Multiz Alignments of 35 Vertebrates

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Capitalize exons based on show bases

Place cursor over species for alignment detail. Click on 'B' to link to browser for aligned species, click on 'D' to get DNA for aligned species.
Alignment block 1 of 438 in window, 37095881 - 37096029, 149 bps B D Mouse tgggatatttttcaagtaatgatatcaagatcaactacaccagacttgataaaaataggaatgaagctcc B D Rat tgggatatttttcaagtaatgatatcaagatcaactacaccagacttgataaagataggaatgaagctcc GCF_003668045 tgggatattttccaagtaatgatatcaagatcaaccacaccagacctgataaaaataggaatgaagctcc Beaver tgggatattttccaagtaatgatatcaagatcaactacaccagatctgattaaaataggaatgaagctcc B D Squirrel tgggatattttccaagtaatgatatcaagatcaacaacaccagacctgataaaaataggcatgaagctcc B D Guinea pig tgggatattttccaagtaatgatatcaagatcaactacaccagacctgataaaaataggaatgaagctcc B D Rabbit tgggatattttccaagtaatgatatcaagatcaaccacaccagatctgataaaaataggaatgaagctcc B D Pika tgggatattttccaagtaatgatatcaagatccaccacaccagatctgataaaaataggaatgaagctcc B D Human tgggatattttccaagtaatgatatcaaggtcaaccacaccagatctgataaaaataggaatgaagctcc B D Chimp tgggatattttccaagtaatgatatcaaggtcaaccacaccagatctgataaaaataggaatgaagctcc B D Bonobo tgggatattttccaagtaatgatatcaaggtcaaccacaccagatctgataaaaataggaatgaagctcc B D Gorilla tgggatattttccaagtaatgatatcaaggtcaaccacaccagatctgataaaaataggaatgaagctcc B D Rhesus tgggatattttccaagtaatgatatcaagatcaaccacaccagatctgataaaaataggaatgaaactcc B D Marmoset tgggatattttccaagtaatgatatcaagatcaaccacaccagatctgataaaaataggaatgaaactcc B D Tarsier tgggatattttccaagtaatgatatcaagatctaccacaccagacctgataaaaataggaatgaagctgc B D Bushbaby tgggatattttccaagtcatgatatcaagatcaaccacaccagacctgataaaaataggaatgaagctcc B D Tree shrew tgggatattttccaagtaatgatatcaagatcaaccacaccagacctgataaaaataggaatgaagctcc B D Malayan flying lemur tgggatattttccaagtaatgatatcaagatcaaccacaccagacctaataaaaataggaatgaagctcc B D Pig tgggatatttttcaagtaatgatatcaagatcaaccacgccagacctgataaaaataggaatgaagctgc B D Dolphin tgggatattttccaagtaatgatatcaagatcaactacaccagacctgataaaaataggaatgaagctgc B D Cow tgggatattttccaagtaatgatatcaagatcaactacaccagacctgataaaaataggaatgaagctcc B D Sheep tgggatattttccaagtaatgatatcaagatcaactacaccagacctgataaaaataggaatgaagctcc B D Horse tgggatattttccaagtaatgatatcaagatcaaccacaccagacctgataaaaataggaatgaagctcc B D Chinese pangolin tgggatattttccaagtaatgatatcaagatcaaccacaccagacctgataaaaataggaatgaaactcc B D Dog tgggatattttccaagtaatgatatcacgatcaactacaccagacctgataaaaataggaatgaagctcc B D Hawaiian monk seal tgggatattttccaagtaatgatatcaagatcaactacaccagacctgataaaaataggaatgaagctcc B D Hedgehog tgggatattttccaagtgatgatttcaagatcaaccacaccggacctgataaaaataggcatgaaactcc B D Shrew tgggatattttccaagtgatgatctcaagatcaaccacaccagatttgataaaaataggaatgaagctcc B D Elephant tgggatattttccaagttatgatatcaagatcaaccacaccagacctaataaaaataggaatgaagctcc B D Tenrec tgggatattttccaagtaatgatatcaagatcaaccacaccagacctgataaaaataggaatgaagctgc B D Opossum tgggatattttccaagtaatgatttccagatcaaccactccagacttgataaaaataggaatgaaactcc B D Chicken tgggatatcttccaagtgatgatttcaagatcgactacaccagatctaataaaaataggaatgaagctcc B D X. tropicalis tgggatattttccaggttatgatctcccgctcaactacacctgatctcataaaaatagggatgaaactac B D Zebrafish tgggacattttccaggtgatcatctctcgctccaccactcctgacctgataaagatcggcatgaagctgc B D Lamprey tggagcgtcttccaggtgatgatttcacgctccactacgccggacctcgttcgcatcggcgtgaagctgc Mouse aagagtttttcacacaacagtttgatactagtaagcgagctctgtcaacctggggacctgttccttatct Rat aggagtttttcacgcagcagtttgacactagtaaacgagctctgtcgacctggggacctgttccttacct GCF_003668045 aggaatttttcacacaacagtttgataccagcaaacgagctctatcaacctggggacctgttccttatct Beaver aggaatttttcacacaacagttcgacaccagcaaacgagctctgtctacctggggaccagttccttatct Squirrel aggaatttttcacacaacagtttgacaccagcaaacgagctctgtctacttggggaccagttccttatct Guinea pig aggaatttttcactcagcagtttgacaccagcaaacgagctctgtctacctggggaccagttccttatct Rabbit aggaatttttcacccaacagtttgataccagcaaacgagctctgtctacctggggaccagttccttatct Pika aggaatttttcacccaacagtttgataccagcaaacgagctctgtctacgtggggaccagttccctatct Human aggaatttttcacacaacaatttgataccagcaaacgagctctgtctacctggggaccagttccttacct Chimp aggaatttttcacacaacaatttgataccagcaaacgagctctgtctacctggggaccagttccttacct Bonobo aggaatttttcacacaacaatttgataccagcaaacgagctctgtctacctggggaccagttccttacct Gorilla aggaatttttcacacaacaatttgataccagcaaacgagctctgtctacctggggaccagttccttacct Rhesus aggaatttttcacacaacaatttgataccagcaaacgagctctgtctacctggggaccagttccttatct Marmoset aggaatttttcacacaacaatttgataccagcaaacgagctctgtctacttggggaccagttccttatct Tarsier aagaatttttcacacaacagtttgacaccagtaaacgggctctgtctacctggggaccagttccttatct Bushbaby aggaatttttcacacaacagtttgataccagcaaacgagctctgtctacctggggaccagttccttatct Tree shrew aggaatttttcactcaacagtttgacaccagcaaacgagctctctctacctggggaccagttccttatct Malayan flying lemur aggaatttttcacacagcagtttgacaccagtaaacgagctttgtctacctggggaccagttccttatct Pig aggaatttttcactcaacagtttgacaccagcaaacgagctctgtctacctggggaccagttccttatct Dolphin aggaatttttcactcaacagtttgacaccagcaaacgagctctgtctacctggggaccagttccttatct Cow aggaatttttcactcagcagtttgacaccagcaaacgagctctgtctacctggggaccagttccttatct Sheep aggaatttttcactcagcagtttgacaccagcaaacgagctctgtctacctggggaccagttccttatct Horse aggaatttttcacacaacagtttgacaccagcaaacgagctctgtctacctggggaccagttccttatct Chinese pangolin aggaatttttcacacaacagtttgataccagcaaacgagctctgtctacctggggaccagttccttatct Dog aggaattttttacacaacagtttgacaccagcaaacgagctttgtctacctggggacccgttccatatct Hawaiian monk seal aggaatttttcacacaacagtttgacaccagcaaacgagctctgtctacctggggacccgttccatatct Hedgehog aggaattcttcacacagcagtttgataccagtaaacgagctctgtctacctggggaccagttccttacct Shrew aggagtttttcacacagcagtttgataccagcaaacgagctttgtctacttggggaccagttccttacct Elephant aggagtttttcacacagcagtttgacaccagcaaacgagccctgtctacctggggaccagttccttatct Tenrec aggaatttttcacacagcaatttgacaccagcaaacgagccttgtctacttgggggccagttccttatct Opossum aggaattcttcacccaacagtttgacacaagcaagcgggctctgtctacttggggaccagttccttacct Chicken aggagttctttactcaacagtttgacacaagcaaacgagctttgtctacttggggacccgttccttatct X. tropicalis aagagtttttcacccagcagtttgatacaagcaaacgcgcattgtctacttgggggccagtcccatacct Zebrafish aggagttcttcacacagcagtttgacaccagcaagcgagccctgtccacctggggcccggtgccctacat Lamprey aggagttcttcacgcagcagttcgacaccagcaagcgcgccctctccacgtggggtcccgtactctacgg Mouse gccgcccaa Rat gccacccaa GCF_003668045 tccacccaa Beaver tccaccaaa Squirrel tccaccgaa Guinea pig tccaccaaa Rabbit tccaccaaa Pika gccaccaaa Human tccgccaaa Chimp tccgccaaa Bonobo tccgccaaa Gorilla tccaccaaa Rhesus tccgccaaa Marmoset tccaccaaa Tarsier tccaccaaa Bushbaby tccaccaaa Tree shrew tccaccaaa Malayan flying lemur tccaccaaa Pig tccacctaa Dolphin tccacctaa Cow tccacctaa Sheep tccacctaa Horse tccacctaa Chinese pangolin tccacctaa Dog tccacctaa Hawaiian monk seal tccacctaa Hedgehog gccgcccaa Shrew tccacctaa Elephant tccacctaa Tenrec tccacctaa Opossum tcccccaaa Chicken gcctcccaa X. tropicalis gccaccaaa Zebrafish gcctcccaa Lamprey cccgcacaa Inserts between block 1 and 2 in window B D Lamprey 711bp Alignment block 2 of 438 in window, 37096030 - 37096075, 46 bps B D Mouse gacaatgaccaacaacctggaaaagaattcacaagaacaatgtaag B D Rat gacagtgactaacaacctggagaagaattcgcaggaacaatgtaag GCF_003668045 gacaatgactaacaacctagagaaaaattcacaagaacaatgtaag Beaver gacaattactaacaacctagaaaaaagttcacaagaacaatgtaag B D Squirrel gacagtgactaacaacctagagaaaagttcacaagaacaatgtaag B D Guinea pig gacgatgactaacaacctagagaaaagttcacaggaacagtgtaag B D Rabbit aacaatgactaacaacctagagaagagttcacaagaacaatgtaag B D Pika gacaatgacgaacaacctggagagaaattcacaagaacaatgtaag B D Human gacaatgactagcaacctagaaaaaagttcacaagaacaatgtaag B D Chimp gacaatgactagcaacctagaaaaaagttcacaagaacaatgtaag B D Bonobo gacaatgactagcaacctagaaaaaagttcacaagaacaatgtaag B D Gorilla gacaatgactagcaacctagaaaaaagttcacaagaacaatgtaag B D Rhesus gacaatgactagcaacctagaaaagagttcacaagaacaatgtaag B D Marmoset gacaatgactagcaacctagaaaaaagttcacaagaacaatgtaag B D Tarsier gacgatgactaacaacctagagaaaagttcacaagaacaatgtaag B D Bushbaby gacagtgactaacaacctagagaaaagttcacaagaacaatgtaag B D Tree shrew gacaattactaacaacctagagaaaagttcacaagaacaatgtaag B D Malayan flying lemur gacaacaactaacaacctagagaaaagttcacaagaacaatgtaag B D Pig gacagtgactaataacctagagaaaagttcacaagaacaatgtaag B D Dolphin gacaatgactaataacctagagaaaagttcacaagaacaatgtaag B D Cow gacaatgactaataacctagagaaaagttcacaagaacaatgtaag B D Sheep gacaatgactaataacctagagaaaagttcacaagaacaatgtaag B D Horse gacaatgactaataacctagagaaaagttcacaagaacaatgtaag B D Chinese pangolin gacaatgactaataacctagagagaagttcacaagaacaatgtaag B D Dog gacaatgacaaataacttagagaaaagttcacaggaacaatgtaag B D Hawaiian monk seal gacaatgactaataacctagagagaagttcacaagaacaatgtaag B D Hedgehog gacagtggccagcaacctggagagaagctcacaggaacagtgtaag B D Shrew gacagtgaccaacaacctagagagaagttcacaggaacaatgtaag B D Elephant aacaatgactaacaacctagagaaaagttcacaagaacaatgtaag B D Tenrec agcagtgacaaacaacctagagagaagttcacaagaacaatgtaag B D Opossum ggcaaccgccactcacctagagaagaattcacaagaactatgtaag B D Chicken gacaatggccaacaacttggagagaagctcacatgaacaacgtaag B D X. tropicalis gtcagctgccccaaatgtggagaaaaacacaagtgaacaatgtaag B D Zebrafish aacaccagtcatcaacacagacaaggcatctgctgaactctgtaag B D Lamprey ============================================== Inserts between block 2 and 3 in window B D Zebrafish 2789bp Alignment block 3 of 438 in window, 37096076 - 37096079, 4 bps B D Mouse attt B D Rat aacg GCF_003668045 aatt Beaver aatt B D Squirrel aatt B D Guinea pig aatt B D Rabbit aaat B D Pika aaaa B D Human aatt B D Chimp aatt B D Bonobo aatt B D Gorilla aatt B D Rhesus aatt B D Marmoset aatt B D Tarsier aatt B D Bushbaby aatt B D Tree shrew aatg B D Malayan flying lemur aatt B D Pig agtt B D Dolphin agtt B D Cow agtt B D Sheep agtt B D Horse aatt B D Chinese pangolin aatt B D Dog aatt B D Hawaiian monk seal aatc B D Hedgehog agtc B D Shrew aatc B D Elephant aatt B D Tenrec actt B D Opossum aatc B D Chicken tagt B D X. tropicalis agtt B D Zebrafish ==== B D Lamprey ==== Inserts between block 3 and 4 in window B D X. tropicalis 302bp Alignment block 4 of 438 in window, 37096080 - 37096080, 1 bps B D Mouse a-- B D Rat g-- GCF_003668045 g-- Beaver a-- B D Squirrel a-- B D Guinea pig a-- B D Rabbit a-- B D Pika a-- B D Human a-- B D Chimp a-- B D Bonobo a-- B D Gorilla a-- B D Rhesus a-- B D Marmoset a-- B D Tarsier a-- B D Bushbaby a-- B D Tree shrew a-- B D Malayan flying lemur a-- B D Pig a-- B D Dolphin a-- B D Cow a-- B D Sheep a-- B D Horse a-- B D Chinese pangolin a-- B D Dog a-- B D Hawaiian monk seal a-- B D Hedgehog a-- B D Shrew a-- B D Elephant a-- B D Tenrec a-- B D Opossum a-- B D Chicken acg B D Zebrafish === B D X. tropicalis === B D Lamprey === Inserts between block 4 and 5 in window B D Pig 7bp B D Dolphin 7bp B D Cow 7bp B D Sheep 8bp B D Horse 5bp B D Chinese pangolin 5bp B D Dog 5bp B D Hawaiian monk seal 5bp B D Hedgehog 5bp B D Shrew 2476bp B D Opossum 1411bp Alignment block 5 of 438 in window, 37096081 - 37096104, 24 bps B D Mouse gag-------cg--ttggtatattt-tttgtctt B D Rat gagtccca--ca--ctgatgga--g-tttatctt GCF_003668045 caattcaa--ca--ttgatctattc-ctcatctt Beaver gacttaaa--ta--tttacatatgt-tatatctt B D Squirrel gaattaat--tt--tttgtatatgc-tttatctt B D Guinea pig gaattaag--tt--tt---ata------------ B D Rabbit gaatttag--cc--tttatatttgc-cttttctt B D Pika gaattgag--cc--tttatatgtgc-cttatatt B D Human gaagtaag--ct--tttatatatgc-tttatctt B D Chimp gaagtaag--ct--tttatatatgc-tttatctt B D Bonobo gaagtaag--ct--tttatatatgc-tttatctt B D Gorilla gaagtaag--ct--tttatatatgc-tttatctt B D Rhesus gaattaag--ct--tttatatatgc-tttatctt B D Marmoset gaattaag--ct--tttctatatgc-tgtatctt B D Tarsier gaattaag--cc--tttgtatatgc-tttatctt B D Bushbaby taattaaa--tc--tttatatatac-tttatctc B D Tree shrew gaattaag--tc--tttatgtatgc-tataac-- B D Malayan flying lemur gaattaaacctc--tctatatatgc-ttttatct B D Pig -----aag--ac--tttagatatgcttttatctt B D Dolphin -----aag--gc--tttatatatgc-tttatctt B D Cow -----aag--ac--tttatatatac-tttatctt B D Sheep -----aag--ac--tt----tatac-tttatctt B D Horse -----aag--cc--tttatatatgc-tttatctt B D Chinese pangolin -----aag--tc--tttatatatgc-tttatctt B D Dog -----aag--cc--tttatatatgc-tttatctt B D Hawaiian monk seal -----aag--cc--tttatgtatgc-tttatctt B D Hedgehog -----aa---cc--ctcagatagag-cttatctc B D Elephant gaactaag--tc--tttatatatgc-tttatctt B D Tenrec gaactatt--tttatatatatatgc-ttcat-tt B D Chicken -----aaa--aa--gtagtatactt-tctgattt B D Opossum ================================== B D Shrew ================================== B D Zebrafish ================================== B D X. tropicalis ================================== B D Lamprey ================================== Inserts between block 5 and 6 in window Beaver 3bp B D Squirrel 1bp B D Rabbit 1bp B D Pika 1bp B D Human 3bp B D Chimp 3bp B D Bonobo 3bp B D Gorilla 3bp B D Rhesus 3bp B D Marmoset 367bp B D Tarsier 3bp B D Bushbaby 3bp B D Elephant 1bp B D Tenrec 1bp B D Chicken 488bp Alignment block 6 of 438 in window, 37096105 - 37096105, 1 bps B D Mouse c B D Rat c GCF_003668045 c Beaver c B D Squirrel c B D Guinea pig c B D Rabbit c B D Pika c B D Pig t B D Dolphin t B D Cow t B D Sheep t B D Horse t B D Chinese pangolin t B D Dog t B D Hawaiian monk seal t B D Hedgehog a B D Elephant c B D Tenrec c B D Rhesus = B D Gorilla = B D Bonobo = B D Chimp = B D Human = B D Marmoset = B D Opossum = B D Shrew = B D Tarsier = B D Bushbaby = B D Tree shrew - B D Zebrafish = B D Malayan flying lemur - B D X. tropicalis = B D Chicken = B D Lamprey = Inserts between block 6 and 7 in window B D Pig 213bp B D Dolphin 5bp B D Cow 5bp B D Sheep 5bp B D Horse 9bp B D Chinese pangolin 12bp B D Dog 10bp B D Hawaiian monk seal 10bp B D Hedgehog 6bp Alignment block 7 of 438 in window, 37096106 - 37096113, 8 bps B D Mouse cc----tatatg---- B D Rat cc----tgcacg---- GCF_003668045 ct----catatg---- Beaver ta----tatgtg---- B D Squirrel ac----taaatg---- B D Guinea pig ac----taaacg---- B D Rabbit aa----taagtc---- B D Pika aa----taagct---- B D Human -c----taaata---- B D Chimp -c----taaata---- B D Bonobo -c----taaata---- B D Gorilla -c----taaata---- B D Rhesus -c----taacta---- B D Tarsier -c----taa--a---- B D Bushbaby -c----taaata---- B D Tree shrew ------taagta---- B D Malayan flying lemur -ttcaataaata---- B D Pig ta----tg-------- B D Dolphin aa----ta-------- B D Cow tg----tg-------- B D Sheep tg----tg-------- B D Horse tg----tg-------- B D Chinese pangolin tc----tg-------- B D Dog tg----ta-------- B D Hawaiian monk seal tg----tg-------- B D Hedgehog cg----tg-------- B D Elephant ----ggtaaata--tg B D Tenrec ----agtaaataagta B D Marmoset ================ B D Opossum ================ B D Shrew ================ B D Zebrafish ================ B D X. tropicalis ================ B D Chicken ================ B D Lamprey ================ Inserts between block 7 and 8 in window B D Squirrel 1218bp B D Guinea pig 2bp B D Rabbit 2bp B D Pika 2bp B D Human 2bp B D Chimp 2bp B D Bonobo 2bp B D Gorilla 2bp B D Rhesus 2bp B D Tarsier 2bp B D Bushbaby 2bp B D Tree shrew 4bp B D Malayan flying lemur 4bp Alignment block 8 of 438 in window, 37096114 - 37096135, 22 bps B D Mouse ttatattct-----------------taagt---------aaca-------------------------- B D Rat ttatattct-----------------caagt---------aaca-------------------------- GCF_003668045 -tatattct-----------------taagt---------aaca-------------------------- Beaver ttgtattcc-----------------taattta-------aaat-------------------------- B D Squirrel ttgtattct-----------------taatt---------aaaaataat--------------------- B D Guinea pig ttttgttct-----------------ttatttt-------aaaa--aat--------------------- B D Rabbit ttaca-ttt-----------------taatttagaacatttaaa---at--------------------- B D Pika ttgtatttt-----------------taattta-------caga---tt--------------------- B D Human ttacatttt-----------------taatt---------taaaataat--------------------- B D Chimp ttacattct-----------------taatt---------taaaatcat--------------------- B D Bonobo ttacattct-----------------taatt---------taaaatcat--------------------- B D Gorilla ttacattct-----------------taatt---------taaaataat--------------------- B D Rhesus gtacattct-----------------taatt---------taaa---at--------------------- B D Tarsier ttccattct-----------------taatt---------taaaagaataataaca-------------- B D Bushbaby ttgtgttct-----------------taatt---------aaaaataacagtaaca-------------- B D Tree shrew ttacattct-----------------taatt---------gaaaaggatagtaacatgggaccagcagat B D Malayan flying lemur ttaaattct-----------------taatt----------aaaataatagtaaca-------------- B D Pig ttacactct-----------------taatt---------taaaataat--------------------- B D Dolphin t----gtgt-----------------taatt---------taaaataat--------------------- B D Cow ttacaattt-----------------taatt---------t-a---aac--------------------- B D Sheep ttacaattt-----------------taatt---------taa---aac--------------------- B D Horse tcactatct-----------------taatt---------taaaataat--------------------- B D Chinese pangolin ttacagtct-----------------taatt---------caaaataat--------------------- B D Dog tt-caatct-----------------taatt---------taaaataat--------------------- B D Hawaiian monk seal ttacaatct-----------------taatt---------t-aaataat--------------------- B D Hedgehog tcctgatct-----------------taatt-----------aaaaaat--------------------- B D Elephant ttataatttttttaaaaaagtaatagtaat----------aataataat--------------------- B D Tenrec ttctaattt-----------------taat----------aaaaataat--------------------- B D Marmoset ====================================================================== B D Opossum ====================================================================== B D Shrew ====================================================================== B D Zebrafish ====================================================================== B D X. tropicalis ====================================================================== B D Chicken ====================================================================== B D Lamprey ====================================================================== Mouse --------catt Rat --------ctt- GCF_003668045 --------catt Beaver --------aatt Squirrel -----aataatg Guinea pig -----aataatt Rabbit -----aataatt Pika -----agta--t Human -----aataatc Chimp -----aataatc Bonobo -----aataatc Gorilla -----aataatc Rhesus -----aataatc Tarsier ---agaataatc Bushbaby ---ataataatc Tree shrew ggcataatggtt Malayan flying lemur ---acaataatc Pig ------------ Dolphin ------------ Cow ------------ Sheep ------------ Horse ------------ Chinese pangolin ------------ Dog ------------ Hawaiian monk seal ------------ Hedgehog ------------ Elephant ------------ Tenrec ------------ Marmoset ============ Opossum ============ Shrew ============ Zebrafish ============ X. tropicalis ============ Chicken ============ Lamprey ============ Inserts between block 8 and 9 in window B D Tree shrew 70bp B D Pig 3bp B D Dolphin 3bp B D Cow 3bp B D Sheep 3bp B D Horse 3bp B D Chinese pangolin 3bp B D Dog 3bp B D Hawaiian monk seal 3bp B D Hedgehog 2321bp B D Elephant 35bp Alignment block 9 of 438 in window, 37096136 - 37096153, 18 bps B D Mouse tgtat----gc-----tgtacttagaa GCF_003668045 catat----gc-----catacttagaa Beaver tatgt----gc-----catacttacaa B D Squirrel tataa----gc-----catatttagga B D Guinea pig tatat----ac-----catacttacaa B D Rabbit ggtat----gt-----cat----acaa B D Pika agtat----gt-----catactcacag B D Human tgtat----gc-----cccacttagaa B D Chimp tgtat----gc-----cccacttagaa B D Bonobo tgtat----gc-----cccacttagaa B D Gorilla tgtat----gc-----cccacttagaa B D Rhesus tatat----gc-----cctacttagaa B D Tarsier tatat-----c-----catacttacaa B D Bushbaby tatat----gc-----tgtacttcccc B D Tree shrew tacat----gtgcatgtgtgctcagaa B D Malayan flying lemur tatat----gt-catacttacttacaa B D Pig tatat----ac-----catacttagaa B D Dolphin gatgt----ac-----catacttaaaa B D Cow taaat----ac-----catactcacaa B D Sheep taaat----ac-----catacttacaa B D Horse aatatctagac-----catacatagaa B D Chinese pangolin tgtgt----gc-----catatttacaa B D Dog tatgt----ac-----catatttacaa B D Hawaiian monk seal tatgt----at-----catacttacaa B D Elephant tatat----ac-----catattcacaa B D Tenrec ------------------------cat B D Marmoset =========================== B D Opossum =========================== B D Rat --------------------------- B D Shrew =========================== B D Hedgehog =========================== B D Zebrafish =========================== B D X. tropicalis =========================== B D Chicken =========================== B D Lamprey =========================== Inserts between block 9 and 10 in window B D Tree shrew 153bp Alignment block 10 of 438 in window, 37096154 - 37096158, 5 bps B D Mouse agt--at- B D Rat -at--at- GCF_003668045 agt--at- Beaver agt--at- B D Squirrel agt--aa- B D Guinea pig agt--at- B D Rabbit gat--ag- B D Pika gcttagg- B D Human aat--ag- B D Chimp aat--ag- B D Bonobo aat--ag- B D Gorilla aat--ag- B D Rhesus aat--ag- B D Tarsier aac--ag- B D Bushbaby aat--ag- B D Malayan flying lemur tgt--ag- B D Pig agt--gg- B D Dolphin agt--gg- B D Cow agg--gg- B D Sheep agg--gg- B D Horse agt--gg- B D Chinese pangolin agt--gg- B D Dog agt--gg- B D Hawaiian monk seal agt--ga- B D Elephant agt--agt B D Tenrec agt--agt B D Marmoset ======== B D Opossum ======== B D Shrew ======== B D Hedgehog ======== B D Tree shrew ======== B D Zebrafish ======== B D X. tropicalis ======== B D Chicken ======== B D Lamprey ======== Inserts between block 10 and 11 in window Beaver 1bp Alignment block 11 of 438 in window, 37096159 - 37096193, 35 bps B D Mouse cctgtggg----------------ctctccatcccgtccactcagcagaaa B D Rat cctgtgtg------------------------------------------- GCF_003668045 -ctgtgga----------------ttctccatcacatcccctcagcac--- Beaver cctgaata----------------ctctttgtcccatttattcagcaaagg B D Squirrel cctgta-g----------------ctctttatcccgtttactcagaaagag B D Guinea pig cgaatggg----------------ctctttgtcccattcatttggcaaaga B D Rabbit cctataga----------------ttccatgtcccagttactcagcaaagg B D Pika tctgtagg----------------ctgcatgtctgattcactcaccaaagg B D Human cccacagg----------------ctctttatctcactcagttagcaaagg B D Chimp cccacagg----------------ctctttatctcactcagttagcaaagg B D Bonobo cccacagg----------------ctctttatctcactcagttagcaaagg B D Gorilla cccacagg----------------ctctttatctcactcagttagcaaagg B D Rhesus cccacagg----------------ctctttatcccactcagttagcaaagg B D Marmoset cccacagg----------------ctctttatcccactcaattagcaaagg B D Tarsier cctgcaga----------------ctctttatcccattcactcagcaaagg B D Bushbaby gccatagg----------------ctctttatcccattcactcaacaaagg B D Malayan flying lemur cccataga----------------ctcttcaccccactcactcagcaaagg B D Pig tccatgtg----------------cttgtta----acttactcagcagagt B D Dolphin tccatatg----------------ctttttatcctgctcactcagcaaagt B D Cow tccatatg----------------ctctttatcctactcactcagcaaagt B D Sheep tccatatg----------------ctctttatgctactcactcagcaaagt B D Horse tccatatg----------------ctctttatcctcttcactcatcaaagt B D Chinese pangolin tccatatg----------------ctctt---------------------- B D Dog tccatgtaaatattattattatttattattattctattcactcggcaaagt B D Hawaiian monk seal tccatatg----------------ctctttattctattcactcagcaaagt B D Elephant -------------------cctgtttccctcctccctttacacagcaaaca B D Tenrec -------------------aat-------------ctatataccgtac--- B D Opossum =================================================== B D Shrew =================================================== B D Hedgehog =================================================== B D Tree shrew =================================================== B D Zebrafish =================================================== B D X. tropicalis =================================================== B D Chicken =================================================== B D Lamprey =================================================== Inserts between block 11 and 12 in window B D Human 1bp B D Chimp 1bp B D Bonobo 1bp B D Gorilla 1bp B D Rhesus 1bp B D Marmoset 1bp B D Tarsier 1bp B D Bushbaby 1bp B D Malayan flying lemur 1bp B D Pig 1bp B D Dolphin 1bp B D Cow 1bp B D Sheep 1bp B D Horse 1bp B D Dog 1bp B D Hawaiian monk seal 1bp Alignment block 12 of 438 in window, 37096194 - 37096274, 81 bps B D Mouse actgact----------gtgt----------------tccta----gtaatggtgtcagct---gctctt B D Rat --tgact----------gggc----------------tccga----ggaatggtgccagct---gc-ctt GCF_003668045 --tgact----------atgc----------------tcctg----ataatcacatcagct---gccctt Beaver actgatt----------cc-t----------------acctg----ccaacgttactagag---gccatt B D Squirrel actgact----------tgct----------------acctg----ccagtga-gtgaaag---gccact B D Guinea pig actgatt----------tctt----------------atctg----ccagtggaattagtg---ttcatt B D Rabbit acctaaa----------atac----------------tactg----ctatgagaattagaggttatcact B D Pika cc--------------------------------------------------------------atcact B D Human ccagaat----------ttct----------------acctg----ccaatggaattagaggccatcatt B D Chimp ccagaat----------ttct----------------acctg----ccaatggaattagaggccatcatt B D Bonobo ccagaat----------ttct----------------acctg----ccaatggaattagaggccatcatt B D Gorilla ccagaat----------ttct----------------acctg----ccaatggaattagaggccatcatt B D Rhesus ccagatt----------ttct----------------acctg----ccaatggaattagaggccattatt B D Marmoset tcagatt----------ttct----------------acctg----ccagtggaattagaggtcatcatt B D Tarsier ccagatt----------ttct----------------acctg----ct--tggaattagaggccatcatt B D Bushbaby ccttatt----------t----------------------------ccagtagaattagaggccatcatt B D Tree shrew acagagtagccagtaggttctagtcactcaacgaaagaccta----ccagtggaataagaggccatcttt B D Malayan flying lemur cctgatt----------ttct----------------acatg----ccagtggacttagagaccatcatt B D Pig cccaatt----------tcct----------------ac-----------tggaattagaggccatcatt B D Dolphin cccaatt----------tcct----------------acccg----ccagtggaattagaggccatcatt B D Cow ctc-atg----------tcct----------------accca----ccaatggaattagaagccatcatt B D Sheep ctc-atg----------tcct----------------accca----ccaatggaattagaagccatcatt B D Horse tctaatt----------tcca----------------accca----acaagggaattaaaggccatcatt B D Chinese pangolin cctgatt----------tcct----------------tctct----ctggtggaataagaagccatcatt B D Dog cctgatt----------tcct----------------accca----ccaatggaattaaaggccatcatt B D Hawaiian monk seal cctgatt----------tcct----------------accca----ccaatagaattaaaggccatcatt B D Elephant -------------------------------------acctgtccgctagtggaaatagaggccgtcact B D Tenrec ----------------------------------------------caagtggtcctgtttcccgcctc- B D Opossum ====================================================================== B D Shrew ====================================================================== B D Hedgehog ====================================================================== B D Zebrafish ====================================================================== B D X. tropicalis ====================================================================== B D Chicken ====================================================================== B D Lamprey ====================================================================== Mouse tgggaaggtat---tactttttat-----c---------ctccacca-cagcttagctgcag Rat tgggaaggaat---tgctttt--c-----c---------cttcacca-cagctaag-ggcag GCF_003668045 taggaaggtat---ttctgtttct-----c---------ctccacca-cagctcacctgtag Beaver tgggaagttat---catttattat-----c--tccgtctccctttct-ccattcaactgcag Squirrel caggaagtcat---ttgtccttat-----tgtctccttttcctgcca-cagctcatctgtag Guinea pig gcaaaagtcgt---ttgttaattt-----c-----ctcctcctgtca-cacatcatctgcag Rabbit ggagaagtcat---catttatcac-----c----ccactccttgcca-caactcatctgccc Pika ggggaagctgt---cgtttattgc-----c---tccactctgtgcca-cagctcctctgcag Human taggaagacat---catttgttat-----c---tcttccccctgctg-cagtgcatctgcat Chimp taggaagacat---catttgttat-----c---tcttccccctgctg-cagtgcatctgcat Bonobo taggaagacat---catttgttat-----c---tcttccccctgctg-cagtgcatctgcat Gorilla taggaagacat---catttgttat-----c---tcttccccctgctg-cagtgcatctgcat Rhesus taggaagacat---catttgttat-----c---tcttccctttgctg-cagtgcatctgcat Marmoset taggaagttat---catttattat-----c---ccttccccctgctg-cagtgcatctgcat Tarsier tgggaagtcat---cacttattat-----c---tcttccc-ctgcca-tgatgcatctgcca Bushbaby tgggaagttat---tacttattat-----c---tattccccctacta-taatgcatctacaa Tree shrew tgggaagtcat---catttattat-----c---tcttcctcctccca-ctgttcatccatag Malayan flying lemur tgggaagtcac---catttattat-----c---tcctccccctacca-cagctcatctgcaa Pig tgggaag-tatt--catttactat-----c---t-ctacccctgcca-caactcatctacaa Dolphin tgggaagtcattcacattcattat-----c---tcctccccctgcca-cagctcatctacaa Cow tggaaagacatt--cattcattat-----c---t----cccctgcca-caaaccatctataa Sheep tggaaagacagt--cattcattat-----c---t----cccctgcca-caaaccatctataa Horse tggaaagtcat---catttatttt-----------ctctctctgcta-caactcatctgcaa Chinese pangolin tggaaagttat---catctattttattttc---tcctccccctgcca-caactgatctataa Dog tgggaagtcat---tatttattac-----c---tcctccccctgcca-caactcacctataa Hawaiian monk seal tgggaagtcat---cacatattac-----c---tccttctcctgcca-caactcacctataa Elephant -gggaagtcat---catttattgt-----c---ttctctccctgctgtcaacttatctgtaa Tenrec ----------t---catttattgc-----a---ctctgtccctgtcactaactcatctgcaa Opossum ============================================================== Shrew ============================================================== Hedgehog ============================================================== Zebrafish ============================================================== X. tropicalis ============================================================== Chicken ============================================================== Lamprey ============================================================== Inserts between block 12 and 13 in window Beaver 12bp B D Squirrel 12bp B D Guinea pig 12bp B D Rabbit 12bp B D Pika 12bp B D Human 12bp B D Chimp 12bp B D Bonobo 12bp B D Gorilla 12bp B D Rhesus 12bp B D Marmoset 12bp B D Tarsier 12bp B D Bushbaby 12bp B D Tree shrew 12bp B D Malayan flying lemur 12bp B D Pig 127bp Alignment block 13 of 438 in window, 37096275 - 37096275, 1 bps B D Mouse c B D Rat c GCF_003668045 c Beaver c B D Squirrel c B D Guinea pig c B D Rabbit c B D Pika c B D Human c B D Chimp c B D Bonobo c B D Gorilla c B D Rhesus c B D Marmoset c B D Tarsier t B D Bushbaby c B D Tree shrew c B D Malayan flying lemur c B D Pig c B D Dolphin t B D Cow t B D Sheep t B D Horse g B D Chinese pangolin c B D Dog c B D Hawaiian monk seal c B D Elephant c B D Tenrec c B D Opossum = B D Shrew = B D Hedgehog = B D Zebrafish = B D X. tropicalis = B D Chicken = B D Lamprey = Inserts between block 13 and 14 in window B D Dolphin 169bp B D Cow 27bp B D Sheep 27bp B D Horse 1bp B D Chinese pangolin 1bp B D Dog 1bp B D Hawaiian monk seal 2bp B D Elephant 1bp B D Tenrec 1bp Alignment block 14 of 438 in window, 37096276 - 37096280, 5 bps B D Mouse atatc B D Rat atgcc GCF_003668045 atacc Beaver atgct B D Squirrel atgcc B D Guinea pig atgct B D Rabbit atggc B D Pika atggc B D Human acgct B D Chimp acgct B D Bonobo acgct B D Gorilla acgct B D Rhesus acact B D Marmoset atgct B D Tarsier gtgct B D Bushbaby atgct B D Tree shrew atgct B D Malayan flying lemur atact B D Pig atatt B D Dolphin atatg B D Cow atatt B D Sheep atatt B D Horse atgtt B D Chinese pangolin atacc B D Dog atacc B D Hawaiian monk seal atacc B D Elephant atacc B D Tenrec atact B D Opossum ===== B D Shrew ===== B D Hedgehog ===== B D Zebrafish ===== B D X. tropicalis ===== B D Chicken ===== B D Lamprey ===== Inserts between block 14 and 15 in window B D Pig 34bp B D Dolphin 21bp B D Cow 19bp B D Sheep 131bp B D Horse 11bp B D Chinese pangolin 11bp B D Dog 11bp B D Hawaiian monk seal 11bp Alignment block 15 of 438 in window, 37096281 - 37096301, 21 bps B D Mouse -----------tac--------------tccgtgacaaagttaaaa B D Rat -----------tac--------------tctgtggcgatgttagat GCF_003668045 -----------tgc--------------tatgtgacagtattatat Beaver -----------ttcgtttgc------tgtttatgacagtaccataa B D Squirrel -----------cctaagtat------tgtttatgacaatgtcatgc B D Guinea pig -----------tttaaatat------gatttatgataatatcatat B D Rabbit -----------cttgaacac------tgtgtatgacagtaacatgt B D Pika -----------catgacagc------tgttcacaacagtattgtgt B D Human -----------cttgaatag------tgtttatgagaatatcatgt B D Chimp -----------cttgaatag------tgtttatgagaatatcatgt B D Bonobo -----------cttgaatag------tgtttatgagaatatcatgt B D Gorilla -----------cttgaatag------tgtttatgagaatatcatgt B D Rhesus -----------cttgaatac------tgtttatgacaatatcatgt B D Marmoset -----------cttgaatac------tgtttatgataatatcatgt B D Tarsier -----------cttgaatac------tgtttatggcaatatcatgg B D Bushbaby -----------cttaaatac------tgtttataacagtatcatgt B D Tree shrew -----------cttgagtac------tgcttataacaatgtcatgt B D Malayan flying lemur -----------ctcaaatactatgagtatttatgacaatatcatgt B D Pig -----------cttgaagac------taat---------------- B D Dolphin -----------ctttaatac------taaat--------------- B D Cow -------------------a------taatt--------------- B D Sheep -----------cttgaatac------taatt--------------- B D Horse -----------cttgaatac------taatt--------------- B D Chinese pangolin -----------tttgcatac------taatt--------------- B D Dog -----------cttgaatac------tgatt--------------- B D Hawaiian monk seal -----------cttgaatac------taatt--------------- B D Elephant ccttccattctcttgaatac------taattatgacattatcatgt B D Tenrec cagtctattattttgagtac------tgtttgtgacaatattttgt B D Opossum ============================================== B D Shrew ============================================== B D Hedgehog ============================================== B D Zebrafish ============================================== B D X. tropicalis ============================================== B D Chicken ============================================== B D Lamprey ============================================== Inserts between block 15 and 16 in window B D Pig 16bp B D Dolphin 15bp B D Cow 140bp B D Sheep 15bp B D Horse 15bp B D Chinese pangolin 15bp B D Dog 15bp B D Hawaiian monk seal 15bp Alignment block 16 of 438 in window, 37096302 - 37096453, 152 bps B D Mouse tctgatatgtgacatgggccgaggacgcagaataactga---------------------gtctg----- B D Rat gctaattcctggcat-ggctgaggatgcagaataactga---------------------gtctg----- GCF_003668045 tctgatttgaggcattggctgaggagtgagaataactga---------------------atctg----- Beaver tctg-tttggagcatgggctatggagtcagagaaactga---------------------gtgtag---- B D Squirrel tctggtttggaacactggctatgcattcaaaatagctga---------------------gtttgg---- B D Guinea pig tctggtttgtagcac-gacta--gagtaagaataattga---------------------atcttg---- B D Rabbit tctggtttacagcatgaactacaaagtcagaat--ctga---------------------gtttag---- B D Pika tctgcttaattgcatacactgtgaagtcagaat--ctaa---------------------atttat---- B D Human tctggtttagaatgt---ctgtggagtcagaatatctga---------------------atttgg---- B D Chimp tctggtttagaatgt---ctgtggagtcagaatatttga---------------------atttgg---- B D Bonobo tctggtttagaatgt---ctgtggagtcagaatatttga---------------------atttgg---- B D Gorilla tctggtttagaatgt---cgatggagtcagaatatctga---------------------atttgg---- B D Rhesus tttagtttagaatgt---ctatggagtcagaatatctca---------------------atttgg---- B D Marmoset tttggtttagaatgt---ctgtggagtcagaatatccaa---------------------atttgg---- B D Tarsier cctggtttggagtgtgggatgtggagtcagaatatttgg---------------------gtttag---- B D Bushbaby tctgtttcagagcataggctatggagtcagaatatctga---------------------ctttag---- B D Tree shrew tctggtttaga-catcgtctatggagtcagaatgtctga---------------------gtgtaattta B D Malayan flying lemur tctggttgagagcatagggtaaggagtcagaatgtctga---------------------gtttgg---- B D Pig tttggtttaaagcataagctacagaatgaacgtgtctga---------------------gtttgg---- B D Dolphin tctggtttagagcatgggctatggaatcagaatgtctga---------------------gtttgg---- B D Cow tctggttcagagcatgggctgtggaatcagaatgtctga---------------------atttgg---- B D Sheep tctggttcatagcatgggctatggaatcagaatgtctga---------------------atttgg---- B D Horse tctggtttagagcatgagttatggagtcagaaggtctca---------------------gtttgg---- B D Chinese pangolin ccttatttagagcacgtgctatggaatcagaatg----g---------------------atttgg---- B D Dog tctggtttagagcatgggctatggaatcaggatgtctga---------------------ttttgg---- B D Hawaiian monk seal tctggtttagagcatgggctgtggaatcagaatgtctgagctttggatttttttggagttttttgg---- B D Elephant tctagtttagaatatatgctgtggagtcaacgtct--gg---------------------gtttga---- B D Tenrec tctagtttagaacatgagctttggagtccaagtgtc-aa---------------------gtttga---- B D Opossum ====================================================================== B D Shrew ====================================================================== B D Hedgehog ====================================================================== B D Zebrafish ====================================================================== B D X. tropicalis ====================================================================== B D Chicken ====================================================================== B D Lamprey ====================================================================== Mouse ----tctgttaacctag---t-attaggcaggttat---------------------------------- Rat ----ttgattaacccag--at-attaggcagattat---------------------------------- GCF_003668045 --------ttaactttg--at-tttagacaggttat---------------------------------- Beaver ---gtttattagctgtgtgat-agtaggcaggttat---------------------------------- Squirrel ---atttattaact--g--at-attagatagattaa---------------------------------- Guinea pig ---atttgttagctgtgtaat-attaggcaaattat---------------------------------- Rabbit ---atttgctg----tg--tt-attaggcagattat---------------------------------- Pika ---atttattgcc--tt--tt-attaggcagattat---------------------------------- Human ---atttattaggtga--------taagcaggtcat---------------------------------- Chimp ---atttattaggtga--------taagcaggtcat---------------------------------- Bonobo ---atttattaggtga--------taagcaggtcat---------------------------------- Gorilla ---atttattaggtga--------taagcaggtcat---------------------------------- Rhesus ---atttactaggtgagtggt-attaagcagatcat---------------------------------- Marmoset ---atttattaggcaagtgat-agtaagatcatctt---------------------------------- Tarsier ---atttattagctgtgtgaa-aatgggcaaaccactcagcacaaaattattatcacaagataaaatttt Bushbaby ---attcattatttgtgtgat-actaggcagatagt---------------------------------- Tree shrew tttatttattatttgtgtgat-attaggtag---ac---------------------------------- Malayan flying lemur ---agttattagctgtgtgac-attaggcagatcat---------------------------------- Pig ---atttattagctgtgtcat-gttaggtagattat---------------------------------- Dolphin ---atttattacctgtgtcat-attaggcag--------------------------------------- Cow ---atttactggctgtgtcat-gttacacagtttat---------------------------------- Sheep ---atttattgactgtgtcat-gttatacagtttat---------------------------------- Horse ---atttattagctgtgtcat-attaggcagattat---------------------------------- Chinese pangolin ---atttattagctatgttat-atcaggcagattat---------------------------------- Dog ---atttattagctgtgttat-atgagacagattat---------------------------------- Hawaiian monk seal ---atttattagctgtgtcat-attaggcagattat---------------------------------- Elephant ---atttgtgagctctgtgat-attaggtggatcat---------------------------------- Tenrec ---attgaagagctgagtaataattagatggatcat---------------------------------- Opossum ====================================================================== Shrew ====================================================================== Hedgehog ====================================================================== Zebrafish ====================================================================== X. tropicalis ====================================================================== Chicken ====================================================================== Lamprey ====================================================================== Mouse -----------catctttcacttagta-------attaagaaattagcgtgtatttatt-gagcaacaac Rat -----------tgtctttcactcagta-------attaagaaattagcttttagttatt-aagcaacaac GCF_003668045 -----------tatctttcactc---------------agaaattagcttgtatttattagaacaacaac Beaver -----------tattcttcactcagtg-------attcagaaattaacaaatatttagt-aag-gacaac Squirrel -----------tatttttcactcagta-------attcagtaattggcaaatatttatt-aagcaaaaaa Guinea pig -----------tgttttt-actcagtt--------ttcagtgattggcagatgtttatt-aagcga---- Rabbit -----------tttcactaatttag------------------------------tatt-aagcaataat Pika -----------tttcactaattgag------------------------------tatt-aagatgtaat Human -----------tattttc-acttagca-------attca---attggcaaatatttatt-aagctacaac Chimp -----------tattttc-acttagta-------attca---attggcaaatatttatt-aagctacaac Bonobo -----------tattttc-acttagta-------attca---attggcaaatatttatt-aagctacaac Gorilla -----------tattttc-acttagta-------attca---attggcaaa----tatt-aagctacaac Rhesus -----------tattttc-acttagta-------attca---attggcaaatatttatt-aagctacaac Marmoset -----------tattttt-acttagta-------attca---attggcaaatatttatt-aagctacaac Tarsier ataaaaataaatattttt-actcagta-------attca---attggcaaacatttatt-aagc-acagc Bushbaby -----------tattttc-aattagca-------attca---attggcagatatttatt-aagcagtagc Tree shrew -----------tattttc-actcagta-------attca---gtcagcaaatattta------------- Malayan flying lemur -----------tattgtc-actcagta-------attca---atcagcaaatatctatt-cagcaacaac Pig -----------tattttc-attcagta-------act----------caaatatgtatt-atatatcaac Dolphin ------------attttc-attcagta-------att----------caaatttttatt-atgtatcaac Cow -----------tattttc-agtcagtaattcaatatt----------caaa----attc-aaatatcaac Sheep -----------tattttc-agtcagta-------att----------caaa----tatt-atgtatcaac Horse -----------tattttc-actcagta-------attca---atcagcaaa----tatt-aagcatcaac Chinese pangolin -----------tattttc-acttagta-------attca---atcagcaaa-atttatt-aggtatcaat Dog -----------tattttc-actcaata-------attct---atcagcaaa--------------tcaat Hawaiian monk seal -----------tattttc-gctcagta-------attca---atcagcaag--------------tcagc Elephant -----------tcttttc-acttagta-------attca---atctgcatatgtttatt-aaggaacaac Tenrec -----------tctgttc-actcagta-------attga---accagcttcgatatatt-aagtagcaaa Opossum ====================================================================== Shrew ====================================================================== Hedgehog ====================================================================== Zebrafish ====================================================================== X. tropicalis ====================================================================== Chicken ====================================================================== Lamprey ====================================================================== Mouse tacatgctt-tcatacttctctaggcacaa Rat tacatgctt-tggtacttctctaggcacaa GCF_003668045 tatatgctt-tggtacttctctagacacaa Beaver agtgtgctt-aggcactgttctaagtacaa Squirrel catgtgttt-aggtactgttctagtcataa Guinea pig --tatagtt-tagtcatgttctag--acag Rabbit catgttatt-aggcactattctgggtataa Pika catatgcttaaggcactattctaggcatga Human catgtgctt-aggcactattctaggcacag Chimp catgtgctt-aggcactattctaggcacag Bonobo catgtgctt-aggcactattctaggcacag Gorilla catgtgctt-aggcactattctaggcacag Rhesus catgtgctt-aggcactattctaggcacag Marmoset catgtactt-aagcactattctagacacag Tarsier tttgtgctt-aggcactcttctaagcac-- Bushbaby cacattctt-aggcactattctaggcacaa Tree shrew -------tt-aagcactcttctaggcatag Malayan flying lemur catgtactt-aggcactgttctgggcacag Pig cacgttctt-aagcactgttttagacatac Dolphin cgtgttctt-aagcactgttttaggcatag Cow catgttctt-aagcactgttttaggaatag Sheep catgttctt-aagcactgttttaggcatag Horse cgtgttctt-aagcactacaggagatagag Chinese pangolin catattttt-acacactgtttcagacacaa Dog tatgttctt-aagtatggttttaggcatag Hawaiian monk seal tatattctt-aagcactgttttaggcatag Elephant catgtgctt-aggcactgttctaggtgcag Tenrec catgtgctt-aggcactatgctgggtgtag Opossum ============================== Shrew ============================== Hedgehog ============================== Zebrafish ============================== X. tropicalis ============================== Chicken ============================== Lamprey ============================== Inserts between block 16 and 17 in window B D Tenrec 26bp Alignment block 17 of 438 in window, 37096454 - 37096478, 25 bps B D Mouse gagttgcaa--gat-atg--ccatcactaa- B D Rat gagttgcaa--gat-atg-accatccctaa- GCF_003668045 gagttgcaa--gttaatg-actatccctac- Beaver gagatttagt-ggt-aagcacattctctac- B D Squirrel gagatctagt-agt-aggtacaatccctgc- B D Guinea pig gagatccagt-ggt-agacacagtccttac- B D Rabbit gagagagagt-ggt-ggaaaaagtccctac- B D Pika gaaatcaatt-ggt--gaaaaagttcctac- B D Human gagatctagt-ggt-ggacagaatcactac- B D Chimp gagatctagt-ggt-ggacagaatcactac- B D Bonobo gagatctaat-ggt-ggacagaatcactac- B D Gorilla gagatctagt-ggt-ggacagaatcactac- B D Rhesus gagatctagt-gat-ggacagcat------- B D Marmoset gaaatccagt-gat-ggacagaattactac- B D Tarsier --tacctagt-ggt-ggacagaatggctac- B D Bushbaby tagatctagt-agt-ggacagagtcactac- B D Tree shrew gagatctaat-gat-agacagagtccttac- B D Malayan flying lemur gagatctagt-ggt-agacaaagtctctgc- B D Pig aagatgtatt-agt-ggtcaga-----tgt- B D Dolphin gagatctactaagt-agaaaaaattcctat- B D Cow gggatctact-agt-ggaaaaagttcctat- B D Sheep ggggtctacc-agt-ggaaaaagttcctat- B D Horse gagatctcct-agt-gcacaaagttcctac- B D Chinese pangolin gagatccact-agt-agacaaagtttctac- B D Dog catgtctact-agt-agacaaaat---tat- B D Hawaiian monk seal gagatctcct-agt-agacaaagttcctac- B D Elephant ---atctcgt-ggt-ggacaaagttcctacc B D Opossum =============================== B D Shrew =============================== B D Hedgehog =============================== B D Tenrec =============================== B D Zebrafish =============================== B D X. tropicalis =============================== B D Chicken =============================== B D Lamprey =============================== Alignment block 18 of 438 in window, 37096479 - 37096511, 33 bps B D Mouse c-tcatgaa-ccttacattcaaataggagatgg----ag B D Rat c-tcatgag-ctttacattcaaataggagctgg----ag GCF_003668045 c-tcatgaa-cctcacattcaaataggagaggg----ag Beaver cttcatgaagctttacattctaaatgggatgat----ag B D Squirrel cctcatgaa-gcttatattgtaataggagagac----ag B D Guinea pig ccttaagaa-gtttacattctact----gagat----ag B D Rabbit cctcatgaa-gtttcaattctaacaaaagagac----aa B D Pika gctcttgaa-gcttaaattctaactgaagagac----tg B D Human cctcatgaa-gctcagattctaatgggagagaa----ag B D Chimp cctcatgaa-gctcagcttctaatgggagagaa----ag B D Bonobo cctcatgaa-gctcagattctaatgggagagaa----ag B D Gorilla cctcatgaa-gctcagattctaatgggagagaa----ag B D Rhesus --------------agattctaatgggagagaa----ag B D Marmoset cctcttgaa-gcttaaactataatgggagagaa----ag B D Tarsier cctcatgga-acttacattctaatgggaaagac----ag B D Bushbaby tcttatg-------aaattctaataggacagtg----ga B D Tree shrew cttaatgaa-gcttacattccattggcaaagac----ag B D Malayan flying lemur cttcatgaa-gcttacattctaatggaaaagacagagag B D Pig tttcatgaa-gcttacattgtaatgggagagaca---ag B D Dolphin cctcatgga-gcttacattttaatgggagagac----ag B D Cow tctcc------attaaattttaatgggagagac----ag B D Sheep tctcc------attaaattttaatgggagagac----ag B D Horse cctcatgaa-gcttacattctaatgggagagat----ag B D Chinese pangolin ccacatgaa-gcttacattctgttgggggagac----ag B D Dog ctacataaa-gctt-tgttctaat-ggagagat----ag B D Hawaiian monk seal ctatataaa-gctt-tgttctaatgggagagat----ag B D Elephant -ctcatgga-gcttatattctaatggaagagac----ag B D Tenrec -ctcgtggg-gcttgtattcagatgacacagcc----ag B D Opossum ======================================= B D Shrew ======================================= B D Hedgehog ======================================= B D Zebrafish ======================================= B D X. tropicalis ======================================= B D Chicken ======================================= B D Lamprey ======================================= Inserts between block 18 and 19 in window B D Bushbaby 2788bp Alignment block 19 of 438 in window, 37096512 - 37096632, 121 bps B D Mouse actataattaa----------------atatataaaagtca--tggtttcaggtagataga-agtgc--- B D Rat acgataactga----------------atatataaaagcca--tggtttcagg----taga-agtgc--- GCF_003668045 actgtaattaa----------------atgcataaatgaca--tgattttaggtagataga-agtta--- Beaver actataattaatatact----------aactaaaaatattaggtaatttcagg----tagagagttc--- B D Squirrel actataaataatttgcta--------attaaatatatgaaa--taatttaaggtagagaga-agtgc--- B D Guinea pig acaataagtaatttacta--------gatagatatatgagg--taatttcagg----taca-agtgc--- B D Rabbit accataattaacttacta--------cctaaatacgtaaga--taatttcatgtagagaga-agtgc--- B D Pika actttaattgcctgcata--------agcatatatatgtga--taatttcagatagagaga-tgttt--- B D Human accataataaatttacta--------actaaatatataaga--taatttcagtaagagaga-agtgc--- B D Chimp accataataaatttacta--------actaaatatataaga--taatttcagtaagagaga-agtgc--- B D Bonobo accataataaatttacta--------actaaatatataaga--taatttcagtaagagaga-agtgc--- B D Gorilla accataataaatttacta--------actaaatatataaga--taatttcagtaagagaga-agtgc--- B D Rhesus accctaacaaatttacta--------actaaatatgtaaga--taatttcagttagagaga-agtgctaa B D Marmoset accataataaatttacta--------actaaatatatacga--taatttcagtaagagaaa-agtgc--- B D Tarsier accataataaaattacta--------actaaatatatagaa--taatttcagttgg----a-agtgc--- B D Tree shrew actataa---------ca--------actaaatatataaga--t-acttcaggtaaagaaa-agtac--- B D Malayan flying lemur accacaattaactcacta--------actaaatatataaga--taatttcaggt----aga-agtgc--- B D Pig accataactaattcacta--------agtaaatctgtaaga--taatttcatgtagagaaa-gatgc--- B D Dolphin accataacaaatttgcta--------agtaagtatgtaaga--taatttcaggtagagaga-aatgc--- B D Cow accataa--------cta--------actaactgtgtaaga--taatttcaggtagagaga-aatgc--- B D Sheep accataa--------cta--------actaactgtgtaaga--taatttcaggtagagaga-aatgc--- B D Horse gccataattaatttacta--------actaattatgtaag----aatttcaggtagaa-----gtgc--- B D Chinese pangolin ctcatcattaatttactc--------------------------aatttctggtagaaaga-ggtac--- B D Dog accataattaatttgct---------actaaatatgtaaga--taatttcagataaaaaga-tgtgc--- B D Hawaiian monk seal actataattaatttactaacttactaactaaatacatcaga--taatttcagatagaaaga-cgtac--- B D Elephant accgtaactaccttacta--------actaaa-----aaga--ttatttcaggtagagaga-agtgc--- B D Tenrec aacataacatatttact---------actaaagatttaaga--tcatttcaggtagagaga-aatgc--- B D Opossum ====================================================================== B D Shrew ====================================================================== B D Hedgehog ====================================================================== B D Bushbaby ====================================================================== B D Zebrafish ====================================================================== B D X. tropicalis ====================================================================== B D Chicken ====================================================================== B D Lamprey ====================================================================== Mouse ttatgt------------aaaacacaaagc-at-gggaaggat-atagagaagg----tt--aaagtgaa Rat ttatttaaaaaaaaaaaaaaaaaacaaggc-gt-gggaaggat-acagagaagg----tt--aaagtgga GCF_003668045 ttgttt-------------aaaaacaaagc-aa-ggggaggat-ataaaaaagg----ct--aaggtgag Beaver tttcct-------------caaaacaaa------gggaaggat-atagggaa-t----ct--aagggtga Squirrel tgagaa-------------aagaacaaa------gggaagaat-atagaaatag--------agactaaa Guinea pig tgaga--------------aaaaacaaa------acagaggat-agggagaata----tt--aaactgta Rabbit tgagga------------caagaacaaagc-ag-tggaagaat--------------------------- Pika tgagga------------aaggaacaaagg-aa-gagaaggat-g--------g----tt--aaa--aac Human taagca------------aaagaacaaaac----gggaagaat-atagagaatg----at--taaatgtg Chimp taagca------------aaagaacaaaac----gggaagaat-atagagaatg----at--taaatgtg Bonobo taagca------------aaagaacaaaac----gggaagaat-atagagaatg----at--taaatgtg Gorilla taagca------------aaagaacaaaac----gggaagaat-atagaaaatg----at--taaatgtg Rhesus taagca------------aaagaacaaaac-ag-gggaagaat-atagagaatg----at--taaatgtg Marmoset taagca------------aaagaacaaaaacag-aggaagaat-atagagaatg----at--taaatcta Tarsier tgagga------------aaagaacaaaac----agggtgaat-atagagaatg----at--aagatttg Tree shrew tgagta------------aa--gacaaagt-aa-gagaagcat-atagataatg----gt--aaggaatg Malayan flying lemur tgagaa------------aatgaacaaagt-ag-gggaaagac-a--------g----at--aaggtatg Pig tgagaa------------aaagaacaaagc-agagggaaggat-gtggtgaagg----at--ggtgtgtg Dolphin tgagaa------------aaagaacaaagc-ag-gggcaggatcacagagcctgtgatac--atactgtg Cow agagaa------------aaagaacaaagc-ag-gggaagaat-atagaaaatg----at--agtctgtg Sheep agagaa------------aaggaacaaagc-ag-gggaagaat-atagaaaatg----at--agtctgtg Horse tggaaa------------aaagaacaaagc-ag-gggaagga---tagagaatg----ac--agtgtgtg Chinese pangolin tgagaa------------aaggagcagagc-ag-gggaaggag-ctaaagatag----at--ggcacgtg Dog tgaaaa---------------------acc-ag-gagaaggag-atgaagaata----at--actgtgtt Hawaiian monk seal tgaaaa---------------------agc-ag-gagaaggag-ataaagaata----g-----tttgtg Elephant t-gaaa------------aaagaacaaagg-ag-gggaaggag-atacagaatg----ttgcagaatgtg Tenrec tggaaa------------aaagcagagagc-tg-gggaagaaa-ataaagaatg----gtacatagtgtg Opossum ====================================================================== Shrew ====================================================================== Hedgehog ====================================================================== Bushbaby ====================================================================== Zebrafish ====================================================================== X. tropicalis ====================================================================== Chicken ====================================================================== Lamprey ====================================================================== Mouse atgatggctatttcag----aaaagatg Rat ataatggctatttcag----aaaagatg GCF_003668045 aaaatggatatttcag----aaaagatg Beaver agaagagctgttttag----agaggctg Squirrel atcatggcatttgtaggtaaataagatg Guinea pig aggacagctattttag----agtaggta Rabbit --aatagctactttag----aa--agtg Pika aaaaaagctacttcag----aaagagtg Human aggatagctattttag----aaagggtg Chimp aggatagctattttag----aaagggtg Bonobo aggatagctattttag----aaagggtg Gorilla aggatagctattttag----aaagggtg Rhesus aggacagctattttag----aaagtgtg Marmoset aggatagctattttag----aaagggtg Tarsier aggataccta-tttag----aaagggta Tree shrew aggacagctatttaaa----aaag-gta Malayan flying lemur a-gagagctattttag----aaagagtg Pig aggatagctatttaag----aaagaatg Dolphin aggatagctgtttgag----aaagggtg Cow aggataaatattttag----aaagggtg Sheep aggataaatattttag----aaagggtg Horse aagatagctgttttag----aaaaggtg Chinese pangolin atggtagctgtgttag----aaaggttg Dog aggctagctagtttag----aaagg-tg Hawaiian monk seal aggccagctagtttag----aaaggttg Elephant aatgtagctactttgg----ttaaggtg Tenrec aaggcagc--ctgcac----atagggtg Opossum ============================ Shrew ============================ Hedgehog ============================ Bushbaby ============================ Zebrafish ============================ X. tropicalis ============================ Chicken ============================ Lamprey ============================ Inserts between block 19 and 20 in window B D Squirrel 543bp Alignment block 20 of 438 in window, 37096633 - 37096656, 24 bps B D Mouse atc-aggaaagccttgtc--tgaagtg B D Rat acc-agggaagccttgtc--tgacgtg GCF_003668045 att--gggaagccttttc--tgaaatg Beaver attaagagaatccttttc--tgaagtg B D Guinea pig acc-agagaa-ccttttc--tgaagtg B D Rabbit atc-agggaagccttttcaaaggagtg B D Pika agc-agagaaccattttt--aggaata B D Human atc-atttaggccttttc--tgaagtg B D Chimp atc-atttaggctttttc--tgaagtg B D Bonobo atc-atttaggctttttc--tgaagtg B D Gorilla atc-atttaggcctttta--tgaagtg B D Rhesus atc-atttaggccttttc--tgaagtg B D Marmoset atc-atttaggccttttc--tgaagtg B D Tarsier atc-agagaagacatttc--ggaagtg B D Tree shrew gtt-aggaaagccttttc--tgaagtg B D Malayan flying lemur atc-agagaaaccttttc--tgaagtg B D Pig gtc-agggaaacc-tttc--tgaagtg B D Dolphin gtc-aggaaaaccttttc--tgaagtg B D Cow gta-aaggaaaccttttc--taaaatg B D Sheep gta-aaggaaaccttttc--taaaatg B D Horse gtt-agggaagcctag----tgaagtg B D Chinese pangolin gtc-agggaagtcttttc--tcaagtg B D Dog gtc-agagaagccttt----taaagt- B D Hawaiian monk seal gtc-acagaagccttt----taaagt- B D Elephant ttc-agggaaaat-tttc--taaagtg B D Tenrec gtc-aagaaaaacatttc--cgatgtg B D Opossum =========================== B D Shrew =========================== B D Hedgehog =========================== B D Bushbaby =========================== B D Squirrel =========================== B D Zebrafish =========================== B D X. tropicalis =========================== B D Chicken =========================== B D Lamprey =========================== Inserts between block 20 and 21 in window B D Tree shrew 1665bp Alignment block 21 of 438 in window, 37096657 - 37096692, 36 bps B D Mouse acattttagtagaaatgagtcatttgat----gaaa--------gata B D Rat gcgtgttagtagaaatgagtgaatggat----aaga--------aacc GCF_003668045 acatgttaatagaaatgagtcaatagtt----gaaa--------gaac Beaver a-gtg-tggtagaaat--ttaaataaat----gaaa--------gaat B D Guinea pig acattttagtggaaatg------tgaat----aaaa--------ggac B D Rabbit acattttggtgggaatg----------t----gaag--------gagt B D Pika acatttcagtagaaatg----------t------aa--------taat B D Human acattttagtggaaatg------tgaat----gaaa--------gaac B D Chimp acattttagtggaaatg------tgaat----gaaa--------gaac B D Bonobo acattttagtggaaatg------tgaat----gaaa--------gaac B D Gorilla acattttagtggaaatg------tgaat----gaaa--------gaac B D Rhesus acattttagtggaaatg------tgaat----gaaa--------gaac B D Marmoset acattttagtggaaaca------tgaat------ca--------gaat B D Tarsier gaa---tggtgaa----------tgagt----gaca--------gaac B D Malayan flying lemur gcattttagcaaaaatg------tgaatgagtgaaa--------gaac B D Pig ---------------------------------aaa--------gagc B D Dolphin ---------------------------------gca----------gc B D Cow ---------------------------------aaa--------gagc B D Sheep ---------------------------------aaa--------gcgc B D Horse ---------------------------------aaa--------gatc B D Chinese pangolin ---------------------------------aca--------gatc B D Dog ----------------------------------------------tt B D Hawaiian monk seal ----------------------------------------------tc B D Elephant acattttagtggaaata------tgaat----gaagtaggttaagata B D Tenrec acattttaatggaaata------tgaat----gaat--------gata B D Opossum ================================================ B D Shrew ================================================ B D Hedgehog ================================================ B D Bushbaby ================================================ B D Squirrel ================================================ B D Tree shrew ================================================ B D Zebrafish ================================================ B D X. tropicalis ================================================ B D Chicken ================================================ B D Lamprey ================================================ Inserts between block 21 and 22 in window B D Tenrec 1462bp Alignment block 22 of 438 in window, 37096693 - 37096786, 94 bps B D Mouse tgagac---tgcatgt----t-gggaaa--------gttct---------------------gggcaaag B D Rat tgaggt---agcatgc----t-gggaaa--------gttct---------------------gagcagag GCF_003668045 tgagat---aagatat----gagggaaa--------gttct---------------------gggcagag Beaver taag--------atct----g-gcgaaa--------g---a---------------------ggacatgg B D Guinea pig aaaact---aagacct----a-ggggta---------ttct---------------------ggatatta B D Rabbit tgggtt---aagatct----g-gggagaa----agagttcc---------------------aggc---- B D Pika taggct---aagatgt----a-ggggaaa----agagttccaggctggagtgggtaggaggagggcaggg B D Human aaggct---aagatgt----g-ggggaag----agagttcc---------------------aggcatcg B D Chimp aaggct---aagatgt----g-ggggaag----agagttcc---------------------aggcattg B D Bonobo aaggct---aagatgt----g-ggggaag----agagttcc---------------------aggcatcg B D Gorilla aaggct---aagatgt----g-ggggaag----agagttcc---------------------aggcatcg B D Rhesus aaggct---gagatgt----g-ggggaag----agagtttc---------------------aggcatag B D Marmoset aaggct---aagatgt----g-ggagaag----agagttcc---------------------aggcatag B D Tarsier tacact---aagatct----g-gaggaag----agagttca---------------------aggtatag B D Malayan flying lemur taggct---aacatct----g-aggaaaaagacagagttac---------------------aggcaaag B D Pig tatgct---aaaatct----g-ggggaag----agacttct---------------------gtgcaaag B D Dolphin taggct---aagatct------ggggaag----agagttct---------------------gggcaaag B D Cow taggct---aagatct------tggaaga----agagttct---------------------aggcaaag B D Sheep taggct---aagatct------tgcaaga----aaagtttt---------------------aggcaaag B D Horse caggct---gagatct----g-gggagag----agagttct---------------------gggcattg B D Chinese pangolin taggcc---gagctct----t-ggagaag----agagctct---------------------ggccatag B D Dog taggctagaaagatctctgct-ggggaag----agagttct---------------------aggcatag B D Hawaiian monk seal taggctagaaagatctccact-ggggaag----agagttct---------------------ggacatag B D Elephant ------------------tga-ggggaag----atagttcc---------------------tggcatgg B D Opossum ====================================================================== B D Shrew ====================================================================== B D Hedgehog ====================================================================== B D Bushbaby ====================================================================== B D Tenrec ====================================================================== B D Squirrel ====================================================================== B D Tree shrew ====================================================================== B D Zebrafish ====================================================================== B D X. tropicalis ====================================================================== B D Chicken ====================================================================== B D Lamprey ====================================================================== Mouse gg-----ctgtggaggtctgaagctcctgttgtta-ctcataaagttggcttatttgagaatcatta Rat gg-----ctgtggaagtctgaagctcctgttgttc-ctcatagagttggc-tatttgagagtcattg GCF_003668045 gg-----ccatggaggtgtgaagctcctgttgttc-ctcacaaagttggattacttgagaatcattg Beaver ga-----atg-gaaggtctacagctcctacag-ta-ggaacaaacttggcttattagagaatcatca Guinea pig g----------ggagccgtgaagtgtcagtag-----gaacagccttggcgtatttgagaatcatta Rabbit ------------------------------------------------------------------- Pika gg-gacactg-aggaatacaaagttctcacag-ta-ggaacctgtgtggcttgtttgaggattgtta Human ggggatactg-ag---tccaaagttcccctag-ta-ggaacaaacttggc----ttgaggatcatta Chimp ggggatattg-ag---tccaaagttcccctag-ta-ggaacaaacttggc----ttgaggatcatta Bonobo ggggatactg-ag---tccaaagttcccctag-ta-ggaacaaacttggc----ttgaggatcatta Gorilla ggggatactg-ag---tccaaagttcccctag-ta-ggaacaaacttggc----ttgaggatcatta Rhesus ggggatactg-ag---tccaaagttcccctag-ta-ggaacaaacttggc----ttgaggatcatta Marmoset gtggatattg-ag---tccaaagttcccatag-ta-ggaacaaacttggc----ttaagaatcatta Tarsier ggggctgttg-agggctctgaaactcttgtag-ta-ggaacacactt-gt----ttgaggat----- Malayan flying lemur ggagtcattg-aggggtccaaagcttctgcaa-ta-ggaacaaacttagcttgtttgaggatcac-- Pig tgggctccta-aaaggtgcaaagctcctacag-tccggagtaaactt-gattgtttgaggatcagt- Dolphin tgggcaactg-aaaggtgcaaagctcctagag-tcgggaggaaactt-gcttgtttgaggatcatt- Cow tgggctatga-gaaggtgcaaagcccctacag-ttgggaggaaactt-gcttgtttgatgatcatt- Sheep tgggctatga-gaaggtgcaaagcccttatag-ttgggaggaaactt-gcttgtttgatgatcatt- Horse agggttattg-aagagtacaaagctcctacag-ta-ggaggaaacttggcttgtttgagtatcatta Chinese pangolin ggggccactg-aagggttcaaggctcctactg-ta-ggaagaaacttggcttgtctggggatcatta Dog ggatttgttg-aaaagggcaaagctcctacag-ta--gaagaaacttggcttatttgaggatcatta Hawaiian monk seal gggcctattg-acaagtgcaaagctcctacgg-ta--gaagaaact--gtctatttgaggatcatta Elephant gg-gctgttg-agggatgcaaatctcttgca--ta-ggaacaaactgggcttgtttgagaaacatga Opossum =================================================================== Shrew =================================================================== Hedgehog =================================================================== Bushbaby =================================================================== Tenrec =================================================================== Squirrel =================================================================== Tree shrew =================================================================== Zebrafish =================================================================== X. tropicalis =================================================================== Chicken =================================================================== Lamprey =================================================================== Inserts between block 22 and 23 in window Beaver 93bp B D Marmoset 184bp Alignment block 23 of 438 in window, 37096787 - 37096792, 6 bps B D Mouse ctggac B D Rat ctggac GCF_003668045 ctggac B D Guinea pig aggtac B D Pika cagtac B D Dog ------ B D Rhesus ------ B D Sheep ------ B D Horse ------ B D Hawaiian monk seal ------ B D Gorilla ------ B D Bonobo ------ B D Chimp ------ B D Human ------ B D Marmoset ====== B D Opossum ====== B D Pig ------ B D Chinese pangolin ------ Beaver ====== B D Shrew ====== B D Cow ------ B D Elephant ------ B D Dolphin ------ B D Hedgehog ====== B D Tarsier ------ B D Rabbit ------ B D Bushbaby ====== B D Tenrec ====== B D Squirrel ====== B D Tree shrew ====== B D Zebrafish ====== B D Malayan flying lemur ------ B D X. tropicalis ====== B D Chicken ====== B D Lamprey ====== Inserts between block 23 and 24 in window B D Pika 1051bp Alignment block 24 of 438 in window, 37096793 - 37096794, 2 bps B D Mouse ct B D Rat ct GCF_003668045 ct B D Guinea pig ct B D Rabbit at B D Dog -- B D Rhesus -- B D Sheep -- B D Horse -- B D Hawaiian monk seal -- B D Gorilla -- B D Bonobo -- B D Chimp -- B D Human -- B D Marmoset == B D Opossum == B D Pig -- B D Chinese pangolin -- Beaver == B D Shrew == B D Cow -- B D Elephant -- B D Dolphin -- B D Hedgehog == B D Pika == B D Tarsier -- B D Bushbaby == B D Tenrec == B D Squirrel == B D Tree shrew == B D Zebrafish == B D Malayan flying lemur -- B D X. tropicalis == B D Chicken == B D Lamprey == Inserts between block 24 and 25 in window B D Rat 617bp B D Guinea pig 5bp B D Rabbit 1bp Alignment block 25 of 438 in window, 37096795 - 37096797, 3 bps B D Mouse gg--------------g GCF_003668045 aatggcacagttctcta B D Guinea pig ggtagagcacatgtaaa B D Rabbit gg--------------- B D Dog ----------------- B D Rhesus ----------------- B D Sheep ----------------- B D Horse ----------------- B D Hawaiian monk seal ----------------- B D Gorilla ----------------- B D Bonobo ----------------- B D Chimp ----------------- B D Human ----------------- B D Marmoset ================= B D Opossum ================= B D Pig ----------------- B D Chinese pangolin ----------------- B D Rat ================= Beaver ================= B D Shrew ================= B D Cow ----------------- B D Elephant ----------------- B D Dolphin ----------------- B D Hedgehog ================= B D Pika ================= B D Tarsier ----------------- B D Bushbaby ================= B D Tenrec ================= B D Squirrel ================= B D Tree shrew ================= B D Zebrafish ================= B D Malayan flying lemur ----------------- B D X. tropicalis ================= B D Chicken ================= B D Lamprey ================= Alignment block 26 of 438 in window, 37096798 - 37096832, 35 bps B D Mouse atcttaacc-----cttgggaaggtg-------------------------a------------------ B D Rat atcttaact----acttgggaagctg-------------------------a------------------ GCF_003668045 atcacaact----acttgggaaactg-------------------------a------------------ B D Guinea pig atgttaaacatgaattcagaaaagta-------------------------ggccacagataagcttgta B D Rabbit ---------------------------------------------------------------------- B D Tarsier ---------------atctgcagct--------------------------------------------- B D Malayan flying lemur -------------------gaaggt--------------------------------------------- B D Pig --------------------aaggtg-------------------------------------------- B D Dolphin --------------------aaggtg-------------------------------------------- B D Cow --------------------gaggtg-------------------------------------------- B D Sheep --------------------gaggtg-------------------------------------------- B D Chinese pangolin ---------------------agatgggcactgtagtgaaacagtgagcga------------------- B D Dog ---------------------aggcgactac--------------------------------------- B D Rhesus ---------------------------------------------------------------------- B D Horse ---------------------------------------------------------------------- B D Hawaiian monk seal ---------------------------------------------------------------------- B D Gorilla ---------------------------------------------------------------------- B D Bonobo ---------------------------------------------------------------------- B D Chimp ---------------------------------------------------------------------- B D Human ---------------------------------------------------------------------- B D Marmoset ====================================================================== B D Opossum ====================================================================== Beaver ====================================================================== B D Shrew ====================================================================== B D Elephant ---------------------------------------------------------------------- B D Hedgehog ====================================================================== B D Pika ====================================================================== B D Bushbaby ====================================================================== B D Tenrec ====================================================================== B D Squirrel ====================================================================== B D Tree shrew ====================================================================== B D Zebrafish ====================================================================== B D X. tropicalis ====================================================================== B D Chicken ====================================================================== B D Lamprey ====================================================================== Mouse -----ggcagtagact-ac Rat -----ggcaggagact-ac GCF_003668045 -----ggcaggag------ Guinea pig aatacggcaagaagctaat Rabbit -----ggtggggggtgcac Tarsier ------------------- Malayan flying lemur ------------------- Pig ------------------- Dolphin ------------------- Cow ------------------- Sheep ------------------- Chinese pangolin ------------------- Dog ------------------- Rhesus ------------------- Horse ------------------- Hawaiian monk seal ------------------- Gorilla ------------------- Bonobo ------------------- Chimp ------------------- Human ------------------- Marmoset =================== Opossum =================== Beaver =================== Shrew =================== Elephant ------------------- Hedgehog =================== Pika =================== Bushbaby =================== Tenrec =================== Squirrel =================== Tree shrew =================== Zebrafish =================== X. tropicalis =================== Chicken =================== Lamprey =================== Inserts between block 26 and 27 in window B D Malayan flying lemur 1bp B D Chinese pangolin 6bp Alignment block 27 of 438 in window, 37096833 - 37096887, 55 bps B D Mouse agatc--aagttcaaagg-----------------cagcttggataac------ttagggtaagaccctg B D Rat agatc--aagttcagagt----------------tcaacttgggcaac------ttagtataagaccctg GCF_003668045 -gatcataagttcaaggc-----------------cagcttgaacta-------ttagtatgagaccc-a B D Guinea pig aga----gagttttgagcagatttattatttgatttaccttaaaatactcctttttaaagcatcactttg B D Rabbit tgag---gagtccaaagt------------------------------------tt-------------- B D Dog ---------------------------------------------------------------------- B D Rhesus ---------------------------------------------------------------------- B D Sheep ---------------------------------------------------------------------- B D Horse ---------------------------------------------------------------------- B D Hawaiian monk seal ---------------------------------------------------------------------- B D Gorilla ---------------------------------------------------------------------- B D Bonobo ---------------------------------------------------------------------- B D Chimp ---------------------------------------------------------------------- B D Human ---------------------------------------------------------------------- B D Marmoset ====================================================================== B D Opossum ====================================================================== B D Pig ---------------------------------------------------------------------- B D Chinese pangolin ====================================================================== Beaver ====================================================================== B D Shrew ====================================================================== B D Cow ---------------------------------------------------------------------- B D Elephant ---------------------------------------------------------------------- B D Dolphin ---------------------------------------------------------------------- B D Hedgehog ====================================================================== B D Pika ====================================================================== B D Tarsier ---------------------------------------------------------------------- B D Bushbaby ====================================================================== B D Tenrec ====================================================================== B D Squirrel ====================================================================== B D Tree shrew ====================================================================== B D Zebrafish ====================================================================== B D Malayan flying lemur ====================================================================== B D X. tropicalis ====================================================================== B D Chicken ====================================================================== B D Lamprey ====================================================================== Mouse tct--------cagaatg Rat tct--------caaaaaa GCF_003668045 tct--------caaaatg Guinea pig gctactgtgtgcagaata Rabbit tca--------cagcaag Dog ------------------ Rhesus ------------------ Sheep ------------------ Horse ------------------ Hawaiian monk seal ------------------ Gorilla ------------------ Bonobo ------------------ Chimp ------------------ Human ------------------ Marmoset ================== Opossum ================== Pig ------------------ Chinese pangolin ================== Beaver ================== Shrew ================== Cow ------------------ Elephant ------------------ Dolphin ------------------ Hedgehog ================== Pika ================== Tarsier ------------------ Bushbaby ================== Tenrec ================== Squirrel ================== Tree shrew ================== Zebrafish ================== Malayan flying lemur ================== X. tropicalis ================== Chicken ================== Lamprey ================== Alignment block 28 of 438 in window, 37096888 - 37096915, 28 bps B D Mouse aaa-tggtcactatagt----------------ctggaga----tacaa B D Rat aaagtggtcacaatgat----------------ctggggg----tgtaa GCF_003668045 aaa-tagtcacaatggt----------------ctgggga----tataa B D Guinea pig gaa-tagatccagtgat----------------gtggaaccttttagag B D Rabbit aac-agatctggcttgt----------------ttgagga----tt--- B D Human agg-ttgccactgtgg-----------------ctggaac--------- B D Chimp agg-ttgccactgtgg-----------------ctggaac--------- B D Bonobo agg-ttgccactgtgg-----------------ctggaac--------- B D Gorilla agg-ttgccactgtgg-----------------ctggaac--------- B D Rhesus agg-ttgccactgtgg-----------------ctggaac--------- B D Malayan flying lemur ------gccacaatgg-----------------ctg------------- B D Pig -----gcccactgtggt-------------------------------- B D Dolphin -----gcccactgtggt-------------------------------- B D Cow -----gcccactgtggt-------------------------------- B D Sheep -----gcccactatggt-------------------------------- B D Horse agg-tggtcactgtggt-------------------------------- B D Chinese pangolin aaa-ggctggatgtgaattcagagagagaggcc---------------- B D Hawaiian monk seal agg-tggctactttggt-------------------------------- B D Elephant aag-tggccactgtggc-------------------------------- B D Dog ------------------------------------------------- B D Marmoset ================================================= B D Opossum ================================================= Beaver ================================================= B D Shrew ================================================= B D Hedgehog ================================================= B D Pika ================================================= B D Tarsier ------------------------------------------------- B D Bushbaby ================================================= B D Tenrec ================================================= B D Squirrel ================================================= B D Tree shrew ================================================= B D Zebrafish ================================================= B D X. tropicalis ================================================= B D Chicken ================================================= B D Lamprey ================================================= Inserts between block 28 and 29 in window B D Guinea pig 2bp B D Bonobo 2bp B D Chinese pangolin 133bp Alignment block 29 of 438 in window, 37096916 - 37096938, 23 bps B D Mouse ttcagtggtagggcccttgcctg B D Rat ttcagtggtagggcccttgcctg B D Guinea pig ttaaatgatagaacctatgtgtg B D Rabbit ----gttatggggccattg---- B D Dog ----------------------- B D Rhesus ----------------------- B D Sheep ----------------------- B D Horse ----------------------- B D Hawaiian monk seal ----------------------- B D Gorilla ----------------------- B D Bonobo ======================= B D Chimp ----------------------- B D Human ----------------------- B D Marmoset ======================= B D Opossum ======================= B D Pig ----------------------- B D Chinese pangolin ======================= Beaver ======================= B D Shrew ======================= B D Cow ----------------------- B D Elephant ----------------------- B D Dolphin ----------------------- B D Hedgehog ======================= B D Pika ======================= B D Tarsier ----------------------- GCF_003668045 ----------------------- B D Bushbaby ======================= B D Tenrec ======================= B D Squirrel ======================= B D Tree shrew ======================= B D Zebrafish ======================= B D Malayan flying lemur ----------------------- B D X. tropicalis ======================= B D Chicken ======================= B D Lamprey ======================= Inserts between block 29 and 30 in window B D Guinea pig 234bp Alignment block 30 of 438 in window, 37096939 - 37096962, 24 bps B D Mouse acatgttctcaatggacgtgggga B D Rat acatgttctcaatggatgcgggga B D Dog ------------------------ B D Rhesus ------------------------ B D Guinea pig ======================== B D Sheep ------------------------ B D Horse ------------------------ B D Hawaiian monk seal ------------------------ B D Gorilla ------------------------ B D Bonobo ======================== B D Chimp ------------------------ B D Human ------------------------ B D Marmoset ======================== B D Opossum ======================== B D Pig ------------------------ B D Chinese pangolin ======================== Beaver ======================== B D Shrew ======================== B D Cow ------------------------ B D Elephant ------------------------ B D Dolphin ------------------------ B D Hedgehog ======================== B D Pika ======================== B D Tarsier ------------------------ GCF_003668045 ------------------------ B D Rabbit ------------------------ B D Bushbaby ======================== B D Tenrec ======================== B D Squirrel ======================== B D Tree shrew ======================== B D Zebrafish ======================== B D Malayan flying lemur ------------------------ B D X. tropicalis ======================== B D Chicken ======================== B D Lamprey ======================== Alignment block 31 of 438 in window, 37096963 - 37096974, 12 bps B D Mouse tttgaggggaaa B D Rat tttgaggg-aaa B D Dog tttg-------- B D Rhesus ------------ B D Guinea pig ============ B D Sheep ------------ B D Horse ------------ B D Hawaiian monk seal ------------ B D Gorilla ------------ B D Bonobo ============ B D Chimp ------------ B D Human ------------ B D Marmoset ============ B D Opossum ============ B D Pig ------------ B D Chinese pangolin ============ Beaver ============ B D Shrew ============ B D Cow ------------ B D Elephant ------------ B D Dolphin ------------ B D Hedgehog ============ B D Pika ============ B D Tarsier ------------ GCF_003668045 ------------ B D Rabbit ------------ B D Bushbaby ============ B D Tenrec ============ B D Squirrel ============ B D Tree shrew ============ B D Zebrafish ============ B D Malayan flying lemur ------------ B D X. tropicalis ============ B D Chicken ============ B D Lamprey ============ Alignment block 32 of 438 in window, 37096975 - 37096998, 24 bps B D Mouse tgagagtcattaaaataac-----tgaac B D Rat tgaggggcattaaaataacctc--tgaac B D Squirrel tgagaaccattaaggcaggcactgtgaca B D Rabbit ------------------------tagct B D Dog --------------gt------------- B D Elephant ------------------------t---- B D Rhesus ----------------------------- B D Guinea pig ============================= B D Sheep ----------------------------- B D Horse ----------------------------- B D Hawaiian monk seal ----------------------------- B D Gorilla ----------------------------- B D Bonobo ============================= B D Chimp ----------------------------- B D Human ----------------------------- B D Marmoset ============================= B D Opossum ============================= B D Pig ----------------------------- B D Chinese pangolin ============================= Beaver ============================= B D Shrew ============================= B D Cow ----------------------------- B D Dolphin ----------------------------- B D Hedgehog ============================= B D Pika ============================= B D Tarsier ----------------------------- GCF_003668045 ----------------------------- B D Bushbaby ============================= B D Tenrec ============================= B D Tree shrew ============================= B D Zebrafish ============================= B D Malayan flying lemur ----------------------------- B D X. tropicalis ============================= B D Chicken ============================= B D Lamprey ============================= Alignment block 33 of 438 in window, 37096999 - 37097011, 13 bps B D Mouse agagcagaatgat B D Rat ggagcagaatgat B D Squirrel agtgcc-agtgag B D Rabbit taagcagaatgag B D Human ----agaaatgag B D Chimp ----agaaatgag B D Bonobo ----agaaatgag B D Gorilla ----agaaatgag B D Rhesus ----agaaatgag B D Tarsier ggagcagaatgag B D Malayan flying lemur -gaacagaatgag B D Pig ggaacagagtgag B D Dolphin ggaacagagtgag B D Cow gaaacagagtgag B D Sheep gaaacagagtgag B D Horse ggaacagagtgag B D Dog ggaaaagagtgag B D Hawaiian monk seal gaaacagagtgaa B D Elephant ggagcagagtgag B D Guinea pig ============= B D Marmoset ============= B D Opossum ============= B D Chinese pangolin ============= Beaver ============= B D Shrew ============= B D Hedgehog ============= B D Pika ============= GCF_003668045 ------------- B D Bushbaby ============= B D Tenrec ============= B D Tree shrew ============= B D Zebrafish ============= B D X. tropicalis ============= B D Chicken ============= B D Lamprey ============= Alignment block 34 of 438 in window, 37097012 - 37097057, 46 bps B D Mouse cagtaagaaaaatattggacattat-ctc--aga---taaaaggcaaaaata---- B D Rat cagtaagaacaatattgg---ttaa-ctc--agg---tgcaggacaaaaata---- B D Squirrel cagtgaggagaatggtgaacatgaa-ttcagagg---tgtagaccacagaca---- B D Rabbit caaggaggcaaatgctggacatcaa-ttc----------------aaacata---- B D Human caaggacgaaaatgccggacatgaa-ttcacaga---ggtctactaca-------- B D Chimp caaggacgaaaatgccggacatgaa-ttcacaga---ggtctactaca-------- B D Bonobo caaggacgaaaatgccggacatgaa-ttcacaga---ggtctactaca-------- B D Gorilla caaggacgaaaatgccggacatgaa-ttcacaga---ggtctactaca-------- B D Rhesus caagtatgaaaatgctggatatgaa-ttcacaga---ggtatacccca-------- B D Marmoset cagggagaggaacatc--------a-cacactgg---ggcctataagg-------- B D Tarsier caaagaggaaa---ctggacatgaa-ttca---a---attatgccaca-------- B D Malayan flying lemur caaggaggaaaatgttggacataaatttcagaga---agtaggcctca-------- B D Pig caagcaggaaaatactggacatgaa-ttcagaga---ggccacagata-------- B D Dolphin caagcaagaaaacactggacacgaa-cttagaga---ggccaaagaga-------- B D Cow caagcaggaaaatactgaacatgaa-ttcagaga---agctgcagata-------- B D Sheep caagcaggaaaatactgaacatgaa-ttcaaaga---agccgcagata-------- B D Horse caaacaggaaaatcttgggtgtgaa-ttcagaggatagaccacagaca-------- B D Dog caagcaggaaaatgtcagacatgaa-t----------ggccacagata-------- B D Hawaiian monk seal caagcaggaaagtgtcggatatgaa-t----------ggccaaagata-------- B D Elephant cagggaggaaaggcttagacatgaa-ttcagaga---ggtaggccaca----gatc B D Guinea pig ======================================================== B D Opossum ======================================================== B D Chinese pangolin ======================================================== Beaver ======================================================== B D Shrew ======================================================== B D Hedgehog ======================================================== B D Pika ======================================================== GCF_003668045 -------------------------------------------------------- B D Bushbaby ======================================================== B D Tenrec ======================================================== B D Tree shrew ======================================================== B D Zebrafish ======================================================== B D X. tropicalis ======================================================== B D Chicken ======================================================== B D Lamprey ======================================================== Inserts between block 34 and 35 in window B D Human 4bp B D Chimp 3bp B D Bonobo 3bp B D Gorilla 4bp B D Rhesus 4bp B D Marmoset 119bp B D Tarsier 4bp B D Malayan flying lemur 4bp Alignment block 35 of 438 in window, 37097058 - 37097064, 7 bps B D Mouse aggtttt B D Rat agtattt B D Squirrel ggattgt B D Rabbit ggattgt B D Human agatttt B D Chimp agatttt B D Bonobo agatttt B D Gorilla agatttt B D Rhesus agatttt B D Tarsier agatttt B D Malayan flying lemur agatttt B D Pig agatttt B D Dolphin agatttt B D Cow agatttt B D Sheep agatttt B D Horse agatttt B D Dog agatttt B D Hawaiian monk seal agatttt B D Elephant agatttt B D Guinea pig ======= B D Marmoset ======= B D Opossum ======= B D Chinese pangolin ======= Beaver ======= B D Shrew ======= B D Hedgehog ======= B D Pika ======= GCF_003668045 ------- B D Bushbaby ======= B D Tenrec ======= B D Tree shrew ======= B D Zebrafish ======= B D X. tropicalis ======= B D Chicken ======= B D Lamprey ======= Alignment block 36 of 438 in window, 37097065 - 37097111, 47 bps B D Mouse taatatgatgagta----ttgtagagtt---tttaagacatt----tgg---tatc----atttg B D Rat ----------agta----ttgtagagtt---tttaagatagt----tgg---tatc----ttttg B D Squirrel cagtcattggaagc----tgttggagtt---ttgaacatatg----tat---tttc----actt- B D Guinea pig taacatgtaatgta----ttacgtagtt---attctattatt----ttg---ttatgaaattttg B D Rabbit taatacaatgggtagcttctggagagttttgttgaacagata----tga---tacc---attttg B D Human taatatgatggttagctatcagagagtt---ttaaacagatt----tga---tatc----gg--- B D Chimp taatatgatggttagctatcagagagtt---ttaaacagatt----tga---tatc----tg--- B D Bonobo taatatgatggttagctatcagagagtt---ttaaacagatt----tga---tatc----tg--- B D Gorilla taatatgatggttagctatcagagagtt---ttaaacagatt----tga---tatc----tg--- B D Rhesus taatatgatggttagctatcagagagtt---ttaaacagatc----tga---tatc----tg--- B D Tarsier taacatgatgggtagctattaaagagt-------agcagctt----tga---tatc----tg--- B D Malayan flying lemur taatattatgggtaactattagagaatt---ttgaacaaatttttatat---aatt----tg--- B D Pig taatgtgattagcagcttttggagagtt---ttgaacagatt----tgatattatt----tg--- B D Dolphin taatatgatgggtagctattggagagct---ttgaacagatc----tgatattatt----tg--- B D Cow taatatgttggggagctactgaagaatt---ctgaacagatg----tgatactatt----tg--- B D Sheep taata-attggggagctactgaagaatt---ctgaacagatg----tgatactatt----tg--- B D Horse taataagatgggtaactattggagactt---ttgagtagatt----tggtattatt----tg--- B D Dog gaatacgatatgtag-tactggagagtt---ctgaacagatt----tga---tact----tg--- B D Hawaiian monk seal gaatatgatggctagctattggagagtt---ctgaacagatt----tcg---tatt----tg--- B D Elephant taatacaaaggatagctattggagagtt---ttgaacagagt----tgacatcatt----tg--- B D Marmoset ================================================================= B D Opossum ================================================================= B D Chinese pangolin ================================================================= Beaver ================================================================= B D Shrew ================================================================= B D Hedgehog ================================================================= B D Pika ================================================================= GCF_003668045 ----------------------------------------------------------------- B D Bushbaby ================================================================= B D Tenrec ================================================================= B D Tree shrew ================================================================= B D Zebrafish ================================================================= B D X. tropicalis ================================================================= B D Chicken ================================================================= B D Lamprey ================================================================= Alignment block 37 of 438 in window, 37097112 - 37097115, 4 bps B D Mouse gttt B D Rat gttt B D Guinea pig tttt B D Rabbit attt B D Human attt B D Chimp attt B D Bonobo attt B D Gorilla attt B D Rhesus attt B D Marmoset gtat B D Tarsier attt B D Malayan flying lemur attt B D Pig attt B D Dolphin attc B D Cow attt B D Sheep attt B D Horse attt B D Dog attt B D Hawaiian monk seal attt B D Elephant attt B D Opossum ==== B D Chinese pangolin ==== Beaver ==== B D Shrew ==== B D Hedgehog ==== B D Pika ==== GCF_003668045 ---- B D Bushbaby ==== B D Tenrec ==== B D Squirrel ---- B D Tree shrew ==== B D Zebrafish ==== B D X. tropicalis ==== B D Chicken ==== B D Lamprey ==== Alignment block 38 of 438 in window, 37097116 - 37097145, 30 bps B D Mouse acc----------ttggtgtaa----aatactc-----ctttgc-aaata B D Rat acc----------ctgtcttaa----agtactc-----ctttgt-aaata B D Squirrel -----------------cttaa----aatatgc-----cttta--aaagc B D Guinea pig acct--------tttattccaa----aaaatttaaaaacttaaa-aagta B D Rabbit acc----------ttttcatga----aatgtgt----attttat-atata B D Human atc----------ttttcaaaa----aatactc-----cctttt-aaagt B D Chimp atc----------ttttcaaaa----aatactc-----cctttt-aaagc B D Bonobo atc----------ttttcaaaa----aatactc-----cctttt-aaagc B D Gorilla atc----------ttttcaaaa----aatactc-----cctttt-aaagc B D Rhesus acc----------tttttaaaa----aatactc-----cctttt-aaagc B D Marmoset act----------taaaaaaaa----aaaactc-----cctttt-aaagc B D Tarsier gcc----------ttttcttaa----aataatc-----cttttt-aaagc B D Malayan flying lemur at-----------------------------tc-----cttttt-aaagc B D Pig act----------gtttaaaaaaaataataatc-----ctttta-aaagc B D Dolphin act----------ttttaaaaa----attaatc-----cttttt-aaa-- B D Cow act----------tcttacaaa----aataatc-----cttttt-aaagc B D Sheep act----------tcttacaaa----aataatc-----ctttttaaaagc B D Horse -------------tttccttaa----aatactc-----cttttt-aaagc B D Chinese pangolin -----------------------------acca-----tggtat-taata B D Dog act----------ctttctcaa----gatattc-----cttttt-aaaga B D Hawaiian monk seal act----------ttttcttaa----aatactc-----cttttt-gagga B D Elephant ---acttttttttttttttttt----aatatgc-------tttt-aaagc B D Opossum ================================================== Beaver ================================================== B D Shrew ================================================== B D Hedgehog ================================================== B D Pika ================================================== GCF_003668045 -------------------------------------------------- B D Bushbaby ================================================== B D Tenrec ================================================== B D Tree shrew ================================================== B D Zebrafish ================================================== B D X. tropicalis ================================================== B D Chicken ================================================== B D Lamprey ================================================== Inserts between block 38 and 39 in window B D Rabbit 615bp Alignment block 39 of 438 in window, 37097146 - 37097197, 52 bps B D Mouse atc--accatagcta------------ctgtggggagaacag--acatgtaggccta-ata----gggat B D Rat atc--accatggcta------------ctgtggggagaacag--accattcaggcgg-tta----ggaat B D Squirrel atc--attctggcca-------------tgtgtggag-----------------cag-tta----agagt B D Guinea pig agaagactatggcaatagttagtgttgctgtagtgacagta-------------tgg-tta----ataat B D Human -tc--actctggcta------------ctgtgtgaagaacag--ac--tataggcag-tta----agaat B D Chimp -tc--actctggcta------------ctgtgtgaagaacag--ac--tataggcag-tta----agaat B D Bonobo -tc--actctggcta------------ctgtgtgaagaacag--ac--tataggcag-tta----agaat B D Gorilla -tc--actctggcta------------ctgtgtgaagaatag--ac--tataggcag-tta----agaat B D Rhesus -tc--actctggcta------------ctgtgtgaagaacag--ac--tataggcag-tta----agaat B D Marmoset -tc--attctggcta------------ctatgtgaagaacag--ac--tataagtag-tta----agaat B D Tarsier atc--actctggtta------------cagtgtggagaacag--ac--tataagcag-tta----agaat B D Malayan flying lemur atc--actttggtta------------ctgtctagagaactg--attatatagtcag-tta----agaat B D Pig atc--accctggtta------------ctgtgtggagagcagtaac--ca-aggtggttta----ggaat B D Dolphin -----------gctg------------ctgtgtggggaacag--ac--ca-aggtgg-tta----agaat B D Cow atc--actctggctt------------ctgtgtggggaacag--ac--tg-aggtgg-tta--------- B D Sheep atc--tctctggctt------------ctgtgtagggaacag--ac--tg-aggtag-tta----ggaat B D Horse atc--actctggctg------------ctgtgtggagaacag--ac--tacaggtgg-tta----agcat B D Chinese pangolin acc--attattacta------------ttgtaa------------------------------------- B D Dog atc--actctggttg------------ctctgtgcagaaaag--ac--tacaggtgg-tta----agagt B D Hawaiian monk seal atc--actctggctg------------ctgtatgaaaaatag--ac--tacaggtgg-tga----agagt B D Elephant atc--gctgtggtcg------------ttgtgtggagaacag--ac--agtaagggg-taacactggaat B D Opossum ====================================================================== Beaver ====================================================================== B D Shrew ====================================================================== B D Hedgehog ====================================================================== B D Pika ====================================================================== GCF_003668045 ---------------------------------------------------------------------- B D Rabbit ====================================================================== B D Bushbaby ====================================================================== B D Tenrec ====================================================================== B D Tree shrew ====================================================================== B D Zebrafish ====================================================================== B D X. tropicalis ====================================================================== B D Chicken ====================================================================== B D Lamprey ====================================================================== Mouse gga Rat gga Squirrel ggc Guinea pig ata Human gga Chimp gga Bonobo gga Gorilla gga Rhesus gga Marmoset gga Tarsier gga Malayan flying lemur gaa Pig gaa Dolphin gaa Cow --- Sheep gaa Horse gga Chinese pangolin --- Dog gga Hawaiian monk seal gga Elephant gga Opossum === Beaver === Shrew === Hedgehog === Pika === GCF_003668045 --- Rabbit === Bushbaby === Tenrec === Tree shrew === Zebrafish === X. tropicalis === Chicken === Lamprey === Inserts between block 39 and 40 in window B D Human 186bp B D Chimp 186bp B D Bonobo 186bp B D Gorilla 186bp B D Rhesus 81bp B D Marmoset 81bp B D Tarsier 26bp B D Pig 185bp B D Chinese pangolin 31bp Alignment block 40 of 438 in window, 37097198 - 37097206, 9 bps B D Mouse cacagggag B D Rat cacagggag B D Squirrel agtaaggag B D Guinea pig aggaggggg B D Rhesus --caggcaa B D Marmoset --cagacaa B D Tarsier --catttta B D Malayan flying lemur ---agtgag B D Dolphin agtaaggaa B D Sheep agtaaggaa B D Horse attaaggag B D Dog aatagaaat B D Hawaiian monk seal agtagagac B D Elephant ctcagctat B D Gorilla ========= B D Bonobo ========= B D Chimp ========= B D Human ========= B D Opossum ========= B D Pig ========= B D Chinese pangolin ========= Beaver ========= B D Shrew ========= B D Cow --------- B D Hedgehog ========= B D Pika ========= GCF_003668045 --------- B D Rabbit ========= B D Bushbaby ========= B D Tenrec ========= B D Tree shrew ========= B D Zebrafish ========= B D X. tropicalis ========= B D Chicken ========= B D Lamprey ========= Inserts between block 40 and 41 in window B D Dolphin 176bp B D Sheep 205bp B D Horse 84bp B D Dog 34bp B D Hawaiian monk seal 78bp Alignment block 41 of 438 in window, 37097207 - 37097208, 2 bps B D Mouse ga B D Rat ga B D Squirrel ag B D Guinea pig gt B D Rhesus ga B D Marmoset ga B D Tarsier ca B D Malayan flying lemur ga B D Horse ga B D Chinese pangolin ga B D Hawaiian monk seal ga B D Elephant ga B D Dog == B D Sheep == B D Gorilla == B D Bonobo == B D Chimp == B D Human == B D Opossum == B D Pig == Beaver == B D Shrew == B D Cow -- B D Dolphin == B D Hedgehog == B D Pika == GCF_003668045 -- B D Rabbit == B D Bushbaby == B D Tenrec == B D Tree shrew == B D Zebrafish == B D X. tropicalis == B D Chicken == B D Lamprey == Inserts between block 41 and 42 in window B D Rat 30bp B D Squirrel 80bp B D Guinea pig 22bp B D Rhesus 2bp B D Marmoset 2bp B D Tarsier 14bp B D Malayan flying lemur 166bp B D Elephant 197bp Alignment block 42 of 438 in window, 37097209 - 37097272, 64 bps B D Mouse tggtac------ctttaactaggatgacagtggt------aaatgtgatcagt-------agt-aagcag B D Rat tggtac------ctttaaccaggatgacagtggc------aaatgtgatcagt-------agt-cagcag B D Squirrel tggtga------ctttaactgggctaacagtggt------aaaaggggtgagt-------aat-agtcaa B D Guinea pig taatga------tgtcaattaggctga---tggt------aaaagcaatgagt-------agtaaatcaa B D Rhesus tgatgg------ctttcactaggatgacagaggt------gtaagtggtgaga-------agc-agtcag B D Marmoset tggtgg------ctttcactaggatgatagaggt------gtaagtagtgaga-------agc-agtcag B D Tarsier ttgtaggaggcccttacactgggttgatagaggt------aaaagtggtgaaa-------agt-agtcag B D Cow ----------------------------agaaa-------gaaagtaaggaaatcactgtagt-aatcac B D Horse cggtgg------ctttaactagaatgacagaagt------aaaagtagtaaga-------agt-agtcag B D Chinese pangolin tggtgg------ctttaactagagtaacagaggt------aaaagtggtcaaa-------agt-agtcag B D Dog --acag------ttatagtaag-------gaggccttcagaagagtcctgaca-------g-------ca B D Hawaiian monk seal tggcag------ctttaaccagag----agaggt------aaaagtggtgaaa-------agt-agtcag B D Sheep ====================================================================== B D Gorilla ====================================================================== B D Bonobo ====================================================================== B D Chimp ====================================================================== B D Human ====================================================================== B D Opossum ====================================================================== B D Pig ====================================================================== Beaver ====================================================================== B D Shrew ====================================================================== B D Elephant ====================================================================== B D Dolphin ====================================================================== B D Hedgehog ====================================================================== B D Pika ====================================================================== GCF_003668045 ---------------------------------------------------------------------- B D Rabbit ====================================================================== B D Bushbaby ====================================================================== B D Tenrec ====================================================================== B D Tree shrew ====================================================================== B D Zebrafish ====================================================================== B D Malayan flying lemur ====================================================================== B D X. tropicalis ====================================================================== B D Chicken ====================================================================== B D Lamprey ====================================================================== Mouse aatgaagacaactt Rat gaggacgacagctc Squirrel aat-aggatagctt Guinea pig aatgatgataactt Rhesus aatgaggatagctt Marmoset aatgaggatagctt Tarsier aatgagtataacct Cow tattaatacaa--- Horse aatcaggataattt Chinese pangolin aatcaggataattt Dog aatgatgacagctt Hawaiian monk seal aatcgggatcattt Sheep ============== Gorilla ============== Bonobo ============== Chimp ============== Human ============== Opossum ============== Pig ============== Beaver ============== Shrew ============== Elephant ============== Dolphin ============== Hedgehog ============== Pika ============== GCF_003668045 -------------- Rabbit ============== Bushbaby ============== Tenrec ============== Tree shrew ============== Zebrafish ============== Malayan flying lemur ============== X. tropicalis ============== Chicken ============== Lamprey ============== Inserts between block 42 and 43 in window B D Dog 84bp Alignment block 43 of 438 in window, 37097273 - 37097298, 26 bps B D Mouse ggtaactcgtagttgataac--t--cttta B D Rat agcggctctcggttgattgg--ttgcttcg B D Squirrel -----------tttaataac--t--tttta B D Guinea pig -----------tttaatagc--t--tttta B D Rhesus -----------tttaataac--t--tta-- B D Marmoset -----------tttaataac--t--cta-- B D Tarsier -----------tttagtaacttt--tta-- B D Cow ----------------taac--tgctatta B D Horse ------------ttagtaac--t--tttta B D Chinese pangolin ------------ttagtgac--t--tttta B D Hawaiian monk seal ------------taaataac--t--cttta B D Dog ============================== B D Sheep ============================== B D Gorilla ============================== B D Bonobo ============================== B D Chimp ============================== B D Human ============================== B D Opossum ============================== B D Pig ============================== Beaver ============================== B D Shrew ============================== B D Elephant ============================== B D Dolphin ============================== B D Hedgehog ============================== B D Pika ============================== GCF_003668045 ------------------------------ B D Rabbit ============================== B D Bushbaby ============================== B D Tenrec ============================== B D Tree shrew ============================== B D Zebrafish ============================== B D Malayan flying lemur ============================== B D X. tropicalis ============================== B D Chicken ============================== B D Lamprey ============================== Inserts between block 43 and 44 in window B D Guinea pig 16bp B D Cow 9bp B D Horse 96bp Alignment block 44 of 438 in window, 37097299 - 37097300, 2 bps B D Mouse ct B D Rat tt B D Squirrel tc B D Dog == B D Rhesus -- B D Guinea pig == B D Sheep == B D Horse == B D Hawaiian monk seal -- B D Gorilla == B D Bonobo == B D Chimp == B D Human == B D Marmoset -- B D Opossum == B D Pig == B D Chinese pangolin -- Beaver == B D Shrew == B D Cow == B D Elephant == B D Dolphin == B D Hedgehog == B D Pika == B D Tarsier -- GCF_003668045 -- B D Rabbit == B D Bushbaby == B D Tenrec == B D Tree shrew == B D Zebrafish == B D Malayan flying lemur == B D X. tropicalis == B D Chicken == B D Lamprey == Alignment block 45 of 438 in window, 37097301 - 37097309, 9 bps B D Mouse --tgtggtt--tt B D Rat --tatggttggtt B D Cow tatactttt---- B D Dog ============= B D Rhesus ------------- B D Guinea pig ============= B D Sheep ============= B D Horse ============= B D Hawaiian monk seal ------------- B D Gorilla ============= B D Bonobo ============= B D Chimp ============= B D Human ============= B D Marmoset ------------- B D Opossum ============= B D Pig ============= B D Chinese pangolin ------------- Beaver ============= B D Shrew ============= B D Elephant ============= B D Dolphin ============= B D Hedgehog ============= B D Pika ============= B D Tarsier ------------- GCF_003668045 ------------- B D Rabbit ============= B D Bushbaby ============= B D Tenrec ============= B D Squirrel ------------- B D Tree shrew ============= B D Zebrafish ============= B D Malayan flying lemur ============= B D X. tropicalis ============= B D Chicken ============= B D Lamprey ============= Inserts between block 45 and 46 in window B D Cow 146bp Alignment block 46 of 438 in window, 37097310 - 37097429, 120 bps B D Mouse gg--ggttttctaggtacagggtttctctacatagccc-aagctgtcctggaactagctatatagactag B D Rat ggttggtttgaca---acggggcttctctacatggccctaagctgtcctggaactaattatgtagaccag B D Squirrel ----------------acag-------------------aagt-------------attacatgagc--- B D Rhesus ------------------------------------------------------ttattacagaag---- B D Marmoset ------------------------------------------------------ttatcacagaag---- B D Tarsier ------------------------------------------------------ttatcaaaaaag---- B D Chinese pangolin ------------------------------------------------------taatcgcagaagtact B D Hawaiian monk seal ------------------------------------------------------taatcacagaagcagt B D Dog ====================================================================== B D Guinea pig ====================================================================== B D Sheep ====================================================================== B D Horse ====================================================================== B D Gorilla ====================================================================== B D Bonobo ====================================================================== B D Chimp ====================================================================== B D Human ====================================================================== B D Opossum ====================================================================== B D Pig ====================================================================== Beaver ====================================================================== B D Shrew ====================================================================== B D Cow ====================================================================== B D Elephant ====================================================================== B D Dolphin ====================================================================== B D Hedgehog ====================================================================== B D Pika ====================================================================== GCF_003668045 ---------------------------------------------------------------------- B D Rabbit ====================================================================== B D Bushbaby ====================================================================== B D Tenrec ====================================================================== B D Tree shrew ====================================================================== B D Zebrafish ====================================================================== B D Malayan flying lemur ====================================================================== B D X. tropicalis ====================================================================== B D Chicken ====================================================================== B D Lamprey ====================================================================== Mouse gctgacctcctaagtgctgggattgaaggtgtgcaccgctacacctgagctgt Rat gctgacctcctaagtactgggattga-ggcgtgcaccactgtgcctgagctaa Squirrel ---------------------attgaaaaaataaacc---------------- Rhesus ----------------------------------------------------- Marmoset ----------------------------------------------------- Tarsier ----------------------------------------------------- Chinese pangolin g---------------------------------------------------- Hawaiian monk seal aca-------------------------------------------------- Dog ===================================================== Guinea pig ===================================================== Sheep ===================================================== Horse ===================================================== Gorilla ===================================================== Bonobo ===================================================== Chimp ===================================================== Human ===================================================== Opossum ===================================================== Pig ===================================================== Beaver ===================================================== Shrew ===================================================== Cow ===================================================== Elephant ===================================================== Dolphin ===================================================== Hedgehog ===================================================== Pika ===================================================== GCF_003668045 ----------------------------------------------------- Rabbit ===================================================== Bushbaby ===================================================== Tenrec ===================================================== Tree shrew ===================================================== Zebrafish ===================================================== Malayan flying lemur ===================================================== X. tropicalis ===================================================== Chicken ===================================================== Lamprey ===================================================== Alignment block 47 of 438 in window, 37097430 - 37097433, 4 bps B D Mouse ctcc B D Rat gttc B D Malayan flying lemur cttt B D Dog ==== B D Rhesus ---- B D Guinea pig ==== B D Sheep ==== B D Horse ==== B D Hawaiian monk seal ---- B D Gorilla ==== B D Bonobo ==== B D Chimp ==== B D Human ==== B D Marmoset ---- B D Opossum ==== B D Pig ==== B D Chinese pangolin ---- Beaver ==== B D Shrew ==== B D Cow ==== B D Elephant ==== B D Dolphin ==== B D Hedgehog ==== B D Pika ==== B D Tarsier ---- GCF_003668045 ---- B D Rabbit ==== B D Bushbaby ==== B D Tenrec ==== B D Squirrel ---- B D Tree shrew ==== B D Zebrafish ==== B D X. tropicalis ==== B D Chicken ==== B D Lamprey ==== Alignment block 48 of 438 in window, 37097434 - 37097436, 3 bps B D Mouse tta- B D Rat tta- B D Rhesus -ta- B D Marmoset -ta- B D Tarsier -ca- B D Malayan flying lemur tta- B D Cow -gaa B D Dog ==== B D Guinea pig ==== B D Sheep ==== B D Horse ==== B D Hawaiian monk seal ---- B D Gorilla ==== B D Bonobo ==== B D Chimp ==== B D Human ==== B D Opossum ==== B D Pig ==== B D Chinese pangolin ---- Beaver ==== B D Shrew ==== B D Elephant ==== B D Dolphin ==== B D Hedgehog ==== B D Pika ==== GCF_003668045 ---- B D Rabbit ==== B D Bushbaby ==== B D Tenrec ==== B D Squirrel ---- B D Tree shrew ==== B D Zebrafish ==== B D X. tropicalis ==== B D Chicken ==== B D Lamprey ==== Alignment block 49 of 438 in window, 37097437 - 37097438, 2 bps B D Mouse at B D Rat at B D Rhesus at B D Marmoset at B D Tarsier at B D Malayan flying lemur at B D Cow ac B D Sheep ac B D Dog == B D Guinea pig == B D Horse == B D Hawaiian monk seal -- B D Gorilla == B D Bonobo == B D Chimp == B D Human == B D Opossum == B D Pig == B D Chinese pangolin -- Beaver == B D Shrew == B D Elephant == B D Dolphin == B D Hedgehog == B D Pika == GCF_003668045 -- B D Rabbit == B D Bushbaby == B D Tenrec == B D Squirrel -- B D Tree shrew == B D Zebrafish == B D X. tropicalis == B D Chicken == B D Lamprey == Inserts between block 49 and 50 in window B D Rhesus 1bp B D Marmoset 3bp B D Tarsier 3bp B D Malayan flying lemur 15bp Alignment block 50 of 438 in window, 37097439 - 37097439, 1 bps B D Mouse -t B D Rat -t B D Human -c B D Chimp -c B D Bonobo -c B D Gorilla -t B D Rhesus -t B D Malayan flying lemur -c B D Cow a- B D Sheep a- B D Dog == B D Guinea pig == B D Horse == B D Hawaiian monk seal -- B D Marmoset == B D Opossum == B D Pig == B D Chinese pangolin -- Beaver == B D Shrew == B D Elephant == B D Dolphin == B D Hedgehog == B D Pika == B D Tarsier == GCF_003668045 -- B D Rabbit == B D Bushbaby == B D Tenrec == B D Squirrel -- B D Tree shrew == B D Zebrafish == B D X. tropicalis == B D Chicken == B D Lamprey == Alignment block 51 of 438 in window, 37097440 - 37097440, 1 bps B D Mouse g B D Rat a B D Human g B D Chimp g B D Bonobo g B D Gorilla g B D Rhesus g B D Malayan flying lemur a B D Pig g B D Dolphin a B D Cow g B D Sheep a B D Dog = B D Guinea pig = B D Horse = B D Hawaiian monk seal - B D Marmoset = B D Opossum = B D Chinese pangolin - Beaver = B D Shrew = B D Elephant = B D Hedgehog = B D Pika = B D Tarsier = GCF_003668045 - B D Rabbit = B D Bushbaby = B D Tenrec = B D Squirrel - B D Tree shrew = B D Zebrafish = B D X. tropicalis = B D Chicken = B D Lamprey = Inserts between block 51 and 52 in window B D Rat 23bp Alignment block 52 of 438 in window, 37097441 - 37097581, 141 bps B D Mouse tgtacatt--gaaagcaag---ctag---aaaatgt-----aaac--a--aaagtga--agg--gtc-at B D Rat tacacatt--aaaagcaag---ctag---aaaatgt-----aaac--a--aaagtga--agg--gtc-at B D Squirrel taaaaact--acaatcaa-----------aaaatga-----aaac--a-----------------tt-gc B D Guinea pig tgtgcgttgaaaaaagaaa---cctt---taattat-----aagc--a--agagaga--aaa--aca-tc B D Human tatacatt--gaaaa-aaa---ctag---aaaacacaagagaagc--a--aaaaata--aaaccatc-ac B D Chimp tatacatt--gaaaa-aaa---ctag---aaaacac--gagaagc-aa--aaaaata--aaaccatc-ac B D Bonobo tatacatt--gaaaa-aaa---ctag---aaaacacaagagaagc-aa--aaaaata--aaaccatc-ac B D Gorilla tatacatt--gaaaa-aaa---ctag---aaaacacaagagaagc--a--aaaaata--aaaccatc-ac B D Rhesus tgtacatt--gaaaagaaa---ctag---aatacacaagagaagc--a--aaaaata--aaacaatc-at B D Marmoset tgtacatt--gaaaa-aaa---aaac---aaaacacaatagaagc--a--aaaaat-------tatc-ac B D Tarsier tgtacatt--gaaaa-aaa---ctag---aaaatac-atacaagc--aacaaaaata--aaaccatt-ac B D Malayan flying lemur tgtacatt--gaaaa-aaa----tag---aaaatac-attcaaac--a--taaaata--taaacgtc-at B D Pig tgtggatt--gggaa-a------aaaattagaaaac-atacaagcaaa--aaaaaaa--aaaaaatc-ac B D Dolphin tgtgcatt--gggaa-aacaaatgag---aaaacat-atacaagc--a--aaaaaaa--aaaaaatc-ac B D Cow tgtgcatt--gggaa-a------gaa---tgtacgt-atccaagc--a--aaaaata--aaaacctcaac B D Sheep tgtgcatt--aggaa-a------gaa---tgtacat-atccaagc--a--aaaaata--aaaacctc-ac B D Chinese pangolin --tgcata--aaaaa-aacccactag---aaaatgc-atgcaagc--a--aaaaata---aaacagc-ac B D Dog tgtgcatt--ggaaa-agc---ctgg---aaaacac-atacaagc--a--aaaaata--gaaacatc-ac B D Hawaiian monk seal tatgcatt--ggaaa-agc---ctag---aaagtac-atataagc-----aaaaaca--gaaacatc-ac B D Elephant taagcatt--gaaga-aaa---ctag---aaaatac-atgtaacc--a--aaacaaaacaaaaaatc-ac B D Horse ====================================================================== B D Opossum ====================================================================== Beaver ====================================================================== B D Shrew ====================================================================== B D Hedgehog ====================================================================== B D Pika ====================================================================== GCF_003668045 ---------------------------------------------------------------------- B D Rabbit ====================================================================== B D Bushbaby ====================================================================== B D Tenrec ====================================================================== B D Tree shrew ====================================================================== B D Zebrafish ====================================================================== B D X. tropicalis ====================================================================== B D Chicken ====================================================================== B D Lamprey ====================================================================== Mouse attcctg--cctcaga----atcatcactgt----------gaa------gcagct----tagagcttaa Rat attcctg--cctcaga----atca-cactgt----------gaa------gcagct----cagagcttaa Squirrel attccac--acacaaa----ttga-ctctgt----------gaa-------caatt----tagagcacac Guinea pig attct----atgaaaa----atta---ctgt----------aaatatctggattct----tagagcatat Human attcc----actcagaa---atca---ctgt----------gaa-------cacct----tagagcatac Chimp attcc----actcagaa---atca---ctgt----------gaa-------cacct----tagagcatac Bonobo attcc----actcagaa---atca---ctgt----------gaa-------cacct----tagagcatac Gorilla attcc----actcagaa---atca---ctgt----------gaa-------cacct----tagagcatac Rhesus gttcc----actctgac---atca---ctgt----------gaa-------cacct----tagag----- Marmoset attcc----actcagaa---atca---ctgt----------aaa-------cacct----taaagcatat Tarsier tttcc----acttagat---atca---cagtgaacatcttagaa-------catct----tagagcatat Malayan flying lemur attcc----acccagaaaacatta---ctgt----------gaa-------cacct----tagaacatat Pig attct----acccagaa---attat---ttt----------gaa-------cactt----tagagca-at Dolphin attct----acccagaa---atcatcactgt----------caa-------cactt---------tatat Cow attct----gcccagaa---atcatcactgc----------gat-------tactttatatagagtatat Sheep atttt----tcccagaa---atcatcactgt----------gat-------tactttatatacagtatat Chinese pangolin attac----acccaaaa---atcatgactgc----------aaa-------cacca----cagaacatgt Dog attcc----tcccagaa---atcatca--ct----------gaa-------caatt----tagactatat Hawaiian monk seal attcc----acccagaa---atcatcactct----------gaa-------caatt----tagagtatgt Elephant attccacctacctagaa---ttcatcactgt----------taa-------tatct----tagagtatat Horse ====================================================================== Opossum ====================================================================== Beaver ====================================================================== Shrew ====================================================================== Hedgehog ====================================================================== Pika ====================================================================== GCF_003668045 ---------------------------------------------------------------------- Rabbit ====================================================================== Bushbaby ====================================================================== Tenrec ====================================================================== Tree shrew ====================================================================== Zebrafish ====================================================================== X. tropicalis ====================================================================== Chicken ====================================================================== Lamprey ====================================================================== Mouse acat--gaacagattcctata--tattctctaca----tatttgtacacttgtttgt Rat acat-----------tctatc--tgttctctaca----tatttgtacacttgtttgt Squirrel actt--ggatattttactgtg--ca---tctatg----tacctatgtatacgtttta Guinea pig gctttaagatatttttctatg--ta---tctgta----tacctatgtacactttata Human acctccagatatttttctgtg--ta---tctgta----tatatgcgtacatttt--- Chimp acctccagatatttttctgtg--ta---tctgta----tatatgcatacatttt--- Bonobo acctccagatatttttctgtg--ta---tctgta----tatatgcatacatttt--- Gorilla acctccagatatttttctgtg--ta---tctgta----tatatgcgtacatttt--- Rhesus -------gtattttttctatg--ta---tctcta----tatatgtgtacatttt--- Marmoset acttccagatatttttctatg--ta---tctgta----tatatgtgtatatttt--- Tarsier acttccagatatttacttatg--ca---tctgta----tatatgcatacttttt--- Malayan flying lemur acatccaggtatttttctatgcctc---tctata----tatgtgtgtacttttt--- Pig tctttcagatacttttctatg--ta---tatata----tgtgtgt------------ Dolphin actttcagatact-ttctatg--cg---tgtgtg----tgtgtgt------------ Cow actctcagatacttttctagg--ca---tgcatg----catgtgc------------ Sheep atgctcagatactgttctagg--ca---tgcacg----catgtgc------------ Chinese pangolin actttcaggtacttttctatg--ca---cctatatacttttatgt------------ Dog actttcagataattttctata--aa---cctataaaa-cctgtgt------------ Hawaiian monk seal actttcagatgattttctata--aa---cctatataa-cacatgt------------ Elephant ctttccaaatacttttctgta--ca---tcaata----tacatgtgtat-------- Horse ========================================================= Opossum ========================================================= Beaver ========================================================= Shrew ========================================================= Hedgehog ========================================================= Pika ========================================================= GCF_003668045 --------------------------------------------------------- Rabbit ========================================================= Bushbaby ========================================================= Tenrec ========================================================= Tree shrew ========================================================= Zebrafish ========================================================= X. tropicalis ========================================================= Chicken ========================================================= Lamprey ========================================================= Inserts between block 52 and 53 in window B D Dolphin 40bp B D Cow 42bp B D Sheep 53bp B D Chinese pangolin 19bp B D Dog 19bp B D Hawaiian monk seal 22bp Alignment block 53 of 438 in window, 37097582 - 37097608, 27 bps B D Mouse tt----------------tactttgctttg----tttttccagtcag B D Rat ttgtttgtttgtttgttttactttgctttg----ttttcctagtcgg B D Squirrel ca----------------aaaatgtctttg----ttttatta----- B D Guinea pig tc----------------gaggtatcat------ttacactgttcag B D Pig -------------------------------aatttttaccaaa--- B D Cow ----------------ttcatattgttttttaaccttttccagtcaa B D Sheep ----------------ttcatattgttttgtaaccttttccagtcaa B D Horse ----------------ttcatattgttttgtaaccttttccagtcaa B D Chinese pangolin ----------------ttcatactgtcttgtaacc-ttcccagtcaa B D Dog ----------------ttcatactgttttgtaactttttctggtgaa B D Hawaiian monk seal ----------------ttcatactgttttgtaaccttttctagtgaa B D Elephant ----------------------------------actttctggcaaa B D Rhesus ----------------------------------------------- B D Gorilla ----------------------------------------------- B D Bonobo ----------------------------------------------- B D Chimp ----------------------------------------------- B D Human ----------------------------------------------- B D Marmoset ----------------------------------------------- B D Opossum =============================================== Beaver =============================================== B D Shrew =============================================== B D Dolphin =============================================== B D Hedgehog =============================================== B D Pika =============================================== B D Tarsier ----------------------------------------------- GCF_003668045 ----------------------------------------------- B D Rabbit =============================================== B D Bushbaby =============================================== B D Tenrec =============================================== B D Tree shrew =============================================== B D Zebrafish =============================================== B D Malayan flying lemur ----------------------------------------------- B D X. tropicalis =============================================== B D Chicken =============================================== B D Lamprey =============================================== Inserts between block 53 and 54 in window B D Cow 2bp B D Sheep 91bp Alignment block 54 of 438 in window, 37097609 - 37097631, 23 bps B D Mouse ggattctctgtgtagccctggcc-- B D Rat ggtttctctgtgcagccctggcc-- B D Squirrel ---------------ccctttcc-- B D Guinea pig ------tctatggagacattttc-- B D Pig atattattcatattgttttggaa-- B D Cow at----------------------- B D Elephant atatcattcctatcgttttgtaacc B D Dog ------------------------- B D Rhesus ------------------------- B D Sheep ========================= B D Horse ------------------------- B D Hawaiian monk seal ------------------------- B D Gorilla ------------------------- B D Bonobo ------------------------- B D Chimp ------------------------- B D Human ------------------------- B D Marmoset ------------------------- B D Opossum ========================= B D Chinese pangolin ------------------------- Beaver ========================= B D Shrew ========================= B D Dolphin ========================= B D Hedgehog ========================= B D Pika ========================= B D Tarsier ------------------------- GCF_003668045 ------------------------- B D Rabbit ========================= B D Bushbaby ========================= B D Tenrec ========================= B D Tree shrew ========================= B D Zebrafish ========================= B D Malayan flying lemur ------------------------- B D X. tropicalis ========================= B D Chicken ========================= B D Lamprey ========================= Inserts between block 54 and 55 in window B D Pig 2bp Alignment block 55 of 438 in window, 37097632 - 37097653, 22 bps B D Mouse tta---------------accaaa--------------------------------------gtatcact B D Rat ttcctggaatgttgttttatcaaa--------------------------------------gtatcacc B D Squirrel taa---------------ttaaca--------------------------------------gt------ B D Guinea pig tag---------------tcaact--------------------------------------atc----- B D Human ------------------aagaaa--------------------------------------atatcaaa B D Chimp ------------------aagaaa--------------------------------------atatcaaa B D Bonobo ------------------aagaaa--------------------------------------atatcaaa B D Gorilla ------------------aagaaa--------------------------------------atatcaaa B D Rhesus ------------------aagaaa--------------------------------------atatcaaa B D Marmoset ------------------atgaaa--------------------------------------atatccaa B D Tarsier ------------------gtcaaataccattcacactgttttgtcacctttctctagtcaacatctccaa B D Malayan flying lemur ------------------accaaa--------------------------------------aaatc--- B D Dolphin ---------------------------------------------------------------------- B D Elephant ---------tttttctagctgaca--------------------------------------gtatcc-- B D Dog ---------------------------------------------------------------------- B D Sheep ====================================================================== B D Horse ---------------------------------------------------------------------- B D Hawaiian monk seal ---------------------------------------------------------------------- B D Opossum ====================================================================== B D Pig ====================================================================== B D Chinese pangolin ---------------------------------------------------------------------- Beaver ====================================================================== B D Shrew ====================================================================== B D Cow ---------------------------------------------------------------------- B D Hedgehog ====================================================================== B D Pika ====================================================================== GCF_003668045 ---------------------------------------------------------------------- B D Rabbit ====================================================================== B D Bushbaby ====================================================================== B D Tenrec ====================================================================== B D Tree shrew ====================================================================== B D Zebrafish ====================================================================== B D X. tropicalis ====================================================================== B D Chicken ====================================================================== B D Lamprey ====================================================================== Mouse atccc Rat aaccg Squirrel ----- Guinea pig ----- Human attca Chimp attca Bonobo attca Gorilla attca Rhesus attca Marmoset actca Tarsier ---ca Malayan flying lemur attca Dolphin -ttta Elephant ----- Dog ----- Sheep ===== Horse ----- Hawaiian monk seal ----- Opossum ===== Pig ===== Chinese pangolin ----- Beaver ===== Shrew ===== Cow ----- Hedgehog ===== Pika ===== GCF_003668045 ----- Rabbit ===== Bushbaby ===== Tenrec ===== Tree shrew ===== Zebrafish ===== X. tropicalis ===== Chicken ===== Lamprey ===== Inserts between block 55 and 56 in window B D Human 13bp B D Chimp 13bp B D Bonobo 13bp B D Gorilla 13bp B D Rhesus 13bp B D Marmoset 13bp B D Tarsier 13bp B D Malayan flying lemur 21bp B D Dolphin 18bp Alignment block 56 of 438 in window, 37097654 - 37097732, 79 bps B D Mouse tttt---t-----------------------tacactcaaactttctactttgccag----ttac----c B D Rat gttt---t-----------------------tacactccagcgtcctactgtgccag----ttct----t Beaver ttct---c-----------------------tggccttcaaatctctattacttcag----atct----c B D Squirrel -----------------------------------ctccaactttctattttgctaa----ttat----g B D Guinea pig ------------------------------------tccaagtttccatttggctgt----gtgt----c B D Human gtca---a-----------------------caatctccaactttccattttgctaa----ttat----c B D Chimp gtca---a-----------------------caatctccaactttccattttgctaa----ttat----c B D Bonobo gtca---a-----------------------caatctccaactttccattttgctaa----ttat----c B D Gorilla gtca---a-----------------------caatctccaactttccattttgctaa----ttat----c B D Rhesus gtca---a-----------------------caatctccaactttccattttgctaa----ttat----c B D Marmoset gtc------------------------------atcttcaactttgcattttgctaattacttat----c B D Tarsier attatgta-----------------------aatcctttagctt-------------------------- B D Malayan flying lemur ctta---a-----------------------cagtgtccaactttccattttgctaattatttat----c B D Pig -------------------tttcccagtcaacaacctccaactttctattttgctga----ttat----c B D Dolphin -------tgttttgtagccttttccagtcaacagtctcaaactttccattgtgctaa----ttat----c B D Cow -----------------------------------ctcgaactttacattacattaa----ttat----c B D Horse -------------------------------caatctccaacttcccattttgctaa----ttatttatc B D Chinese pangolin -------------------------------caatatccaacattccattttgctaa----ttatgta-c B D Dog -------------------------------cagtatt--gttttccactttgcaaa----gtatatatc B D Hawaiian monk seal -------------------------------cagtatccagttttccattttgctaa----gtatttatc B D Elephant ---------------------------------------aactttctattttgttaa----ttatttatc B D Sheep ====================================================================== B D Opossum ====================================================================== B D Shrew ====================================================================== B D Hedgehog ====================================================================== B D Pika ====================================================================== GCF_003668045 ---------------------------------------------------------------------- B D Rabbit ====================================================================== B D Bushbaby ====================================================================== B D Tenrec ====================================================================== B D Tree shrew ====================================================================== B D Zebrafish ====================================================================== B D X. tropicalis ====================================================================== B D Chicken ====================================================================== B D Lamprey ====================================================================== Mouse tgtctctgtcttccaggaac-----aaacttaatgactga-cccacaa---------------------- Rat tatctctgccttccaggcactattccaactccatgaccga-cccacaa---------------------- Beaver tattactgccctaaaaatat-------cctttacaattgg-tttc------------------------- Squirrel ta----tgtcctat-ggcacattcaagtttctgtgactga-cctgaaaaaaaaaaaaatccttttacagg Guinea pig tcctctgactttaaaagtacattcagatttccatgactga-cctaaaa--------ataacatttacaac Human tcctttagctttcaaaacacattcaaatttccatgattga-tctaaaa--------atgtcctctataat Chimp tcctttagctttcaaaacacattcaaatttccatgattga-tctaaaa--------atgtcctctataat Bonobo tcctttagctttcaaaacacattcaaatttccatgattga-tctaaaa--------atgtcctctataat Gorilla tcctttagctttcaaaacacattcaaatttccatgattga-tct-aaa--------atgtcctctataat Rhesus tcctttagctttcaaaacacatt--gatttccatgattga-tctaaaa--------atgtcctctataat Marmoset tcctttagctttcaaaacacattcagatttctatgattga-tctaaaa--------atgtcctgtataat Tarsier -----------tcaaagcacattcaaatttctccagttga-cctaaaa--------ataccctttataat Malayan flying lemur tcctctagctttcaaagcatattcaaatttccataattga-ttttaaa--------atatgattttaaac Pig tcctctgtccttctcaccaaagt-------ccacagctga-tttaaaa--------t------------- Dolphin tcctctagtcacctcagcacagt-------ccacaactga-tctaaaa--------t------------- Cow tcctctagccacctcatcgcagt-------tgacaactga-ccttaaa--------t------------- Horse tcctctagacttctgatcacatt-------ccacagttga-cctaaaa--------t------------- Chinese pangolin ttctctaaccttctgaccacatt-------ccacaactga-cct--aa--------t------------- Dog tcctctagccttctgaccacatt-------ctatatttga-cttaaaa--------t------------- Hawaiian monk seal tcctctggccttctgaccacatt-------ctataattgaccttaaaa--------t------------- Elephant tcctctaatattctgaccacattcaaatttccacaattgg-cccaaaa--------a------------- Sheep ====================================================================== Opossum ====================================================================== Shrew ====================================================================== Hedgehog ====================================================================== Pika ====================================================================== GCF_003668045 ---------------------------------------------------------------------- Rabbit ====================================================================== Bushbaby ====================================================================== Tenrec ====================================================================== Tree shrew ====================================================================== Zebrafish ====================================================================== X. tropicalis ====================================================================== Chicken ====================================================================== Lamprey ====================================================================== Mouse ------g Rat ------g Beaver ------- Squirrel tggtctg Guinea pig tgcttta Human ggttttg Chimp ggttttg Bonobo ggttttg Gorilla ggttttg Rhesus ggttttg Marmoset gggttta Tarsier tggtttg Malayan flying lemur tggtttt Pig ------- Dolphin ------- Cow ------- Horse ------- Chinese pangolin ------- Dog ------- Hawaiian monk seal ------- Elephant ------- Sheep ======= Opossum ======= Shrew ======= Hedgehog ======= Pika ======= GCF_003668045 ------- Rabbit ======= Bushbaby ======= Tenrec ======= Tree shrew ======= Zebrafish ======= X. tropicalis ======= Chicken ======= Lamprey ======= Inserts between block 56 and 57 in window B D Dolphin 19bp B D Cow 19bp B D Horse 19bp B D Chinese pangolin 19bp B D Dog 19bp B D Hawaiian monk seal 19bp Alignment block 57 of 438 in window, 37097733 - 37097788, 56 bps B D Mouse --------------------taccaagcagt--ttgtcctgaccatgctcatagtttaaacctggttgtt B D Rat --------------------tttcaactagt--ttgtcctgcccatgtttaaagtttaaatccagttgtt Beaver --------------------ttccaagcagt--atatccaatctaagatcacagtttaaatctggttgtt B D Squirrel --------------------cccaagtcagt--atatccagttcaagatatgagtttggatctagttgtt B D Guinea pig --------------------ccaaaaccagtacatacccagtcaaagttcacagtttaaatctggtcatt B D Human --------------------tccaaaccagt--ttatccaatccaaagtcacaggttaaatatggttatg B D Chimp --------------------tccaaaccagt--ttatccaatccaaggtcacaggttaaatatggttatg B D Bonobo --------------------tccaaaccagt--ttatccaatccaaggtcacaggttaaatatggttatg B D Gorilla --------------------tccaaaccagt--ttatccaatccaaggtcacaggttaaatatggttatg B D Rhesus --------------------tccaaaccagt--ttattcaatccaagatcacaggttaaatgtggttatg B D Marmoset --------------------tccaaagcagt--ttatccaatccaagatcacaggttaaatatggttaca B D Tarsier --------------------tccaaaccagt--atatccaatccaagatcacagattaaatctggctgtg B D Malayan flying lemur --------------------tccaaatcagg--atactcaatccaagatcagaggttaaatctagctatg B D Pig ------------------------taccttt--atacc---------------agttaaatatggttacg B D Dolphin --------------------tccaaaccagt--atatcca-----agatcacagattaaaaatggttatg B D Cow --------------------tccaaaccagt--atatccaattcgagaccacaggttaaaaacggttatg B D Sheep --------------------tccaaaccagt--atatccaattcaagaccacaggttaaaaactgttatg B D Horse --------------------tccaaaccaat--atatcc-----aagatcacgagttaaatctgattatg B D Chinese pangolin --------------------tccaaaccagt--atatccactttaagaacacaggtaaaatctggttttg B D Dog --------------------tccaaaccaat--atatcagatttaagatcacagatgaagtctggttatg B D Hawaiian monk seal --------------------tccaaaccaat--atatcagattcaagatcacaagttaaatctggttatg B D Elephant tatcctttacaactggtttgtccataccagt----atccaatccaagatcacaggttacatctggttatg B D Opossum ====================================================================== B D Shrew ====================================================================== B D Hedgehog ====================================================================== B D Pika ====================================================================== GCF_003668045 ---------------------------------------------------------------------- B D Rabbit ====================================================================== B D Bushbaby ====================================================================== B D Tenrec ====================================================================== B D Tree shrew ====================================================================== B D Zebrafish ====================================================================== B D X. tropicalis ====================================================================== B D Chicken ====================================================================== B D Lamprey ====================================================================== Mouse -atctatct Rat -gcctatct Beaver -gttttcct Squirrel -ctcttcct Guinea pig -atatttct Human -ttcct--- Chimp -ttcct--- Bonobo -ttcct--- Gorilla -ttcct--- Rhesus -ttcct--- Marmoset -ttcct--- Tarsier -ctcct--- Malayan flying lemur -ttcct--- Pig -ttcct--- Dolphin -ttcct--- Cow -tttct--- Sheep -tttct--- Horse -ttcct--- Chinese pangolin tttttt--- Dog -ttcct--- Hawaiian monk seal -ttcct--- Elephant -tttct--- Opossum ========= Shrew ========= Hedgehog ========= Pika ========= GCF_003668045 --------- Rabbit ========= Bushbaby ========= Tenrec ========= Tree shrew ========= Zebrafish ========= X. tropicalis ========= Chicken ========= Lamprey ========= Inserts between block 57 and 58 in window Beaver 199bp Alignment block 58 of 438 in window, 37097789 - 37097789, 1 bps B D Mouse g B D Rat t B D Squirrel t B D Guinea pig t B D Human t B D Chimp t B D Bonobo t B D Gorilla t B D Rhesus t B D Marmoset t B D Tarsier t