Shrew = Hedgehog = Zebrafish = Chicken = Lamprey = Inserts between block 12 and 13 in window B D X. tropicalis 448bp Alignment block 13 of 76 in window, 37102833 - 37102838, 6 bps B D Mouse catgaa B D Rat ca---- GCF_003668045 caggaa Beaver cagaac B D Squirrel cagcaa B D Guinea pig cagaaa B D Rabbit aaggaa B D Pika caggaa B D Human caagaa B D Chimp caagaa B D Bonobo caagaa B D Gorilla caagaa B D Rhesus caggaa B D Marmoset cagtaa B D Tarsier ctggaa B D Bushbaby aaggaa B D Tree shrew -----a B D Malayan flying lemur taggga B D Pig caggaa B D Dolphin caggaa B D Cow tatgaa B D Sheep tatgaa B D Horse caggaa B D Chinese pangolin cagtaa B D Dog caggaa B D Hawaiian monk seal caggaa B D Elephant caggaa B D Tenrec caagaa B D Opossum ====== B D Shrew ====== B D Hedgehog ====== B D Zebrafish ====== B D X. tropicalis ====== B D Chicken ====== B D Lamprey ====== Inserts between block 13 and 14 in window B D Cow 3555bp B D Sheep 3184bp Alignment block 14 of 76 in window, 37102839 - 37102870, 32 bps B D Mouse aggcaa----gtgccagtgg--------------------attaacatggagaatg B D Rat ------------------gg--------------------attggcatgg-ggata GCF_003668045 agacag----gtgtcaatgg--------------------attagcatggagaatg Beaver aggtag----cagtcaatgtcatagacagctgtcaatgccatttatgtga-----a B D Squirrel aggcag----ctattgatgc-------------------cacttaaatgg-----a B D Guinea pig aagcaa----caataatagc-------------------caattacatgg-----a B D Rabbit ataca-----------atgt-------------------catgtatatga-----g B D Pika at--------------gtgt-------------------catt--tatgg-----a B D Human tggcag----ctgtcaatgc-------------------catttacatga-----a B D Chimp tggcag----ctgtcaatgc-------------------catttacatga-----a B D Bonobo tggcag----ctgtcaatgc-------------------catttacatga-----a B D Gorilla tggcag----ctgtcaatgc-------------------catttacatga-----a B D Rhesus tggcag----ctgtcagtgc-------------------catttacatga-----a B D Marmoset tggcag----ctaccaatgc-------------------catttacattg-----a B D Tarsier aggcaa----ctatcaatgc-------------------cttatatatgt-----a B D Bushbaby aggcag----ctatcaatgt-------------------catttatatgg-----a B D Tree shrew aggcat----ctgttaatac------------acttagacacttatatgg-----a B D Malayan flying lemur aggcag----ctgtgaatgc-------------------catttatattg-----a B D Pig aggcag----ctctcactac-------------------catctataagg------ B D Dolphin aggcag----ctctcactac-------------------aatttatatgg-----a B D Horse aggtag-------------------------------------------------- B D Chinese pangolin aggcagccagctgtcaatcc-------------------cacttttatgg-----a B D Dog aggccg----ttgtcagtac-------------------catttatatgg-----a B D Hawaiian monk seal aggcag----ttgtcagtgc-------------------cattcatatgg-----a B D Elephant aggcag----ctgtctatgc-------------------catttagatga-----a B D Tenrec aggtag--------ctatgt-------------------gatttagatga-----g B D Sheep ======================================================== B D Opossum ======================================================== B D Shrew ======================================================== B D Cow ======================================================== B D Hedgehog ======================================================== B D Zebrafish ======================================================== B D X. tropicalis ======================================================== B D Chicken ======================================================== B D Lamprey ======================================================== Alignment block 15 of 76 in window, 37102871 - 37102937, 67 bps B D Mouse ttttta-tggtctggggataggatg--------aatg--c-----ctt---tttcctctgtggactgcaa B D Rat tcttca-tggcctagggacaggatg--------catg--c-----ctt---tt---cctctgggctgc-a GCF_003668045 tttttg-agttct-gtgatagaatgaatgga-acatg--t-----ctt---tttc-catgtgggctgcaa Beaver tttttg-tggtctagttattgagta----aa-atatg--t-----ctc---ctttctcagtgagttac-- B D Squirrel ttttta-tggtctagtgctaaaagg-gtgga-ctata--t-----ctc---cttcct----------caa B D Guinea pig tttttg-tggtctaatgataaaatg--agta-gaatg--t-----ctt---ctttagc----aactgcaa B D Rabbit ttttta-tagtctagtaataaaatgaatata-aaatg--t-----ctc---cttcctccgtgagttgcta B D Pika ttttta-tagtctaatgataaaatgaatgta-aaata--------ctc---tttcctccctgagttgcta B D Human ttgtta-tggtctaatgagaaaatgagtgga-atata--t-----ctc---cc------gtgagttgaag B D Chimp ttgtta-tggtctaatgagaaaatgagtgga-atata--t-----ctc---cc------gtgagttgaag B D Bonobo ttgtta-tggtctaatgagaaaatgagtgga-atata--t-----ctc---cc------gtgagttgaag B D Gorilla ttgtta-tggtctaatgagaaaatgagtgga-atata--t-----ctc---ct------gtgagttgaag B D Rhesus ttgtta-tggtctaatgagaaaatgagtgga-atata--t-----ctccttct------gtgagttgaag B D Marmoset ttttta-cggtctattgagaaaacaagtgga-atata--tatctcctc---ct------atgaactgaag B D Tarsier ttttta-tggtcttgtgagaaaatgag-gga-ctttg--t----cctt---ct------atgagttggaa B D Bushbaby ttttta-tggtctagtgagaaaatg----------tc--t----cctc---ct------gggaattgcaa B D Tree shrew ttttta-tggtctaatgataaatgaatggaatatgta--t-----cct---tt------atgagttgcaa B D Malayan flying lemur ttttta-tggtctagtaataaaataagtggatgcttcctt-----cct---ct------atgagttgcag B D Pig gtttta-tggtctattgataaaatgg--------------------------------tataacttacaa B D Dolphin ttttta-tggtctagtgataaaatgggtaga-atgtg--t-----ctc---cttcctctatgagttacaa B D Sheep ttttta-tagtccagtgataaaatgagtgga-atgtg--t-----ctc---cttcctctatgagttacaa B D Horse ------------------tagaatgag------tctc--c-----ttc---ct----ccattagctgcaa B D Chinese pangolin tttttattggtctcatgacaaaatgagtgga-atgtg--t-----ctc---ct----ctatgaattacaa B D Dog ttttta-tggtctaatggtaaaatgcgt-----tctg--t-----ctc---cttc--ctttaaattataa B D Hawaiian monk seal ttttta-tggtctaatgataaaatgagtgga-atgta--t-----ctc---cttc--ctttgagttgtaa B D Elephant ttttta-tggtctagggataaaatggatgga-atgtg--t-----ctc---cttcctctatgagttgtaa B D Tenrec ttttta-tggtctagggagaaagtgggtggg-atgtg--c-----cta---atttatctatcagttgtaa B D Opossum ====================================================================== B D Shrew ====================================================================== B D Cow ====================================================================== B D Hedgehog ====================================================================== B D Zebrafish ====================================================================== B D X. tropicalis ====================================================================== B D Chicken ====================================================================== B D Lamprey ====================================================================== Mouse atgtcatga------ag--tagca Rat gtgtcatgc------ag--aagca GCF_003668045 atgtcaaaa------aaataataa Beaver -------------------aaaca Squirrel atatcagta------aa--cagca Guinea pig gtgtcagta------aa--taaca Rabbit gtatcagta------aa--cagca Pika gcatgtgta------aa--tagca Human atatcagta------aa--tagcg Chimp atatcagta------aa--tagcg Bonobo atatcagta------aa--tagcg Gorilla atatcagta------aa--tagtg Rhesus atatcagta------aa--tagcg Marmoset atagcagta------aa--tagcg Tarsier ataacagta------aa--caaca Bushbaby atatcagta------aa--tgaca Tree shrew atatcagtaaatattaa--tagca Malayan flying lemur atgtcacta------aa--taacg Pig atatcaata------aa--t---- Dolphin atatcaata------aa--t---- Sheep atagaaata------aa------- Horse atatcaata------ca--t-aca Chinese pangolin atatcaata------aa--tgaaa Dog atatcaatc------aa--tgaaa Hawaiian monk seal atatcaatc------aa--tgaaa Elephant a----acta------ga--tagca Tenrec a----actc------tg--tagca Opossum ======================== Shrew ======================== Cow ======================== Hedgehog ======================== Zebrafish ======================== X. tropicalis ======================== Chicken ======================== Lamprey ======================== Inserts between block 15 and 16 in window B D Pig 8bp B D Dolphin 7bp B D Sheep 7bp B D Tenrec 2194bp Alignment block 16 of 76 in window, 37102938 - 37102939, 2 bps B D Mouse ct- B D Rat ct- GCF_003668045 tt- Beaver tt- B D Squirrel tt- B D Guinea pig at- B D Rabbit tt- B D Pika tt- B D Human tt- B D Chimp tt- B D Bonobo tt- B D Gorilla tt- B D Rhesus tt- B D Marmoset tt- B D Tarsier ct- B D Bushbaby tt- B D Tree shrew tt- B D Malayan flying lemur tt- B D Horse ta- B D Chinese pangolin ta- B D Dog ta- B D Hawaiian monk seal ta- B D Elephant -ta B D Sheep === B D Opossum === B D Pig === B D Shrew === B D Cow === B D Dolphin === B D Hedgehog === B D Tenrec === B D Zebrafish === B D X. tropicalis === B D Chicken === B D Lamprey === Inserts between block 16 and 17 in window B D Squirrel 676bp B D Horse 17bp B D Chinese pangolin 15bp B D Dog 17bp B D Hawaiian monk seal 17bp Alignment block 17 of 76 in window, 37102940 - 37102956, 17 bps B D Mouse -----tctaaaa--ctacatg----aca B D Rat -----tc-agga--cagtctg----aca GCF_003668045 -----actaatg--ctgtgtg----aca Beaver -----actaaca--ccatatt----ata B D Guinea pig -----actgtga--c-gtatg----aca B D Rabbit -----agcaagg--ctatgtg----aaa B D Pika -----aaacata--ctgtgtg----aca B D Human -----agtaaga--cta--tc----aca B D Chimp -----agtaaga--cta--tc----aca B D Bonobo -----agtaaga--cta--tc----aca B D Gorilla ---------aga--cta--tc----aca B D Rhesus -----agtaaca--cta--tc----aca B D Marmoset -----agtaaga--cta--tc----aca B D Tarsier -----aataggc--cca--tatgtgaca B D Bushbaby -----ggtaagatttta--tg----aca B D Tree shrew -----agtaaga--caaggtg----aca B D Malayan flying lemur -----agtaaga--ctctgtg----aca B D Pig -----agtaaga--ctatgtg----ata B D Dolphin -----agtaaga--ctatgtg----ata B D Sheep -----agtaaga--ctgtttg----ata B D Horse -----agtaaga--cgatgtg----ata B D Chinese pangolin -----agtaaga--ctgtacg----aca B D Dog -----agtaaaa--ctatgtg----aca B D Hawaiian monk seal -----actaaaa--ctgtgtg----aca B D Elephant tttttagtaaga--ctatgta----aca B D Opossum ============================ B D Shrew ============================ B D Cow ============================ B D Hedgehog ============================ B D Tenrec ============================ B D Squirrel ============================ B D Zebrafish ============================ B D X. tropicalis ============================ B D Chicken ============================ B D Lamprey ============================ Inserts between block 17 and 18 in window B D Guinea pig 1140bp Alignment block 18 of 76 in window, 37102957 - 37102961, 5 bps B D Mouse gg-ttt B D Rat ga-ctc GCF_003668045 gatttc Beaver tagttt B D Rabbit gacctt B D Pika gacgac B D Human gactt- B D Chimp gactt- B D Bonobo gactt- B D Gorilla gactt- B D Rhesus gactt- B D Marmoset gactt- B D Tarsier ggctt- B D Bushbaby gactt- B D Tree shrew gacat- B D Malayan flying lemur gtctt- B D Pig gattc- B D Dolphin gactt- B D Sheep ggctt- B D Horse gactt- B D Chinese pangolin gactt- B D Dog gacat- B D Hawaiian monk seal gactt- B D Elephant gactt- B D Guinea pig ====== B D Opossum ====== B D Shrew ====== B D Cow ====== B D Hedgehog ====== B D Tenrec ====== B D Squirrel ====== B D Zebrafish ====== B D X. tropicalis ====== B D Chicken ====== B D Lamprey ====== Inserts between block 18 and 19 in window B D Human 1bp B D Chimp 1bp B D Bonobo 1bp B D Gorilla 1bp B D Rhesus 1bp B D Marmoset 1bp B D Tarsier 1bp B D Bushbaby 1bp B D Malayan flying lemur 6924bp B D Pig 1bp B D Dolphin 1bp B D Sheep 1bp B D Horse 1bp B D Chinese pangolin 1bp B D Dog 1bp B D Hawaiian monk seal 1bp B D Elephant 1bp Alignment block 19 of 76 in window, 37102962 - 37102978, 17 bps B D Mouse ctgagtttctgctggat B D Rat ctgcgtttctgctgcat GCF_003668045 ctgagtatcagctagat Beaver ctgagtatctgctagat B D Rabbit ttgaatatctgctaaat B D Pika ctgaatatctgttggat B D Human ctgagtacttgctatat B D Chimp ctgagtacttgctatat B D Bonobo ctgagtacttgctatat B D Gorilla ctgagtacttgctatat B D Rhesus ctgagtacttgctatat B D Marmoset ctgagtacttgctatat B D Tarsier ctgagtctttcctggat B D Bushbaby ctaagtagttgctagat B D Tree shrew -tgagtatctgctaggt B D Pig cggagtatctgctaggt B D Dolphin ctgagtatctgccaggt B D Sheep ctaagtatctgctaggt B D Horse -tgaatatctgctaggt B D Chinese pangolin ctgaatgactgccaggt B D Dog ctgagtgtctgctatgt B D Hawaiian monk seal ctgagtatctgctatgt B D Elephant ctgagtatctgctaggc B D Guinea pig ================= B D Opossum ================= B D Shrew ================= B D Cow ================= B D Hedgehog ================= B D Tenrec ================= B D Squirrel ================= B D Zebrafish ================= B D Malayan flying lemur ================= B D X. tropicalis ================= B D Chicken ================= B D Lamprey ================= Inserts between block 19 and 20 in window B D Bushbaby 573bp Alignment block 20 of 76 in window, 37102979 - 37102981, 3 bps B D Mouse gca B D Rat aca GCF_003668045 aca Beaver aga B D Rabbit acc B D Pika ata B D Human ata B D Chimp ata B D Bonobo ata B D Gorilla ata B D Rhesus ata B D Marmoset ata B D Tarsier ata B D Tree shrew aca B D Pig aca B D Dolphin aca B D Sheep aca B D Horse aca B D Chinese pangolin aca B D Dog cca B D Hawaiian monk seal cca B D Elephant aca B D Guinea pig === B D Opossum === B D Shrew === B D Cow === B D Hedgehog === B D Bushbaby === B D Tenrec === B D Squirrel === B D Zebrafish === B D Malayan flying lemur === B D X. tropicalis === B D Chicken === B D Lamprey === Inserts between block 20 and 21 in window B D Rat 1047bp B D Human 823bp B D Chimp 824bp B D Bonobo 823bp B D Gorilla 819bp B D Marmoset 811bp B D Tree shrew 1528bp B D Pig 540bp B D Sheep 1442bp B D Chinese pangolin 6111bp B D Elephant 756bp Alignment block 21 of 76 in window, 37102982 - 37102982, 1 bps B D Mouse t GCF_003668045 t Beaver t B D Rabbit t B D Pika t B D Rhesus c B D Tarsier c B D Dolphin t B D Horse t B D Dog t B D Hawaiian monk seal t B D Guinea pig = B D Sheep = B D Gorilla = B D Bonobo = B D Chimp = B D Human = B D Marmoset = B D Opossum = B D Pig = B D Chinese pangolin = B D Rat = B D Shrew = B D Cow = B D Elephant = B D Hedgehog = B D Bushbaby = B D Tenrec = B D Squirrel = B D Tree shrew = B D Zebrafish = B D Malayan flying lemur = B D X. tropicalis = B D Chicken = B D Lamprey = Inserts between block 21 and 22 in window Beaver 557bp B D Pika 2161bp B D Dolphin 623bp B D Horse 604bp B D Dog 745bp B D Hawaiian monk seal 755bp Alignment block 22 of 76 in window, 37102983 - 37102983, 1 bps B D Mouse -c GCF_003668045 -t B D Rabbit -c B D Rhesus a- B D Tarsier a- B D Dog == B D Guinea pig == B D Sheep == B D Horse == B D Hawaiian monk seal == B D Gorilla == B D Bonobo == B D Chimp == B D Human == B D Marmoset == B D Opossum == B D Pig == B D Chinese pangolin == B D Rat == Beaver == B D Shrew == B D Cow == B D Elephant == B D Dolphin == B D Hedgehog == B D Pika == B D Bushbaby == B D Tenrec == B D Squirrel == B D Tree shrew == B D Zebrafish == B D Malayan flying lemur == B D X. tropicalis == B D Chicken == B D Lamprey == Inserts between block 22 and 23 in window B D Rabbit 1126bp Alignment block 23 of 76 in window, 37102984 - 37102984, 1 bps B D Mouse g GCF_003668045 g B D Rhesus g B D Tarsier g B D Dog = B D Guinea pig = B D Sheep = B D Horse = B D Hawaiian monk seal = B D Gorilla = B D Bonobo = B D Chimp = B D Human = B D Marmoset = B D Opossum = B D Pig = B D Chinese pangolin = B D Rat = Beaver = B D Shrew = B D Cow = B D Elephant = B D Dolphin = B D Hedgehog = B D Pika = B D Rabbit = B D Bushbaby = B D Tenrec = B D Squirrel = B D Tree shrew = B D Zebrafish = B D Malayan flying lemur = B D X. tropicalis = B D Chicken = B D Lamprey = Inserts between block 23 and 24 in window GCF_003668045 7339bp Alignment block 24 of 76 in window, 37102985 - 37102985, 1 bps B D Mouse t B D Rhesus c B D Tarsier t B D Dog = B D Guinea pig = B D Sheep = B D Horse = B D Hawaiian monk seal = B D Gorilla = B D Bonobo = B D Chimp = B D Human = B D Marmoset = B D Opossum = B D Pig = B D Chinese pangolin = B D Rat = Beaver = B D Shrew = B D Cow = B D Elephant = B D Dolphin = B D Hedgehog = B D Pika = GCF_003668045 = B D Rabbit = B D Bushbaby = B D Tenrec = B D Squirrel = B D Tree shrew = B D Zebrafish = B D Malayan flying lemur = B D X. tropicalis = B D Chicken = B D Lamprey = Inserts between block 24 and 25 in window B D Tarsier 1755bp Alignment block 25 of 76 in window, 37102986 - 37102994, 9 bps B D Mouse g---gtggtatt B D Rhesus gccaatggtgtt B D Dog ============ B D Guinea pig ============ B D Sheep ============ B D Horse ============ B D Hawaiian monk seal ============ B D Gorilla ============ B D Bonobo ============ B D Chimp ============ B D Human ============ B D Marmoset ============ B D Opossum ============ B D Pig ============ B D Chinese pangolin ============ B D Rat ============ Beaver ============ B D Shrew ============ B D Cow ============ B D Elephant ============ B D Dolphin ============ B D Hedgehog ============ B D Pika ============ B D Tarsier ============ GCF_003668045 ============ B D Rabbit ============ B D Bushbaby ============ B D Tenrec ============ B D Squirrel ============ B D Tree shrew ============ B D Zebrafish ============ B D Malayan flying lemur ============ B D X. tropicalis ============ B D Chicken ============ B D Lamprey ============ Inserts between block 25 and 26 in window B D Rhesus 809bp Alignment block 26 of 76 in window, 37102995 - 37103102, 108 bps B D Mouse gaggcaggctttccttatgaccttgagctcactctgcattttaggcaggccttgaacttttgatcctcct B D Dog ====================================================================== B D Rhesus ====================================================================== B D Guinea pig ====================================================================== B D Sheep ====================================================================== B D Horse ====================================================================== B D Hawaiian monk seal ====================================================================== B D Gorilla ====================================================================== B D Bonobo ====================================================================== B D Chimp ====================================================================== B D Human ====================================================================== B D Marmoset ====================================================================== B D Opossum ====================================================================== B D Pig ====================================================================== B D Chinese pangolin ====================================================================== B D Rat ====================================================================== Beaver ====================================================================== B D Shrew ====================================================================== B D Cow ====================================================================== B D Elephant ====================================================================== B D Dolphin ====================================================================== B D Hedgehog ====================================================================== B D Pika ====================================================================== B D Tarsier ====================================================================== GCF_003668045 ====================================================================== B D Rabbit ====================================================================== B D Bushbaby ====================================================================== B D Tenrec ====================================================================== B D Squirrel ====================================================================== B D Tree shrew ====================================================================== B D Zebrafish ====================================================================== B D Malayan flying lemur ====================================================================== B D X. tropicalis ====================================================================== B D Chicken ====================================================================== B D Lamprey ====================================================================== Mouse gcctcaccttcccatataggtctaggatagcagagcta Dog ====================================== Rhesus ====================================== Guinea pig ====================================== Sheep ====================================== Horse ====================================== Hawaiian monk seal ====================================== Gorilla ====================================== Bonobo ====================================== Chimp ====================================== Human ====================================== Marmoset ====================================== Opossum ====================================== Pig ====================================== Chinese pangolin ====================================== Rat ====================================== Beaver ====================================== Shrew ====================================== Cow ====================================== Elephant ====================================== Dolphin ====================================== Hedgehog ====================================== Pika ====================================== Tarsier ====================================== GCF_003668045 ====================================== Rabbit ====================================== Bushbaby ====================================== Tenrec ====================================== Squirrel ====================================== Tree shrew ====================================== Zebrafish ====================================== Malayan flying lemur ====================================== X. tropicalis ====================================== Chicken ====================================== Lamprey ====================================== Alignment block 27 of 76 in window, 37103103 - 37103121, 19 bps B D Mouse ctttgccaggcccaactct GCF_003668045 ctctacctggctcagtttt B D Dog =================== B D Rhesus =================== B D Guinea pig =================== B D Sheep =================== B D Horse =================== B D Hawaiian monk seal =================== B D Gorilla =================== B D Bonobo =================== B D Chimp =================== B D Human =================== B D Marmoset =================== B D Opossum =================== B D Pig =================== B D Chinese pangolin =================== B D Rat =================== Beaver =================== B D Shrew =================== B D Cow =================== B D Elephant =================== B D Dolphin =================== B D Hedgehog =================== B D Pika =================== B D Tarsier =================== B D Rabbit =================== B D Bushbaby =================== B D Tenrec =================== B D Squirrel =================== B D Tree shrew =================== B D Zebrafish =================== B D Malayan flying lemur =================== B D X. tropicalis =================== B D Chicken =================== B D Lamprey =================== Alignment block 28 of 76 in window, 37103122 - 37103123, 2 bps B D Mouse ac GCF_003668045 ac B D Human at B D Chimp at B D Bonobo at B D Gorilla at B D Marmoset ac B D Dog == B D Rhesus == B D Guinea pig == B D Sheep == B D Horse == B D Hawaiian monk seal == B D Opossum == B D Pig == B D Chinese pangolin == B D Rat == Beaver == B D Shrew == B D Cow == B D Elephant == B D Dolphin == B D Hedgehog == B D Pika == B D Tarsier == B D Rabbit == B D Bushbaby == B D Tenrec == B D Squirrel == B D Tree shrew == B D Zebrafish == B D Malayan flying lemur == B D X. tropicalis == B D Chicken == B D Lamprey == Alignment block 29 of 76 in window, 37103124 - 37103124, 1 bps B D Mouse a GCF_003668045 g Beaver a B D Human a B D Chimp a B D Bonobo a B D Gorilla a B D Rhesus a B D Marmoset a B D Bushbaby a B D Pig a B D Horse a B D Dog a B D Guinea pig = B D Sheep = B D Hawaiian monk seal = B D Opossum = B D Chinese pangolin = B D Rat = B D Shrew = B D Cow = B D Elephant = B D Dolphin = B D Hedgehog = B D Pika = B D Tarsier = B D Rabbit = B D Tenrec = B D Squirrel = B D Tree shrew = B D Zebrafish = B D Malayan flying lemur = B D X. tropicalis = B D Chicken = B D Lamprey = Alignment block 30 of 76 in window, 37103125 - 37103141, 17 bps B D Mouse tgtgattct--cagtaaat GCF_003668045 tgtgattct--tactaaat Beaver tgtgattct--ta--aaac B D Human tgtgcttcc--taataa-- B D Chimp tgtgcttcc--taataa-- B D Bonobo tgtgcttcc--taataa-- B D Gorilla tgtgcttcc--taataa-- B D Rhesus tgtgcttcc--tgataa-- B D Marmoset gatgtttct--taataa-- B D Bushbaby tgttattct--taaaaa-- B D Pig tgtgcttttaaaaaaaa-- B D Horse tgtgatttt--aaagaa-- B D Dog tgtgatttt--ttttta-- B D Hawaiian monk seal tgtga-ttt--ttttta-- B D Guinea pig =================== B D Sheep =================== B D Opossum =================== B D Chinese pangolin =================== B D Rat =================== B D Shrew =================== B D Cow =================== B D Elephant =================== B D Dolphin =================== B D Hedgehog =================== B D Pika =================== B D Tarsier =================== B D Rabbit =================== B D Tenrec =================== B D Squirrel =================== B D Tree shrew =================== B D Zebrafish =================== B D Malayan flying lemur =================== B D X. tropicalis =================== B D Chicken =================== B D Lamprey =================== Alignment block 31 of 76 in window, 37103142 - 37103142, 1 bps B D Mouse a GCF_003668045 g Beaver a B D Human a B D Chimp a B D Bonobo a B D Gorilla a B D Rhesus a B D Marmoset a B D Tarsier a B D Bushbaby a B D Pig a B D Horse t B D Dog a B D Hawaiian monk seal a B D Guinea pig = B D Sheep = B D Opossum = B D Chinese pangolin = B D Rat = B D Shrew = B D Cow = B D Elephant = B D Dolphin = B D Hedgehog = B D Pika = B D Rabbit = B D Tenrec = B D Squirrel = B D Tree shrew = B D Zebrafish = B D Malayan flying lemur = B D X. tropicalis = B D Chicken = B D Lamprey = Alignment block 32 of 76 in window, 37103143 - 37103152, 10 bps B D Mouse taacttggaa GCF_003668045 tagcttggaa Beaver tagcttggaa B D Squirrel tatcttggaa B D Human taacttggaa B D Chimp taacttggaa B D Bonobo taacttggaa B D Gorilla taacttggaa B D Rhesus tagcttggaa B D Marmoset tagcttggta B D Tarsier tagcttggaa B D Bushbaby cagtttggaa B D Pig atgcttggaa B D Horse ttacttggaa B D Dog ttgcttggaa B D Hawaiian monk seal ttgcttggaa B D Guinea pig ========== B D Sheep ========== B D Opossum ========== B D Chinese pangolin ========== B D Rat ========== B D Shrew ========== B D Cow ========== B D Elephant ========== B D Dolphin ========== B D Hedgehog ========== B D Pika ========== B D Rabbit ========== B D Tenrec ========== B D Tree shrew ========== B D Zebrafish ========== B D Malayan flying lemur ========== B D X. tropicalis ========== B D Chicken ========== B D Lamprey ========== Inserts between block 32 and 33 in window B D Squirrel 1bp B D Human 1bp B D Chimp 1bp B D Bonobo 1bp B D Gorilla 1bp B D Rhesus 1bp B D Marmoset 1bp B D Tarsier 1bp B D Bushbaby 1bp B D Pig 1bp B D Horse 1bp B D Dog 1bp B D Hawaiian monk seal 1bp Alignment block 33 of 76 in window, 37103153 - 37103209, 57 bps B D Mouse aaacata--acttgttcaggccattctttagtt------------ttattttgggtttttgttttgtatt GCF_003668045 aaa-ata--acttgttcagggcatactataaaa------------ctatttt---------------att Beaver aaatat---atatgtttaggtcacagtataata------------ctgtttc------------------ B D Squirrel aaatgta--atttgttcagatcacactataa---------------tgtttc---------------att B D Human aaatgta--atttgttcaagtcacactataata------------ttgtttc---------------att B D Chimp aaatgta--atttgttcaagtcacactataata------------ctgtttc---------------att B D Bonobo aaatgta--atttgttcaagtcacactataata------------ctgtttc---------------att B D Gorilla aaatgta--atttgttcaagtcacactataata------------ctgtttc---------------att B D Rhesus aaatgta--atttgttcaagtcacactataata------------ctgtttc---------------att B D Marmoset aaatgta--atttgttcaggtcacactataata------------ctgtttc---------------att B D Tarsier aagtgca--atttgttcaggtcccactataaca------------ttgtctc---------------aat B D Bushbaby aagtg----attttttca-----cacaaaaata------------ttgtttc----------------tt B D Pig agaggta--atttgttcaggtcacactataatcatgct-----------ttt---------------ttt B D Dolphin -----aa--atataatcaagtcacactataattacactataataactgcttc---------------att B D Horse agatacgtaatttgttcaggtcacactagaata------------ttgcttc---------------act B D Dog acatgct--atttgtttaggtcaccctataatt---------------cttc---------------att B D Hawaiian monk seal acatgct--atttgtttaggtcgccctataata---------------cttc---------------att B D Guinea pig ====================================================================== B D Sheep ====================================================================== B D Opossum ====================================================================== B D Chinese pangolin ====================================================================== B D Rat ====================================================================== B D Shrew ====================================================================== B D Cow ====================================================================== B D Elephant ====================================================================== B D Hedgehog ====================================================================== B D Pika ====================================================================== B D Rabbit ====================================================================== B D Tenrec ====================================================================== B D Tree shrew ====================================================================== B D Zebrafish ====================================================================== B D Malayan flying lemur ====================================================================== B D X. tropicalis ====================================================================== B D Chicken ====================================================================== B D Lamprey ====================================================================== Mouse t GCF_003668045 t Beaver - Squirrel t Human t Chimp t Bonobo t Gorilla t Rhesus t Marmoset t Tarsier t Bushbaby t Pig t Dolphin t Horse t Dog t Hawaiian monk seal t Guinea pig = Sheep = Opossum = Chinese pangolin = Rat = Shrew = Cow = Elephant = Hedgehog = Pika = Rabbit = Tenrec = Tree shrew = Zebrafish = Malayan flying lemur = X. tropicalis = Chicken = Lamprey = Alignment block 34 of 76 in window, 37103210 - 37103267, 58 bps B D Mouse t-ttaatgaagaaaaa--atgttaaatttaccttgc-agat----------------------------- GCF_003668045 t-atcatgaataaaa----tgctaaatttaccttgc-agatatatcaaca-------------------- Beaver -----------aaaa----caggaaatttgtcttgc-agatacttcaaaa-------------------- B D Squirrel t-ttcatgaagaaatt--atgcaaaatttgtcctat-agatatttcagga-------------------- B D Human tcttcatgaggaaaaa--atataaaatttgtcttga-----cttttaaaa-------------------- B D Chimp tcttcatgaggaaaaa--atataaaatttgtcttga-----cttttaaaa-------------------- B D Bonobo tcttcatgaggaaaaa--atataaaatttgtcttga-----cttttaaaa-------------------- B D Gorilla tcttcatgaggaaaaa--atataaaatttgtcttga-----cttttaaaa-------------------- B D Rhesus tcttcatgaggaaaaa--atatagaatttgtcctga-agatattttaaaa-------------------- B D Marmoset tcttcatgtgg-aaaa--atataaaatttgt----------actttaaaa-------------------- B D Tarsier ttttcatgaagaaaaa--gtataaaatttgtcctgc-agatatttcagaa-------------------- B D Bushbaby ttttcataaagaaaaac-atataacatttgtcttgt-agttatttcaaaac------------------- B D Pig ttttcatgaagaaaaa------------caatttgt-aaatatttcaaaatgcccttatgaggaatgctt B D Dolphin tttccaagaagaaagaa-atataaaatttatcttgt-agatatttcaaaatagcttcatgatgaatgttt B D Horse ttttcatgaagaaagaa-atgtaaaatttgccttac-agatatttcaaagtagcctcatgataaatgttt B D Dog tcctaatgaacaaag---ctataaaatttttctagc-aggtatttcaaaatagcctcatgataaatgttt B D Hawaiian monk seal tcctagtgagcaaaa---atacaaaatttgtctagc-aggtatttcaagatggcctcatgatgaatgttt B D Elephant -tttaatgaagaaaaaatacataaaatttgtcttgggaggtatttcaaaatagcctc------------- B D Guinea pig ====================================================================== B D Sheep ====================================================================== B D Opossum ====================================================================== B D Chinese pangolin ====================================================================== B D Rat ====================================================================== B D Shrew ====================================================================== B D Cow ====================================================================== B D Hedgehog ====================================================================== B D Pika ====================================================================== B D Rabbit ====================================================================== B D Tenrec ====================================================================== B D Tree shrew ====================================================================== B D Zebrafish ====================================================================== B D Malayan flying lemur ====================================================================== B D X. tropicalis ====================================================================== B D Chicken ====================================================================== B D Lamprey ====================================================================== Mouse ----------------------tcctcaaaacaaccatttggg- GCF_003668045 --ctaaaaga------------ttatcaaaaagactatgttga- Beaver --gtaaaaga------------ttatcaag--gatcatattaa- Squirrel --ataaaaa-----------------------gaacacattg-- Human --ataaaga-------------ttatcaaac-gaccatgttga- Chimp --ataaaga-------------ttatcaaac-gaccatgttga- Bonobo --ataaaga-------------ttatcaaac-gaccatgttga- Gorilla --ataaaga-------------ttatcaaac-gaccatgttga- Rhesus --ataaaaa-------------ttatcaaac-gaccatgttga- Marmoset --ataaaaga-----------tttatcaaaa-gactatgttga- Tarsier --at-aaga-------------taatcaaaa-gaccatgttga- Bushbaby --at------------------ttac-------------ttgg- Pig aagtgaagaaaa-------agattaccaaaa-gataaagtgga- Dolphin gagtgaagaaaacaaagacagattatcaaaa-gaccatgtgga- Horse gagtgaagaaaa---------------caaa-gattatcaaaa- Dog gagtgaagaa------------------aca-gattatcaaaa- Hawaiian monk seal aagtgaagtt------------------tta-ga-tatcaaaa- Elephant --ttgaaaatgt----------ttcttgagt-gaagaaattaga Guinea pig ============================================ Sheep ============================================ Opossum ============================================ Chinese pangolin ============================================ Rat ============================================ Shrew ============================================ Cow ============================================ Hedgehog ============================================ Pika ============================================ Rabbit ============================================ Tenrec ============================================ Tree shrew ============================================ Zebrafish ============================================ Malayan flying lemur ============================================ X. tropicalis ============================================ Chicken ============================================ Lamprey ============================================ Inserts between block 34 and 35 in window B D Bushbaby 947bp Alignment block 35 of 76 in window, 37103268 - 37103331, 64 bps B D Mouse aagagtac-----------------aaagttaacaagttaacatagattggactggtcttccattaatta GCF_003668045 aatagtac-----------------aaagctaaca---taaca--gattggactactcttccatta---- Beaver tagaatgt-----------------gaagttagta---cagcatagattgaagttctctttcactg---- B D Squirrel -------------------------aaagttagca---tagcataaattgaattgctctttcatta---- B D Human aagagtac-----------------aaaggtagca---tagcatacattgaaatgctcttttatta---- B D Chimp aagagtac-----------------aaaggtagca---tagcatacattgaaatgctcttttatta---- B D Bonobo aagagtac-----------------aaaggtagca---tagcatacattgaaatgctcttttatta---- B D Gorilla aagagtac-----------------aaaggtagca---tagcatacattgaaatgctcttttatta---- B D Rhesus aagagtac-----------------aaaggtagca---tagcatacattgaaatgctgttgtatta---- B D Marmoset aagagtgc-----------------acaggtagca---tagcatagactgaaatgctcttttatta---- B D Tarsier aaga-------------------------atagca---t-gcatagactgaactgctctt-tatta---- B D Pig aagagtac-----------------agaagtagcc---ta-cataaattgaattgctcttctatta---- B D Dolphin aagagtgt-----------------aaatatagca---ta-cataagttgagttgctcttccatta---- B D Horse gacaatgttgaaaga-------gtgcaaagtagca---tagcatagactg---------------g---- B D Dog atcaatgc-----------------aaacgtagca---tagcatagactgaattgctgttccatta---- B D Hawaiian monk seal aacaatgc-----------------aaaagtagcg---tagcatagattgaattgctgctccatta---- B D Elephant aagattatcaaaagaccatgttaagagaggtggca---gagca--gactgaattgctcttctgtta---- B D Guinea pig ====================================================================== B D Sheep ====================================================================== B D Opossum ====================================================================== B D Chinese pangolin ====================================================================== B D Rat ====================================================================== B D Shrew ====================================================================== B D Cow ====================================================================== B D Hedgehog ====================================================================== B D Pika ====================================================================== B D Rabbit ====================================================================== B D Bushbaby ====================================================================== B D Tenrec ====================================================================== B D Tree shrew ====================================================================== B D Zebrafish ====================================================================== B D Malayan flying lemur ====================================================================== B D X. tropicalis ====================================================================== B D Chicken ====================================================================== B D Lamprey ====================================================================== Mouse ctcttcatcag GCF_003668045 ctgttgatcaa Beaver cttttcagaag Squirrel ttattcagtca Human atattcaattg Chimp atattcaattg Bonobo atattcaattg Gorilla atattcaattg Rhesus atattcaatcg Marmoset ataattaattg Tarsier ctatccagtca Pig ctattcaatgt Dolphin ctatttaatct Horse caatcta---- Dog gaattca-tct Hawaiian monk seal ctattcagtct Elephant ctattcagtct Guinea pig =========== Sheep =========== Opossum =========== Chinese pangolin =========== Rat =========== Shrew =========== Cow =========== Hedgehog =========== Pika =========== Rabbit =========== Bushbaby =========== Tenrec =========== Tree shrew =========== Zebrafish =========== Malayan flying lemur =========== X. tropicalis =========== Chicken =========== Lamprey =========== Alignment block 36 of 76 in window, 37103332 - 37103382, 51 bps B D Mouse aaatataccaa-aaatt--ggacaagagtaaaa--tctatagtgatggtgggaaaa- GCF_003668045 aaatgtgccaa-aaatc--aagtgagagtaaaa--tctatagtgatggtgggaaga- Beaver agtgatgccaa-aaacttagggagagagtaaaaactcaatagtgatagtgggaaga- B D Squirrel agatgtgccaa-aattc-agtgagacagtaaaa--tcaataa-ggtgcttggaagc- B D Human agatgtgccca-aaattcagtgagagagtaaaa--tcaataatgatggctgggaga- B D Chimp agatgtgccca-aaattcagtgagagagtaaaa--ccaataatgatggctgggaga- B D Bonobo agatgtgccca-aaattcagtgagagagtaaaa--ccaataatgatggctgggaga- B D Gorilla agatgtgccca-aaattcagtgagagagtaaaa--tcaataatgatggctgggaga- B D Rhesus agatgtgccca-aaattcagtgagagagtaaaa--tcaataatgatggctggtaga- B D Marmoset agatgtgccca-aaattcagtgagacagtaaaa--tc---aatgatgtctgggaga- B D Tarsier agatgtgccaataaattcagtgagagagtaaaa--tcattaataatggctaggaga- B D Pig agaagtggcaa-aaattcagt--gaaagtgaaa--tc---agtgatggctgggaga- B D Dolphin agatgtgccaa-aaattcagt--gagagtgaaa--gcaataatgatggctgggaga- B D Horse gaatgtgctaa-aaattcagt--gagagtaaag--tcaataatgatggctggaaga- B D Chinese pangolin agatgtaccaa-aaattcagt--aagagtaaaa--ccaatactgatggctgagaga- B D Dog agatgtgccaa-aaatcc--t--gagagtaaaa--gcagtaatgatggctgg-agg- B D Hawaiian monk seal agatgtgccaa-aagtccagt--gagagtaaaa--tcagtaatgatgactggaaga- B D Elephant ggatgtgctga-aaatttagtggtaaagtaaaa--tcaataatgatggctgggagaa B D Guinea pig ========================================================= B D Sheep ========================================================= B D Opossum ========================================================= B D Rat ========================================================= B D Shrew ========================================================= B D Cow ========================================================= B D Hedgehog ========================================================= B D Pika ========================================================= B D Rabbit ========================================================= B D Bushbaby ========================================================= B D Tenrec ========================================================= B D Tree shrew ========================================================= B D Zebrafish ========================================================= B D Malayan flying lemur ========================================================= B D X. tropicalis ========================================================= B D Chicken ========================================================= B D Lamprey ========================================================= Inserts between block 36 and 37 in window B D Pig 4bp B D Dolphin 86bp Alignment block 37 of 76 in window, 37103383 - 37103383, 1 bps B D Mouse g GCF_003668045 g B D Squirrel a B D Human a B D Chimp a B D Bonobo a B D Gorilla a B D Rhesus a B D Marmoset a B D Tarsier a B D Pig a B D Horse a B D Chinese pangolin a B D Dog a B D Hawaiian monk seal a B D Elephant a B D Guinea pig = B D Sheep = B D Opossum = B D Rat = Beaver - B D Shrew = B D Cow = B D Dolphin = B D Hedgehog = B D Pika = B D Rabbit = B D Bushbaby = B D Tenrec = B D Tree shrew = B D Zebrafish = B D Malayan flying lemur = B D X. tropicalis = B D Chicken = B D Lamprey = Inserts between block 37 and 38 in window B D Human 1bp B D Chimp 1bp B D Bonobo 1bp B D Gorilla 1bp B D Rhesus 137bp B D Marmoset 5bp B D Tarsier 1bp B D Horse 78bp B D Chinese pangolin 1bp B D Dog 5bp B D Hawaiian monk seal 5bp B D Elephant 58bp Alignment block 38 of 76 in window, 37103384 - 37103384, 1 bps B D Mouse t GCF_003668045 t B D Squirrel g B D Human t B D Chimp t B D Bonobo t B D Gorilla t B D Marmoset t B D Tarsier t B D Pig t B D Chinese pangolin t B D Dog t B D Hawaiian monk seal t B D Rhesus = B D Guinea pig = B D Sheep = B D Horse = B D Opossum = B D Rat = Beaver - B D Shrew = B D Cow = B D Elephant = B D Dolphin = B D Hedgehog = B D Pika = B D Rabbit = B D Bushbaby = B D Tenrec = B D Tree shrew = B D Zebrafish = B D Malayan flying lemur = B D X. tropicalis = B D Chicken = B D Lamprey = Inserts between block 38 and 39 in window B D Human 143bp B D Chimp 143bp B D Bonobo 143bp B D Gorilla 143bp B D Tarsier 2bp Alignment block 39 of 76 in window, 37103385 - 37103385, 1 bps B D Mouse -a GCF_003668045 -a B D Squirrel -t B D Marmoset -a B D Tarsier -a B D Pig g- B D Chinese pangolin c- B D Dog g- B D Hawaiian monk seal g- B D Rhesus == B D Guinea pig == B D Sheep == B D Horse == B D Gorilla == B D Bonobo == B D Chimp == B D Human == B D Opossum == B D Rat == Beaver -- B D Shrew == B D Cow == B D Elephant == B D Dolphin == B D Hedgehog == B D Pika == B D Rabbit == B D Bushbaby == B D Tenrec == B D Tree shrew == B D Zebrafish == B D Malayan flying lemur == B D X. tropicalis == B D Chicken == B D Lamprey == Inserts between block 39 and 40 in window B D Pig 2bp B D Chinese pangolin 88bp B D Dog 2bp B D Hawaiian monk seal 2bp Alignment block 40 of 76 in window, 37103386 - 37103390, 5 bps B D Mouse a--gatc GCF_003668045 a--tatc B D Squirrel c--tgtc B D Marmoset t--gacc B D Tarsier tcagacc B D Pig --acatt B D Dog --atact B D Hawaiian monk seal --acatt B D Rhesus ======= B D Guinea pig ======= B D Sheep ======= B D Horse ======= B D Gorilla ======= B D Bonobo ======= B D Chimp ======= B D Human ======= B D Opossum ======= B D Chinese pangolin ======= B D Rat ======= Beaver ------- B D Shrew ======= B D Cow ======= B D Elephant ======= B D Dolphin ======= B D Hedgehog ======= B D Pika ======= B D Rabbit ======= B D Bushbaby ======= B D Tenrec ======= B D Tree shrew ======= B D Zebrafish ======= B D Malayan flying lemur ======= B D X. tropicalis ======= B D Chicken ======= B D Lamprey ======= Inserts between block 40 and 41 in window B D Marmoset 59bp B D Tarsier 7bp B D Dog 5bp B D Hawaiian monk seal 5bp Alignment block 41 of 76 in window, 37103391 - 37103405, 15 bps B D Mouse aagctgccacacatc GCF_003668045 aagcctcaattcaag B D Squirrel agacctc-------- B D Tarsier aaacttgaagtaaaa B D Pig caagtaaaatgat-- B D Dog aaacttaaatgac-- B D Hawaiian monk seal aaacttaaatgac-- B D Rhesus =============== B D Guinea pig =============== B D Sheep =============== B D Horse =============== B D Gorilla =============== B D Bonobo =============== B D Chimp =============== B D Human =============== B D Marmoset =============== B D Opossum =============== B D Chinese pangolin =============== B D Rat =============== Beaver --------------- B D Shrew =============== B D Cow =============== B D Elephant =============== B D Dolphin =============== B D Hedgehog =============== B D Pika =============== B D Rabbit =============== B D Bushbaby =============== B D Tenrec =============== B D Tree shrew =============== B D Zebrafish =============== B D Malayan flying lemur =============== B D X. tropicalis =============== B D Chicken =============== B D Lamprey =============== Inserts between block 41 and 42 in window B D Squirrel 54bp B D Tarsier 4bp Alignment block 42 of 76 in window, 37103406 - 37103428, 23 bps B D Mouse tcacgccttgccctggacagcac GCF_003668045 ctcctacatatctcaaaaagcac Beaver --------tatatcaggcagtgt B D Tarsier tgaagccatataatgg---gcat B D Pig tgaaagcatataataggaaagat B D Dog tgaaactatataataggaaatat B D Hawaiian monk seal taaaaccatataataggaaatat B D Rhesus ======================= B D Guinea pig ======================= B D Sheep ======================= B D Horse ======================= B D Gorilla ======================= B D Bonobo ======================= B D Chimp ======================= B D Human ======================= B D Marmoset ======================= B D Opossum ======================= B D Chinese pangolin ======================= B D Rat ======================= B D Shrew ======================= B D Cow ======================= B D Elephant ======================= B D Dolphin ======================= B D Hedgehog ======================= B D Pika ======================= B D Rabbit ======================= B D Bushbaby ======================= B D Tenrec ======================= B D Squirrel ======================= B D Tree shrew ======================= B D Zebrafish ======================= B D Malayan flying lemur ======================= B D X. tropicalis ======================= B D Chicken ======================= B D Lamprey ======================= Alignment block 43 of 76 in window, 37103429 - 37103437, 9 bps B D Mouse tgtctgtcg GCF_003668045 tgtgtgtcg Beaver tatatatta B D Tarsier tatatataa B D Pig tatgtataa B D Dog tatatacaa B D Hawaiian monk seal tatatataa B D Elephant tttttgtag B D Rhesus ========= B D Guinea pig ========= B D Sheep ========= B D Horse ========= B D Gorilla ========= B D Bonobo ========= B D Chimp ========= B D Human ========= B D Marmoset ========= B D Opossum ========= B D Chinese pangolin ========= B D Rat ========= B D Shrew ========= B D Cow ========= B D Dolphin ========= B D Hedgehog ========= B D Pika ========= B D Rabbit ========= B D Bushbaby ========= B D Tenrec ========= B D Squirrel ========= B D Tree shrew ========= B D Zebrafish ========= B D Malayan flying lemur ========= B D X. tropicalis ========= B D Chicken ========= B D Lamprey ========= Inserts between block 43 and 44 in window B D Tarsier 10bp B D Pig 9bp B D Dog 4bp B D Hawaiian monk seal 4bp Alignment block 44 of 76 in window, 37103438 - 37103453, 16 bps B D Mouse agccc-------------acctttcctgt GCF_003668045 cacctacccaaagcatgaacccttcatgt Beaver tgtgt-----aagtatagatc--tcata- B D Squirrel --------gcaaatccagtcttcacatg- B D Marmoset -----------gataaaatcttcacata- B D Tarsier -----------gatccagtcttcatata- B D Pig ------------atctagt---------- B D Dog ------------atcctgtcttcact--- B D Hawaiian monk seal ------------atccagtcttgact--- B D Elephant ------------gtccagtctttaca--- B D Rhesus ============================= B D Guinea pig ============================= B D Sheep ============================= B D Horse ============================= B D Gorilla ============================= B D Bonobo ============================= B D Chimp ============================= B D Human ============================= B D Opossum ============================= B D Chinese pangolin ============================= B D Rat ============================= B D Shrew ============================= B D Cow ============================= B D Dolphin ============================= B D Hedgehog ============================= B D Pika ============================= B D Rabbit ============================= B D Bushbaby ============================= B D Tenrec ============================= B D Tree shrew ============================= B D Zebrafish ============================= B D Malayan flying lemur ============================= B D X. tropicalis ============================= B D Chicken ============================= B D Lamprey ============================= Alignment block 45 of 76 in window, 37103454 - 37103456, 3 bps B D Mouse cct GCF_003668045 cct Beaver --t B D Squirrel --c B D Marmoset --c B D Tarsier --c B D Pig ctt B D Horse --t B D Dog --t B D Hawaiian monk seal --t B D Elephant cat B D Rhesus === B D Guinea pig === B D Sheep === B D Gorilla === B D Bonobo === B D Chimp === B D Human === B D Opossum === B D Chinese pangolin === B D Rat === B D Shrew === B D Cow === B D Dolphin === B D Hedgehog === B D Pika === B D Rabbit === B D Bushbaby === B D Tenrec === B D Tree shrew === B D Zebrafish === B D Malayan flying lemur === B D X. tropicalis === B D Chicken === B D Lamprey === Inserts between block 45 and 46 in window B D Pig 7bp Alignment block 46 of 76 in window, 37103457 - 37103457, 1 bps B D Mouse a GCF_003668045 a Beaver a B D Squirrel a B D Marmoset a B D Tarsier a B D Pig a B D Dolphin a B D Horse a B D Dog a B D Hawaiian monk seal a B D Elephant a B D Rhesus = B D Guinea pig = B D Sheep = B D Gorilla = B D Bonobo = B D Chimp = B D Human = B D Opossum = B D Chinese pangolin = B D Rat = B D Shrew = B D Cow = B D Hedgehog = B D Pika = B D Rabbit = B D Bushbaby = B D Tenrec = B D Tree shrew = B D Zebrafish = B D Malayan flying lemur = B D X. tropicalis = B D Chicken = B D Lamprey = Inserts between block 46 and 47 in window B D Horse 2bp B D Dog 2bp B D Hawaiian monk seal 2bp Alignment block 47 of 76 in window, 37103458 - 37103504, 47 bps B D Mouse gcactgaagt----gcagcagtcactagttacctt---gatgctcatgctgtgt GCF_003668045 gcactgaagt----gtagtagccactagttaccct------------------- Beaver gcaccaacataaccatagttactgctaattttttt---gtttcttcttttgcct B D Squirrel ccaccaatgt----gcaccagtaactggtaatcctttcgtttttccctctgatt B D Marmoset gccccaacag----ataccagtcactggtaatccttttgtttttgtgc------ B D Tarsier gcaataacat----acaccagtcactggtaatccttttgtttttttct------ B D Pig gcaacaacat----atattagttactgttaatcctcttgtctttctctctgcct B D Dolphin gcaacaaaat----atacca-tcactgttaatcctcttgtttttctctctgcct B D Horse gcaccaacat----gtatcagtcactagtaatcctcttgtttttctctctgcct B D Chinese pangolin gtactaacat----atattagtcactggtaatcctcttgtttttatctctgcct B D Dog gcaccaacat----acaccagtccctagtaatccccttgtttt--tctctgttt B D Hawaiian monk seal gcaccaacat----ataccagtccctggtaatcctcttgtttttctctctgcct B D Elephant gcagcaacat----ataccagttcctggtaatccttttgtttttccctctgcct B D Rhesus ====================================================== B D Guinea pig ====================================================== B D Sheep ====================================================== B D Gorilla ====================================================== B D Bonobo ====================================================== B D Chimp ====================================================== B D Human ====================================================== B D Opossum ====================================================== B D Rat ====================================================== B D Shrew ====================================================== B D Cow ====================================================== B D Hedgehog ====================================================== B D Pika ====================================================== B D Rabbit ====================================================== B D Bushbaby ====================================================== B D Tenrec ====================================================== B D Tree shrew ====================================================== B D Zebrafish ====================================================== B D Malayan flying lemur ====================================================== B D X. tropicalis ====================================================== B D Chicken ====================================================== B D Lamprey ====================================================== Inserts between block 47 and 48 in window B D Marmoset 1bp B D Tarsier 5bp Alignment block 48 of 76 in window, 37103505 - 37103573, 69 bps B D Mouse tca---gtatctatac---aaaatta---ta-caaagcaagctttgtacaaacc----aacgttcca-ag GCF_003668045 ----------------------------------------gctctgtgcaaacc----aacatt-ta-gg Beaver taat--aaatttaaactt-aatgtag---aa-gaaaacagattctatataaaac----agaattctatag B D Squirrel tg----gtatttaaattt-tagatag---cg-taaaacagat----tataaaacttgtgaagtt-ca-ga B D Human ---ttaatatttaaactt-aatgtag---aa-aaaaacagattcaagacaaacc-tgtgaagtt-ca-ga B D Chimp ---ttaatatttaaactt-aatgtag---aa-aaaaacagattcaagacaaacc-tgtgaagtt-ca-ga B D Bonobo ---ttaatatttaaactt-aatgtag---aa-aaaaacagattcaagacaaacc-tgtgaagtt-ca-ga B D Gorilla ---ttaatatttaaactt-aatgtag---aa-aaaaacagattcaagacaaacc-tgtgaagtt-ca-ga B D Rhesus ---ttaatatttaaactt-aatgtag---aa-aaaaatagattcaagataaacc-tgtgaagtt-ca-ga B D Marmoset ---ttaatatttaaactt-aatgtgg---ag-aaaaacagatttaacataaacc-tgtaaagtt-ca-ga B D Tarsier ---ttaatatttaaactt-aatgtag---aagaaaaacagattctagataaacc-tgtgacatt-ca-ca B D Pig ----tagtatttaaactt-a--------------------attctagataaacc-tatgaagtt-ca-ga B D Dolphin ----taatatttaaactt-aatgtgg---ag-aaacacagattctagataaagc-tgtgaagtg-ca-ga B D Horse ----taatatttaaactt-aatgtgg---ag-aaaaacagattctagataaacc-tgtgaagtt-ca-ga B D Chinese pangolin ----tcacatttaaacttaaatgtgg---ag-gaaaac--attctagataaact-ggt-aattg-ta-ga B D Dog ----taatagttaaactt-cacgtggaaaaa-aaaaacagactctaagaaaacc-tgcgaagtt-ca-ga B D Hawaiian monk seal ----taatatttaaac---aatgtgg--aaa-aataacagactctaagtaaacc-tgtgaagtt-ca-ga B D Elephant ----taatatctaaactt-aatgtgg---ac-aaaaacagattctaagtaaacc---------t-gt-aa B D Guinea pig ====================================================================== B D Sheep ====================================================================== B D Opossum ====================================================================== B D Rat ====================================================================== B D Shrew ====================================================================== B D Cow ====================================================================== B D Hedgehog ====================================================================== B D Pika ====================================================================== B D Rabbit ====================================================================== B D Bushbaby ====================================================================== B D Tenrec ====================================================================== B D Tree shrew ====================================================================== B D Zebrafish ====================================================================== B D Malayan flying lemur ====================================================================== B D X. tropicalis ====================================================================== B D Chicken ====================================================================== B D Lamprey ====================================================================== Mouse cttcattttcagtc GCF_003668045 cttcatttccagtc Beaver attcttttctagtc Squirrel atgaatttctagtc Human attattttctagtc Chimp attattttctagtc Bonobo attattttctagtc Gorilla attattttctagtc Rhesus attattttctagtc Marmoset attattttctagtc Tarsier gttactttctaatc Pig attcttttcttatc Dolphin attcttttctagtc Horse attcttttctagtc Chinese pangolin attcttttctagtc Dog attcttttctagtc Hawaiian monk seal attcttttctaggt Elephant attcttctctagtc Guinea pig ============== Sheep ============== Opossum ============== Rat ============== Shrew ============== Cow ============== Hedgehog ============== Pika ============== Rabbit ============== Bushbaby ============== Tenrec ============== Tree shrew ============== Zebrafish ============== Malayan flying lemur ============== X. tropicalis ============== Chicken ============== Lamprey ============== Inserts between block 48 and 49 in window B D Hawaiian monk seal 9bp Alignment block 49 of 76 in window, 37103574 - 37103602, 29 bps B D Mouse tgcccatatgtgagagc-----ccatatttatgt- GCF_003668045 tgcccatgtctg-------------cacttattt- Beaver ttcctagatttgaaacc--ctgccagatttattt- B D Squirrel tacctagatttaaaagc--ctgccaaacttatgt- B D Human tacctatatttgaaaac--ctgacaaatttgttt- B D Chimp tacctatatttgaaaac--ctgacaaatttgttt- B D Bonobo tacctatatttgaaaac--ctgacaaatttgttt- B D Gorilla tacctatatttgaaaac--ctgacaaatttgttt- B D Rhesus tacctatatttgaaaac--ctgacaaatttgttt- B D Marmoset tacctgtatttgaaaac--ctggcaaatttgttt- B D Tarsier tacctagatgtgaaagt--ctgctgga----ttt- B D Pig tacctagacatgaatgc--ctgccagatttcttt- B D Dolphin tacctaggtatgaatgc--ctgccagatttcttt- B D Sheep tacctaaatatgaatgc--ctgccagatttcttt- B D Horse taccgagatatgaaatc--ctgccagatttcttt- B D Chinese pangolin tacctagttatgaaagc--ctgctggatttcttt- B D Dog tatgtctatataaaaac--ctgccagatttcttt- B D Hawaiian monk seal tatgtctatataaaagc--ctgccagatttcttt- B D Elephant ttcctcgatttgaaaaaggctgccaaattttctca B D Guinea pig =================================== B D Opossum =================================== B D Rat =================================== B D Shrew =================================== B D Cow =================================== B D Hedgehog =================================== B D Pika =================================== B D Rabbit =================================== B D Bushbaby =================================== B D Tenrec =================================== B D Tree shrew =================================== B D Zebrafish =================================== B D Malayan flying lemur =================================== B D X. tropicalis =================================== B D Chicken =================================== B D Lamprey =================================== Alignment block 50 of 76 in window, 37103603 - 37103641, 39 bps B D Mouse ctctcaaatatattatgaaacc-cttgacattttgtgaaa GCF_003668045 ctcttagatgttatataaaaca-tttaacatttcataaaa Beaver ccct--gatattatgtgaaacc-tatgacattttgt-aac B D Squirrel ctctcaggtgctatgtgaaaccttttggcatttgatgaaa B D Human ctcttgggtatgatgtgaaaca-tttgtcattttatgaaa B D Chimp ctcttgggtatgatgtgaaaca-tttgtcattttatgaaa B D Bonobo ctcttgggtatgatgtgaaaca-tttgtcattttatgaaa B D Gorilla ctcttggttatgatgtgaaaca-tttgtcattttatgaaa B D Rhesus ctcttgggtatgatgtgaaaca-tttgtcattttatgaaa B D Marmoset ctctcaggtatgttgtgaaaca-tttgtcattttttgaag B D Tarsier ctcttcaatattatatgagaac-tttgtcattttatgaaa B D Pig ctctcaggtattatgtgaaacc-tttatcattttatggaa B D Dolphin ccctcaggtattatgtggaacc-tttgtcactttatgaaa B D Sheep tcctcagaaattatgtagaacc-tttgtcattttatgaaa B D Horse ctctcaggtattatgtgaagcc-tttgtcattttatgaaa B D Chinese pangolin ccctcaggtattatatgaaacc-tctgtaattttatgatg B D Dog ctcgcagttatt-tgtgaaatc-tttgtaattttatgaaa B D Hawaiian monk seal cttgcagttattatgtgaagtc-tttgtcattttatgaaa B D Elephant acttcagatattatgtgaaacc-tttgctattttatgaaa B D Tenrec cttccagatattctatgaaacc-tttgcaatcttgtgaaa B D Guinea pig ======================================== B D Opossum ======================================== B D Rat ======================================== B D Shrew ======================================== B D Cow ======================================== B D Hedgehog ======================================== B D Pika ======================================== B D Rabbit ======================================== B D Bushbaby ======================================== B D Tree shrew ======================================== B D Zebrafish ======================================== B D Malayan flying lemur ======================================== B D X. tropicalis ======================================== B D Chicken ======================================== B D Lamprey ======================================== Inserts between block 50 and 51 in window B D Pig 405bp Alignment block 51 of 76 in window, 37103642 - 37103645, 4 bps B D Mouse tatt GCF_003668045 tatt Beaver tatt B D Squirrel tatt B D Human tagt B D Chimp tagt B D Bonobo tagt B D Gorilla tagt B D Rhesus tagt B D Marmoset tact B D Tarsier tatt B D Dolphin tatt B D Sheep tact B D Horse tatt B D Chinese pangolin tatt B D Dog tatt B D Hawaiian monk seal tact B D Elephant tatt B D Tenrec tatt B D Guinea pig ==== B D Opossum ==== B D Pig ==== B D Rat ==== B D Shrew ==== B D Cow ==== B D Hedgehog ==== B D Pika ==== B D Rabbit ==== B D Bushbaby ==== B D Tree shrew ==== B D Zebrafish ==== B D Malayan flying lemur ==== B D X. tropicalis ==== B D Chicken ==== B D Lamprey ==== Inserts between block 51 and 52 in window B D Chimp 68bp Alignment block 52 of 76 in window, 37103646 - 37103646, 1 bps B D Mouse g GCF_003668045 g Beaver g B D Squirrel g B D Human g B D Bonobo g B D Gorilla g B D Rhesus g B D Marmoset g B D Tarsier g B D Dolphin g B D Sheep g B D Horse g B D Chinese pangolin g B D Dog g B D Hawaiian monk seal g B D Elephant g B D Tenrec g B D Guinea pig = B D Chimp = B D Opossum = B D Pig = B D Rat = B D Shrew = B D Cow = B D Hedgehog = B D Pika = B D Rabbit = B D Bushbaby = B D Tree shrew = B D Zebrafish = B D Malayan flying lemur = B D X. tropicalis = B D Chicken = B D Lamprey = Inserts between block 52 and 53 in window B D Hawaiian monk seal 506bp B D Tenrec 1499bp Alignment block 53 of 76 in window, 37103647 - 37103647, 1 bps B D Mouse c GCF_003668045 t Beaver c B D Human t B D Bonobo t B D Gorilla t B D Rhesus t B D Marmoset t B D Tarsier t B D Elephant t B D Dog - B D Guinea pig = B D Sheep - B D Horse - B D Hawaiian monk seal = B D Chimp = B D Opossum = B D Pig = B D Chinese pangolin - B D Rat = B D Shrew = B D Cow = B D Dolphin - B D Hedgehog = B D Pika = B D Rabbit = B D Bushbaby = B D Tenrec = B D Squirrel - B D Tree shrew = B D Zebrafish = B D Malayan flying lemur = B D X. tropicalis = B D Chicken = B D Lamprey = Inserts between block 53 and 54 in window B D Human 66bp B D Bonobo 66bp B D Gorilla 66bp B D Rhesus 66bp Alignment block 54 of 76 in window, 37103648 - 37103648, 1 bps B D Mouse -a GCF_003668045 -a Beaver -c B D Elephant g- B D Dog -- B D Rhesus == B D Guinea pig == B D Sheep -- B D Horse -- B D Hawaiian monk seal == B D Gorilla == B D Bonobo == B D Chimp == B D Human == B D Marmoset -- B D Opossum == B D Pig == B D Chinese pangolin -- B D Rat == B D Shrew == B D Cow == B D Dolphin -- B D Hedgehog == B D Pika == B D Tarsier -- B D Rabbit == B D Bushbaby == B D Tenrec == B D Squirrel -- B D Tree shrew == B D Zebrafish == B D Malayan flying lemur == B D X. tropicalis == B D Chicken == B D Lamprey == Inserts between block 54 and 55 in window B D Elephant 240bp Alignment block 55 of 76 in window, 37103649 - 37103649, 1 bps B D Mouse -----------a GCF_003668045 ttggtcttgcca Beaver -----------a B D Dog ------------ B D Rhesus ============ B D Guinea pig ============ B D Sheep ------------ B D Horse ------------ B D Hawaiian monk seal ============ B D Gorilla ============ B D Bonobo ============ B D Chimp ============ B D Human ============ B D Marmoset ------------ B D Opossum ============ B D Pig ============ B D Chinese pangolin ------------ B D Rat ============ B D Shrew ============ B D Cow ============ B D Elephant ============ B D Dolphin ------------ B D Hedgehog ============ B D Pika ============ B D Tarsier ------------ B D Rabbit ============ B D Bushbaby ============ B D Tenrec ============ B D Squirrel ------------ B D Tree shrew ============ B D Zebrafish ============ B D Malayan flying lemur ============ B D X. tropicalis ============ B D Chicken ============ B D Lamprey ============ Inserts between block 55 and 56 in window Beaver 48bp Alignment block 56 of 76 in window, 37103650 - 37103664, 15 bps B D Mouse ggtgtggttggcata--- GCF_003668045 ggtggtggtggttca--- B D Squirrel --tgttgtt--------- B D Marmoset ---gttggt--------- B D Tarsier ---gttggt--------- B D Dolphin --tgttggc------ctg B D Sheep --tgtttgt------ctt B D Horse --tgttggt------ctt B D Chinese pangolin --tgttggt------ctt B D Dog --tgttggt------ctt B D Rhesus ================== B D Guinea pig ================== B D Hawaiian monk seal ================== B D Gorilla ================== B D Bonobo ================== B D Chimp ================== B D Human ================== B D Opossum ================== B D Pig ================== B D Rat ================== Beaver ================== B D Shrew ================== B D Cow ================== B D Elephant ================== B D Hedgehog ================== B D Pika ================== B D Rabbit ================== B D Bushbaby ================== B D Tenrec ================== B D Tree shrew ================== B D Zebrafish ================== B D Malayan flying lemur ================== B D X. tropicalis ================== B D Chicken ================== B D Lamprey ================== Inserts between block 56 and 57 in window B D Dolphin 86bp B D Sheep 5bp Alignment block 57 of 76 in window, 37103665 - 37103668, 4 bps B D Mouse agct GCF_003668045 cgcc B D Squirrel --ct B D Marmoset --ct B D Tarsier --ct B D Sheep aact B D Horse ggtc B D Chinese pangolin ggtt B D Dog gatc B D Rhesus ==== B D Guinea pig ==== B D Hawaiian monk seal ==== B D Gorilla ==== B D Bonobo ==== B D Chimp ==== B D Human ==== B D Opossum ==== B D Pig ==== B D Rat ==== Beaver ==== B D Shrew ==== B D Cow ==== B D Elephant ==== B D Dolphin ==== B D Hedgehog ==== B D Pika ==== B D Rabbit ==== B D Bushbaby ==== B D Tenrec ==== B D Tree shrew ==== B D Zebrafish ==== B D Malayan flying lemur ==== B D X. tropicalis ==== B D Chicken ==== B D Lamprey ==== Inserts between block 57 and 58 in window B D Sheep 25bp B D Dog 344bp Alignment block 58 of 76 in window, 37103669 - 37103717, 49 bps B D Mouse tataatct---------cagtgatt------------caagaggat---tgcaagttcaaggccaaccca GCF_003668045 tttaatcc---------cagcacttgggaggcagaagcaggcggatctctgtgagttcaagaccagtctg B D Squirrel tagactgc---------ca--------------------------------------------------- B D Marmoset tggtctgccacaagctaca------------------caagc---------------------------- B D Tarsier cagtctgc---------ca------------------tgagc---------------------------- B D Horse -----tgc-------------------------------------------------------------- B D Chinese pangolin -----tgc-------------------------------------------------------------- B D Dog ====================================================================== B D Rhesus ====================================================================== B D Guinea pig ====================================================================== B D Sheep ====================================================================== B D Hawaiian monk seal ====================================================================== B D Gorilla ====================================================================== B D Bonobo ====================================================================== B D Chimp ====================================================================== B D Human ====================================================================== B D Opossum ====================================================================== B D Pig ====================================================================== B D Rat ====================================================================== Beaver ====================================================================== B D Shrew ====================================================================== B D Cow ====================================================================== B D Elephant ====================================================================== B D Dolphin ====================================================================== B D Hedgehog ====================================================================== B D Pika ====================================================================== B D Rabbit ====================================================================== B D Bushbaby ====================================================================== B D Tenrec ====================================================================== B D Tree shrew ====================================================================== B D Zebrafish ====================================================================== B D Malayan flying lemur ====================================================================== B D X. tropicalis ====================================================================== B D Chicken ====================================================================== B D Lamprey ====================================================================== Mouse gcc GCF_003668045 gtc Squirrel --- Marmoset --- Tarsier --- Horse --- Chinese pangolin --- Dog === Rhesus === Guinea pig === Sheep === Hawaiian monk seal === Gorilla === Bonobo === Chimp === Human === Opossum === Pig === Rat === Beaver === Shrew === Cow === Elephant === Dolphin === Hedgehog === Pika === Rabbit === Bushbaby === Tenrec === Tree shrew === Zebrafish === Malayan flying lemur === X. tropicalis === Chicken === Lamprey === Inserts between block 58 and 59 in window GCF_003668045 79bp Alignment block 59 of 76 in window, 37103718 - 37103808, 91 bps B D Mouse aatttagtgaacttttttcttagggaa-----aaacttaaagagattagggttatatatcttagttagtg B D Squirrel -------tcaactatatttctaaaaca-----aaa------------------atctcttttaatt---- B D Marmoset --------tatgtgtatttctaaaaaaacaacaga----aaga------------ctgttttaaat---- B D Tarsier --------tatatgtatttcttaaaaa-----aaa----aag-----------------tttgaata--- B D Horse -catgaactgtgtatatttctaaaaaa-----aaa---aaagaaaccct----acctatttttat----- B D Chinese pangolin -cattagttgtatgtatttcttaaaaa-----aag---aaagaaagtct---------ctttaat----- B D Dog ====================================================================== B D Rhesus ====================================================================== B D Guinea pig ====================================================================== B D Sheep ====================================================================== B D Hawaiian monk seal ====================================================================== B D Gorilla ====================================================================== B D Bonobo ====================================================================== B D Chimp ====================================================================== B D Human ====================================================================== B D Opossum ====================================================================== B D Pig ====================================================================== B D Rat ====================================================================== Beaver ====================================================================== B D Shrew ====================================================================== B D Cow ====================================================================== B D Elephant ====================================================================== B D Dolphin ====================================================================== B D Hedgehog ====================================================================== B D Pika ====================================================================== GCF_003668045 ====================================================================== B D Rabbit ====================================================================== B D Bushbaby ====================================================================== B D Tenrec ====================================================================== B D Tree shrew ====================================================================== B D Zebrafish ====================================================================== B D Malayan flying lemur ====================================================================== B D X. tropicalis ====================================================================== B D Chicken ====================================================================== B D Lamprey ====================================================================== Mouse tacttgtgtagcatctggtaggccta Squirrel -------------------------- Marmoset -------------------------- Tarsier -------------------------- Horse -------------------------- Chinese pangolin -------------------------- Dog ========================== Rhesus ========================== Guinea pig ========================== Sheep ========================== Hawaiian monk seal ========================== Gorilla ========================== Bonobo ========================== Chimp ========================== Human ========================== Opossum ========================== Pig ========================== Rat ========================== Beaver ========================== Shrew ========================== Cow ========================== Elephant ========================== Dolphin ========================== Hedgehog ========================== Pika ========================== GCF_003668045 ========================== Rabbit ========================== Bushbaby ========================== Tenrec ========================== Tree shrew ========================== Zebrafish ========================== Malayan flying lemur ========================== X. tropicalis ========================== Chicken ========================== Lamprey ========================== Alignment block 60 of 76 in window, 37103809 - 37103825, 17 bps B D Mouse gactcaatccccaggaa B D Dolphin gacttgattatcagact B D Dog ================= B D Rhesus ================= B D Guinea pig ================= B D Sheep ================= B D Horse ----------------- B D Hawaiian monk seal ================= B D Gorilla ================= B D Bonobo ================= B D Chimp ================= B D Human ================= B D Marmoset ----------------- B D Opossum ================= B D Pig ================= B D Chinese pangolin ----------------- B D Rat ================= Beaver ================= B D Shrew ================= B D Cow ================= B D Elephant ================= B D Hedgehog ================= B D Pika ================= B D Tarsier ----------------- GCF_003668045 ================= B D Rabbit ================= B D Bushbaby ================= B D Tenrec ================= B D Squirrel ----------------- B D Tree shrew ================= B D Zebrafish ================= B D Malayan flying lemur ================= B D X. tropicalis ================= B D Chicken ================= B D Lamprey ================= Alignment block 61 of 76 in window, 37103826 - 37103826, 1 bps B D Mouse t B D Sheep t B D Dog = B D Rhesus = B D Guinea pig = B D Horse - B D Hawaiian monk seal = B D Gorilla = B D Bonobo = B D Chimp = B D Human = B D Marmoset - B D Opossum = B D Pig = B D Chinese pangolin - B D Rat = Beaver = B D Shrew = B D Cow = B D Elephant = B D Dolphin - B D Hedgehog = B D Pika = B D Tarsier - GCF_003668045 = B D Rabbit = B D Bushbaby = B D Tenrec = B D Squirrel - B D Tree shrew = B D Zebrafish = B D Malayan flying lemur = B D X. tropicalis = B D Chicken = B D Lamprey = Alignment block 62 of 76 in window, 37103827 - 37103828, 2 bps B D Mouse gc B D Sheep at B D Elephant at B D Dog == B D Rhesus == B D Guinea pig == B D Horse -- B D Hawaiian monk seal == B D Gorilla == B D Bonobo == B D Chimp == B D Human == B D Marmoset -- B D Opossum == B D Pig == B D Chinese pangolin -- B D Rat == Beaver == B D Shrew == B D Cow == B D Dolphin -- B D Hedgehog == B D Pika == B D Tarsier -- GCF_003668045 == B D Rabbit == B D Bushbaby == B D Tenrec == B D Squirrel -- B D Tree shrew == B D Zebrafish == B D Malayan flying lemur == B D X. tropicalis == B D Chicken == B D Lamprey == Alignment block 63 of 76 in window, 37103829 - 37103829, 1 bps B D Mouse a B D Human a B D Chimp a B D Bonobo a B D Gorilla a B D Rhesus a B D Marmoset a B D Sheep a B D Horse a B D Chinese pangolin g B D Elephant a B D Dog = B D Guinea pig = B D Hawaiian monk seal = B D Opossum = B D Pig = B D Rat = Beaver = B D Shrew = B D Cow = B D Dolphin - B D Hedgehog = B D Pika = B D Tarsier - GCF_003668045 = B D Rabbit = B D Bushbaby = B D Tenrec = B D Squirrel - B D Tree shrew = B D Zebrafish = B D Malayan flying lemur =