Multiz Alignments of 35 Vertebrates

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Capitalize exons based on show bases

Place cursor over species for alignment detail. Click on 'B' to link to browser for aligned species, click on 'D' to get DNA for aligned species.
Alignment block 1 of 590 in window, 37090849 - 37090948, 100 bps B D Mouse ctcactaagtataaacctcgagtttgtaaaagtgagcttgtctcggataaggcgctcaggaggcgcctca B D Rat ctcgctgagtatcaacctggagtttgtgaaagtgagcctgtcccggatcaggcgctcaggaggagcctcg GCF_003668045 ctcattaagtataaaccttgagtttgtaaaagtgagtttgtctcgaataaggcgctcaggaggtacctca Beaver ctcactcagcataaaccttgaatttgtaaaagtgagtttgtctcggataaggcgttcaggaggtgcctca B D Squirrel ctcactcagtataaaccttgaatttgtgaaagtgagtttgtctcgaataaggcgttcaggaggtgcctca B D Rabbit ctctcttagtataaaccttgaatttgtaaaagtgagtttgtctcgaataaggcgttctggaggcgcctca B D Pika ctctcttagtataaaccttgaatttgtgaaagtgagtttgtctcggataaggcgttctggaggtgcctcg B D Human ttcactcagtataaaccttgagtttgtaaaagtgagtttgtcacggatcaggcgttcaggaggtgcctca B D Chimp ttcactcagtataaaccttgagtttgtaaaagtgagtttgtcacggatcaggcgttcaggaggtgcctca B D Bonobo ttcactcagtataaaccttgagtttgtaaaagtgagtttgtcacggatcaggcgttcaggaggtgcctca B D Gorilla ttcactcagtataaaccttgagtttgtaaaagtgagtttgtcacggatcaggcgttcaggaggtgcctca B D Rhesus ttcactcagtataaaccttgagtttgtaaaagtgagtttgtcacggatcaggcgttcaggaggtgcctca B D Marmoset ttcactcagtataaaccttgagtttgtaaaagtgagtttgtcacggatcaggcgttcaggaggtgcctca B D Tarsier ttcactcagtataaaccttgaatttgttaaagtgagtttgtctcggataaggcgttcaggaggcgcctca B D Bushbaby ttctcttagcataaaccttgaatttgtaaaagtgagtctgtctcggataaggcgttcaggaggtgcctca B D Tree shrew ctcactcagtataaatcttgaatttgtaaaagtgagtttgtctcggataagacgttcaggaggtgcctca B D Malayan flying lemur ctcactcagtataaaccttgaatttgtaaaagtgagtttgtctagaatgaggcgttcaggaggtgcctca B D Pig ctcactcagtataaatctcgagtttgtaaaagtgagtttgtctcggataagacgttcaggaggtgcctca B D Dolphin ctcactcagtataaatctcgagtttgtaaaagtgagtttgtctcggataaggcgttctggaggtgcctca B D Cow ctcactcagtataaatctcgagtttgtaaaagtgagtttgtctcggataaggcgttctggaggtgcctca B D Sheep ctcactcagtataaatcttgagtttgtaaaagtgagcttgtctcggataaggcgttctggaggtgcctca B D Horse ctcactcagtataaaccttgagtttgtaaaagtgagtttgtctcgaataaggcgttcaggaggtgcctca B D Chinese pangolin ctcacttagtataaaccttgagtttgtaaaagtgagtttgtctcggatacggcggtcaggaggtgcatca B D Dog ctcactcagtataaaccttgaatttgtaaaagtgagtttgtctcggataaggcgttcaggaggagcctca B D Hawaiian monk seal ctcactcagtataaaccttgaatttgtaaaagtgagtttgtctcggataaggcgctcaggaggtgcctca B D Hedgehog ctcactcagtataaaccttgagtttgtgaaagtgagtctgtcccggataaggcgttcaggaggtgcctcg B D Shrew ctcactcagtataaatcttgagttcgtaaaagtgagtttgtctcggataaggcgttcaggcggtgcctcc B D Elephant ctccctcagtataaaccttgaatttgtaaaagtgagtttgtctcggataaggcgttcaggaggtgcctca B D Tenrec ttccctcagtataaaccttgaattcgtaaaagtgagtttgtctcgcataagacgttcaggaggtgcctca B D Opossum ttccctcagtataaacctggagtttgtgaaagtgagcctgtcccgaatcagacgttctggaggtgcctcg B D Chicken ttccttgagcattaaccttgagtttgtgaaagtcagcctgtcacgaataaggcgttcaggaggctcctca B D X. tropicalis ctctcttagtatcaatctagagtttgttaaggtcagtctgtccagaatgagacgatcaggtggagcttca B D Zebrafish ctctctctccatcaacttggagtttgttaaagtcagtctttccaggatgagacgcacaggatgtccagca B D Lamprey ctcgctgagcatcaacctggagtttgtgaaggtcagtctatcgcgcatgcgcaagacaggagctgtgctc B D Guinea pig ====================================================================== Mouse ttttttgaaagtc---aatctgtaagcaagtct Rat ttctctgagagtc---aatctgtgagcaagtct GCF_003668045 ttttttgaaagtc---aatctgtgagcaagtct Beaver ttttttgaaagtc---agtctgtaagcaagcct Squirrel ttttttgaaagcc---aatctataaacaagtct Rabbit ttttttgaaagtc---aggctgtgagcaagtct Pika ttttttgaaagtc---agactgtgaacaagtct Human ttttttgaaagtc---agtctgtaagcaagtct Chimp ttttttgaaagtc---agtctgtaagcaagtct Bonobo ttttttgaaagtc---agtctgtaagcaagtct Gorilla ttttttgaaagtc---agtctgtaagcaagtct Rhesus ttttttgaaagtc---agtctgtaaacaagtct Marmoset ttttttgaaaatc---agtctgtaagcaagtct Tarsier ttttttgaaagtc---agtctgtaagcaagtct Bushbaby ttttttgaaagtc---catctgtaagcaagtct Tree shrew ttttttgagagtc---agtctataagcaaatct Malayan flying lemur ttttttgaaagtc---agtctataaacaagtct Pig ttttttgaaagtc---agtctgtaagcaagtct Dolphin ttttttgaaagtc---agtctgtaagcaagtct Cow ttttttgaaagtc---agtctgtaagcaagtct Sheep ttttttgaaagtc---agtctgtaagcaagtct Horse ttttttgaaagtc---agtccataagcaagtct Chinese pangolin ttttttgaaagtc---agtctgtaagcaagtct Dog ttttttgaaaatc---agtctgtaagcaagtct Hawaiian monk seal ttttttgaaagtc---agtctgtaagcaaatct Hedgehog tttttcgaaagtc---catctatgagcaagtct Shrew tttttcgaaagtc---agtctgtaagcaagtct Elephant ttttttgaaagtc---agtctgtaagcaagtct Tenrec ttttttgaaagtc---catctataagcaagtct Opossum ttttttgaaagtc---agatggcaagcaagtct Chicken ttttttgagagtc---agtctgcaagcaaagct X. tropicalis ttctttgagagtg---tatctgctaacaaaacc Zebrafish tttattgatactt---tcattgccagcaagggt Lamprey acctacgagaccccttcttcttccgggaagacc Guinea pig ================================= Alignment block 2 of 590 in window, 37090949 - 37090988, 40 bps B D Mouse acaagcaaaatggacactacattaatcaatatatctggta B D Rat tcaagcaaaatggacaccacactaatcaatatatctggta GCF_003668045 acaagcaaaatggatactacattaatcaatatatctggta Beaver acaagcaaaatggacactacattaataaatatatctggta B D Squirrel acaagcaaaatggacactacgctaataaatatatctggta B D Rabbit acaaacaaaatggacactacattaataaatatatctggta B D Pika tcaaacaaaatggatactacattaataaatatatctggta B D Human gcaagcaaaatggatactacgttaataaatatatctggta B D Chimp gcaagcaaaatggatactacgttaataaatatatctggta B D Bonobo gcaagcaaaatggatactacgttaataaatatatctggta B D Gorilla tcaagcaaaatggatactacgttaataaatatatctggta B D Rhesus acaagcaaaatggacactacattaataaatatatctggta B D Marmoset gcaagcaaaatggacactactttaataaatatatctggta B D Tarsier gcaagcaaaatggacactaccttaataaatatatctggta B D Bushbaby gcaagcaaaatggacactacattaataaatatatctggta B D Malayan flying lemur gcaagcaaaatggacactacgttaataaatatatctggta B D Pig gcaagcaaaatggacactacactaataaatatatccggta B D Dolphin gcaagcaaaatggacactacactaataaatatatctggta B D Cow gcaagcaaaatggatactacactaataaatatatctggta B D Sheep gcaagcaaaatggatactacactaataaatatatctggta B D Horse acaagcaaaatggacactacactaataaatatatctggta B D Chinese pangolin gcaagcaaaatggacactacactaataaatatatctggta B D Dog gcaagcaaaatggacactacactaatcaatatatctggta B D Hawaiian monk seal gcaagcaaaatggacactacactaatcaatatatctggta B D Hedgehog ccaagcaaaatggacaccacactgatcaacatctctggta B D Shrew tcaagcaaaatggacaccacactaataaatatatctggta B D Elephant gcaagcaaaatggacactacgttaataaatatatctggta B D Tenrec gcaagcaaaatggatactacattaatcaatatatctggta B D Opossum acaaacaaaatggacactacgctaataaatatatccggta B D Chicken accagcaagatagatacgactttgataaacatctctggta B D X. tropicalis cctagtaagatggataccactttaatcaacatatcaggta B D Zebrafish ---ggaaaaatggacacaacattaatcaatatttcaggta B D Lamprey gggaacaagatggagaccacgctgatcaacatctcgggta B D Guinea pig ======================================== Inserts between block 2 and 3 in window B D Hedgehog 561bp B D Chicken 3bp B D Zebrafish 1996bp B D Lamprey 667bp Alignment block 3 of 590 in window, 37090989 - 37090999, 11 bps B D Mouse --ttctcttttat B D Rat --ttctcctttat GCF_003668045 --ttttattttat Beaver --ttcagttttat B D Squirrel --ttcagtttttt B D Rabbit --ataaattt--- B D Pika --ttcaattttat B D Human --ctcaattttat B D Chimp --ctcaattttat B D Bonobo --ctcaattttat B D Gorilla --ctcaattttat B D Rhesus --ctcaattttat B D Marmoset --ctcaattttat B D Tarsier --ttcagttttat B D Bushbaby --ttcaaattcat B D Malayan flying lemur --ttcaattttat B D Pig --ttcagctttat B D Dolphin --ttcaattttat B D Cow --ttcaattttat B D Sheep --ttcaattttat B D Horse --ttcaactttat B D Chinese pangolin --ttcaattttat B D Dog --cttaattgtat B D Hawaiian monk seal --cttaattgtat B D Shrew --tttaatttcc- B D Elephant --ttcaattttat B D Tenrec --tttgattttat B D Opossum --ttttatcccat B D Chicken --ctttttttttt B D X. tropicalis acagctggtttac B D Guinea pig ============= B D Hedgehog ============= B D Zebrafish ============= B D Lamprey ============= Inserts between block 3 and 4 in window B D Opossum 587bp Alignment block 4 of 590 in window, 37091000 - 37091009, 10 bps B D Mouse -----agtttt--t-aa-t B D Rat -----agtttt--t-aa-t GCF_003668045 -----agtttt--t-aa-t Beaver -----aatttc--t-aa-t B D Squirrel -----aaattt--t-aa-t B D Rabbit ------------------t B D Pika -----agtttt--t-aaat B D Human -----agtttt--taaa-t B D Chimp -----agtttt--taaa-t B D Bonobo -----agtttt--taaa-t B D Gorilla -----agtttt--taaa-t B D Rhesus -----agtttt--taaa-t B D Marmoset -----agtttt--taaa-t B D Tarsier -----agtctt--t-at-t B D Bushbaby -----tgtttt--ttaa-t B D Malayan flying lemur -----agtttt--t-aa-t B D Pig -----tgcttt--taaa-t B D Dolphin -----agtttt--ttaa-t B D Cow -----a-tttt--ttaa-t B D Sheep -----a-tttt--ttaa-t B D Horse -----agtttt--ttaa-t B D Chinese pangolin -----agctct--ttaa-t B D Dog -----agttatagtttc-t B D Hawaiian monk seal -----agtttc--ttaa-t B D Shrew -------tttt--tctg-t B D Elephant -----agtttt--taaa-t B D Tenrec -----actttt--taaa-t B D Chicken ------tcctt--gtaa-t B D X. tropicalis agtaaggcttt--tgc--- B D Guinea pig =================== B D Opossum =================== B D Hedgehog =================== B D Zebrafish =================== B D Lamprey =================== Inserts between block 4 and 5 in window B D Chicken 1283bp Alignment block 5 of 590 in window, 37091010 - 37091017, 8 bps B D Mouse taaaatat B D Rat taagatat GCF_003668045 tagaatat Beaver taaaatat B D Squirrel taaggtat B D Rabbit taaaatat B D Pika taaaatat B D Human taaaatac B D Chimp taaaatag B D Bonobo taaaatac B D Gorilla tgaaatac B D Rhesus taaaatat B D Marmoset taaaatat B D Tarsier caagatgt B D Bushbaby ta------ B D Malayan flying lemur taaaatat B D Pig taaaatac B D Dolphin taaaatac B D Cow tgaaatat B D Sheep tgaaatat B D Horse taaaatat B D Chinese pangolin tacaa--- B D Dog taagatac B D Hawaiian monk seal taaaatgc B D Shrew taaaatgt B D Elephant caaaatgt B D Tenrec -aaaattt B D X. tropicalis taaagtgg B D Guinea pig ======== B D Opossum ======== B D Hedgehog ======== B D Zebrafish ======== B D Chicken ======== B D Lamprey ======== Inserts between block 5 and 6 in window B D Shrew 535bp Alignment block 6 of 590 in window, 37091018 - 37091035, 18 bps B D Mouse catttt-aaacaatgaa-------ct B D Rat catttt-aaacaatgaa-------tc GCF_003668045 tattgt-aaagaattaaacagtgcct Beaver tgtttt-ccagaattaaatgatggcc B D Squirrel tgtttt-ccagaattaa-taatgacc B D Rabbit tatttt-cctgaattaaataatggtc B D Pika tatttt-cctgaactaaataatggcc B D Human tgtttt-ccaaaattaaataatggcc B D Chimp tgtttt-ccaaaattaaataatggcc B D Bonobo tgtttt-ccaaaattaaataatggcc B D Gorilla tgtttt-ccaaaattaaataatggcc B D Rhesus tgtttt-ccaaaattaaataatggcc B D Marmoset tgtttt-ccaaaattaaataatggcc B D Tarsier tgtttt-ccagaattaaataatggtc B D Bushbaby ---------------aaataatgacc B D Malayan flying lemur tgtttt-ccagaattaaataatagcc B D Pig tgtttt-ccagaattaaataagagcc B D Dolphin tgtttttccagaattaaataagggcc B D Cow tgttttcccagaattaaataagggcc B D Sheep tgttttcccagaattaaataagggcc B D Horse tattat-ccagaattacataagggcc B D Chinese pangolin tgtttt-ccagaattaaataagggcc B D Dog tgtttt-tcagaat----taagagcc B D Hawaiian monk seal tgtttt-tcagaattaagtaagggcc B D Elephant tgtttt-ctagaattaaatggtggct B D Tenrec tgtttt-tcagtgttagatggtggct B D X. tropicalis -atttg-atataataaatt------- B D Guinea pig ========================== B D Opossum ========================== B D Shrew ========================== B D Hedgehog ========================== B D Zebrafish ========================== B D Chicken ========================== B D Lamprey ========================== Inserts between block 6 and 7 in window B D X. tropicalis 79bp Alignment block 7 of 590 in window, 37091036 - 37091045, 10 bps B D Mouse ctatttttaa B D Rat t--cttttaa GCF_003668045 ctgactttaa Beaver tctgttttaa B D Squirrel tctgctttca B D Rabbit tcttttttt- B D Pika tctttttaa- B D Human tctgttttaa B D Chimp tctgttttaa B D Bonobo tctgttttaa B D Gorilla tctgttttaa B D Rhesus tctgttttag B D Marmoset tctgttttaa B D Tarsier tctgatttta B D Bushbaby tctgttttaa B D Malayan flying lemur tctattttaa B D Pig tccttttt-- B D Dolphin tcctttt--- B D Cow tcctttt--- B D Sheep tcctttt--- B D Horse ttcttcttaa B D Chinese pangolin tcctttttaa B D Dog tcttttttaa B D Hawaiian monk seal tcctttttaa B D Elephant tccctattag B D Tenrec tcccatttag B D Guinea pig ========== B D Opossum ========== B D Shrew ========== B D Hedgehog ========== B D Zebrafish ========== B D X. tropicalis ========== B D Chicken ========== B D Lamprey ========== Inserts between block 7 and 8 in window B D Squirrel 1bp Alignment block 8 of 590 in window, 37091046 - 37091046, 1 bps B D Mouse t B D Rat t Beaver c B D Rabbit t B D Pika c B D Human t B D Chimp t B D Bonobo t B D Gorilla t B D Rhesus t B D Marmoset t B D Tarsier a B D Bushbaby c B D Malayan flying lemur c B D Pig a B D Cow a B D Sheep a B D Horse c B D Chinese pangolin t B D Dog t B D Hawaiian monk seal c B D Elephant c B D Tenrec c B D Guinea pig = B D Opossum = B D Shrew = B D Dolphin - B D Hedgehog = GCF_003668045 - B D Squirrel = B D Zebrafish = B D X. tropicalis = B D Chicken = B D Lamprey = Inserts between block 8 and 9 in window B D Rabbit 378bp Alignment block 9 of 590 in window, 37091047 - 37091084, 38 bps B D Mouse agtgcttaaatattaagtatacata--aacattaagc-tt--a B D Rat agtggttaaatattgagaatatttg--aacattaagc-tt--a Beaver agtgtttaaatatgaagtacactt---aatactaagc-tt--- B D Squirrel --catttaaatatgaagcatgctt---aatagcaagc-ttt-a B D Rabbit agtttttaaatattagtttccctt---a-----actt-ttt-g B D Pika aatgtttaaatgttagttccctta---a----taaga-ttt-g B D Human agtgtttaaatattaagt-cactt---aatgttaagc-tttca B D Chimp agtgtttaaatattaagt-cactt---aatgttaagc-tttca B D Bonobo agtgtttaaatattaagt-cactt---aatgttaagc-tttca B D Gorilla agtgtttaaatattaagt-cactt---aatgttaagc-tttca B D Rhesus agtgtttaaatattaagt-cactt---aatgttaagc-tttca B D Marmoset agtgtttaaatattaagt-caatt---aatgttatgcttttca B D Tarsier attgttcaaatattaagtatgctt---aatattaagc-tttca B D Bushbaby agtgtttaactattcagtatactt---aatgttaagc-tttca B D Malayan flying lemur agtttttaaatattaagtacaccc---aatattaagc-ttttg B D Pig agtgtttaaatattaaatatatttagtaatattaagc-attta B D Dolphin cgtgtttaattattaaatacatttagtaatattaagc-attca B D Cow agtgtttaaatattaaata-atttaataacattaagc-attta B D Sheep agtgtttaaatattaaata-atttaataatattaagc-attta B D Horse attgtttcagtattaaatacatttaataaaattaagc-tttta B D Chinese pangolin ggcatttaaatattaaataca-----------------tttta B D Dog --tgtttaaatattaaatacatataataatgttaagc-tttta B D Hawaiian monk seal agtgtttta-------------atagtaacattaagc-tttta B D Elephant agtgtttgcatattaaatacatttaataatgttaagc-ttt-- B D Tenrec a--gtttgtatattaaatacatttaaaaatattaatc-ttt-- B D Guinea pig =========================================== B D Opossum =========================================== B D Shrew =========================================== B D Hedgehog =========================================== GCF_003668045 ------------------------------------------- B D Zebrafish =========================================== B D X. tropicalis =========================================== B D Chicken =========================================== B D Lamprey =========================================== Inserts between block 9 and 10 in window B D Elephant 14bp B D Tenrec 215bp Alignment block 10 of 590 in window, 37091085 - 37091129, 45 bps B D Mouse gtgat--aaa--------------ggtaagaagt-t-cagcctagcctacaaagac--tctcaac B D Rat gtgat--aaa--------------ggt---aagt-t-cagcctagcctac-aagac--tctcccc Beaver -tgat--gat--------------ggggagaaat-gacagtccagattat-agtaccatcttaac B D Squirrel gtggc--aag------acaaactcagggggaaat-g--ggctcagacccc-agggctgtcttca- B D Rabbit gtgat--aagtt-gatttaaa---gtagaagaat-gacagtacagcttac-tgtgctttgtcagt B D Pika gggat--aag-t-gcaataaa---gcagaagagt-gacagtacagcttac-tgtgc----tcagt B D Human gtgat--aagtt-gatataaa---ggagaggaat-----gcccagcctac-ggtactgtgtcaat B D Chimp gtgat--aagtt-gatataaa---ggagaggaat-----gcccagcctac-ggtactgtgtcaat B D Bonobo gtgat--aagtt-gatataaa---ggagaggaat-----gcccagcctac-ggtactgtgtcaat B D Gorilla gtgat--aagtt-gatataaa---ggagaggaat-----gcccagcctac-ggtactgtgtcaat B D Rhesus gtgat--aagtt-gatataaa---ggagaggaat-----gcccagcctat-ggtactgtctcaat B D Marmoset gtgat--aagttggatttaaa---ggagaggaat-----gcccagcctac-ggtactgtctcagt B D Tarsier atgat--aatct-gatttaaa---ggagaggaat-gacagtccagcctac-tgtactatctcagt B D Bushbaby gtgataaaaatt-tattaaaa---gtagagtaac----agtctagcttac-tgtactgtctcagt B D Malayan flying lemur gtgat--aagct-gatttaaa---ggagagaaat-gacagtctagcctgc-tgtactatctcagt B D Pig gtgac--aaatt-gatttaac---aa--------------ctcaaccaa---gtactagctcagt B D Dolphin gtgac--aaatt-gatttaaa---ggagaagaat-aactgtccagccaa---gtattatctcagt B D Cow gtgat--aagct-gatttaaa---ggagaagaat-aact-tctagccaa---gtactatctcagt B D Sheep gtaat--aaact-gatttaaa---ggaggagaa--------ctagctaa---gtactatctcagt B D Horse gtggt--aaatt-gatctaaa---gaggaggaataaacagtccagcctac-tgtactgtctcagt B D Chinese pangolin ctgat--aaatt-gatttaag---ggagaagaataaaca-tccagcttag-tgtactatctcagt B D Dog gtg------a-t-gatttaag---t--agggaat-aatagtctaggccaa-tgtgctatctcatt B D Hawaiian monk seal gtgat--gaa-t-gatttaaa---tgagaggagt-aacagtctaggccaa-tgtactctctcagt B D Elephant -------------tttttaaa---ggagagatga-----gtccagatgacaaatat--------- B D Guinea pig ================================================================= B D Opossum ================================================================= B D Shrew ================================================================= B D Hedgehog ================================================================= GCF_003668045 ----------------------------------------------------------------- B D Tenrec ================================================================= B D Zebrafish ================================================================= B D X. tropicalis ================================================================= B D Chicken ================================================================= B D Lamprey ================================================================= Alignment block 11 of 590 in window, 37091130 - 37091217, 88 bps B D Mouse tcaggct---gttagtgtt-agaa-------------tgcttt---ctag--------g----t------ B D Rat tcaggct---gctagtgtt-gg---------------cgtctt---ctgg--------g----c------ Beaver ccaagca---ataaatgtt-ag------------------------------------------------ B D Squirrel --agtgt---atcagtgtg-ggcagtattggcactgtcgtttttagttaa--------a----a------ B D Rabbit ccaagta---gtcaatgtt-agaaata----------tggttt---ctagataa----a----t------ B D Pika gccaata---atcagtgtt-agaaaag----------ttgttt---ctag--------a----t------ B D Human ccaagta---ataaatgtt-aggaata----------taattt---ctagataa----a----t------ B D Chimp ccaagtg---ataaatgtt-aggaata----------taattt---ctagataa----a----t------ B D Bonobo ccaagtg---ataaatgtt-aggaata----------taattt---ctagataa----a----t------ B D Gorilla ccaagtc---ataaatgtt-aggaata----------taattt---ctagataa----a----t------ B D Rhesus ccaagta---atcagtgtt-aggaata----------taattt---ctagataa----a----t------ B D Marmoset ccacgta---attaatgtt-agggata----------tgagtt---ctaggtaa----a----t------ B D Tarsier ccaagta---atcagtgtc-agaaata----------tgattt---ctagataa----g----------- B D Bushbaby cca--tt---acaag-gtt-agaaata----------tggttt---ctagataa----acggat------ B D Tree shrew tcaggta---atcagtgttaagagata----------ctattt---ctagataa----a----ta----- B D Malayan flying lemur tcaagta---ataaatatt-agacata----------taattt---ctagataa----a----t------ B D Pig gcaggta---atcaatctt-ataaata----------agattt---ctagataaatatg----t------ B D Dolphin ccaggta---atcaatgtt-agaaata----------tgattg---ctagataaataca----t------ B D Cow ccagtgagatatcagtgtt-agaaata----------ggattt---ctagatacataca----t------ B D Sheep ccagtgagatatcaatgtt-agaagta----------ggattt---ctagatacataca----t------ B D Horse ccaagta---atcaatgtt-agaaata----------a---tt---ctagataaacaca----t------ B D Chinese pangolin ctaagca---atcagtgtt-agaaata----------cgattt---ctagataaataca----t------ B D Dog ccaagta---atcagtgtt-aagaata----------tgattt---ctagataattgca----t------ B D Hawaiian monk seal ccaagta---agcaatgtt-aggaata----------tgattt---ctaggtaaatgca----t------ B D Elephant ----------------------------------------------------------------gtgaag B D Guinea pig ====================================================================== B D Opossum ====================================================================== B D Shrew ====================================================================== B D Hedgehog ====================================================================== GCF_003668045 ---------------------------------------------------------------------- B D Tenrec ====================================================================== B D Zebrafish ====================================================================== B D X. tropicalis ====================================================================== B D Chicken ====================================================================== B D Lamprey ====================================================================== Mouse --aga----ca---tatccaagggta-a-aaaatacca-aattaaagaacaaaaaattcttatttttt-- Rat --aga----ca---tatccaa----------------------------------------atagttt-- Beaver ----a----aa---tagctaa----------------------------------------aaa---t-- Squirrel --aga----ca--ttaggcaaagcca-a-aataggcct-gattagataactgaa-------aag---c-- Rabbit --aga----tgtgtcaccaaaaggct-agaacacagct-aattgaatt-------------agttctt-- Pika --tga----tttttcaccaaaaggtt-a-aacagacct-aattgaatt-------------atttctt-- Human --aga----catatcacccaagggcc-a-agtatgcct-aattaaatcagtaaaagtt---gcttctt-- Chimp --aga----catatcacccaagggcc-a-agtatgcct-aattaaatcagtaaaagtt---gcttctt-- Bonobo --aga----catatcacccaagggcc-a-agtatgcct-aattaaatcagtaaaagtt---gcttctt-- Gorilla --aga----catatcacccaagggcc-a-agtatgcct-aattaaatcagtaaaagtt---gcttctt-- Rhesus --aga----catatcacccaagggcc-a-aatatgcccaaattacatcagtaaaagtt---gcgtctt-- Marmoset --aga----cctatcactcaaggacc-a-aatatacct-aattaaatcaataaaagtt---acttctt-- Tarsier -----------taccttccaagagccaa-aatgaacct-aattaaaccactaagcatt---g---ctt-- Bushbaby --ata----catgtcacccaaggggcaa-aatatgcct-cattaaatcactaaaagtt---a---ctt-- Tree shrew --aga----catatcacccaa-ggccaa-aatatgcct-gattaaatcactaaaaatt---g---ctt-- Malayan flying lemur --aga----catatcacccaagggacaa-aatatacct-aattaaatcactgaaaatt---gcctctt-- Pig --aga----aatatcacccaaaggccaa-aatatgcct-aattgaataactgaaaact---actacct-- Dolphin --gga----aatatcacccaagggccaa-aatatgcct-aattgaatcactgaaaact---gcttctt-- Cow --gga----aatatcacccaagggccaa-aatatgcct-atttaagtcgctaaaaact---gcttctt-- Sheep --gga----aatatcacccaagggccaa-aatatgcct-atttaagtcgctaaaaact---gcttctt-- Horse --aga----aatatcacctaaggactaa-aacatgcct-aattaaatcactgaaaa---------ctt-- Chinese pangolin --a-a----aacgttgtacaaaggccaa-aatatgtct-aatt-agtcactgaaag---------ttt-- Dog --atctattaatatcacccaaaggccaa-aatatgcct-agttaaatcactgaaaaat---gcttctt-- Hawaiian monk seal --aga----aatgtcacccaaaggccaa-agtatgcct-cgttaagtcactgaaaact---gcttctt-- Elephant tatta----cttatcattcaagggccaa-aatatacct-agttaaatcactgaagcat---gcttctttt Guinea pig ====================================================================== Opossum ====================================================================== Shrew ====================================================================== Hedgehog ====================================================================== GCF_003668045 ---------------------------------------------------------------------- Tenrec ====================================================================== Zebrafish ====================================================================== X. tropicalis ====================================================================== Chicken ====================================================================== Lamprey ====================================================================== Mouse -- Rat -- Beaver -- Squirrel -- Rabbit -- Pika -- Human -- Chimp -- Bonobo -- Gorilla -- Rhesus -- Marmoset -- Tarsier -- Bushbaby -- Tree shrew -- Malayan flying lemur -- Pig -- Dolphin -- Cow -- Sheep -- Horse -- Chinese pangolin -- Dog -- Hawaiian monk seal -- Elephant ct Guinea pig == Opossum == Shrew == Hedgehog == GCF_003668045 -- Tenrec == Zebrafish == X. tropicalis == Chicken == Lamprey == Inserts between block 11 and 12 in window B D Pig 5524bp B D Horse 3bp B D Chinese pangolin 3bp B D Dog 3bp B D Hawaiian monk seal 3bp Alignment block 12 of 590 in window, 37091218 - 37091270, 53 bps B D Mouse tattttccttcttcttggttatgagttcctaaaatttatg------ac----ttt--------tta---- B D Rat ttatttgcttcttcttggttatgagttcataaaatttctg------ac----ttt--------ttc---- Beaver tactttacttcttctctaccatgaattgctaaaatttctg------at----ttt--------tta---- B D Squirrel ttcttcacttcctctctaccatgaattggtaacatttctg------ac----ttt--------tca---- B D Rabbit ttctt-acttcttctccaccatgaattaataacacttctg------ac----ttt--------gtt---- B D Pika ctcttcacttctttttcaccatgaattaataacaattct--------t----ttt--------gta---- B D Human ttcttcactttttctccaccatgaattggtacagtttc--------------ttt--------ttg---- B D Chimp ttcttcactttttctccaccatgaattggtacagtttc--------------ttt--------ttg---- B D Bonobo ttcttcactttttctccaccatgaattggtacagtttc--------------ttt--------ttg---- B D Gorilla ttcttcactttttctccaccatgaattggtacagtttc--------------ttt--------ttg---- B D Rhesus ttcttcagtttttatccaccatgaattggtacagtttc--------------ttt--------ttg---- B D Marmoset ttcttcaattcttctccac---gaattgttatcgttttgg------------ttt--------tca---- B D Tarsier ttcttcacttcttcacttctct-aattggtaaaatttctg------acttgctat--------ttg---- B D Bushbaby ttcttcgccactgctctaccatgaattggtaaaagttcta------actt--ttt--------ttg---- B D Tree shrew ttctttactttttctctaccataaattaggaaaacatctg------at----ttg--------tagaaaa B D Malayan flying lemur ttcttcac-tcttctctactatgaatcagtaaaacttctg------ac----ttt--------ttgtttg B D Dolphin -----cgc---ttctctaccatgaattggtaaagtttatg------at----tttttgt----ttg---- B D Cow -----cac---ttctctaccatgagttggtacaaattctg------ac----ttatttt----ttg---- B D Sheep -----cac---ttctctaccatgagttggtacaacctctg------ac----ttatttt----ttg---- B D Horse ---ttcac---tgctctactatgaattggtaaaatttcag------ac----tgt--------ttg---- B D Chinese pangolin ---tttac---ttctctaacgtgaattggtagaatttcta------ac----ttt--------ttg---- B D Dog ---tttac---ttctctaccatgaattggtaaaatttctg------at----ttttcattagctaa---- B D Hawaiian monk seal ---ttcac---ttctctaccatgaattggtaaactttctg------at----ttttcattagctta---- B D Elephant ----tcac-tcttctctattatgaattcgtaaaatttctactatttgc----ttt--------ttt---- B D Guinea pig ====================================================================== B D Opossum ====================================================================== B D Pig ====================================================================== B D Shrew ====================================================================== B D Hedgehog ====================================================================== GCF_003668045 ---------------------------------------------------------------------- B D Tenrec ====================================================================== B D Zebrafish ====================================================================== B D X. tropicalis ====================================================================== B D Chicken ====================================================================== B D Lamprey ====================================================================== Mouse ----tgtgt-- Rat ----tgtgt-- Beaver -----atgt-- Squirrel ----tttgt-- Rabbit ----tg----- Pika ----tg----- Human ----ttc---- Chimp ----ttc---- Bonobo ----ttc---- Gorilla ----ttc---- Rhesus ----ttt---- Marmoset ----taa---- Tarsier ----ttt---- Bushbaby ----ttt---- Tree shrew ----att---- Malayan flying lemur ttttatt---- Dolphin ----att---- Cow ----att---- Sheep ----att---- Horse ----att---- Chinese pangolin ----att---- Dog ----gtt---- Hawaiian monk seal ----gtt---- Elephant ----ttt--ta Guinea pig =========== Opossum =========== Pig =========== Shrew =========== Hedgehog =========== GCF_003668045 ----------- Tenrec =========== Zebrafish =========== X. tropicalis =========== Chicken =========== Lamprey =========== Inserts between block 12 and 13 in window B D Squirrel 346bp B D Rabbit 2bp B D Pika 2bp Alignment block 13 of 590 in window, 37091271 - 37091311, 41 bps B D Mouse atca------gc---------------------------------ttgtagatgtttac--atcact-aa B D Rat gtca------ac---------------------------------atgtagatgtttac--aacact-ag Beaver tttattttctaa---------------------------------ttataaatgcttaa--aacac--aa B D Rabbit ctt-------------------------------------------ttaaagtgc--------cccttga B D Pika ctta------aa---------------------------------gtgtaaatgc--------cgct--a B D Human ------ttctaa---------------------------------ttgtaaatgcttaa--aacact--a B D Chimp ------ttctaa---------------------------------ttgtaaatgcttaa--aacact--a B D Bonobo ------ttctaa---------------------------------ttgtaaatgcttaa--aacact--a B D Gorilla ------ttctaa---------------------------------ttgtaaatgcttaa--aacact--a B D Rhesus ------ttctaa---------------------------------ttataaatgcttaa--aacact--a B D Marmoset ------ttgtaagtgcttaaaacactaaaatgggatgaatgatgtttaaaaatgtttacttgatgtc--a B D Tarsier ------ttctaa---------------------------------ttgtaaatgcttaa--aatact--a B D Bushbaby ------ttctaa---------------------------------ttataaatgcttaa--aatact--a B D Tree shrew ------ttatat---------------------------------ttgtaaatgctaac--aacact--g B D Malayan flying lemur ------ttctaa---------------------------------ttgtaaatgtttaa--aacact--a B D Dolphin ------ttttca---------------------------------ttagaaattcttaa--aacact--a B D Cow ------ttttaa---------------------------------ttataaaatcttaa--aacact--a B D Sheep ------ttttaa---------------------------------ttataaaatcttat--aacact--a B D Horse ------ttctaa---------------------------------ttgtaaattcttaa--aacact--a B D Chinese pangolin ------ttctaa---------------------------------ttgtaaattcttaa--aacact--a B D Dog ------ttctga---------------------------------ttataaattcttaa--aacact--a B D Hawaiian monk seal ------ttctga---------------------------------ttgtaaattcttaa--aacact--a B D Elephant ---attttctga---------------------------------ttg-aaattcttaa--aacact--a B D Guinea pig ====================================================================== B D Opossum ====================================================================== B D Pig ====================================================================== B D Shrew ====================================================================== B D Hedgehog ====================================================================== GCF_003668045 ---------------------------------------------------------------------- B D Tenrec ====================================================================== B D Squirrel ====================================================================== B D Zebrafish ====================================================================== B D X. tropicalis ====================================================================== B D Chicken ====================================================================== B D Lamprey ====================================================================== Mouse aaatgggatgagt Rat caatgggatgagt Beaver aagagagatgagt Rabbit aaaagggatgatt Pika aaaagggatg--t Human aaacgggatgagt Chimp aaacgggatgagt Bonobo aaacgggatgagt Gorilla aaacgggatgagt Rhesus aaatgggatgagt Marmoset gaaaaccttgaat Tarsier aagggggatgact Bushbaby aatagggatgagt Tree shrew aagagggctgagt Malayan flying lemur aactgggatgagt Dolphin aaga--gatgagt Cow aggaagaatgggt Sheep aggaagaatgggt Horse aatagggataagt Chinese pangolin aagagggatgagt Dog at-aaggataag- Hawaiian monk seal atgagggatgat- Elephant aaagaagatgagt Guinea pig ============= Opossum ============= Pig ============= Shrew ============= Hedgehog ============= GCF_003668045 ------------- Tenrec ============= Squirrel ============= Zebrafish ============= X. tropicalis ============= Chicken ============= Lamprey ============= Inserts between block 13 and 14 in window B D Chinese pangolin 12077bp Alignment block 14 of 590 in window, 37091312 - 37091338, 27 bps B D Mouse agcttta-------------ataataagtcctactttgta-------------------- B D Rat aacctta-------------ataa-aagtgctgtgttgta-------------------- Beaver gacatta-------------aaaa-aaat-ttatttggca-------------------- B D Rabbit gatgtta---------------aa-aatttctgcttaata-------------------- B D Pika gacatta---------------aa-aatttctacttaata-------------------- B D Human gatgttt-------------a-aa-aatgtttacttgatg-------------------- B D Chimp gatgttt-------------a-aa-aatgtttacttgatg-------------------- B D Bonobo gatgttt-------------a-aa-aatgtttacttgatg-------------------- B D Gorilla gatgttt-------------a-aa-aatgtttacttgatg-------------------- B D Rhesus gatgttt-------------a-aa-aatgtttatttgagg-------------------- B D Marmoset ---------------------------tgtttgcatg----------------------- B D Tarsier gatgttt-------------g-aa-aatgtttatttggta-------------------- B D Bushbaby aatatta-------------g-aa-agtttttacttagtg-------------------- B D Tree shrew gatgtta-------------a-aacaatttgtatttggtg-------------------- B D Malayan flying lemur gacgtta-------------a-aa-aatttttacttggtg-------------------- B D Dolphin ---gttg-------------a-aa-attttttacttggtg-------------------- B D Cow ---gttg-------------a-aa-aatttttacttggta-------------------- B D Sheep ---gttg---------------aa-aatttttacttggaa-------------------- B D Horse ---ttta-------------a-ac-attttttacttagtg-------------------- B D Dog --ggtta-------------a-aa-aatttctacttggtg-------------------- B D Hawaiian monk seal --ggtta-------------a-at-tttttttacttagtg-------------------- B D Elephant gatgttgctaaaaaaaaaaaa-aa-aaactatagttgaagtcagaagatcttaagttgtg B D Guinea pig ============================================================ B D Opossum ============================================================ B D Pig ============================================================ B D Chinese pangolin ============================================================ B D Shrew ============================================================ B D Hedgehog ============================================================ GCF_003668045 ------------------------------------------------------------ B D Tenrec ============================================================ B D Squirrel ============================================================ B D Zebrafish ============================================================ B D X. tropicalis ============================================================ B D Chicken ============================================================ B D Lamprey ============================================================ Inserts between block 14 and 15 in window B D Rabbit 804bp B D Pika 37bp B D Human 74bp B D Chimp 74bp B D Bonobo 74bp B D Gorilla 74bp B D Rhesus 78bp B D Marmoset 52bp B D Tarsier 77bp B D Bushbaby 74bp B D Tree shrew 70bp B D Malayan flying lemur 86bp Alignment block 15 of 590 in window, 37091339 - 37091346, 8 bps B D Mouse ctagtagg--- B D Rat ttagtagg--- Beaver tcagaaag--- B D Dolphin ----tcat--- B D Cow ----tcgt--- B D Sheep ----tcat--- B D Horse ----tcat--- B D Dog ----ttgt--- B D Hawaiian monk seal ----tcat--- B D Elephant ---tttgtatc B D Rhesus =========== B D Guinea pig =========== B D Gorilla =========== B D Bonobo =========== B D Chimp =========== B D Human =========== B D Marmoset =========== B D Opossum =========== B D Pig =========== B D Chinese pangolin =========== B D Shrew =========== B D Hedgehog =========== B D Pika =========== B D Tarsier =========== GCF_003668045 ----------- B D Rabbit =========== B D Bushbaby =========== B D Tenrec =========== B D Squirrel =========== B D Tree shrew =========== B D Zebrafish =========== B D Malayan flying lemur =========== B D X. tropicalis =========== B D Chicken =========== B D Lamprey =========== Inserts between block 15 and 16 in window B D Rat 21bp Beaver 62bp B D Dolphin 79bp B D Cow 86bp B D Sheep 86bp B D Horse 78bp B D Dog 70bp B D Hawaiian monk seal 78bp B D Elephant 51bp Alignment block 16 of 590 in window, 37091347 - 37091444, 98 bps B D Mouse tctttgcattgtaacttgagtact----ta--------------------aaat-taagtgaatat-aac B D Rat tctttgcattgtaacttgaatact----ta--------------------aaat-taagtgaatat-aac Beaver tctttacattgtggcttgaattct----ta--------------------aaat-taaatgcatatggaa B D Pika -------ataatgaacaaagcacttttata--------------------aaac-taaatgcatattaaa B D Human cctttacattgcgatttgagtgtt----ta--------------------aaag-taaatgcaaatag-a B D Chimp cctttacatggcgatttgagtgtt----ta--------------------aaag-taaatgcaaatag-a B D Bonobo cctttacatggcgatttgagtgtt----ta--------------------aaag-taaatgcaaatag-a B D Gorilla cctttacattgcgatttgagtgtt----ta--------------------aaag-taaatgcaaatag-a B D Rhesus cctttacattgtgatttgagtatt----ta--------------------aaaattaaatgcaaacag-a B D Marmoset actttacgttgtgatttgaatatt----ta--------------------aaat-taaatgcaaatagaa B D Tarsier tcttgacattgtgatttcagtatt----ta--------------------aaat-taaatgcaagtagaa B D Bushbaby tctttgcattatgatctgaatatt----ta--------------------aaat---aatggatatggaa B D Tree shrew ttatcacactgtgatatgcatatt----tc--------------------acct-tgaatgaatatggaa B D Malayan flying lemur tgtttacattgtgatctgagtact----ta--------------------aaat-taaatgtatatggaa B D Pig tttttacattgtgatttgagtatt----ta--------------------aaat-taa-atcacatagaa B D Dolphin tctttacgttgtgatttgagtatt----ta--------------------aaat-taaatgcatgtagaa B D Cow tctgtacactgtgatttgagtatt----ta--------------------aaat-tga------gtagaa B D Sheep tctgtacactgtgatttgagtatt----ta--------------------aaat-tga------gtagaa B D Horse tctttatattgtgatttgagtatt----taaattataaatttaaatgagtaaat-taaattcatgtgaga B D Dog tctttatattgcaatctgattatt----ta--------------------aaat-taaatgcatgtggaa B D Hawaiian monk seal tccttatgttatgacttgaccgtt----ta--------------------aaat-taagtgcctgtggaa B D Elephant tttttgcattgtgatatgagtatt----ta--------------------aaat-taaatgcatgtaaaa B D Tenrec tctttgcattgtaat-----tatt----ta--------------------aaat-taaatgcatgtgaaa B D Guinea pig ====================================================================== B D Opossum ====================================================================== B D Chinese pangolin ====================================================================== B D Shrew ====================================================================== B D Hedgehog ====================================================================== GCF_003668045 ---------------------------------------------------------------------- B D Rabbit ====================================================================== B D Squirrel ====================================================================== B D Zebrafish ====================================================================== B D X. tropicalis ====================================================================== B D Chicken ====================================================================== B D Lamprey ====================================================================== Mouse catcttggga-attt-agggtacta----agtgaaaatgtttacaa---caat-------------aatc Rat catcttggga-----------actg----agtgagaatgcttgcaa---caatc------------agtc Beaver cattttgaagcattc-agaatacca----agtgaaaaatttt---------att------------aatc Pika catctgaaga-attc-agcatacag----agtgaaaatttctgtaattttaattaaaactagggaaaatg Human cattctgaagaatcc-agaatactg----agtaaaaactttcataa---ttatg------------aatc Chimp cattctgaagaatcc-agaatactg----agtaaaaactttcataa---ttatg------------aatc Bonobo cattctgaagaatcc-agaatactg----agtaaaaactttcataa---ttatg------------aatc Gorilla cattctgaagaatcc-agaatactg----agtagaaactttcataa---ttatg------------aatc Rhesus cattctgaagaatcc-agaatactg----agtaaaagctctcataa---ttatg------------aatc Marmoset cgttttgaagaattc-agaatactgagt-agtaaaaactttcataa---ttatg------------aatc Tarsier cattttgaataattc-agagtactaagtgaatgaaaatttttataa---ttata------------agtt Bushbaby cattttgaagaattc-agagtactaagtgagtgaaaacttttataa---ttatt------------aatc Tree shrew cattttgaagaattt-agagtaccg----agagaaaacttttgtaa---ttata------------atca Malayan flying lemur tattttgaagaattc-agagtactg----agtgaaaacgtgtataa---ttatt------------aacc Pig tattttgaagaattt-acagtacta--------aacattttaaaaa---ttatt------------catt Dolphin cattttgaagaattc-agagtactatgcaagtgaaaatttttaaaa---ttatt------------aact Cow cattttgaagaattc-agagtactaagtgagtgaaaactttaaaaa---ttatt------------aatc Sheep cattttgaagaattc-agagtactaagtgagtgaaaactttaaaaa---ttatt------------aatc Horse cattttgaagaattc-agagtactatatga--gagaacttttaaaa---ttatt------------aatc Dog catttt---gaattc-agagtactatgggagtgaaaacttttaaag---ttatt------------aatt Hawaiian monk seal catttttaagaattg-agagtactatgggagtgaaaatttttaagg---ttatt------------aatt Elephant tatttttaagcactcaagagtactctgtgagtataaacttttgtaa---ttatt------------aatt Tenrec tgttttcaagaattt-agagaactatatgagtgcaaagttccataa---ttgtg------------aatt Guinea pig ====================================================================== Opossum ====================================================================== Chinese pangolin ====================================================================== Shrew ====================================================================== Hedgehog ====================================================================== GCF_003668045 ---------------------------------------------------------------------- Rabbit ====================================================================== Squirrel ====================================================================== Zebrafish ====================================================================== X. tropicalis ====================================================================== Chicken ====================================================================== Lamprey ====================================================================== Mouse tcacta Rat tcacta Beaver taagaa Pika gaatta Human aaataa Chimp aaatga Bonobo aaatga Gorilla aaataa Rhesus aaataa Marmoset aaataa Tarsier gagtaa Bushbaby aaacaa Tree shrew agttaa Malayan flying lemur aaatga Pig gaaca- Dolphin gaaaag Cow caacaa Sheep caacaa Horse gaacaa Dog gtacaa Hawaiian monk seal gcacaa Elephant gaacag Tenrec gaacaa Guinea pig ====== Opossum ====== Chinese pangolin ====== Shrew ====== Hedgehog ====== GCF_003668045 ------ Rabbit ====== Squirrel ====== Zebrafish ====== X. tropicalis ====== Chicken ====== Lamprey ====== Inserts between block 16 and 17 in window B D Pika 51bp Alignment block 17 of 590 in window, 37091445 - 37091534, 90 bps B D Mouse ataca----------------g-tatttt----------------------------------------- B D Rat agaca----------------g-tgtgtt----------------------------------------- Beaver ataca----------------t-tttctt----------------------------------------- B D Rabbit atata----------------g-tatgtt----------------------------------------- B D Pika atatatttgtgggaaaaaaatg-tattttggaaaaaaaatacttggattcagggtgataagacaccaaaa B D Human atatg----------------g-tatgtt----------------------------------------- B D Chimp atatg----------------g-tatgtt----------------------------------------- B D Bonobo atatg----------------g-tatgtt----------------------------------------- B D Gorilla atatg----------------g-catgtt----------------------------------------- B D Rhesus ataca----------------g-tatgtt----------------------------------------- B D Marmoset atacg----------------g-tatgtt----------------------------------------- B D Tarsier atatg----------------a-tatgtt----------------------------------------- B D Bushbaby atata----------------g-tatgtt----------------------------------------- B D Tree shrew atatg----------------t-catgtt----------------------------------------- B D Malayan flying lemur atatg----------------g-aatgtt----------------------------------------- B D Pig ---------------------------ca----------------------------------------- B D Dolphin atata----------------g-taagta----------------------------------------- B D Cow atata----------------ggtaagta----------------------------------------- B D Sheep atata----------------gttaagta----------------------------------------- B D Horse ataca----------------g-taagta----------------------------------------- B D Dog atata----------------g-taagta----------------------------------------- B D Hawaiian monk seal ataca----------------g-taagta----------------------------------------- B D Elephant ataca----------------g-tgtata----------------------------------------- B D Tenrec ttata------------------tgaata----------------------------------------- B D Guinea pig ====================================================================== B D Opossum ====================================================================== B D Chinese pangolin ====================================================================== B D Shrew ====================================================================== B D Hedgehog ====================================================================== GCF_003668045 ---------------------------------------------------------------------- B D Squirrel ====================================================================== B D Zebrafish ====================================================================== B D X. tropicalis ====================================================================== B D Chicken ====================================================================== B D Lamprey ====================================================================== Mouse -------ccctt---------aa----------------------------------------------- Rat -------ccctt---------aa----------------------------------------------- Beaver -------acc------------------------------------------------------------ Rabbit ------cacttt---------aa----------------------------------------------- Pika aacatatatttt---------aaataaccattttcccacaaactttttcaggtaccttcatataatatat Human -------cactt---------aa----------------------------------------------- Chimp -------cactt---------aa----------------------------------------------- Bonobo -------cactt---------aa----------------------------------------------- Gorilla -------cactt---------aa----------------------------------------------- Rhesus -------cactt---------aa----------------------------------------------- Marmoset -------cactt---------aa----------------------------------------------- Tarsier -------cactt---------aa----------------------------------------------- Bushbaby -------cacat---------aa----------------------------------------------- Tree shrew -------cactt---------aa----------------------------------------------- Malayan flying lemur -------cactt---------aa----------------------------------------------- Pig -------cacttaacacactcaa----------------------------------------------- Dolphin -------tacttaactcactcaa----------------------------------------------- Cow -------cacttaatccactcaa----------------------------------------------- Sheep -------cacttaatccactcaa----------------------------------------------- Horse -------cacct---------aa----------------------------------------------- Dog -------cacgt-a-------ca----------------------------------------------- Hawaiian monk seal -------cacttaa-------aa----------------------------------------------- Elephant -------aaatc---------aa----------------------------------------------- Tenrec -------gtaaa---------ta----------------------------------------------- Guinea pig ====================================================================== Opossum ====================================================================== Chinese pangolin ====================================================================== Shrew ====================================================================== Hedgehog ====================================================================== GCF_003668045 ---------------------------------------------------------------------- Squirrel ====================================================================== Zebrafish ====================================================================== X. tropicalis ====================================================================== Chicken ====================================================================== Lamprey ====================================================================== Mouse ---------ggtga----taa--------ccatttagcaaaca--c-ttt-tagtctatatttt-atcgt Rat ---------gctga----taa--------ccatttagcaaaca--t-ctt-aagcctgtgtttt-atagc Beaver -----------tga----cat--------tcattcagcaaaca-----tt-aagcctatgtttt-gtggt Rabbit ---------cctca----tag--------tcatttagtaacct--g-tat-tagactatgtttt-acagt Pika ttactgttacctaa----gag--------tcatcagcaaatct--a-tatgcagcctatgttttgatagt Human ---------cccaa----tat--------tc----tgaaaatatat-att-aagcctgtgtttt-agggt Chimp ---------cccaa----tat--------tc----tgaaaatatat-att-aagcctgtgtttt-agggt Bonobo ---------cccaa----tat--------tc----tgaaaatatat-att-aagcctgtgtttt-agggt Gorilla ---------cccaa----tat--------tc----tgaaaatatat-att-aagcctgtgtttt-agggt Rhesus ---------cccaa----tat--------tc----tgcaaatatat-att-aagcctgtgtttt-agggt Marmoset ---------cccag----tat--------tc----tgcacatatat-ctt-aagcctacgtttt-agagt Tarsier ---------cccaa----tat--------tcatt-cagcaacatat-att-aagtctgtgtttt-aggct Bushbaby ---------cccaatatttat--------tc----aacaaacaaat-gtt-aagcctgtgtttt-acagt Tree shrew ---------ttagc----tat--------tcattcagcaaacatac-att-aaatttgtgtttt-acggt Malayan flying lemur ---------cctga----tat--------tcattcagcaaacatat-att-aagcctgtgtttt-acagt Pig ---------cacaa----tatatgtttggtcattcagcaaacat---att-gagtctgtatttt-acaat Dolphin ---------cacaa----tatatgtttggtcattcagcaaacatat-act-gagcctttatttt-acagt Cow ---------cacaa----tatatgtttggtcattcagcaaacatgtaatt-gagcctgtatttt-acaga Sheep ---------cacaa----tatatgtttggtcattcagcaaacatataatt-gagcctgtatttt-acagt Horse ---------cccag----tat--------ttattcagcaaacatac-att-gaggctgtatttt-atgat Dog ---------gctaa----tat--------tcattcaacaaatatac-act-gaacccatacttt-acagt Hawaiian monk seal ---------gctag----t------------attcaacaaacatac-act-gagcctatatttt-acaat Elephant ----------ccag----tat--------tcactcagcaaacatat-act-gaacctgtatttt-acagt Tenrec ----------cgaa----ga-----------actcagcaaacatac-ctt-gagcctgaatttt-acagt Guinea pig ====================================================================== Opossum ====================================================================== Chinese pangolin ====================================================================== Shrew ====================================================================== Hedgehog ====================================================================== GCF_003668045 ---------------------------------------------------------------------- Squirrel ====================================================================== Zebrafish ====================================================================== X. tropicalis ====================================================================== Chicken ====================================================================== Lamprey ====================================================================== Mouse a---aacttttgccagatactatgctaggt Rat a---aatttttgccaggcactatgccaggc Beaver g---aatttttttcaagtactctgctaggt Rabbit g---tacttttgtcaggtactctgccgggt Pika g---aaattttgccaggtactcttctagat Human a---aacttttacctgaga--ttgctaggt Chimp a---aacttttacctgaga--ttgctaggt Bonobo a---aacttttacctgaga--ttgctaggt Gorilla a---aacttttacctgaga--ttgctaggt Rhesus a---aactttcacctgaga--ttgctaggt Marmoset a---cacttttgccagaga--ttgctgggt Tarsier aggcaaaatttgccaaaga--ttcctaggt Bushbaby g---accttttgtcagaga--ttgctaggc Tree shrew g---aacctttgccaggcaccctgataggt Malayan flying lemur g---aacttttgccaggcactctgctaggt Pig t---aacttgtgtcaggtactcttctagat Dolphin g---aacttgtgccaggaactctgctagat Cow t---aacttgtgccaggcactctgctaggt Sheep g---aacttgtgccaggcactctgctaggt Horse g---aatttgtgccaagcaccttgctaggt Dog g---aacttgtgtt-ggaactctgctagat Hawaiian monk seal g---aacttgtgcc-gacactctggtagat Elephant g---agcttgtgccaggcactgtgctaggt Tenrec g---aacttgtgcagggtattttgctcggc Guinea pig ============================== Opossum ============================== Chinese pangolin ============================== Shrew ============================== Hedgehog ============================== GCF_003668045 ------------------------------ Squirrel ============================== Zebrafish ============================== X. tropicalis ============================== Chicken ============================== Lamprey ============================== Inserts between block 17 and 18 in window B D Pig 12bp B D Dolphin 9bp B D Cow 394bp B D Sheep 384bp B D Horse 9bp B D Dog 9bp B D Hawaiian monk seal 9bp Alignment block 18 of 590 in window, 37091535 - 37091540, 6 bps B D Mouse tactag B D Rat tatgag Beaver tacttg B D Rabbit gactga B D Pika gtctga B D Human gattga B D Chimp gattga B D Bonobo gattga B D Gorilla gattga B D Rhesus gattga B D Marmoset gattga B D Tarsier gattga B D Bushbaby gactag B D Tree shrew gattag B D Malayan flying lemur gattga B D Pig tgcagg B D Dolphin tgcagg B D Horse tagagg B D Dog aactgg B D Hawaiian monk seal tgccgg B D Elephant gattga B D Tenrec aattaa B D Guinea pig ====== B D Sheep ====== B D Opossum ====== B D Chinese pangolin ====== B D Shrew ====== B D Cow ====== B D Hedgehog ====== GCF_003668045 ------ B D Squirrel ====== B D Zebrafish ====== B D X. tropicalis ====== B D Chicken ====== B D Lamprey ====== Inserts between block 18 and 19 in window Beaver 1bp B D Tree shrew 2113bp Alignment block 19 of 590 in window, 37091541 - 37091593, 53 bps B D Mouse tgtgaacagat------gtaatgc-aggtctt---------------------------------a-cat B D Rat tatgaacagatg--tgagtaatgcaaggtttc---------------------------------a-cat Beaver taggagaggatgcataaataagataaaatctt---------------------------------a-tat B D Rabbit ggagagcaggca--tgaataaagcaaggtctt---------------------------------a-tgt B D Pika ggagagcaggca--tgaataaggcaaggtctt---------------------------------a-ttt B D Human ggggagcaggca--tgaataagacaaggtctt---------------------------------a-tgt B D Chimp ggggagcaggca--tgaataagacaaggtctt---------------------------------a-tgt B D Bonobo ggggagcaggca--tgaataagacaaggtctt---------------------------------a-tgt B D Gorilla ggggagcaggca--tgaataagacaaggtctt---------------------------------a-tgt B D Rhesus ggggaacaggca--tgaataagacaaggtctt---------------------------------a-tgt B D Marmoset gtggagcaggca--tgaattcgacaaggtctt---------------------------------a-tgt B D Tarsier ggggagcaggca--tgaataagacaaggtctt---------------------------------a-ttt B D Bushbaby ggggagcaggca--tgagtaaggcagagtctt---------------------------------attgt B D Malayan flying lemur ggggagca-gca--tgaataaggcaaagtctctgtagacaaataagtgacagtgcaggatgataaa-tgt B D Pig ----------ca--tgaataattca--gtctt---------------------------------a-tg- B D Dolphin ----------ca--tgaataagggaaggtctt---------------------------------a-tt- B D Horse ----------ca--tgaataaggcaaagtctt---------------------------------a-tga B D Dog ----------cc--tgaataaggaagggtctt---------------------------------a-caa B D Hawaiian monk seal ----------ca--tgaataagacaaggtctc---------------------------------a-ca- B D Elephant ggggaacaagca--tgaataaggtgaggtttt---------------------------------a-tgt B D Tenrec ggagaagcagca--taaatatcataaggtctt---------------------------------a-cgt B D Guinea pig ====================================================================== B D Sheep ====================================================================== B D Opossum ====================================================================== B D Chinese pangolin ====================================================================== B D Shrew ====================================================================== B D Cow ====================================================================== B D Hedgehog ====================================================================== GCF_003668045 ---------------------------------------------------------------------- B D Squirrel ====================================================================== B D Tree shrew ====================================================================== B D Zebrafish ====================================================================== B D X. tropicalis ====================================================================== B D Chicken ====================================================================== B D Lamprey ====================================================================== Mouse --------------------------gtgaaca------------------------------------- Rat --------------------------gtggaca------------------------------------- Beaver --------------------------gtagacaactgacagtgcaggatgattatggcacaagagaagtg Rabbit --------------------------gtagaca------------------------------------- Pika --------------------------ctagaca------------------------------------- Human --------------------------gtagaca------------------------------------- Chimp --------------------------gtagaca------------------------------------- Bonobo --------------------------gtagaca------------------------------------- Gorilla --------------------------gtagaca------------------------------------- Rhesus --------------------------gtagaca------------------------------------- Marmoset --------------------------gtagaca------------------------------------- Tarsier --------------------------gtagacg------------------------------------- Bushbaby --------------------------gtagaca------------------------------------- Malayan flying lemur tataatggaagttaacataaagagtaggaaaca------------------------------------- Pig ---------------------------------------------------------------------- Dolphin ---------------------------------------------------------------------- Horse --------------------------gtagaca------------------------------------- Dog --------------------------gtagaca------------------------------------- Hawaiian monk seal ---------------------------------------------------------------------- Elephant --------------------------gtag---------------------------------------- Tenrec --------------------------gtagaaa------------------------------------- Guinea pig ====================================================================== Sheep ====================================================================== Opossum ====================================================================== Chinese pangolin ====================================================================== Shrew ====================================================================== Cow ====================================================================== Hedgehog ====================================================================== GCF_003668045 ---------------------------------------------------------------------- Squirrel ====================================================================== Tree shrew ====================================================================== Zebrafish ====================================================================== X. tropicalis ====================================================================== Chicken ====================================================================== Lamprey ====================================================================== Mouse ---------------------------------------------------------------------- Rat ---------------------------------------------------------------------- Beaver tctataaaaatgaaga-------------aaccatgacttctgtattttgtgggagatcaga-------- Rabbit ---------------a-------------ataaatgacaatactatcatgggagtttatata-------- Pika ---------------a-------------ataaatagctttgctataatggggacttttgtaaagg---- Human ---------------a-------------ataaat----------------------------------- Chimp ---------------a-------------ataaat----------------------------------- Bonobo ---------------a-------------ataaat----------------------------------- Gorilla ---------------a-------------ataaat----------------------------------- Rhesus ---------------a-------------atgaat----------------------------------- Marmoset ---------------a-------------ataaat----------------------------------- Tarsier ---------------a-------------atgaat----------------------------------- Bushbaby ---------------a-------------atgagt----------------gcaagattataaatgaaat Malayan flying lemur ---------------atacattcttcctcatatag----------------------------------- Pig ---------------------------------------------------------------------- Dolphin ---------------------------------------------------------------------- Horse ---------------a-------------ataaat----------------------------------- Dog ---------------a-------------atg-------------------------------------- Hawaiian monk seal ---------------------------------------------------------------------- Elephant -----------------------------atgata----------------------------------- Tenrec ---------------a-------------atggtt----------------------------------- Guinea pig ====================================================================== Sheep ====================================================================== Opossum ====================================================================== Chinese pangolin ====================================================================== Shrew ====================================================================== Cow ====================================================================== Hedgehog ====================================================================== GCF_003668045 ---------------------------------------------------------------------- Squirrel ====================================================================== Tree shrew ====================================================================== Zebrafish ====================================================================== X. tropicalis ====================================================================== Chicken ====================================================================== Lamprey ====================================================================== Mouse ----------------aa--------------------------------------------aat----- Rat ----------------aa--------------------------------------------aat----- Beaver -gaaggttttgccaagaa--------------------------------------------aatgatat Rabbit -aaaggggat------ga--------------------------------------------aac----- Pika -g-----gac------aa--------------------------------------------aac----- Human -gag---tcc------ag--------------------------------------------gat----- Chimp -gag---tcc------ag--------------------------------------------gat----- Bonobo -gag---tcc------ag--------------------------------------------gat----- Gorilla -aag---tcc------ag--------------------------------------------gat----- Rhesus -gag---tcc------ag--------------------------------------------gat----- Marmoset -aag---tcc------ag--------------------------------------------gat----- Tarsier -aaacactct------agcaaagctttctttaaagaggagga--------------------aat----- Bushbaby ggag---ttt------ta--------------------------------------------tat----- Malayan flying lemur -gag------------at--------------------------------------------aag----- Pig --------------------------------------------------------------agt----- Dolphin --------------------------------------------------------------agt----- Horse -gacagtgca------ag--------gtgataaatgctataatgaaggtttatataaagaagagg----- Dog -------------------------------------------------------acagtgcagt----- Hawaiian monk seal --------------------------------------------------------------agt----- Elephant -a-----tac------ag--------------------------------------------tat----- Tenrec -a-----tgc------ag--------------------------------------------tat----- Guinea pig ====================================================================== Sheep ====================================================================== Opossum ====================================================================== Chinese pangolin ====================================================================== Shrew ====================================================================== Cow ====================================================================== Hedgehog ====================================================================== GCF_003668045 ---------------------------------------------------------------------- Squirrel ====================================================================== Tree shrew ====================================================================== Zebrafish ====================================================================== X. tropicalis ====================================================================== Chicken ====================================================================== Lamprey ====================================================================== Mouse ---------------a--ataa-----------c-acatat Rat ---------------a--ataa-----------taacacgt Beaver atgggccacagtagaa--ataa-----------caaaaaat Rabbit ---------------a--ataaattctatct--ttatatat Pika ---------------a--ataaattctgtctcattatacat Human ---------------a--ataa-------------atgcta Chimp ---------------a--ataa-------------atgcta Bonobo ---------------a--ataa-------------atgcta Gorilla ---------------a--ataa-------------atgcta Rhesus ---------------a--atga-------------atgcta Marmoset ---------------a--ataa-------------atgcta Tarsier ---------------a--ataa-------------attctg Bushbaby ---------------a--aaga-------------g----- Malayan flying lemur ---------------a--gaaa-------------gcttca Pig ---------------a-aacaa-------------at---- Dolphin ---------------a-gacaa-------------at---- Horse ---------------a-aacaa-------------at---- Dog ---------------gtgatta-------------at---- Hawaiian monk seal ---------------a-gacaa-------------at---- Elephant ---------------g--atat-------------atgc-- Tenrec ---------------a--ataa-------------atgt-- Guinea pig ========================================= Sheep ========================================= Opossum ========================================= Chinese pangolin ========================================= Shrew ========================================= Cow ========================================= Hedgehog ========================================= GCF_003668045 ----------------------------------------- Squirrel ========================================= Tree shrew ========================================= Zebrafish ========================================= X. tropicalis ========================================= Chicken ========================================= Lamprey ========================================= Inserts between block 19 and 20 in window B D Pig 130bp B D Dolphin 120bp B D Horse 67bp B D Dog 102bp B D Hawaiian monk seal 127bp Alignment block 20 of 590 in window, 37091594 - 37091661, 68 bps B D Mouse t-------------------------------------------------g------------------- B D Rat t-------------------------------------------------c------------------- Beaver t-------------------------------------------------ccaaga--ag---------- B D Rabbit t-------------------------------------------------agaaaa--ggcttc-acaag B D Pika c-------------------------------------------------agaggc--ggcttc-atgag B D Human t-------------------------------------------------aatgga--gctttctacaaa B D Chimp t-------------------------------------------------aatgga--gctttctacaaa B D Bonobo t-------------------------------------------------aatgga--gctttctacaaa B D Gorilla t-------------------------------------------------aatgga--gctttctacaaa B D Rhesus t----------------aatggagctttatataaagaggaggaaacaataaattct--gtcttgtatgag B D Marmoset t-------------------------------------------------aatgga--gctttatataaa B D Tarsier tcttatatgagagatctgagaaagcatcac--------------------agagga-----------aat B D Bushbaby --------------------------------------------------ga---------------aga B D Malayan flying lemur c-------------------------------------------------aaagaa-----------aat B D Pig ---------------------------------------------------------------------- B D Dolphin ---------------------------------------------------------------------- B D Cow ---------------------------------------------------------------------- B D Sheep ---------------------------------------------------------------------- B D Horse ---------------------------------------------------------------------- B D Dog ---------------------------------------------------------------------- B D Hawaiian monk seal ---------------------------------------------------------------------- B D Elephant -----------------------------------------------tgtaataga--ggtttatataaa B D Tenrec -----------------------------------------------aacaattgatggggttataaaaa B D Guinea pig ====================================================================== B D Opossum ====================================================================== B D Chinese pangolin ====================================================================== B D Shrew ====================================================================== B D Hedgehog ====================================================================== GCF_003668045 ---------------------------------------------------------------------- B D Squirrel ====================================================================== B D Tree shrew ====================================================================== B D Zebrafish ====================================================================== B D X. tropicalis ====================================================================== B D Chicken ====================================================================== B D Lamprey ====================================================================== Mouse ---------------------------------------------------------------------- Rat ---------------------------------------------------------------------- Beaver ---------------------------------------------------------------------- Rabbit ta-------------------------------------------------------------------- Pika ga-------------------------------------------------------------------- Human ga-----------------gaaggaaacaataaattctgtcttgtatgagaaatcagaaaaggcttcaca Chimp ga-----------------gaaggaaacaataaattctgtcttgtatgagaaatcagaaaaggcttcaca Bonobo ga-----------------gaaggaaacaataaattctgtcttgtatgagaaatcagaaaaggcttcaca Gorilla ga-----------------gaaggaaacaataaattctgtcttgtatgagaaatcagaaaaggcttcaca Rhesus aaatcagaaaaggcttcacataggaaatgtt--------------------------------------- Marmoset ga----ggaa---------gaaacaa----taaattctgtcttgtatgagaaatcagaaaaggctagaca Tarsier ga-----------------taa------------------------------------------------ Bushbaby aa----------------------------caaactatgttttatatgggagatcagagaaagcttcata Malayan flying lemur ta-------------------------------------------------------------------- Pig ---------------------------------------------------------------------- Dolphin ---------------------------------------------------------------------- Cow ---------------------------------------------------------------------- Sheep ---------------------------------------------------------------------- Horse ---------------------------------------------------------------------- Dog ---------------------------------------------------------------------- Hawaiian monk seal ---------------------------------------------------------------------- Elephant ga-----------------ggaggaaatgaaag---ccatgtcatgtgggagactgaagaaagcttcaca Tenrec ga-----------------ggaggaaataataa-----atgccat------------------ctccgtg Guinea pig ====================================================================== Opossum ====================================================================== Chinese pangolin ====================================================================== Shrew ====================================================================== Hedgehog ====================================================================== GCF_003668045 ---------------------------------------------------------------------- Squirrel ====================================================================== Tree shrew ====================================================================== Zebrafish ====================================================================== X. tropicalis ====================================================================== Chicken ====================================================================== Lamprey ====================================================================== Mouse -----------------------------atgtcaggaa------------aatacccttgaaagtagca Rat -----------------------------atttcagaaa------------aatatccttgaaagtagca Beaver ----------------------------aatttcttgaa----------gtaatattcttaaagataaca Rabbit -----aacggtgtttggacc-------agatcttgaaaattaagt---aggaatattcttgaaggtagca Pika -----aatgatgtttggatc-------agatattggaaattcagt---agaaatattcttaaagataaca Human taggaaatgttatttggccc-------acattttgaaaaatgagt---aggaatattcttggaggtagca Chimp taggaaatgttatttggccc-------atattttgaaaaatgagt---aggaatattcttggaggtagca Bonobo taggaaatgttatttggccc-------atattttgaaaaatgagt---aggaatattcttggaggtagca Gorilla taggaaatgttatttggccc-------acattttgaaaaatgagt---aggaatattcttggaggtagca Rhesus -----------atttggctc-------acattttgaaaaatgagt---agaaatattcttggaggtagca Marmoset taggaaatgttattcggtga-------agattttgaaaaatgagt---aggaatattcttggaggtagca Tarsier -------------ttgggcc-------agattttgaaaatagagt---aggaatatttttagaggtagca Bushbaby aatgaaataatatttgggcc-------agatcttacaaa-----t---aggaatatttttggaagtagca Malayan flying lemur ----------tatttgggcc-------agatcttgaaaattgagt---aggaatattcttagaggtaaca Pig ---------------------------------------ttatgt---aggaatattcttggctgtagca Dolphin ---------------------------------------ttatgt---aggaatatccttggctatagca Cow ---------------------------------------ttatgt---aggaatattcttggctatggca Sheep ---------------------------------------ttatgt---aggaatattcttggctatggaa Horse ---------------------------------------tcatgt---aggaatattcttggctatagca Dog ---------------------------------------ttctgt--aaaaaaaattcttggctatagca Hawaiian monk seal ---------------------------------------ttatgtaaaaaaaaaattcttagctatag-- Elephant gaggaaa-------tgatatttgagctagatcttgaaaactgagt---aaaaatattcttgg-------- Tenrec a--------------gagattagaga-aggcttcaaaaaggaaat---gataattaggttag-------- Guinea pig ====================================================================== Opossum ====================================================================== Chinese pangolin ====================================================================== Shrew ====================================================================== Hedgehog ====================================================================== GCF_003668045 ---------------------------------------------------------------------- Squirrel ====================================================================== Tree shrew ====================================================================== Zebrafish ====================================================================== X. tropicalis ====================================================================== Chicken ====================================================================== Lamprey ====================================================================== Mouse ac-atgatatttcgaat----------cagc-ggt-att------------gaaaagggata Rat ac-atgatattttgtatttggaatca-taga-ggt-ctc-----------aaaaaaggaatg Beaver ac-atgatattccttgt-------ca-ttaa-agc-atc-------------aaaaacaatg Rabbit ac-ataatattccatga-------caccatg-agc-atc----------------actcatg Pika ac-atagaatcccatga-------ca----g-aacaatc----------------accagtg Human ac-atggtattcaatgg-------ca-caga-agc-atc-------------aaaatgtatg Chimp ac-atggtattcaatgg-------ca-caga-agc-atc-------------aaaatgtatg Bonobo ac-atggtattcaatgg-------ca-caga-agc-atc-------------aaaatgtatg Gorilla ac-atggtattcaatgg-------ca-caga-agc-atc-------------aaaatgtatg Rhesus ac-atggtattcaatgg-------ca-caga-agc-atc-------------aaaatgtatg Marmoset gc-atggtattcagtgg-------ca-cag--agc-atc-------------aaaatgtatg Tarsier gc-atggtattcaatgg-------ca-taaa-agc-atc-------------aaaaagtatg Bushbaby ac-atggcatttaatgg-------ca-caga-agc-atc-------------aaa--ttatg Malayan flying lemur actatggtatttaatgg-------ca-caga-agc-atc-------------aaaaagtatg Pig ac-atggtatttaatgc-------ta-taga-agc-atc-------------a-aaaacatg Dolphin ac-atggtatttaatgg-------ta-caaa-agt-gtc-------------agaaagtatg Cow ac-atggtatttaatgg-------t---cag-agc-atc-------------agaaagtatg Sheep ac-atggtatttaatgg-------t---cag-agc-atc-------------agaaagtatg Horse ac-atggtatttaatgg-------ca-caga-agc-atc---------------aaagtgtg Dog ac-atggtatttaatga-------ta-caga-agc-atc-------------aaaaagtatg Hawaiian monk seal -c-atggtctttaatgg-------ta-cagagagc-atc-------------agaaagtatg Elephant -c-atggtgtt-cgtgg-------ca-caga-agt-atc-------------agaaagtatg Tenrec ---accttgaa-aatgg-------ag-taaa-aat-attctcggatgtagcaacataacatg Guinea pig ============================================================== Opossum ============================================================== Chinese pangolin ============================================================== Shrew ============================================================== Hedgehog ============================================================== GCF_003668045 -------------------------------------------------------------- Squirrel ============================================================== Tree shrew ============================================================== Zebrafish ============================================================== X. tropicalis ============================================================== Chicken ============================================================== Lamprey ============================================================== Inserts between block 20 and 21 in window B D Rabbit 2bp B D Pika 2bp Alignment block 21 of 590 in window, 37091662 - 37091797, 136 bps B D Mouse tctttggagc--a-tctt-tgg-ctactatggctgaatcatgaggtttaat------------------- B D Rat tgtttggagc--agtctt-tgg-ctgccatggctgaaacatgaggtttaac------------------- Beaver cttttggagc--acactt-tggtttgctgtgactgatgcat-agatataac------------------- B D Guinea pig tttttagagt--a--ctc-tggtttgctgtaactgaagtataaga--taac------------------- B D Rabbit cttttggatc--atacct-tgattaactgtgactgaagcttagggtataac------------------- B D Pika cttttggat------ctt-tggttaaccatgactgaagcattgggaataac------------------- B D Human cttctggatc--atactt-tgatttgctgtggctgaagcacagggtataag------------------- B D Chimp cttctggatc--atactt-tgatttgctgtggctgaagcac-gggtataag------------------- B D Bonobo cttctggatc--atactt-tgatttgctgtggctgaagcacagggtataagtgaacatttaattggttgg B D Gorilla cttctggatc--atactt-tgatttgctgtggctgaagcacagggtataag------------------- B D Rhesus cttctggatcatatactt-tgatttgctgtggctaaagcatagggtattag------------------- B D Marmoset cttctggatc--atagtt-tgatttgctctggctgaagcatagggtataag------------------- B D Tarsier cttttggttc--atac-t-tggttcactgtggctgaagcttaggaaatatc------------------- B D Bushbaby cttttgggtc--atactt-catttcactgtggctaaagcatagggtataac------------------- B D Malayan flying lemur cttttggatt--atactt-tgattcactatggctgaagcatagggtataac------------------- B D Pig attttggatc--atactt-tgattcactgaggctgaaacct-aggtataac------------------- B D Dolphin cttttggagc--atactt-tgattcactgaagctgaagcat-aggtataac------------------- B D Cow cttttggatc--atactt-tgattcactg-agttaaagcat-aggtgtaac------------------- B D Sheep cttttggatc--atactt-taattcactg-agttaaaccat-aggtgtaac------------------- B D Horse cttttggttc--atactg-tagtttactgaggctgaagcat-agggataac------------------- B D Dog ctgtaggatc--ataact-tggttcactcaaac-aaagcat-aggtataac------------------- B D Hawaiian monk seal cttttggatc--atactt-cggttcactgaagc-aaagcat-agttataac------------------- B D Elephant cttttaaaac--atacttttggcttattctggctgaagtgt-gggtataac------------------- B D Tenrec cccttaaaat--atacttctggttccttatggctgaa-------gcatcat------------------- B D Opossum ====================================================================== B D Chinese pangolin ====================================================================== B D Shrew ====================================================================== B D Hedgehog ====================================================================== GCF_003668045 ---------------------------------------------------------------------- B D Squirrel ====================================================================== B D Tree shrew ====================================================================== B D Zebrafish ====================================================================== B D X. tropicalis ====================================================================== B D Chicken ====================================================================== B D Lamprey ====================================================================== Mouse --------------caaaca--------gtt------------------gtaca------------gagt Rat --------------caaacac----tttatt------------------gtaca------------agat Beaver --------------tgaacatttaattcatt------------------gtaca------------aagt Guinea pig --------------tgaacatttaattggtt------------------gtaca------------aagt Rabbit --------------aggacatgtaattggtt------------------gtaca-----------caagt Pika --------------tagacattcagttggtt------------------gt--a-----------taaat Human --------------tgaacatttaattggttggagccaattaaatgtt-gaacatttaattggtttaagt Chimp --------------tgaacatttaattggttggagccaattaaatgtt-gaacatttaattggtttaagt Bonobo agccaattaaatgttgaacatttaattggttggagccaattaaatgtt-gaacatttaattggtttaagt Gorilla --------------tgaacatttaattggttggagccaattaaatgttggaacatttaattggtttaagt Rhesus --------------tgaacatttaattggtt------------------gtaca------------aagt Marmoset --------------tgaacatttaattggtt------------------gtaca------------aagt Tarsier --------------tgaacatgtaactggtt------------------gtacg------------aagt Bushbaby --------------tgaacatttaattggtt------------------gtaca------------aagt Malayan flying lemur -------------------gtttagctggtt------------------ttaca------------aagt Pig --------------tgaacatttagttagtt------------------gtaca------------aagt Dolphin --------------tgaacatttagttagtt------------------gtaca------------cagt Cow --------------tgaacactgagttagtt------------------gtaca------------aagt Sheep --------------tgaacactgagttagtt------------------gtaca------------aagt Horse --------------tgaacatttaattggtt------------------gtaca------------cagc Dog --------------tgaacatttaactggtt------------------gtaca------------gttc Hawaiian monk seal --------------tgaacatttaactggtt------------------gtata------------gtta Elephant --------------tcaacttttaattgctt------------------ctaca------------aagt Tenrec --------------tagatgtctcgctggtt------------------gtact------------gagt Opossum ====================================================================== Chinese pangolin ====================================================================== Shrew ====================================================================== Hedgehog ====================================================================== GCF_003668045 ---------------------------------------------------------------------- Squirrel ====================================================================== Tree shrew ====================================================================== Zebrafish ====================================================================== X. tropicalis ====================================================================== Chicken ====================================================================== Lamprey ====================================================================== Mouse agatggggcaagagggaga-agtcc-tgg-ctaaaggta--aaggtgatgaaatttaccagtagctgact Rat -gatgggacaagagggaga-agtcc-tggactaatggta--tagatgatgaactagaccagcagcagata Beaver agttaggctcagaaggagagaggac-tgg-gtagaggaa--aaggttacaaaatagactaggaccggatt Guinea pig agttgagactagagggagagaagac-tgg-ctggaggaa--aagctgat-aaataaatcaagaatagatt Rabbit aggtgg---------------------gg-ctgttggaa--aagctgaagaagtcgatcaggaccagcct Pika aggtgg---------------------gg-ctgaaggaa--aaactgataaaatagaataggaccaggct Human ggatggagccagaaatagag------agg-ctagaggta--aagctgataaaat-----aggacctgatt Chimp ggatggagccagaaatagtg------agg-ctagaggta--aagctgataaaat-----aggacctgatt Bonobo ggatggagccagaaatagtg------agg-ctagaggta--aagctgataaaat-----aggacctgatt Gorilla ggatggagccagaaatagag------agg-ctagaggta--aagctgataaaat-----aggacctgatt Rhesus agatggagccagaaagaggg------agg-ctagaggca--aagctgataaaat-----aggacctgatt Marmoset ggatggagatagaaat----------agg-ctagaggtaatatgttgataaaac-----aggacgcgatt Tarsier aggtggagccagaaggagagaggaa-agg-atgaaggta--aagc---tagatg-----aggacctaatt Bushbaby aggtatgatcagaaggagaaaggaa-tgg-ttagaggta--aagctgataagatagatcaggatcatatt Malayan flying lemur aggcagggccagagggagagaagaa-tga-ctagagata--aagctgataaaatagatcaggaccagatt Pig aaggggg----------gaggggagttcg-ctagaggta--aaactggtaaaacagaccaggacatgata Dolphin aggtgaggccagagggagagaggagttgg-ctagaggta--aagctggtaaaatagcccaggacatgatt Cow agatgggttcagagacagggaggacttga-ctagaggta--aagctgataaaatagcccaggacatgact Sheep agatgggtccagagacagggaggacttga-ctagaggta--gagctgataaaatagcccaggacatgact Horse agttggggccagagggagagaggagttgt-ctagaggta--aagctgataaaatagatcaggaccagatt Dog agt---gtcccaagggagagaggaattgc-ctagaggta--aagctggtaaaacagacaaggactaaatt Hawaiian monk seal aat---gtcccaagggagagaggaattgc-ttagaggga--aagctggtaaaacaccccaggactagatt Elephant gggtcaggacagagggaaagaggag-ttg-ctagaggta--aagctggtaaaatagatcaggacaagatt Tenrec cggtcgggatggaggaaaagagttg-ctg-ctgga-gtg--aagctggcgaagtagatcgggaccagagt Opossum ====================================================================== Chinese pangolin ====================================================================== Shrew ====================================================================== Hedgehog ====================================================================== GCF_003668045 ---------------------------------------------------------------------- Squirrel ====================================================================== Tree shrew ====================================================================== Zebrafish ====================================================================== X. tropicalis ====================================================================== Chicken ====================================================================== Lamprey ====================================================================== Mouse gtgg----------agt--- Rat atgg----------act--- Beaver atag----------a----- Guinea pig gtgg----------agt--- Rabbit gtag----------agg--- Pika gtgg----------atg--- Human gtgg----------agg--- Chimp gtgg----------agg--- Bonobo gtgg----------agg--- Gorilla gtgg----------agg--- Rhesus gtgt----------aag--- Marmoset atgg----------agg--- Tarsier atta----------aga--- Bushbaby gtgg----------tgg--- Malayan flying lemur gtgg----------aag--- Pig gtgggggggaggcagag--- Dolphin g-gggtagg-----ggg--- Cow gtggggtgg-----gga--- Sheep gtggggtgg-----ggg--- Horse gtgg----------gga--- Dog gttg----------gga--- Hawaiian monk seal gatg----------gga--- Elephant gtgg----------gagact Tenrec gtgg------------gtct Opossum ==================== Chinese pangolin ==================== Shrew ==================== Hedgehog ==================== GCF_003668045 -------------------- Squirrel ==================== Tree shrew ==================== Zebrafish ==================== X. tropicalis ==================== Chicken ==================== Lamprey ==================== Inserts between block 21 and 22 in window B D Guinea pig 620bp B D Rabbit 3bp B D Pika 3bp B D Human 9bp B D Chimp 9bp B D Bonobo 9bp B D Gorilla 9bp B D Rhesus 9bp B D Marmoset 9bp B D Tarsier 4bp B D Bushbaby 2bp B D Malayan flying lemur 4bp B D Pig 4bp B D Dolphin 4bp B D Cow 4bp B D Sheep 4bp B D Horse 4bp B D Dog 4bp B D Hawaiian monk seal 4bp Alignment block 22 of 590 in window, 37091798 - 37091852, 55 bps B D Mouse cagatt---gcactgag------------------ggat--------------------cag----atat B D Rat cggatt---gaattga-------------------ggat--------------------cag----atat Beaver tggattcacacaccagg--caa------------agaat--------------------gag----attc B D Rabbit ------------ttaagtgcaagtg------tgtagaatc-------------------cag----gttc B D Pika ------------ttgagttcaaatc------tacagaatc-------------------cag----g-tc B D Human -------------------catatgccatgataaagaat--------------------tgg----gttc B D Chimp -------------------catatgccatgctaaagaat--------------------tgg----gttc B D Bonobo -------------------catatgccatgctaaagaat--------------------tgg----gttc B D Gorilla -------------------catatgccatgctaaagaat--------------------tgg----gttc B D Rhesus -------------------catatgccaagctaaagaat--------------------tgg----gttc B D Marmoset -------------------catatgc-----tgaagaat--------------------cgg----gttc B D Tarsier -------------------catatgctaggctaaagaat--------------------tgg----gttc B D Bushbaby ---------------------------------------------------------------------c B D Malayan flying lemur -------------------catatgccaggctaaagcat--------------------cag----tttc B D Pig -------------------cttatgccaggataaacaat--------------------aga----gttc B D Dolphin -------------------catatgccaggctaaagaac--------------------agg----gttc B D Cow -------------------cata--ccatgctaaaaaat--------------------ggg----gttc B D Sheep -------------------cata--ccatgctaaaaaat--------------------ggg----gttc B D Horse -------------------tgtatgccaagctaaagagc---------------------------gttc B D Dog -------------------tgtatgccaggctaaagaac--------------------aaggattattt B D Hawaiian monk seal -------------------catatgccaagctaaagaaa--------------------agg----attc B D Elephant -------------------tgtatcccaagctaaagaat--------------------tgg----attc B D Tenrec -------------------tgtatcccaagatcgagaagtagatgcgacagcatcctcatgg----gttc B D Guinea pig ====================================================================== B D Opossum ====================================================================== B D Chinese pangolin ====================================================================== B D Shrew ====================================================================== B D Hedgehog ====================================================================== GCF_003668045 ---------------------------------------------------------------------- B D Squirrel ====================================================================== B D Tree shrew ====================================================================== B D Zebrafish ====================================================================== B D X. tropicalis ====================================================================== B D Chicken ====================================================================== B D Lamprey ====================================================================== Mouse ttatt----ctttaggtg----------------------------gtgagaagccattaaa Rat ttatt----cctcaggtg----------------------------gtgagaagccattagt Beaver tggtc----cttcagaaa----------------------------atcagaagccattaga Rabbit ttatc----ctttggctg----------------------------atgacaaaccattaga Pika tgctc----ctttgatga----------------------------atgagaaaccttttga Human tgatt----atttcggca----------------------------ctgagaagccattaga Chimp tgatt----atttcggca----------------------------ctgagaagccattaga Bonobo tgatt----atttcggca----------------------------ctgagaagccattaga Gorilla tgatt----atttcggca----------------------------ctgagaagccattaga Rhesus tgatt----atttcggcataagcagaattgttgtgttaaaagccattagagaagccattaca Marmoset tgatc----ttttaggca----------------------------gtgagaagccattaga Tarsier tgatc----ctttgggca----------------------------atgagaagccattaga Bushbaby tcaat----atgccagac----------------------------aaaagaatc------a Malayan flying lemur tggtc----ctttggaca----------------------------gtgagaagctgctaga Pig tgatc----ctttgggca----------------------------gttagaagccatgaga Dolphin tgatc----ctttgggcg----------------------------gggagaagcccttaga Cow tgatc----ctttgggca----------------------------aggagaagctatcagc Sheep tgg--------aggggca----------------------------aggagaagccattagc Horse tgatc----ctttgggca----------------------------gtgagaagctgttaga Dog tgatc----ctttgggcg----------------------------atgaaaagccatagga Hawaiian monk seal tgatc----ctttgggca----------------------------gtgaaaagccattaga Elephant tgatc----ctttggata----------------------------atgagaagccattaca Tenrec tgctcatcgctttgggca----------------------------cggggaagccattcga Guinea pig ============================================================== Opossum ============================================================== Chinese pangolin ============================================================== Shrew ============================================================== Hedgehog ============================================================== GCF_003668045 -------------------------------------------------------------- Squirrel ============================================================== Tree shrew ============================================================== Zebrafish ============================================================== X. tropicalis ============================================================== Chicken ============================================================== Lamprey ============================================================== Inserts between block 22 and 23 in window B D Pig 4bp B D Dolphin 154bp B D Cow 152bp B D Sheep 152bp Alignment block 23 of 590 in window, 37091853 - 37091854, 2 bps B D Mouse gg B D Rat tg Beaver gg B D Rabbit ta B D Pika ga B D Human ag B D Chimp ag B D Bonobo ag B D Gorilla ag B D Rhesus gg B D Marmoset gg B D Tarsier gg B D Bushbaby gg B D Malayan flying lemur gg B D Horse gg B D Dog gg B D Hawaiian monk seal gg B D Elephant gg B D Tenrec ag B D Guinea pig == B D Sheep == B D Opossum == B D Pig == B D Chinese pangolin == B D Shrew == B D Cow == B D Dolphin == B D Hedgehog == GCF_003668045 -- B D Squirrel == B D Tree shrew == B D Zebrafish == B D X. tropicalis == B D Chicken == B D Lamprey == Inserts between block 23 and 24 in window B D Malayan flying lemur 2bp B D Horse 50bp B D Hawaiian monk seal 172bp Alignment block 24 of 590 in window, 37091855 - 37091861, 7 bps B D Mouse --attggct B D Rat --tct--tt Beaver --ttt---t B D Rabbit --tt----- B D Pika --ttt--tt B D Human --tta--ag B D Chimp --tta--ag B D Bonobo --tta--ag B D Gorilla --tta--ag B D Rhesus --tta--ag B D Marmoset --tta--ag B D Tarsier ---aa--aa B D Bushbaby --tt----- B D Malayan flying lemur --ttt--aa B D Pig --tt----- B D Dolphin --tt----- B D Cow --tt----- B D Sheep --tt----- B D Horse --tt----- B D Dog --tt----- B D Hawaiian monk seal --tt----- B D Elephant tttt----- B D Tenrec tttt----- B D Guinea pig ========= B D Opossum ========= B D Chinese pangolin ========= B D Shrew ========= B D Hedgehog ========= GCF_003668045 --------- B D Squirrel ========= B D Tree shrew ========= B D Zebrafish ========= B D X. tropicalis ========= B D Chicken ========= B D Lamprey ========= Inserts between block 24 and 25 in window B D Pig 4bp B D Dolphin 4bp B D Cow 4bp B D Sheep 4bp B D Horse 108bp B D Dog 651bp B D Hawaiian monk seal 8bp Alignment block 25 of 590 in window, 37091862 - 37091868, 7 bps B D Mouse -aaaggac--- B D Rat -aaagagt--- Beaver -aaagata--- B D Pika -aa-------- B D Human -aaa------- B D Chimp -aaa------- B D Bonobo -aaa------- B D Gorilla -aaa------- B D Rhesus -aaa------- B D Marmoset -aaa------- B D Tarsier -aaa------- B D Malayan flying lemur -gaa------- B D Pig -aaa------- B D Dolphin -aaa------- B D Cow -aaa------- B D Sheep -aaa------- B D Horse -aag------- B D Dog -aaa------- B D Hawaiian monk seal -aaa------- B D Elephant taag----aag B D Tenrec taag----atg B D Guinea pig =========== B D Opossum =========== B D Chinese pangolin =========== B D Shrew =========== B D Hedgehog =========== GCF_003668045 ----------- B D Rabbit ----------- B D Bushbaby ----------- B D Squirrel =========== B D Tree shrew =========== B D Zebrafish =========== B D X. tropicalis =========== B D Chicken =========== B D Lamprey =========== Alignment block 26 of 590 in window, 37091869 - 37091876, 8 bps B D Mouse tgggatga B D Rat tgggatga Beaver tgggatga B D Guinea pig tagaatga B D Rabbit ---aagta B D Pika --ggatga B D Human tgggttga B D Chimp tgggttga B D Bonobo tgggttga B D Gorilla tgggttga B D Rhesus tggggtga B D Marmoset cagggtga B D Tarsier tggggtga B D Bushbaby ----ctga B D Malayan flying lemur tgggatgc B D Pig tggtatga B D Dolphin aaggaaga B D Cow aggaatga B D Sheep aggaatga B D Horse gggggtga B D Dog tgagatga B D Hawaiian monk seal tgggatga B D Elephant ctgaatga B D Tenrec tgagatga B D Opossum ======== B D Chinese pangolin ======== B D Shrew ======== B D Hedgehog ======== GCF_003668045 -------- B D Squirrel ======== B D Tree shrew ======== B D Zebrafish ======== B D X. tropicalis ======== B D Chicken ======== B D Lamprey ======== Inserts between block 26 and 27 in window B D Pig 150bp Alignment block 27 of 590 in window, 37091877 - 37091955, 79 bps B D Mouse tgcttca-gattggtgcttt-----ag--agagag--tcagtagtaccgcaagccatg-----gga-gga B D Rat tgcttca-ggttggtgtttt-----agaaagaaag--ttggtagtaacacaaaaaata-----ggaggga Beaver tgcctca-tatt-gtgtttt-----ac--aaaaag--ttgatgatagcatgacagatg-----tgagaaa B D Guinea pig tactcta-tattgatatttt-----ag--aaagaa--tttatagtaacttgaaaggtg-----aaaggga B D Rabbit tacttca-aactggtttttt-----ag--agaga---------------taggatata-----ggagaga B D Pika tgcctca-gattttttttttttctgaa--agag----------------tagtaggtg-----gg----- B D Human tgcttca-gaatggtgtttt-----agaaagagag--ttgagggtagcctgaaagaca-----ggaaaga B D Chimp tgcttca-gaatggtgtttt-----agaaagagag--ttgagggtagcctgaaagaca-----ggaaaga B D Bonobo tgcttca-gaatggtgtttt-----agaaagagag--ttgagggtagcctgaaagaca-----ggaaaga B D Gorilla tgcttca-gaatggtgttgt-----agaaagagag--ttgagggtagcctgaaagaca-----ggaaaga B D Rhesus tgcttca-gaatggtgtttt-----agaaagagag--gtgatggtagcctgaaagata-----ggaaaga B D Marmoset tgcttca-gaaatatgtttt-----agaaagagag--ctgatggtagcatgaaagata-----ggaaag- B D Tarsier tgcttta-gaatggtgtttg-----agaaagagag--ttga----agcatgaaatatg-----ggagaga B D Bushbaby tcctt---------------------------------------------------tg-----ggcagta B D Malayan flying lemur tgcttca-gattgatgtttt-----ggaaagatag--ttgatggtagcatgaaagatg-----ggagaga B D Pig tacttca-aattggtatttt-----agaaagagaa--ttgatgattgaatgaaaaataa----agagtgg B D Dolphin tgcttca-gattgatgtttt-----aggaagggagttttgatggttgaatgaaaagaggtggtggagtgg B D Cow tccttaa-gattgatgtttt-----aggaagagag--ctgataggagaatggtaagagatggtagagtgg B D Sheep tccttaa-gattgatgtttt-----aggaagagag--ctgatgggagaatggtaagagatggtagagtgg B D Horse tgtttca-gatttgtgtttt-----ag----agag--ttgagggtagcatgaaagatg-----ggagagg B D Dog tgcttca-gattggtgtttt-----agaa--agag--tcgatggcagcatgaaaaatg-----ggag--- B D Hawaiian monk seal tgcttca-gattggtgtttt-----agaa--agag--ttgatggcagcatgaaaaatg-----ggag--- B D Elephant tgttttc-gattggtggttt-----agaaagagag--ttgatggtattatggaagatg-----ggagaga B D Tenrec tgtgttcagattggtgtttt-----ag-aggagag--ttgatggtagtgt---agatg-----agagaaa B D Opossum ====================================================================== B D Chinese pangolin ====================================================================== B D Shrew ====================================================================== B D Hedgehog ====================================================================== GCF_003668045 ---------------------------------------------------------------------- B D Squirrel ====================================================================== B D Tree shrew ====================================================================== B D Zebrafish ====================================================================== B D X. tropicalis ====================================================================== B D Chicken ====================================================================== B D Lamprey ====================================================================== Mouse ---aaagatgcttgaggatgctgtttaa Rat ---aaagatgcttga-gatgttgttcaa Beaver ---gaagatgcttgaggtggctatttaa Guinea pig ---aaagattcttagtgaggttatctta Rabbit ---aaagatgcttgagtagactgcttta Pika ---aaagatgcttgaggaggctgcatta Human ---aaagatgcttgaggaggctgctgaa Chimp ---aaagatgcttgaggaggctgctgaa Bonobo ---aaagatgcttgaggaggctgctgaa Gorilla ---aaagatgcttgaggaggctgctgaa Rhesus atgaaagatgcttgaggaggctgctgaa Marmoset ---aaagatgcttgaggagactgttgaa Tarsier ---aaaaatgcttcggaaggccgttgaa Bushbaby ---ataagtcatt--agaggttttt--- Malayan flying lemur ---aaagattctt-aggaggctgctgaa Pig ---aaagatgcttgagg---ctgttcaa Dolphin ---aaagatgcttgaggaagctgttgaa Cow ---aaagatgcttggggacactgttgaa Sheep ---aaagatg-ttggggacgctgttgaa Horse ---aaagatgcttgaggaggctgttgaa Dog -----agatgcttgcaaaggctgtt--- Hawaiian monk seal -----agatgcttgaaaagactgttgaa Elephant ---aaagatgcttgcgaaggctgttgaa Tenrec ---aaagatgtttgagaaggctgttaaa Opossum ============================ Chinese pangolin ============================ Shrew ============================ Hedgehog ============================ GCF_003668045 ---------------------------- Squirrel ============================ Tree shrew ============================ Zebrafish ============================ X. tropicalis ============================ Chicken ============================ Lamprey ============================ Inserts between block 27 and 28 in window Beaver 6bp B D Guinea pig 7bp B D Rabbit 6bp B D Pika 6bp B D Human 6bp B D Chimp 6bp B D Bonobo 6bp B D Gorilla 6bp B D Rhesus 6bp B D Marmoset 6bp B D Tarsier 6bp B D Malayan flying lemur 6bp B D Pig 6bp B D Dolphin 6bp B D Cow 6bp B D Sheep 6bp B D Horse 6bp B D Dog 5bp B D Hawaiian monk seal 6bp Alignment block 28 of 590 in window, 37091956 - 37092014, 59 bps B D Mouse ------tcagcagaagtgagtgaaaatctgatgcaacagt----------aaaaa-gagaaa-gggggga Beaver ------caagcagtagtcagtgaaggcttga----attgt----------gaaag-caaaaatgaagggg B D Guinea pig ------caagaaatattgaatgcaaacctaa----actgccag-------aaaaa-aaggaa-aaaaaaa B D Rabbit ------ccaacaataatcaatgaaggactta----attattatatt----aaaaa-aggata-aaaggga B D Pika ------tcaacaataaccaatggaggtcttc----attattataataaggaaaca-aggata-aaagaga B D Human ------catgcaatagtagatgagagcatga----actgtggcagt----aaaaaaaggaga-aaaggga B D Chimp ------catgcaatagtagatgagagcatga----actgtggcagt----aaaaaaaggaga-aaaggga B D Bonobo ------catgcaatagtagatgagagcatga----actgtggcagt----aaaaaaaggaga-aaaggga B D Gorilla ------tatgaaatagtagatgagagcatga----actgtggcagt----aaaaaaaggaga-aaaggga B D Rhesus ------catgcaatagcagatgagagcatga----actgtggcagta---aaaaaaaggaga-aaaggga B D Marmoset ------cgtgcagtagtagatgagagcctaa----ac--tggcagt----aaaaa---gaga-aaaggga B D Tarsier ------cattcaatagtagatggacac-taa----attgtgacagt----aaaaa-aggaga-aaaggga B D Bushbaby --------------------------------------------------aagaaatggggt-aaag--- B D Malayan flying lemur ------taagcaatagtggataaaggcctga----attatgacag-----gagaaaaggaga-aaaagga B D Pig ------taagcaatatgggatgaaggcctaa----attgtgacagt----taa--------g-gggggga B D Dolphin ------taagcaataggggatgagggcctga----gttgttatagg----aaaaa-aagagt-agaggga B D Cow ------taagcagtaggggatgagggcctga----attgtgacagt----aaaaa-aagagg-agagaga B D Sheep ------taagcaataggggatgagggcctga----attgtgacagt----taaaa-aagagg-agagaga B D Horse ------ttagcaatagaggatgaaggcctga----actgtgacagt----gaaaa-aggaga-agaggaa B D Dog ------caagcaatagggagtgaagccctga----actataacaat----aaaaa----aga-agaagga B D Hawaiian monk seal ------caagcaatagggagtgaaaccctaa----actgtgacaat----aaaaa----aga-agagaga B D Elephant atagaccaggcaatagaggatgaaggcctga----actgtgacagt----aaaaa--aaaca-agaggag B D Tenrec ataaatctagcaagatgaaatgtaggcttga----a--gtttcaaa----ctgga--aaaga-agaggag B D Opossum ====================================================================== B D Chinese pangolin ====================================================================== B D Rat ---------------------------------------------------------------------- B D Shrew ====================================================================== B D Hedgehog ====================================================================== GCF_003668045 ---------------------------------------------------------------------- B D Squirrel ====================================================================== B D Tree shrew ====================================================================== B D Zebrafish ====================================================================== B D X. tropicalis ====================================================================== B D Chicken ====================================================================== B D Lamprey ====================================================================== Mouse a-------cag-ctt- Beaver a-------tgt-ttt- Guinea pig a-------tag-ttt- Rabbit a-------tgg-ttt- Pika a-------tgg-ctt- Human atgaggagtgg-gtt- Chimp atgaggagtgg-gtt- Bonobo atgaggagtgg-gtt- Gorilla atgaggagtgg-gtt- Rhesus atgaggagtgg-gtt- Marmoset atgaggagtgg-gtt- Tarsier a-------tgg-att- Bushbaby cttcatattggtgtt- Malayan flying lemur a-------tgg-ctt- Pig g-------tgg-ttt- Dolphin a-------tgg-ttt- Cow a-------tgg-ttt- Sheep a-------tgg-ttt- Horse a-------tgg-ttt- Dog a-------tgg-ttt- Hawaiian monk seal a-------tgg-ttt- Elephant g-------tgg-tttc Tenrec t-------ggg-ttcc Opossum ================ Chinese pangolin ================ Rat ---------------- Shrew ================ Hedgehog ================ GCF_003668045 ---------------- Squirrel ================ Tree shrew ================ Zebrafish ================ X. tropicalis ================ Chicken ================ Lamprey ================ Inserts between block 28 and 29 in window B D Rabbit 1057bp Alignment block 29 of 590 in window, 37092015 - 37092037, 23 bps B D Mouse ca----aactgagag-aaga----aagtcctg-------------- Beaver catgagaaataagag-aatataccagcttacg-------------- B D Guinea pig cagtaaagctatgaa-aagcca--caaccatg-------------- B D Pika ---taaggcggaaat-aatg----aagtccag-------------- B D Human ---caagagagatag-aaga----gaatccat-------------- B D Chimp ---caagagagatag-aaga----gaatccat-------------- B D Bonobo ---caagagagatag-aaga----gaatccat-------------- B D Gorilla ---caagagagatag-aaga----gaatccat-------------- B D Rhesus ---gaagagagagag-aaga----gaatccat-------------- B D Marmoset ---taagagagatat-aaga----gaatccac-------------- B D Tarsier ---taagagagat---aaga----gaatctac-------------- B D Bushbaby ---ttaga--------aaga----gagccaat-------------- B D Malayan flying lemur ---caagagagacat-aaga----gaatccac-------------- B D Pig ---caagagaaatgttaaga----gtatccac-------------- B D Dolphin ---caagagaaatat---ga----gaatccac-------------- B D Cow ---caagataaatat---ga----gaatccat-------------- B D Sheep ---caagataaatat---ga----gaatccac-------------- B D Horse ---caagagaaatag-aaga----gaagtcac-------------- B D Dog ---taagagaaat------a----gaatccac-------------- B D Hawaiian monk seal ---taaaagaagt------a----gaacccac-------------- B D Elephant ----cagagagatag-aaga----gaatccaccagcttgagagaac B D Tenrec ----cagagagaaat-aaga----aaac----------------ac B D Opossum ============================================== B D Chinese pangolin ============================================== B D Rat ---------------------------------------------- B D Shrew ============================================== B D Hedgehog ============================================== GCF_003668045 ---------------------------------------------- B D Rabbit ============================================== B D Squirrel ============================================== B D Tree shrew ============================================== B D Zebrafish ============================================== B D X. tropicalis ============================================== B D Chicken ============================================== B D Lamprey ============================================== Inserts between block 29 and 30 in window B D Pika 12bp B D Human 7bp B D Chimp 7bp B D Bonobo 7bp B D Gorilla 7bp B D Rhesus 7bp B D Marmoset 7bp B D Tarsier 7bp B D Bushbaby 3bp B D Malayan flying lemur 7bp B D Pig 12bp B D Dolphin 12bp B D Cow 12bp B D Sheep 12bp B D Horse 12bp B D Dog 12bp B D Hawaiian monk seal 12bp Alignment block 30 of 590 in window, 37092038 - 37092067, 30 bps B D Mouse aag-----ttgca--caaggagcagtagaggacaaag Beaver aagacatattata--taaggaacaggtgaggagacaa B D Guinea pig aaaatgagttatg--taaggagcaatagaagagacaa B D Rabbit -----aagttatg--gaagg-gcagcagaggagataa B D Pika -----aagttatg--gaagg-gcactgaaggagaaaa B D Human agtataagttgta--ttaggggcaacagaggagacaa B D Chimp agtataagttgta--ttaggggcaacagaggagacaa B D Bonobo agtataagttgta--ttaggggcaacagaggagacaa B D Gorilla agtataagttgta--ttaggggcaacagaggagacaa B D Rhesus agtacaaattgta--ttaggggcaataaaggagacaa B D Marmoset agtaaaagttacaacttaggggcagcagaggagacaa B D Tarsier aggacaagttgta--tgtcgggtagaagaggagacaa B D Bushbaby agcataaaagatg----------------ggagaaaa B D Malayan flying lemur aggacaa---ata--taaggggcagtacaggagacaa B D Pig -----aagttgta--tgtggag----aaaggagacga B D Dolphin -----aagttgta--tgaggagcagtagaggagacag B D Cow -----aagttgta--tgagcagcaatagaggaggcaa B D Sheep -----aagttgta--tgagcagcaatagaggagacaa B D Horse -----aagttctg--tgaggagcagcagaggagacaa B D Dog -----aagttgta--taagg---tgtggaggagacaa B D Hawaiian monk seal -----aagttgtg--taagg---agtagaggagacaa B D Elephant -----aagctgtg--ggaagggcggtagagataagaa B D Tenrec -----aagct--------------------------- B D Opossum ===================================== B D Chinese pangolin ===================================== B D Rat ------------------------------------- B D Shrew ===================================== B D Hedgehog ===================================== GCF_003668045 ------------------------------------- B D Squirrel ===================================== B D Tree shrew ===================================== B D Zebrafish ===================================== B D X. tropicalis ===================================== B D Chicken ===================================== B D Lamprey ===================================== Inserts between block 30 and 31 in window B D Rabbit 1bp B D Pika 1bp B D Human 1bp B D Chimp 1bp B D Bonobo 1bp B D Gorilla 1bp B D Rhesus 1bp B D Marmoset 1bp B D Tarsier 1bp B D Bushbaby 1bp B D Malayan flying lemur 1bp B D Pig 1bp B D Dolphin 1bp B D Cow 1bp B D Sheep 1bp B D Horse 1bp B D Dog 1bp B D Hawaiian monk seal 1bp Alignment block 31 of 590 in window, 37092068 - 37092077, 10 bps B D Mouse ggtggctgtg-- GCF_003668045 ggtggctttg-- Beaver gattacctta-- B D Guinea pig ggttcctgaa-- B D Rabbit aatg-cccca-- B D Pika aatgccccca-- B D Human aatgcctcaa-- B D Chimp aatgcctcaa-- B D Bonobo aatgcctcaa-- B D Gorilla aatgcctcaa-- B D Rhesus aatgcctcaa-- B D Marmoset aatgtctcaa-- B D Tarsier aatgtctcaa-- B D Bushbaby gtttccttga-- B D Malayan flying lemur gatgcctcag-- B D Pig gatacctcaa-- B D Dolphin gatgcctcaa-- B D Cow aatgcctcag-- B D Sheep gatgcctcag-- B D Horse gatgccttaa-- B D Dog gatgcgacaa-- B D Hawaiian monk seal gatgtctcaa-- B D Elephant --cgctgcaaat B D Opossum ============ B D Chinese pangolin ============ B D Rat ------------ B D Shrew ============ B D Hedgehog ============ B D Tenrec ------------ B D Squirrel ============ B D Tree shrew ============ B D Zebrafish ============ B D X. tropicalis ============ B D Chicken ============ B D Lamprey ============ Inserts between block 31 and 32 in window B D Guinea pig 6bp B D Human 6bp B D Chimp 6bp B D Bonobo 6bp B D Gorilla 6bp B D Rhesus 6bp B D Marmoset 6bp B D Tarsier 6bp B D Bushbaby 1bp B D Malayan flying lemur 6bp B D Pig 6bp B D Dolphin 6bp B D Cow 6bp B D Sheep 6bp B D Horse 6bp B D Dog 6bp B D Hawaiian monk seal 6bp Alignment block 32 of 590 in window, 37092078 - 37092144, 67 bps B D Mouse aa---------cttaaatgacctggaggggaatggttgaa--accattaact----tac----ataacta GCF_003668045 aa---------cttagatgattggggggtaaata-----------atcaact----tag----ataacta Beaver aaa--ttttagcttagataattaaagg----ataatggaa--gccattaact----tag----ataaaaa B D Squirrel aa---------ctaaaatatttttaaaaaggggtattgat--accactaact----tag----attgaaa B D Guinea pig ag---------cttagatga----aagaaaggcagttgat--gccaataact----tag----ttaaaag B D Rabbit --gaattttagataagatgaataaagg----agcagtgaa--attattaact----tag----ataaata B D Pika --gactttctcaggagatgaataaagg----agtagtgag--gccattaatt----tag----ttaagta B D Human ---------agcttagatgactgaagg----agcagtgaa--gccattaact----tag----aaaataa B D Chimp ---------agcttagatgactgaagg----agcagtgaa--gccattaact----tag----aaaataa B D Bonobo ---------agcttagatgactgaagg----agcagtgaa--gccattaact----tag----aaaataa B D Gorilla ---------agcttagatgactgaagg----agcagtgaa--gccattaact----tag----aaaataa B D Rhesus ---------agcttagatgactgaagg----agcagtgaa--gccattaatt----tag----aaaataa B D Marmoset ---------agcttagataactgaagg----agcagtgat--gccattaact----tag----aaaat-- B D Tarsier ---------agcttagatgactgaagg----agcagtgaa--gccattaact----tag----aaaataa B D Bushbaby -------------------------------------gag--gctgctgaaa----tag----aa----- B D Malayan flying lemur ---------cacttaaatgattgaagg----ggcagtgaa--gccattaact----tag----gaaatta B D Pig ---------agctttagtgattaaagg----aacagtgaa--gtcactaact----tag----aaaataa B D Dolphin ---------agcttaggtgactgaagg----gacagtgag--gtcattaacttagatag----aaaataa B D Cow ---------agcttaggtagctcaagg----ggcattgag--gtcactgcctt---tag----aaaataa B D Sheep ---------agcttaggtaactcaagg----ggcagtgag--gtcactgcctt---tag----aaaataa B D Horse ---------aggatatacaactgacag----gacagtgaa--atcattaact----tag----aaaatga B D Dog ---------agcttagatgactggagg----gacaatggaacataattaact----tag----aaaat-- B D Hawaiian monk seal ---------agcttaggtgagtgaagg----gatagtggactgtcattaact----tagatcaaaaat-- B D Elephant ---------ttcttagataactgaggg----ggcaatgat--accactaact----cagactgaaaataa B D Tenrec ---------------------tgag---------aataac--accattaact----tagatagaaga-ag B D Opossum ====================================================================== B D Chinese pangolin ====================================================================== B D Rat ---------------------------------------------------------------------- B D Shrew ====================================================================== B D Hedgehog ====================================================================== B D Tree shrew ====================================================================== B D Zebrafish ====================================================================== B D X. tropicalis ====================================================================== B D Chicken ====================================================================== B D Lamprey ====================================================================== Mouse taa--aa-caatctaaa-----ag GCF_003668045 taa--aa-caaactaaagtacgaa Beaver taa--aa-taaagaaga-----aa Squirrel taa--aa-tggacagaa-----aa Guinea pig taa--aattaaattaat-----aa Rabbit taatgaa-gaaaatgaa-----ga Pika taataaa-caaaataag-----ga Human aga--ag-gaaa------------ Chimp aga--ag-gaaa------------ Bonobo aga--ag-gaaa------------ Gorilla aga--ag-gaaa------------ Rhesus aga--ag-gaaa------------ Marmoset --a--ag-gaaa------------ Tarsier aga--ag-gatg------------ Bushbaby ------------------------ Malayan flying lemur aga--ag-g--------------- Pig aga--ag-aaag------------ Dolphin aga--ag-gaaa------------ Cow aga--ag-gaaa------------ Sheep aaa--ag-gaaa------------ Horse aga--aa-gaag------------ Dog --a--ag-aaag------------ Hawaiian monk seal --a--ag-gaag------------ Elephant aga--ag-gaaa------------ Tenrec aaa--ag-gaaa------------ Opossum ======================== Chinese pangolin ======================== Rat ------------------------ Shrew ======================== Hedgehog ======================== Tree shrew ======================== Zebrafish ======================== X. tropicalis ======================== Chicken ======================== Lamprey ======================== Inserts between block 32 and 33 in window B D Squirrel 8bp B D Guinea pig 5bp B D Rabbit 17bp B D Pika 7bp Alignment block 33 of 590 in window, 37092145 - 37092265, 121 bps B D Mouse t-gctt---at-a-gatctatcag---tgga------------tcagctggtcacca----ggcc----- B D Rat t-gatt---at-a-gacctgccag---tgga------------tcagctggtcacca----ggcc----- GCF_003668045 t-gact---at-a-atcctatcag---tggg------------tcagctggccacca----aatc----- Beaver t-ccct---at-aggacattttag---tggaaa-----ggcacttggctgatggaca----g-------- B D Squirrel --tcct---gt-gggacatataagggttgga------------gaggctgg-ggcca----aggc----- B D Guinea pig t-tcct---gt-g-ggaatttagg---tgcagggatctgggaggcaactgactaatg----tgtt----- B D Rabbit t-agctggaag-a-ggc----------tgag------------tcagttggctcata----ggtg----- B D Pika t-ggctg--at-g-gtc----------tgtg-----------------tgaccacga----attc----- B D Human t-gtct---at-aggacatttagg---tggaaggttctggtagacaactgacttagc----gggtatcgc B D Chimp t-gtct---at-aggacatttagg---tggaaggttctggtagacaactgacttagc----gggtatcgc B D Bonobo t-gtct---at-aggacatttagg---tggaaggttctggtagacaactgacttagc----gggtatcgc B D Gorilla t-gtct---at-aggacatttagg---tggaaggttctggtagacaactgacttagc----gggtatcgc B D Rhesus t-gtct---at-aggacatttagg---tggaaggttctggtagacaattgacttagg----ggctatggc B D Marmoset t-gtct---at-aggacatttagg---tagaaggttctggtagacagttgacttagg----gactatggc B D Tarsier t-gcct---at-agaatatttagg---tggaagggtctggtaggcaattgactgaca----gcccat--- B D Bushbaby ----------------------------------------caagcaatag-------------------- B D Malayan flying lemur --gcct---ac-aggacatgttgg---tggacgagtgtggtaggcaattggctgatg----g------gc B D Pig t-gcct---aa-aggacaatgagg---ttaaagaatcttgcaggcagttggctaatg----ggctg---- B D Dolphin tggcct---at-acgaccttgagg---tgaaagggtctggtaggcaattggctaatg----ggctg---- B D Cow t-actt---at-atgacactaagg---tggaaggatctgataggcaattggctattg----ggctg---- B D Sheep t-gctt---at-atgacactgagg---tggaaggatctgataggcagttagctattg----ggctg---- B D Horse t-gact---ag-aggacatttagg---t-ggagggtctggtaggcaattg-------------------- B D Dog t-tcct---aataggacatttagg---tgggagaatctagtagataattggctgatg----ggcta---- B D Hawaiian monk seal t-gctt---attaggacgtttagg---tgggagagtct-gtagataattggctgatg----ggcta---- B D Elephant t-gcct---at-aggacatttagg---tagaagggcccagtaggcaattaatt--------ggctg---- B D Tenrec c-gact---ag-atgcctggcagc---tagaacggcctgataggtaaatagttgttggccaggctg---- B D Opossum ====================================================================== B D Chinese pangolin ====================================================================== B D Shrew ====================================================================== B D Hedgehog ====================================================================== B D Tree shrew ====================================================================== B D Zebrafish ====================================================================== B D X. tropicalis ====================================================================== B D Chicken ====================================================================== B D Lamprey ====================================================================== Mouse --tgt-ctgtatgtgctcaga-----------------------------------gtctctagcatg-- Rat --tgg-ctgttcaggctcagg-------------------cactgt-gtcctccacgtcactggcatgc- GCF_003668045 --tgg-gagtatgggctcaga-------------------cactgt-accctggaagtcatcgacaagt- Beaver --tgt-gggtatggacccagggtgaaataa---------ggtcttt-gctttgggagttagtggtaata- Squirrel --tg----------gctcagg---------------------------------gcctcgtgggcacatg Guinea pig --gggtaggtatggacttagactgaaacag---------gaacttt-gctgtgggagtcactggaatgtt Rabbit --tgg-ctgt--gagctcaagctgaagcag---------aaactttagctttgggagt---tgtctcatg Pika --tgg-atg---------------aaacag---------aaaccgtagctttgaaaat---tggctcatg Human tatgt-aggtatgggctcagacaaaaacag---------aaattttagctgtgggagtcattggcatgta Chimp tatgt-aggtatgggctcagacaaaaacag---------aaattttagctgtgggagtcattggcatgta Bonobo tatgt-aggtatgggctcagacaaaaacag---------aaattttagctgtgggagtcattggcatgta Gorilla tatgt-aggtatgggctcagacaaaaacag---------aaattttagctgtgggagtcattggcatgta Rhesus tatgt-aggtatgggctcagacaaaaacag---------aagttttagctgtgggagtcattggcatgta Marmoset tatgt-aggtatgggcacagacaaaaacag---------aaattttagctttggaagatactggcttata Tarsier ----t-aggtgtgcactcaggcaaaaacag---------aaactttagctttgagagtcattggcatgta Bushbaby -----------------tagatgaaggcct---------gaattataactgttaaa-------------- Malayan flying lemur tgtgt-cggtgtgggctcaggctgaaacgg---------aaactttatctttgagagtcactggcatgta Pig --tgt-ggaaatgggctcgggctgaaacag---------aaactttaggtttgggagacattggcaggtg Dolphin --tgt-ggttatgggctcagactgaaacag---------acacttcaggtttgggagatgttggcatgta Cow --tgt-ggatatgggctcaggctgaaatgg---------aaagttcaggtttaagggacactgacatgtg Sheep --tgt-ggatacaggctcaggctgaaacgg---------aagcttcaggtttaggggacactgacatgtg Horse --cgt-ggatatgggctcaagctgaaccag---------aaactttagatttgggagacatgggtgtgta Dog --tct-ggatatggactcaggctgaaacag---------aaatgtt-gatgtgggaaacattggtgggta Hawaiian monk seal --tgt-ggatatggactcaggctgaaacag---------aaatattagatttgggggacactggtgtgta Elephant ------atggctggactcaggctcaaacagaaacttgctatgtgggagtcgt---------tggcaggtg Tenrec --tgt-gggagtgggttcagcctgaaatag---------aaacttcagttgtgaagatcattggatggtc Opossum ====================================================================== Chinese pangolin ====================================================================== Shrew ====================================================================== Hedgehog ====================================================================== Tree shrew ====================================================================== Zebrafish ====================================================================== X. tropicalis ====================================================================== Chicken ====================================================================== Lamprey ====================================================================== Mouse --------aagaagctgcggg-agaggaacagaagag-aa----a--gggggcagaa--a-ggaaaaggt Rat taatc-taaagaagctgtgga-agaggaacagaaga-------------ggtcagaa--a-agaaaagat GCF_003668045 caatc-taaagaagct--gga-agaggaacagaagag-aa----a--agagaccgaa--g-gggaatggt Beaver aatcc-tacagaaactgtgtt-gggggaatagaggagcac----a--taatgcagga--a-tagaagagt Squirrel tgtcc-tgcagaagctgcaga-agggga--agaggaacat----g--tacattagga--g-tgga----- Guinea pig aatcc-tacagaagct---ga-ggtgaaaaaatagagcac----a--taaagcaaga--a-tagaggcat Rabbit aaccc-tactgaacttatgat-acaggaatagaagagtac----a--tacagcagga--a-cataagaaa Pika aactc-cagtgaagttttgat-acaagaatagaagagcac----a--taaaacagga--g-cagaagact Human aaccc-tatagaaactatggt-agaagaatagaagagcac----a--tacaacagga--g-tagaagaat Chimp aaccc-tatagaaactatggt-agaagaatagaagagcac----a--tacaacagga--g-tagaagaac Bonobo aaccc-tatagaaactatggt-aaaagaatagaagagcac----a--tacaacagga--g-tagaagaac Gorilla aaccc-tacagaaactatggt-agaagaatacaagagcac----a--tacaacagga--g-tagaagaat Rhesus aaccc-tatagaaactatggt-agaagaatagaagagcac----a--tacagcagga--g-tagaagaat Marmoset aaccc-tatagaaactatggt-agaagaatagaagagcat----g--tacaacagta--g-cagaagaat Tarsier agtcg-tacagaagctatgat-ggaggaatagaagagcac----a--taaaacagga--g-tagaagaat Bushbaby ------------------------aagaagaaaagggaac----ggtttcaagagcaaga-taagagaat Malayan flying lemur aatcc-tccagaagctatggt-agaagagtagaagaacgc----a--taaagcagga--a-tagaagaag Pig aatgt-cacagaaggtatggt-ggaagaatagaagagcat----a--taaagcagga--g-cagtggagt Dolphin aatgc-aacacaagctatggt-ggaggaatagaag-gcac----g--tgaagcaaaa--g-cagcagtgt Cow aatgc-aacagaagctctgat-ggaggactggaggagcac----c--tgaagcagaa--g-tag------ Sheep aatgc-aacagaagctttagt-ggaggactgaaggagcac----c--tgaagcagaa--g-tag------ Horse aatca-cacagaagctgtggt-agaggaacagaagagcac----a--taaagcagga--gccagccgcgt Dog aatccttacagaagctatggt-ggaggaataggagagcatgaagg--aaatgcagaa--g-cagaagagt Hawaiian monk seal actccttacagaagctctggt-ggaagaacagaagagcat----g--taaagcaggg--g-caaaagagt Elephant aattc-tacacaagtaatggt-ggagaagtagaggcgtac----a--aaaagcagga--g-cagaggagg Tenrec aattc-tatagaagcgatggtgggagaaacagatgc-----------aaaagctgga--g-cagaagagt Opossum ====================================================================== Chinese pangolin ====================================================================== Shrew ====================================================================== Hedgehog ====================================================================== Tree shrew ====================================================================== Zebrafish ====================================================================== X. tropicalis ====================================================================== Chicken ====================================================================== Lamprey ====================================================================== Mouse - Rat - GCF_003668045 - Beaver - Squirrel - Guinea pig - Rabbit - Pika - Human - Chimp - Bonobo - Gorilla - Rhesus - Marmoset - Tarsier - Bushbaby - Malayan flying lemur - Pig - Dolphin - Cow - Sheep - Horse - Dog - Hawaiian monk seal - Elephant g Tenrec g Opossum = Chinese pangolin = Shrew = Hedgehog = Tree shrew = Zebrafish = X. tropicalis = Chicken = Lamprey = Inserts between block 33 and 34 in window B D Human 2bp B D Chimp 2bp B D Bonobo 2bp B D Gorilla 2bp B D Rhesus 2bp B D Marmoset 2bp B D Tarsier 2bp B D Bushbaby 191bp B D Pig 1bp B D Dolphin 1bp B D Horse 1bp B D Dog 1bp B D Hawaiian monk seal 1bp Alignment block 34 of 590 in window, 37092266 - 37092497, 232 bps B D Mouse gccaa--------------agctgagcccctgaggagaa---ccataa--gggtgctttt----cttgtg B D Rat gccaa--------------gac---gcccctgaagagaatggccataa--gggggctttt----cttgtg GCF_003668045 gccag--------------aacagaacccctaaaggtgg---ccataa--gggtgcttttcacccttatg Beaver gccag--------------agcagaacactcagagaagg---tcacca--caatgctttt---tttccta B D Squirrel -------------------------gtgctcagagaaga------------------------------- B D Guinea pig gctgat-------------ggcggaactctgggagaagt---ctgtca--aaa-gcttcc----cgtgta B D Rabbit gcttag-------------agcagaatcccaggagaagg---gcttca--gaatgcttat----tgtctg B D Pika cctcag-------------agcatgctctctgcagaagg---gcttcaatgaacgtttat----tgtctg B D Human tccag--------------agcagaactctggaagaagg---ccatca--aaatgttttt----tgtct- B D Chimp tccag--------------agcagaactctggaagaagg---ccatca--aaatgttttt----tgtct- B D Bonobo tccag--------------agcagaactctggaagaagg---ccatca--aaatgttttt----tgtct- B D Gorilla tccag--------------agcagaactctggaagaagg---ccatca--aaatgttttt----tgtct- B D Rhesus tccag--------------agcagaactctggaagaagg---ccatca--aaatgttttt----tgtct- B D Marmoset tccag--------------agcagaactctggaaaaagg---ccatca--gaatgttttt----tgtct- B D Tarsier t-cag--------------agcagagc-ctggtagaagg---ccattg--gaatgtctt----------- B D Malayan flying lemur cttag--------------agcagaaccccaggaaaagg---ctatc----aatgctttc----tgttta B D Pig cccag--------------agcagagcctcagaagacag---tcatca--gaatgctttc----aggttg B D Dolphin ctcag--------------agcagaaccccgggagacag---ccatga--gagtgctttc----agattg B D Cow --cag--------------agcaaaaaccc-tgagtcag---ccatca--gaacactttg----agactg B D Sheep --cag--------------agcagaaaccc-cgagacag---ccatca--gaacactttg----agactg B D Horse cccaggaggcgttttagaaagcagaagcccaggaggcag---ccatca--gaatactttc----agaatg B D Dog ctcag--------------agtagagccccaagaagtgg---ccatca--gaat-tcttc----agactg B D Hawaiian monk seal ctcag--------------agcagaaccccaagaagcgg---tcatca--caatgccttc----agactg B D Elephant ctcac--------------agcagaac---------------ccatga--gagtgcactc----agaaag B D Tenrec ctcac--------------agcagaac---------------ccttca--gagtgctctc----agactg B D Opossum ====================================================================== B D Chinese pangolin ====================================================================== B D Shrew ====================================================================== B D Hedgehog ====================================================================== B D Bushbaby ====================================================================== B D Tree shrew ====================================================================== B D Zebrafish ====================================================================== B D X. tropicalis ====================================================================== B D Chicken ====================================================================== B D Lamprey ====================================================================== Mouse a-aaatgtctgccc-------------tgga---------------------------------ca---- Rat c-aagtttctgctc-------------tgaa---------------------------------ca---- GCF_003668045 a-aagtttctgctc-------------tggac--------------------------------ca---- Beaver a-aagttgctgctc-------------tttgt--------------------------------ct---- Squirrel ----------accc-------------t------------------------------------cc---- Guinea pig a-atgtcactgctc-------------ttgt---------------------------------ct---- Rabbit a-aagccat------------------------------------------------------------- Pika a-aagacactgttt-------------tgtgtctttctttttttctcccctaaaaaggagattgca---- Human a-aagtcactgcta-------------ttagt--------------------------------ct---- Chimp a-aagtcactgcta-------------ttagt--------------------------------ct---- Bonobo a-aagtcactgcta-------------ttagt--------------------------------ct---- Gorilla a-aagtcactgcta-------------ttagt--------------------------------ct---- Rhesus a-aagtcactgcta-------------ttagt--------------------------------ct---- Marmoset a-aagtcactgcta-------------tttgt--------------------------------ct---- Tarsier ---------------------------tttgt--------------------------------ct---- Malayan flying lemur a-aagtcactgctc-------------tttgt--------------------------------ct---- Pig acaagtcactt----------------tttgt--------------------------------ct---- Dolphin acaagtggccgctt-------------tctgt--------------------------------ct---- Cow acaattcactgcttagctggtaaagagttcac--------------------------------ctgcaa Sheep acaattcactgcttagctggtaaagcgtctac--------------------------------ctgcaa Horse acatgtcac--------------------cgt--------------------------------ct---- Dog acaagtcactgctc-------------tttgt--------------------------------ct---- Hawaiian monk seal acaagtccctgctc-------------tttgt--------------------------------ct---- Elephant acaagtcactgctc-------------cttgt--------------------------------ct---- Tenrec aaaatccactgctg-------------cttgt--------------------------------cg---- Opossum ====================================================================== Chinese pangolin ====================================================================== Shrew ====================================================================== Hedgehog ====================================================================== Bushbaby ====================================================================== Tree shrew ====================================================================== Zebrafish ====================================================================== X. tropicalis ====================================================================== Chicken ====================================================================== Lamprey ====================================================================== Mouse --------------------------------------------------aaaagg-------------- Rat --------------------------------------------------aaagag-------------- GCF_003668045 --------------------------------------------------aaaggg-------------- Beaver --------------------------------------------------aaaggg-------------- Squirrel --------------------------------------------------agaagg-------------- Guinea pig --------------------------------------------------aaaatg-------------- Rabbit ---------------------------------------------------------------------- Pika --------------------------------------------------aaaaaa-------------- Human --------------------------------------------------gatagg-------------- Chimp --------------------------------------------------gatagg-------------- Bonobo --------------------------------------------------gatagg-------------- Gorilla --------------------------------------------------gatagg-------------- Rhesus --------------------------------------------------gataag-------------- Marmoset --------------------------------------------------gataag-------------- Tarsier --------------------------------------------------gaaaag-------------- Malayan flying lemur --------------------------------------------------aaaagg-------------- Pig --------------------------------------------------aaaagt-------------- Dolphin --------------------------------------------------aaaagg-------------- Cow tgcaggagacctgggtttgatccctggattaggaagatcccctggaaagggaaaggctacccactccagt Sheep tgcaggagacctgggttcgatgcctggattaggaagatcccctggaaagggaaaggctacccactccagt Horse --------------------------------------------------aaaagg-------------- Dog --------------------------------------------------aaaagg-------------- Hawaiian monk seal --------------------------------------------------aaaagg-------------- Elephant --------------------------------------------------aagagg-------------- Tenrec --------------------------------------------------cc------------------ Opossum ====================================================================== Chinese pangolin ====================================================================== Shrew ====================================================================== Hedgehog ====================================================================== Bushbaby ====================================================================== Tree shrew ====================================================================== Zebrafish ====================================================================== X. tropicalis ====================================================================== Chicken ====================================================================== Lamprey ====================================================================== Mouse ---------------------------------------------------------------------- Rat ---------------------------------------------------------------------- GCF_003668045 ---------------------------------------------------------------------- Beaver ---------------------------------------------------------------------- Squirrel ---------------------------------------------------------------------- Guinea pig ---------------------------------------------------------------------- Rabbit ---------------------------------------------------------------------- Pika ---------------------------------------------------------------------- Human ---------------------------------------------------------------------- Chimp ---------------------------------------------------------------------- Bonobo ---------------------------------------------------------------------- Gorilla ---------------------------------------------------------------------- Rhesus ---------------------------------------------------------------------- Marmoset ---------------------------------------------------------------------- Tarsier ---------------------------------------------------------------------- Malayan flying lemur ---------------------------------------------------------------------- Pig ---------------------------------------------------------------------- Dolphin ---------------------------------------------------------------------- Cow attctggcctggagaattccatgaaatgtagagtccatggggtcgc--agagtcagacacaactgagtga Sheep attctggcctggagaattccatgaactgtacagtccatggggtcgcaaagagtcagacacgactgagtga Horse ---------------------------------------------------------------------- Dog ---------------------------------------------------------------------- Hawaiian monk seal ---------------------------------------------------------------------- Elephant ---------------------------------------------------------------------- Tenrec ---------------------------------------------------------------------- Opossum ====================================================================== Chinese pangolin ====================================================================== Shrew ====================================================================== Hedgehog ====================================================================== Bushbaby ====================================================================== Tree shrew ====================================================================== Zebrafish ====================================================================== X. tropicalis ====================================================================== Chicken ====================================================================== Lamprey ====================================================================== Mouse -----------gaactaagtgctcctttgca-cacag---ctgt-ttggtttgcagttccctttg----- Rat -----------gaaataagcactcccctctg-cacag---ctgt-ttggtctgcaa-tccccttg----- GCF_003668045 -----------gaaataagtactcccttcca-cccag---ctat-ttggtttgcagttctctttg----- Beaver -----------aaaataa-taatcaatacca-cacaa---atat-ttggtttgcagttcatcctg----- Squirrel -----------aaattaa-tggtccct-gcg-cacag---ctct-ttaggttgcaggtccctttg----- Guinea pig -----------aaaatag-taaatccttccg-catagggtctacattagcttacaatttcttttg----- Rabbit -----------------------------------ag---ctct-ttgaattgcaactcctttt------ Pika -----------aaaaaaa--ggagattgcta-caaag---ctct-ttgattttcagttccttttg----- Human -----------aaaatag-tagtccctgcca-cacag---ctat-ttggtttacaattccttttg----- Chimp -----------aaaatag-tagtccctgcca-cacag---ctat-ttggtttacaattccttttg----- Bonobo -----------aaaatag-tagtccctgcca-cacag---ctat-ttggtttacaattccttttg----- Gorilla -----------aaaatag-tagtccctgcca-cacag---ctat-ttggtttacaattccttttg----- Rhesus -----------aaaatag-tagtccctgcca-cacag---ctat-ttggtttacaattccttttg----- Marmoset -----------aaaatag-tactctctgccc-cacag---ctat-ttggtttacacttccttttg----- Tarsier -----------aaagcag-tgatccttgcca-cacag---ctaa-ttggtctacaactccttttgtaaaa Malayan flying lemur -----------agaatag-tagttcctacca-caaag---ctat-ctggtttgcaactccttttg----- Pig -----------aaaatat-tagttcttgccattgaag---ttat-ttggtttgcagctgctcttg----- Dolphin -----------aaaatag-tagtttttgcca-tacag---ttat-ttggtttgcagctacttttg----- Cow ctttcactcacaaaatac-taacttctgcca-tacag---ttac-ttggtttgcagctgcttttg----- Sheep ctttcacttacaaaatac-taacttctgcca-tacag---ttac-ttggtttgcagctgcttttg----- Horse -----------agaatag-tagttcttgcca-cacag-------------------ttgcttttg----- Dog -----------aaaatag-tagttcttgcca-gactt---t----gtgttttgcaactacttttg----- Hawaiian monk seal -----------aaaatag-cagttcttgcca-cacac---------tggtttacaactacttttg----- Elephant -----------aaaacag-tagtcctggctg-ta--------------gtttgtaactactgttg----- Tenrec -------------------ttgtcctggcca-tacag---ctct-ttcgtttataactccttttg----- Opossum ====================================================================== Chinese pangolin ====================================================================== Shrew ====================================================================== Hedgehog ====================================================================== Bushbaby ====================================================================== Tree shrew ====================================================================== Zebrafish ====================================================================== X. tropicalis ====================================================================== Chicken ====================================================================== Lamprey ====================================================================== Mouse tgcaagttcatattccagctcataatcttaacctattccccatattcgatgagc--c------------- Rat tacaagttcacatcccagctcacaatcttggcctgttctccatatctgaaggga---------------- GCF_003668045 tgcaagttcatatcctagctcatactgttgatttattttccatatttgagaggaggc------------- Beaver -ataagtca---------------------------ttttcatatttgagaggagcc------------- Squirrel aggaaggtgatatcctagctcatcctgttggtacattttgcatatttgagataagtc------------- Guinea pig agaaaatttctatcctagttcatctggatcattcattttccatatttgggaggaacc------------- Rabbit --gaagtctgtgtcccatctgatcttcctgctacattttccatatttgataagagct------------- Pika aggaagcctgtatcctatataacccttaaact--atttttcatatttgagaagagct------------- Human agaaaatttgtataccagctcatcctgatgattcattttccataatagaaaagactg------------- Chimp agaaaatttgtataccagctcatcctgatgattcattttccataatagaaaagactg------------- Bonobo agaaaatttgtataccagctcatcctgatgattcattttccataatagaaaagactg------------- Gorilla agaaaatttgtataccagctcatcctgatgattcattttccataatagaaaagactg------------- Rhesus agaaaatttgtatatcagctcatcctgattattcattttccataatagaaaagactg------------- Marmoset agaaaatttgtataccagctcatcctgatgattgattttccataatagagaagattg------------- Tarsier aggaagtgtgtatcccagcccatcttgatgatttattttccataat---gaagagtg------------- Malayan flying lemur aggatgtctatatcccagctcatcctgatgattcatttcccatatttgagaagagac------------- Pig aggaagtttgtattctaactcatcctg-tgggtcatttcctatatttgagaaggtct------------- Dolphin aggaagtttgtattctagctcatcctgatgattcatttcccatatttgagaagagct------------- Cow aagaagtctgtattctagctaatcctgatgattcattttccatttctgagaggggcc------------- Sheep aagaagtctgtattctagctaatcctgatgattcattttccatatttgagaggggcc------------- Horse aggaagtttgtatcccagctcatcctgatgattcatttgccatctctgaaaagagcc------------- Dog aagaagtttgtgttcctgcccatcctgattattcagtctccatatttgagaaaagca------------- Hawaiian monk seal aggaagtttgtgtccctgcccatcccgattattcagtttccatatttgagaagagcc------------- Elephant aggaaatttgtatcctagctcatctccatggtttgttttccttatctgagaagagcc------------- Tenrec a--aagtttg--tctgagtttagcttgatcgtttgttttcgtcatttgagaagacacttttttaaattgc Opossum ====================================================================== Chinese pangolin ====================================================================== Shrew ====================================================================== Hedgehog ====================================================================== Bushbaby ====================================================================== Tree shrew ====================================================================== Zebrafish ====================================================================== X. tropicalis ====================================================================== Chicken ====================================================================== Lamprey ====================================================================== Mouse ----------ctatgttatact-aaaagcttgc------------------------------------- Rat --------------gttacact-aaaagtttgc------------------------------------- GCF_003668045 ----------ctatgttaagct-aaaagcttgc------------------------------------- Beaver ----------ctgtgttaaagtggaaagttggt------------------------------------- Squirrel ----------ctatattaaagtggaaagctggc------------------------------------- Guinea pig ----------ttgtattaaagtggaaaattgat------------------------------------- Rabbit ----------tt-----------gagagctgcc------------------------------------- Pika ----------tt-----------gaaagctggccataaatgaaattttgaacccaatgattttataataa Human ----------ctgtgttaaaattgaaagctggc------------------------------------- Chimp ----------ttgtgttaaaattgaaagctggc------------------------------------- Bonobo ----------ttgtgttaaaattgaaagctggc------------------------------------- Gorilla ----------ttgtgttaaaattgaaagctggc------------------------------------- Rhesus ----------ttgtattaaaattgaaagctggc------------------------------------- Marmoset ----------ctgtgttaaaattgaaagctggc------------------------------------- Tarsier ----------ctgtgctaaagttgaaagctggc------------------------------------- Malayan flying lemur ----------ttgtattaaaattgaaagcagac------------------------------------- Pig ----------ctttgttaaagctgg-tgctgtc------------------------------------- Dolphin ----------ctatgttaaagctggaagctgtt------------------------------------- Cow ----------ctgtgttaaagctggaagctgtc------------------------------------- Sheep ----------ctatgttaaagctggaagctgtc------------------------------------- Horse ----------ctgtgttaaagttgaaagctatc------------------------------------- Dog --------------gttaaagttgaaagctgtc------------------------------------- Hawaiian monk seal ----------ctatattaaagttgaaagctgtc------------------------------------- Elephant ---------ccagtgttaaagttgaaagccggc------------------------------------- Tenrec ttttctttatttgtgttaaatttgaaagctgac------------------------------------- Opossum ====================================================================== Chinese pangolin ====================================================================== Shrew ====================================================================== Hedgehog ====================================================================== Bushbaby ====================================================================== Tree shrew ====================================================================== Zebrafish ====================================================================== X. tropicalis ====================================================================== Chicken ====================================================================== Lamprey ====================================================================== Mouse -----tttatagcta---------atc---------tct-agc--------------------------- Rat -----ttcataccta---------atc---------tct-aga--------------------------- GCF_003668045 -----catatatcta---------att---------tct-aga--------------------------- Beaver -----tatgatattg---------atc---------ttt-aga--------------------------- Squirrel -----tg-agactgt---------ttc---------ccg-aga--------------------------- Guinea pig -----tatgtgactg---------atc---------tctgaga--------------------------- Rabbit -----tatgagattg---------atc-attcaaaccca-aga--------------------------- Pika aaagatgtgagattacggtttgccatcaactcaaagaca-aaa--------------------------- Human -----tatcagactg---------atc---------ttt-aga--------------------------- Chimp -----tatcagactg---------atc---------ttt-aga--------------------------- Bonobo -----tatcagactg---------atc---------ttt-aga--------------------------- Gorilla -----tatcagactg---------atc---------ttt-aga--------------------------- Rhesus -----tatcagactg---------atc---------ttt-aga--------------------------- Marmoset -----tatcagacta---------atc---------ttt-aga--------------------------- Tarsier -----tataaga--------------c---------ttt-aga--------------------------- Malayan flying lemur -----tataagagtg---------atc---------ttt-aga--------------------------- Pig -----t---------------------------------------------------------------- Dolphin -----tgtaagaccg---------atc---------ttt-aga--------------------------- Cow -----tataagactg---------acc----------tt-aga--------------------------- Sheep -----tgtaagactg---------ctc----------tt-aga--------------------------- Horse -----tgtaagaccg---------atc---------ttt-aggggccggccctgtggcccagtggtgaag Dog -----aataagtctg---------atc---------ttt-aga--------------------------- Hawaiian monk seal -----aataagtctg---------atc---------ttt-aga--------------------------- Elephant -----tgtaagacag---------atc---------ttt-aaa--------------------------- Tenrec -----tctaagacag---------atc--------tttt-aaa--------------------------- Opossum ====================================================================== Chinese pangolin ====================================================================== Shrew ====================================================================== Hedgehog ====================================================================== Bushbaby ====================================================================== Tree shrew ====================================================================== Zebrafish ====================================================================== X. tropicalis ====================================================================== Chicken ====================================================================== Lamprey ====================================================================== Mouse ---------------------------------------------------------------acct--- Rat ---------------------------------------------------------------acct--- GCF_003668045 ---------------------------------------------------------------acat--- Beaver ---------------------------------------------------------------acat--- Squirrel ---------------------------------------------------------------actt--- Guinea pig ---------------------------------------------------------------aatt--- Rabbit ---------------------------------------------------------------attt--- Pika ----------------------------------------cagaagctgtattagaatgtgctatttctg Human ---------------------------------------------------------------actt--- Chimp ---------------------------------------------------------------actt--- Bonobo ---------------------------------------------------------------actt--- Gorilla ---------------------------------------------------------------actt--- Rhesus ---------------------------------------------------------------actt--- Marmoset ---------------------------------------------------------------actt--- Tarsier ---------------------------------------------------------------acct--- Malayan flying lemur ---------------------------------------------------------------ac----- Pig ---------------------------------------------------------------------- Dolphin ---------------------------------------------------------------tcct--- Cow ---------------------------------------------------------------tcct--- Sheep ---------------------------------------------------------------tcct--- Horse tttgcacgctcggcttcggcagcccaggtttcggctgggtcagatcctgggcgcagacatggcacca--- Dog ---------------------------------------------------------------accg--- Hawaiian monk seal ---------------------------------------------------------------accc--- Elephant ---------------------------------------------------------------acc---- Tenrec ---------------------------------------------------------------acct--- Opossum ====================================================================== Chinese pangolin ====================================================================== Shrew ====================================================================== Hedgehog ====================================================================== Bushbaby ====================================================================== Tree shrew ====================================================================== Zebrafish ====================================================================== X. tropicalis ====================================================================== Chicken ====================================================================== Lamprey ====================================================================== Mouse -------ttct---------gtggcag Rat -------ctc----------gtgacag GCF_003668045 -------ctc-----------tgata- Beaver -------ctcttataacttcatgatag Squirrel -------c------------aagacag Guinea pig -------c------------ttgatga Rabbit -------c------------ataataa Pika gggccagc------------acaatgg Human -------ctctgaggatttcatgataa Chimp -------ctctgaggatttcatgataa Bonobo -------ctctgaggatttcatgataa Gorilla -------ctctgaggatttcatgataa Rhesus -------ctctgaggagttcatgataa Marmoset -------atctgaggatttcatgataa Tarsier -------ctcaga----------atca Malayan flying lemur ---------ctgagaattttatgacaa Pig --------------------------- Dolphin -------ctctgagaat---------- Cow -------gtgtgagaat---------- Sheep -------gtgtgagaat---------- Horse -------ctc--atcag---------- Dog -------ctc--agcat---------- Hawaiian monk seal -------ctc--agaat---------- Elephant --------tctgggaatttc---atca Tenrec -------ttctggggatttcttgataa Opossum =========================== Chinese pangolin =========================== Shrew =========================== Hedgehog =========================== Bushbaby =========================== Tree shrew =========================== Zebrafish =========================== X. tropicalis =========================== Chicken =========================== Lamprey =========================== Inserts between block 34 and 35 in window B D Pika 23bp B D Dolphin 15bp B D Cow 10bp B D Sheep 10bp B D Horse 193bp B D Dog 10bp B D Hawaiian monk seal 10bp Alignment block 35 of 590 in window, 37092498 - 37092516, 19 bps B D Mouse aacaataatagagcccta-----------------------------a B D Rat aacaataataaagcccta-----------------------------a GCF_003668045 ---actggcagaacccta-----------------------------a Beaver agaaataatagaattcca-----------------------------a B D Squirrel t--gataatataatcc-a-----------------------------a B D Guinea pig a--aataatcaaatccca-----------------------------g B D Rabbit agagatgatgggattcca-----------------------------g B D Pika gcaaacgccagcatcccatgagcactggttcatgtcccagctgttcca B D Human agtgataatagaattcca-----------------------------a B D Chimp agtgataatagaattcca-----------------------------a B D Bonobo agtgataatagaattcca-----------------------------a B D Gorilla agtgataatagaattcca-----------------------------a B D Rhesus agtgataatagaattcca-----------------------------a B D Marmoset agtggtaacagaattcca-----------------------------a B D Tarsier aatgat-----aattcca-----------------------------g B D Malayan flying lemur agtgataatacaattcca-----------------------------a B D Pig ----ataatggaattcca-----------------------------g B D Dolphin cttgataatagaattcca-----------------------------a B D Cow agtggtaatagaattcca-----------------------------g B D Sheep agtggtaatagaattcca-----------------------------g B D Horse agtgataataaaattcca-----------------------------g B D Dog agtagtaacaggattcca-----------------------------a B D Hawaiian monk seal agtgacaacagaattcca-----------------------------a B D Elephant cgtgataatagaattcca-----------------------------a B D Tenrec agtaataatagaattcca-----------------------------a B D Opossum ================================================ B D Chinese pangolin ================================================ B D Shrew ================================================ B D Hedgehog ================================================ B D Bushbaby ================================================ B D Tree shrew ================================================ B D Zebrafish ================================================ B D X. tropicalis ================================================ B D Chicken ================================================ B D Lamprey ================================================ Alignment block 36 of 590 in window, 37092517 - 37092561, 45 bps B D Mouse cttgccat-ctcccg----------------aa-gaaa-ggac-----------------acagagc--t B D Rat ctggccat-ctccca----------------aa-gaaa-ggac-----------------acagaac--t GCF_003668045 cttgccat-cttccc----------------aa-gaaatggac-----------------acaaaac--t Beaver cttgctac-cacctc----------------at-aaa--ggaa-----------------atggagc--t B D Squirrel ctttctat-cacctt----------------aa-aaga-ggaa-----------------gtggagc--t B D Guinea pig cttgccat-catttc----------------aa-aaaa-ggaa-----------------atggaac--t B D Rabbit cttgccat-caactc----------------aa-aaac-agaa-----------------ttgaaac--t B D Pika cttcccatccaactcctagctaagagcctggaa-aagc-agtggaggatggctcaaatccttgggac--c B D Human cttgccat-cacctc----------------aa-aaaagggaa-----------------gtggtac--t B D Chimp cttgccat-cacctc----------------aa-aaaagggaa-----------------atggtac--t B D Bonobo cttgccat-cacctc----------------aa-aaaagggaa-----------------atggtac--t B D Gorilla cttgccat-cacctc----------------aa-aaaagggaa-----------------atggtac--t B D Rhesus tttgccat-cacctc----------------aa-aaaagggaa-----------------atggtac--t B D Marmoset cttgccat-ccccgc----------------aa-agaaggaaa-----------------attgtac--t B D Tarsier cttgtcat-cacctc---------------aaa-aaaaaggaa-----------------atggaac--t B D Malayan flying lemur cttgccat-cacctc---------------aaa-aaaaaggaa-----------------ttagaac--t B D Pig tctgccct-cacctc----------------aaaaaat-ggaa-----------------gtagaac--t B D Dolphin tttgccct-cacctt----------------aa--------aa-----------------atggaac--t B D Cow tttgctct-cacttc----------------aa-aaat-ggaa-----------------atggaac--t B D Sheep tttgctct-cacctc----------------ac-aaat-ggaa-----------------atggaac--t B D Horse cttgccat-cacctc----------------aa-aaaa-ggaa-----------------atggaag--t B D Chinese pangolin cttgtctt-cacctc-----------------a-aaaa-ggaa-----------------atggaac--t B D Dog gttgccct-cacctc----------------aa-aaaa-tgaa-----------------atgaga---- B D Hawaiian monk seal gttgccct-cacctc----------------aa-aaaa-ggaa-----------------atggga---- B D Elephant gctgacct-tgtctc----------------ag-gaaa-ggaa-----------------atgggat--t B D Tenrec cctgacct-ggccac----------------aa-gaaa-tgaa-----------------aaaggattct B D Opossum ====================================================================== B D Shrew ====================================================================== B D Hedgehog ====================================================================== B D Bushbaby ====================================================================== B D Tree shrew ====================================================================== B D Zebrafish ====================================================================== B D X. tropicalis ====================================================================== B D Chicken ====================================================================== B D Lamprey ====================================================================== Mouse aa-----------------------t--------------------------------gatttcgcaa Rat aa-----------------------t--------------------------------gattttacag GCF_003668045 ga-----------------------t--------------------------------ggtcttacaa Beaver aa-----------------------c--------------------------------agtctttcaa Squirrel aa-----------------------t--------------------------------agtcccatag Guinea pig aa-----------------------t--------------------------------tgccttataa Rabbit tt-----------------------g------------------------------------ttagac Pika ct-----------------------gcacccatgtgggagacccagctcttggttcctggctttggat Human aa-----------------------c--------------------------------agtgttagaa Chimp aa-----------------------c--------------------------------agtgttagaa Bonobo aa-----------------------c--------------------------------agtgttagaa Gorilla aa-----------------------c--------------------------------agtgttagaa Rhesus aa-----------------------c--------------------------------aatgtgagaa Marmoset aa-----------------------c--------------------------------agtgttagaa Tarsier ta------------------tattct--------------------------------agtgttaaaa Malayan flying lemur ac-----------------------t--------------------------------agtgttagaa Pig ga-----------------------t--------------------------------agtgctataa Dolphin aa-----------------------c--------------------------------agtgc-agaa Cow aa-----------------------t--------------------------------ggtgctagaa Sheep aa-----------------------t--------------------------------ggtgttagaa Horse -a-----------------------t--------------------------------agtgttagaa Chinese pangolin aa-----------------------t--------------------------------agtgttagaa Dog -aaaaaataaaaaatgaaatgagagt--------------------------------agtgtaaaaa Hawaiian monk seal -a-----------------------t--------------------------------agtgtaagaa Elephant aa-----------------------t--------------------------------agtgttagaa Tenrec aa-----------------------t--------------------------------agtgttaaaa Opossum ==================================================================== Shrew ==================================================================== Hedgehog ==================================================================== Bushbaby ==================================================================== Tree shrew ==================================================================== Zebrafish ==================================================================== X. tropicalis ==================================================================== Chicken ==================================================================== Lamprey ==================================================================== Inserts between block 36 and 37 in window B D Pig 2bp B D Dolphin 2bp B D Cow 2bp B D Sheep 2bp B D Horse 2bp B D Chinese pangolin 2bp B D Dog 2bp B D Hawaiian monk seal 205bp Alignment block 37 of 590 in window, 37092562 - 37092619, 58 bps B D Mouse tg-------------------------------------------------------------------- B D Rat tg-------------------------------------------------------------------- GCF_003668045 tg-------------------------------------------------------------------- Beaver tg-------------------------------------------------------------------- B D Squirrel tg-------------------------------------------------------------------- B D Guinea pig tg-------------------------------------------------------------------- B D Rabbit tg-------------------------------------------------------------------- B D Pika tggctcagttcatcattgttaccatttggagagagaaccaatggacggaagatctttctctgtctcgcct B D Human tg-------------------------------------------------------------------- B D Chimp tg-------------------------------------------------------------------- B D Bonobo tg-------------------------------------------------------------------- B D Gorilla tg-------------------------------------------------------------------- B D Rhesus tg-------------------------------------------------------------------- B D Marmoset tg-------------------------------------------------------------------- B D Tarsier tg-------------------------------------------------------------------- B D Malayan flying lemur tg-------------------------------------------------------------------- B D Pig ---------------------------------------------------------------------- B D Dolphin ---------------------------------------------------------------------- B D Cow ---------------------------------------------------------------------- B D Sheep ---------------------------------------------------------------------- B D Horse ---------------------------------------------------------------------- B D Chinese pangolin ---------------------------------------------------------------------- B D Dog ---------------------------------------------------------------------- B D Hawaiian monk seal ---------------------------------------------------------------------- B D Elephant tg-------------------------------------------------------------------- B D Tenrec tg-------------------------------------------------------------------- B D Opossum ====================================================================== B D Shrew ====================================================================== B D Hedgehog ====================================================================== B D Bushbaby ====================================================================== B D Tree shrew ====================================================================== B D Zebrafish ====================================================================== B D X. tropicalis ====================================================================== B D Chicken ====================================================================== B D Lamprey ====================================================================== Mouse --cactctttttct----tttgaagaaagata--------------------------aaatgcaatg-- Rat --cactatttctcttgaatttgaagacagata-----a------g---atcacttgttaaatgcaatg-- GCF_003668045 --cactgtttctgt--aacttgaagaaagata---taa------a---atcgttcattagatacaatg-- Beaver --tactgtttctat--aatttgtggaaggatc-----acaaatta---atcacttgttaagcataataca Squirrel --cattatttctat--aattggtggaaggata-----t------a---ataacttgttaagcataatata Guinea pig --tgctatttctat--aatgtgtagaagaata----ta------a---agtacttgttaattataatata Rabbit --tgctatttctgt--aatcataatgttattt------------g---atatttcatgaattgcaac--- Pika tctgttaaatctgc--atttccaataaaaata------------a---atattttaaaaaatcaaact-- Human --tgctgtttttgt--aatttgtggaagaatg------------t---aac----actaatcataatatg Chimp --tgctgtttttgt--aatttgtggaagaatg------------t---aacacttactaatcata--atg Bonobo --tgctgtttttgt--aatttgtggaagaatg------------t---aacacttactaatcata--atg Gorilla --tgctgtttttgt--aatttgtggaagaatg------------t---aacacttactaatcataatatg Rhesus --tgctgtttttgt--aagttgtggaagaaca------------c---gtcacttactaatcataatatg Marmoset --tgctgtttttgt--aatgtgtggaagaacg------------t---atcactgactaatcataatatg Tarsier --tactgtttgtgt--aa-ttgtagaagaaca------------tataatcacttgatagtcataatgtg Malayan flying lemur --tgctatttctgt--aatttgtggaaaaaca------------tttaatcacttgctaatcataatatg Pig --tgctatttttat--cttttgtggaaggaac--acat------t---atcacttactaatcata----- Dolphin --tgctatttttat--catttgtggaaggaac--acat------t---atcacttactaatcatactatg Cow --tgctatttttat--cagctgtgaaaggaac--acat------t---atcactaactgatcatactata Sheep --tgctatttttat--cagctgtgaaaggaac--acat------t---atcacttactgatcatactata Horse --tggtatttttat--aatttgtagaaggaat--gtat------t---atcacttactaatcatactgtg Chinese pangolin --tgctatttttac--ca-ttgtggaaggacc--atgt------t---agcacttactgatcatactatg Dog --tgctatttgtat--catttgtggaaggaacaaatat------t---ttcacttactaatcataccatg Hawaiian monk seal --tgctatttttat--catttgtggaaggaacaaatat------t---atcacttactaatcataccttg Elephant --tgctagttttgt--aatttgtggaagggac--atag------t---atcacttgccaaccataatata Tenrec --ctctagttcttt--aatttgtggacagaac--atag------c---atcacttgccagccataatctg Opossum ====================================================================== Shrew ====================================================================== Hedgehog ====================================================================== Bushbaby ====================================================================== Tree shrew ====================================================================== Zebrafish ====================================================================== X. tropicalis ====================================================================== Chicken ====================================================================== Lamprey ====================================================================== Mouse -----tatcctgg------tatt-----------------------------ttatctg----------- Rat -----tatcttgg------tatt--------tatggtttagaacagcaggtatagtctgctct-ataata GCF_003668045 -----tatcctgg------tatc-------ttatggattagaatagtaggtataat-------------a Beaver taacttactttga------tatt-------ttgtgaattataacattaagtgaaattca----------g Squirrel tagcttattttga------tatt-------tcataaattgtaccattaagcataattca----------t Guinea pig gaacttat-ttag------tatttcatgaattat-------accagtaagtgtaattca----------g Rabbit ---------------------------------agaagtgtaattcagttccacagt------------a Pika -----taatttga------tatt-------tcatgaattgtaaatggaagtagaagt------------g Human taacttaagt--a------taat-------tca---gctgt----------------------------- Chimp taacttaagt--a------taat-------tca---gctgt----------------------------- Bonobo taacttaagt--a------taat-------tca---gctgt----------------------------- Gorilla taacttaagt--a------taat-------tca---gctgt----------------------------- Rhesus taacttaagt--a------taat-------tca---ggttt----------------------------- Marmoset taacttaaat--a------taat-------tca---gctgt----------------------------- Tarsier taacttattttga------tata-------tcatgggttgt----------------------------- Malayan flying lemur taacttattttga------tatt-------tca-----tga----------------------------- Pig ---cttattttgg------tatt-------tcatgaattgtagcag-aattataat----ttgtgt---- Dolphin taacttattttgg------tatt-------tcatgaattgtaatag-aattataattcagttgtgtaata Cow tatctcattttgg------catt-------tcaagacttgtaagag-aattataattcagttgtgtaata Sheep taccttattttga------tatt-------tcaagaattgtaacag-aattataattcacttgtgtaata Horse taacttattttga------tatt-------ttgtgaattataac-------ag-------ttg------- Chinese pangolin taacttattttga------tatt-------tagtgaattgtaac-------ataattcacttg------- Dog taacttattttga------tatt-------tcactaattataac-------ataattcagttg------- Hawaiian monk seal taacttattttga------tatt-------tcattaattataacat-tattataatttagttg------- Elephant taacttactttga------tatt-------tcatgaactgtaac-------ataattcagctgtataata Tenrec taacttatgttgataattgtatt-------tcaggaactgtaac-------ataatttagctatata--- Opossum ====================================================================== Shrew ====================================================================== Hedgehog ====================================================================== Bushbaby ====================================================================== Tree shrew ====================================================================== Zebrafish ====================================================================== X. tropicalis ====================================================================== Chicken ====================================================================== Lamprey ====================================================================== Mouse -------------------------------------g Rat cca-----------tgacagataac-------t-agag GCF_003668045 cca-----------tatttgataactaccatgt-aaag Beaver ctg---------tctgtttgatacccaccgtgtaaaaa Squirrel ctgta----tgatatatctgataccctccatttaaaaa Guinea pig cttca----taatatgtttaatgcccaccatgtaaaaa Rabbit tta-----------tgtcttacacctaccatgtgaaaa Pika tga-----------tgtcttactcctaccagatgaaaa Human -------------------------------------- Chimp -------------------------------------- Bonobo -------------------------------------- Gorilla -------------------------------------- Rhesus -------------------------------------- Marmoset -------------------------------------- Tarsier -------------------------------------- Malayan flying lemur -------------------------------------- Pig ----gatatcatgtcatagtacacctatagtgtgaaaa Dolphin tcatg---tcctattat----tacctaccatgtgaaaa Cow tta------------------tatctaccatgtgaaaa Sheep tta------------------tatctaccatgtgaaaa Horse ---------tataatatcatgtacctaccatatgaaaa Chinese pangolin ---------tgtaatatgtcacacctaccatgtgaaac Dog ---------tgtgtcatattatacctgccatgtgacaa Hawaiian monk seal ---------tgtcatgtgtcatacctaccatgtgacaa Elephant tca--------tgtcttatcatgcctatcttgtgagaa Tenrec -------------tcatattatacctaaattgtgagaa Opossum ====================================== Shrew ====================================== Hedgehog ====================================== Bushbaby ====================================== Tree shrew ====================================== Zebrafish ====================================== X. tropicalis ====================================== Chicken ====================================== Lamprey ====================================== Inserts between block 37 and 38 in window B D Human 34bp B D Chimp 34bp B D Bonobo 34bp B D Gorilla 34bp B D Rhesus 34bp B D Marmoset 34bp B D Tarsier 51bp B D Malayan flying lemur 60bp Alignment block 38 of 590 in window, 37092620 - 37092624, 5 bps B D Mouse t-gtta B D Rat t-gtta GCF_003668045 t-gtta Beaver t-atta B D Squirrel t-attg B D Guinea pig t-att- B D Rabbit t-atta B D Pika t-gcta B D Human c-atta B D Chimp c-atta B D Bonobo c-atta B D Gorilla c-ataa B D Rhesus c-atta B D Marmoset c-atta B D Tarsier c-actg B D Bushbaby t-atta B D Malayan flying lemur t-atta B D Pig t-atta B D Dolphin t-atta B D Cow t-atta B D Sheep t-a-ta B D Horse t--att B D Chinese pangolin ttacta B D Dog t-atta B D Hawaiian monk seal t-atta B D Elephant t-atta B D Tenrec t-atga B D Opossum ====== B D Shrew ====== B D Hedgehog ====== B D Tree shrew ====== B D Zebrafish ====== B D X. tropicalis ====== B D Chicken ====== B D Lamprey ====== Alignment block 39 of 590 in window, 37092625 - 37092653, 29 bps B D Mouse aaagttttagaagtctgttctaagctcta B D Rat aaagttttaggagtctgttctaagctcta GCF_003668045 aaagttctggaagtctgttctaagctcta Beaver aaagttttaaaaataagttctaagttcta B D Squirrel aaagtcttggaaatctg---taagttcta B D Guinea pig aaagtttaggatatttgttcagagttcta B D Rabbit aacattttagaaatctgttttaagttcta B D Pika aatgttttagaaata-----taaattcta B D Human aaggttttagaaatctg-------tacta B D Chimp aaggttttagaaatctg-------tacta B D Bonobo aaggttttagaaatatg-------tacta B D Gorilla aaggttttagaaatctg-------tactg B D Rhesus aaggttttagaaatctg-------tacta B D Marmoset agggttttagaaatctg-------tacta B D Tarsier atggttttggaaatctg-------tacta B D Bushbaby aaggttttggaaa--ta-------ttcta B D Malayan flying lemur atagttttggaaatcta-----atttcta B D Pig aaagctt--ggaatctg-------ttctt B D Dolphin aaggttttggaaatgtg-------ttcta B D Cow aaggttttggaaatatg-------ttcta B D Sheep aaggttttggaagtatg-------ttcta B D Horse aaggttttcgaaatctg-------ttcta B D Chinese pangolin aaggttttagaca------------tcta B D Dog aaggtttt-gaaatctg-------ttcta B D Hawaiian monk seal aaggttttggaaatctg-------ttcta B D Hedgehog agagctttgggaatctc-------ttcta B D Elephant aaggttttgtaaatttgttccaagtccta B D Tenrec gtgagtttgtagatttgtcccaagtccta B D Opossum ============================= B D Shrew ============================= B D Tree shrew ============================= B D Zebrafish ============================= B D X. tropicalis ============================= B D Chicken ============================= B D Lamprey ============================= Inserts between block 39 and 40 in window B D Hedgehog 3bp Alignment block 40 of 590 in window, 37092654 - 37092658, 5 bps B D Mouse acaaa---- B D Rat acaca---- GCF_003668045 acaaa---- Beaver acaaa---- B D Squirrel acaat---- B D Guinea pig acaaa---- B D Rabbit acaaa---- B D Pika acaa----- B D Human acaaa---- B D Chimp acaaa---- B D Bonobo acaaa---- B D Gorilla acaaa---- B D Rhesus acaaa---- B D Marmoset acaaa---- B D Tarsier acata---- B D Bushbaby acaaa---- B D Malayan flying lemur acaaa---- B D Pig acaaa---- B D Dolphin acaaa---- B D Cow acaaa---- B D Sheep acaaa---- B D Horse acaaa---- B D Chinese pangolin acaaa---- B D Dog acaga---- B D Hawaiian monk seal acaga---- B D Hedgehog --aca---- B D Shrew --aca---- B D Elephant acaaatttt B D Tenrec acaga---- B D Opossum ========= B D Tree shrew ========= B D Zebrafish ========= B D X. tropicalis ========= B D Chicken ========= B D Lamprey ========= Alignment block 41 of 590 in window, 37092659 - 37092661, 3 bps B D Mouse c--ta B D Rat c--ta GCF_003668045 cttta Beaver cttta B D Squirrel tttca B D Guinea pig tttta B D Rabbit tttta B D Pika ----a B D Human tgtta B D Chimp tgtta B D Bonobo tgtta B D Gorilla tgtta B D Rhesus tgtta B D Marmoset tgtta B D Tarsier attta B D Bushbaby ttttg B D Malayan flying lemur ttttt B D Pig tttca B D Dolphin cttta B D Cow tttca B D Sheep tttta B D Horse tttta B D Chinese pangolin cttca B D Dog tttta B D Hawaiian monk seal cttta B D Hedgehog tc-ca B D Shrew tctta B D Elephant attta B D Tenrec atgta B D Opossum --ctt B D Tree shrew ===== B D Zebrafish ===== B D X. tropicalis ===== B D Chicken ===== B D Lamprey ===== Alignment block 42 of 590 in window, 37092662 - 37092669, 8 bps B D Mouse --tt--tct-----gca B D Rat --tt--tct-----gca GCF_003668045 --tt--tct-----cca Beaver --tt--ttt-----gtg B D Squirrel --tt--tat-----gta B D Guinea pig --tt--tct-----gta B D Rabbit --tttatat-----ttg B D Pika --tctgttt-----ttc B D Human --tt--tat-----gta B D Chimp --tt--tat-----gta B D Bonobo --tt--tat-----gta B D Gorilla --tt--tat-----gta B D Rhesus --tt--tat-----gta B D Marmoset --tt--tat-----ata B D Tarsier --tt--tat-----gtg B D Bushbaby --tt--tat-----ata B D Malayan flying lemur --tt--tat-----gta B D Pig --tt--tgt-----gta B D Dolphin --tt--tat-----gta B D Cow --tt--tat-----gta B D Sheep --tt--tat-----gta B D Horse --tt--tat-----gta B D Chinese pangolin --tt--tatctatgtta B D Dog --tt--tatatat-ata B D Hawaiian monk seal --tt--tatttat-gta B D Hedgehog --tt--tgt-----gta B D Shrew --tg--tat-----gta B D Elephant --tt--tat-----gta B D Tenrec --tt--tat-----gtc B D Opossum --tg--tgt-----gta B D X. tropicalis tttt--tct-----g-- B D Tree shrew ================= B D Zebrafish ================= B D Chicken ================= B D Lamprey ================= Alignment block 43 of 590 in window, 37092670 - 37092671, 2 bps B D Mouse tc B D Rat tc GCF_003668045 tc Beaver tc B D Squirrel tt B D Guinea pig tc B D Rabbit tc B D Pika tc B D Human tc B D Chimp tc B D Bonobo tc B D Gorilla tc B D Rhesus tc B D Marmoset tc B D Tarsier tc B D Bushbaby tc B D Malayan flying lemur tc B D Pig tc B D Dolphin tc B D Cow tc B D Sheep tc B D Horse tc B D Chinese pangolin tc B D Dog tc B D Hawaiian monk seal tc B D Hedgehog ac B D Shrew tc B D Elephant tc B D Tenrec tc B D Opossum tc B D Chicken tc B D X. tropicalis tt B D Lamprey tc B D Tree shrew == B D Zebrafish == Alignment block 44 of 590 in window, 37092672 - 37092737, 66 bps B D Mouse agctgtttgtgatatagggtctgcttcatttaagtacgatatgcgccgactcagtgaaatccttgc B D Rat agctgtttgtgacatagggtctgcttcatttaagtatgatatgcgccgactcagtgagattctggc GCF_003668045 agctgtttgtgatataggatctgcttcatttaagtatgatatgcgccgactcagtgaaatcctagc Beaver agctgtttgtgatatagggtctgcctcctttaaatatgacatgcgccgactcagtgaaattttggc B D Squirrel agctgtttgtgatatagggtctgcctcctttaaatatgatatgcgccgcctcagtgaaattctggc B D Guinea pig agctgtttgtgatatagggtctgcctcctttaagtatgatatgcgccgactcagtgaaattctggc B D Rabbit agctgtttgtgatataggttctgcttcctttaaatatgatatgcgccgactcagtgaaattctggc B D Pika agctgtttgtgacataggctctgcctcctttaaatatgatatgcgccgactcagtgaaattctggc B D Human agctgtttgtgatatagggtctgcctcctttaaatatgatatgcgccgactcagtgaaattctggc B D Chimp agctgtttgtgatatagggtctgcctcctttaaatatgatatgcgccgactcagtgaaattctggc B D Bonobo agctgtttgtgatatagggtctgcctcctttaaatatgatatgcgccgactcagtgaaattctggc B D Gorilla agctgtttgtgatatagggtctgcctcctttaaatatgatatgcgccgactcagtgaaattctggc B D Rhesus agctgtttgtgatatagggtctgcctcgtttaaatatgatatgcgccgactcagtgaaattctggc B D Marmoset agctgtttgcgatatagggtctgcctcctttaaatatgatatgcgccgactcagtgaaattctggc B D Tarsier agctgtttgtgatatagggtctgcctcctttaaatatgatatgcgccgactcagtgaaattctggc B D Bushbaby agctgtttgtgatatagggtctgcctcctttaaatatgatatgcgtcgactcagtgaaattctggc B D Malayan flying lemur agctgtgtgtgatatagggtctgcctcctttaaatatgatatgcgccgactcagtgaaattctggc B D Pig agctgtttgtgatatagggtctgcttcctttaaatatgatatgcgccgcctcagtgaaattctggc B D Dolphin agctgtttgtgatatagggtctgcttcctttaaatatgacatgcgccgcctcagtgaaattctagc B D Cow agctgtttgtgatatagggtctgcttcctttaaatatgatatgcgccgcctcagtgaaattctggc B D Sheep agctgtttgtgatatagggtctgcttcttttaaatatgacatgcgccgcctcagtgaaattctggc B D Horse agctgtttgtgatatagggtctgcctcctttaaatatgatatgcgccgactcagtgaaattctggc B D Chinese pangolin agctgtttgtgacataggatctgcttcctttaaatatgatatgcgtcgactcagtgaaattctggc B D Dog agctgtatgtgatatagggtctgcctcctttaaatatgatatgcgtcgactcagtgaaattctggc B D Hawaiian monk seal agctgtatgtgatatagggtctgcctcctttaaatatgatatgcgtcgactcagtgaaattctggc B D Hedgehog agctgtttgtgatattggctctgcctccttcaagtatgacatgcggcgactcagtgagattctggc B D Shrew agctgtttgtgacataggatctgcctcttttaaatatgatatgcgccgactcagtgaaattctggc B D Elephant agctgtttgtgatatagggtctgcctcctttaagtatgacatgcgccgactcagtgaaattctggc B D Tenrec agctgtttgtgatataggctctgcctcctttaaatatgacatgcgccgactcagtgaaattctggc B D Opossum agctgtgtgcgacatcggctctgcgtctttcaaatatgacatgcgccgactgagtgaaattctggc B D Chicken agctgtctgtgatataggatctgcatcttttaaatacgatatgcgtcgactcagtgagattctagc B D X. tropicalis agcggtgtgtgacatcggatctgcctctttcaaatatgatatgcgccgccttagtgagattctggc B D Zebrafish agccgtctgtgatattggttctgcatctttcaaatatgacatgaggcgtctgagtgagattcttgc B D Lamprey agccgtatgcgatatcggctccgcgtcattcaagtacgacatgcggcgtctgagcgagattctgga B D Tree shrew ================================================================== Inserts between block 44 and 45 in window B D Horse 1bp B D Opossum 1bp B D Chicken 1bp B D X. tropicalis 1bp Alignment block 45 of 590 in window, 37092738 - 37092738, 1 bps B D Mouse -a B D Rat -a GCF_003668045 -a Beaver -g B D Squirrel -a B D Guinea pig -a B D Rabbit -a B D Pika -a B D Human -a B D Chimp -a B D Bonobo -a B D Gorilla -a B D Rhesus -a B D Marmoset -a B D Tarsier -a B D Bushbaby -a B D Malayan flying lemur -a B D Pig -a B D Dolphin -a B D Cow -a B D Sheep -a B D Dog -a B D Hawaiian monk seal -a B D Hedgehog -a B D Shrew -c B D Elephant -a B D Tenrec -a B D Zebrafish -a B D Lamprey c- B D Horse == B D Opossum == B D Chinese pangolin -- B D Tree shrew == B D X. tropicalis == B D Chicken == Alignment block 46 of 590 in window, 37092739 - 37092814, 76 bps B D Mouse tttccaagagcctggtataggagaagtattgcaaggcgcctgttccttggagaccaaactgta---aact B D Rat tttccaagagcctggtataggagaagtattgcaaggcgcctgttccttggagaccaaactgta---aatt GCF_003668045 tttccaagagcctggtataggagaagtattgcaaggcgcctattccttggagaccaaactgta---aatt Beaver tttccaagggcgtggtataggagaagtattgcaagacgtctattccttggagaccaaactata---aatt B D Squirrel tttccaagagcctggtatagaagaagtattgcaagacgtctgtttcttggagatcaaacaata---aatt B D Guinea pig tttccaagagcctggtacagaagaagtattgcaagacgcctattccttggagaccaaactata---aatt B D Rabbit tttccaagagcctggtacaggagaagtattgcaagacgtttatttctcggagaccaaactata---aatt B D Pika tttccaagagcctggtacaggagaagtattgcaagacgtttgttccttggagaccaaactata---aatt B D Human tttccaagagcatggtatagaagaagtattgcaagacgtctattccttggagaccaaactata---aatt B D Chimp tttccaagagcatggtatagaagaagtattgcaagacgtctattccttggagaccaaactata---aatt B D Bonobo tttccaagagcatggtatagaagaagtattgcaagacgtctattccttggagaccaaactata---aatt B D Gorilla tttccaagagcatggtatagaagaagtattgcaagacgtctattccttggagaccaaactata---aatt B D Rhesus tttccaagagcatggtatagaagaagtattgcaagacgtctattccttggagaccaaactata---aatt B D Marmoset tttccaagagcatggtataggagaagtattgcaagacgtctattcctcggagaccaaactata---aatt B D Tarsier tttccaagagcatggtatagaagaagtattgcaagacgtctatttctcggagaccaaaccata---aatt B D Bushbaby tttccaagagcatggtataggagaagtattgcaagacgtctgttcctcggagaccaaactata---aatt B D Malayan flying lemur tttccaagagcctggtacaggagaagtattgcaaggcgtctattccttggagaccaaactata---aatt B D Pig tttccaagagcctggtacaggaggagtattgcaagacgcctattccttggagaccaaactata---aatt B D Dolphin tttccaagagcttggtataggaggagtattgcaagacgcctgttccttggagaccaaactata---aatt B D Cow tttccaagagcctggtataggaggagtattgcaagacgcctatttcttggagaccaaactatt---aatt B D Sheep tttccaagagcctggtataggaggagtattgcaagacgcctgttccttggagaccaaactatt---aatt B D Horse tttccaagagcctggtataggagaagtattgcaagacgcctattccttggagaccaaaccata---aatt B D Chinese pangolin tttccaagagcctggtatagaagaagtattgcaagacgcctattccttggagaccaaactata---aatt B D Dog tttccaagagcctggtataggagaagtatcgcaagacgactattccttggggaccaaactata---aact B D Hawaiian monk seal tttccaagagcctggtataggagaagtattgcaagacgcctattccttggagaccaaactata---aatt B D Hedgehog tttcccagagcctggtacaggaggagcatcgcaagacgcctgtttctcggagaccaaacaatc---aatc B D Shrew tttccaagagcctggtacaggaggagtatagcgagacgcctttttcttggagaccaaactata---aatt B D Elephant tttccaagagcctggtataggagaagtattgcaagacgccttttccttggagaccaaactata---aatt B D Tenrec tttccaagagcctggtacaggagaagtattgcaagacgccttttcctaggagaccaaactata---aatt B D Opossum tttcccagagcttggtacaggagaagtattgcccgccgcctttttcttggtgaccaaaccatc---aatc B D Chicken ttcccaagagcgtggtacaggagaagcattgctagacggcttttcctgggtgatcaaaccata---aatc B D X. tropicalis tttccaagggcatggtacagaagaagtatagctagacgtttgtttcttggtgatcaaaccatc---aatt B D Zebrafish ttcccgcgagcttggtaccgcagaagcatagcccggaggttgtttctgggagaccagacaatc---aact B D Lamprey ttccccaaggcgtggtatcgtcgtagcatcgcccgcagactcttcctgggcgaccagaccatcgctaaca B D Tree shrew ====================================================================== Mouse tgccaagta Rat tgccaagta GCF_003668045 tgccaagta Beaver tgccaagta Squirrel tgccaagta Guinea pig tgccaagta Rabbit tgccaagtg Pika tgccaagtg Human tgccaagta Chimp tgccaagta Bonobo tgccaagta Gorilla tgccaagta Rhesus tgccaagta Marmoset tgccaagta Tarsier tgccaagta Bushbaby tgccaagta Malayan flying lemur tgccaagta Pig tgccaagta Dolphin tgccaagta Cow tgccaagta Sheep tgccaagta Horse tgccaagta Chinese pangolin tgccaagta Dog tgccaagta Hawaiian monk seal tgccaagta Hedgehog tgccaagta Shrew tgccaagta Elephant tgccgagta Tenrec tgccaagta Opossum ttcctggta Chicken tgccaggta X. tropicalis tacctggta Zebrafish taccaggta Lamprey tgccaagta Tree shrew ========= Inserts between block 46 and 47 in window B D X. tropicalis 1118bp Alignment block 47 of 590 in window, 37092815 - 37092815, 1 bps B D Mouse a B D Rat a GCF_003668045 a Beaver a B D Squirrel a B D Guinea pig a B D Rabbit a B D Pika a B D Human a B D Chimp a B D Bonobo a B D Gorilla a B D Rhesus a B D Marmoset a B D Tarsier a B D Bushbaby a B D Malayan flying lemur a B D Pig a B D Dolphin a B D Cow a B D Sheep a B D Horse a B D Chinese pangolin a B D Dog a B D Hawaiian monk seal a B D Hedgehog a B D Shrew a B D Elephant a B D Tenrec a B D Opossum g B D Chicken g B D Zebrafish a B D Lamprey a B D Tree shrew = B D X. tropicalis = Inserts between block 47 and 48 in window B D Zebrafish 3116bp Alignment block 48 of 590 in window, 37092816 - 37092816, 1 bps B D Mouse g B D Rat g GCF_003668045 g Beaver g B D Squirrel g B D Guinea pig g B D Rabbit g B D Pika g B D Human g B D Chimp g B D Bonobo g B D Gorilla g B D Rhesus g B D Marmoset g B D Tarsier g B D Bushbaby g B D Malayan flying lemur g B D Pig g B D Dolphin g B D Cow g B D Sheep g B D Horse g B D Chinese pangolin g B D Dog g B D Hawaiian monk seal g B D Hedgehog g B D Shrew g B D Elephant g B D Tenrec g B D Opossum g B D Chicken g B D Lamprey g B D Tree shrew = B D Zebrafish = B D X. tropicalis = Inserts between block 48 and 49 in window B D Lamprey 927bp Alignment block 49 of 590 in window, 37092817 - 37092836, 20 bps B D Mouse ---------tgtgtta--------------tgtaaccata-att B D Rat ---------tgcgtta--------------tgtaaccata-att GCF_003668045 ---------cttgtta--------------t------------- Beaver ---------cttgcta--------------cataattata-att B D Squirrel ---------cttgttg--------------tgtggctata-att B D Guinea pig ---------catatca--------------tgtaattata-att B D Rabbit ---------cttctta--------------c------ata-att B D Pika ---------tttctta--------------t------ata-att B D Human ---------cttgtta--------------tgtaa--------- B D Chimp ---------cttgtta--------------tgtaa--------- B D Bonobo ---------cttgtta--------------tgtaa--------- B D Gorilla ---------cttgtta--------------tgtaa--------- B D Rhesus ---------cttgtta--------------tgtaa--------- B D Marmoset ---------cttgtta--------------tataa--------- B D Tarsier ---------cttgttaaataattataattttataa--------- B D Bushbaby ---------tttgtta--------------tgtaattaca-atc B D Malayan flying lemur ---------cttgttg--------------tgtaattata-att B D Pig ---------cttgttc--------------tgtaattgtaaatt B D Dolphin ---------cttgttta-------------tgtaattataaatt B D Cow ---------cttattta-------------tgtaattatagatt B D Sheep ---------cttgttta-------------tgtaattatagatt B D Horse ---------cttatta--------------tgtaattata-att B D Chinese pangolin ---------cttgtta--------------ttataagcta-att B D Dog ---------cttgttt--------------agtaattata-att B D Hawaiian monk seal ---------cttgtta--------------tgtaattgta-att B D Hedgehog ---------ctggctg--------------catgattatg-att B D Shrew ---------cttattg--------------tatagttata-att B D Elephant ---------tttatcg--------------tgtaattata-att B D Tenrec ---------ttga-----------------tgtaattata-gtt B D Opossum ---------ttgctt----------------------------- B D Chicken atactgctacttagca--------------cagaa--------- B D Tree shrew ============================================ B D Zebrafish ============================================ B D X. tropicalis ============================================ B D Lamprey ============================================ Inserts between block 49 and 50 in window B D Tenrec 206bp Alignment block 50 of 590 in window, 37092837 - 37092897, 61 bps B D Mouse aga------t-------------ttcttttcatttgggttaaagaa-----aac-aagatccatgattag B D Rat gga------t-------------ttcttttcatctgggttaaagaa-----aac-aagatccatgattaa GCF_003668045 ---------t-------------gtactttaattagggttaaagta-----aac-aagatccataattga Beaver aggt-----t-------------actttttaattttgtttatattag---tagc-aagttccataattga B D Squirrel agg------t-------------tgcttttaattttggttataatag---tagt-aagacccatccttga B D Guinea pig agg------t-------------tgcttttaatttagttaaaat-------agc-aggatctatggctga B D Rabbit agt------t-------------tgcttttaattttgct--taatag---tggc-aagatccatgattga B D Pika atg------t-------------tgcttttagtgttggttgtaagaa---tagc-aagatccatgattga B D Human --------------------------ttttaattttggttactgtag---cagc-aagacctacaattga B D Chimp --------------------------ttttaattttggttactgtag---cagc-aagacctacaattga B D Bonobo --------------------------ttttaattttggttactgtag---cagc-aagacctacaattga B D Gorilla --------------------------ttttaattttggttactgtag---cagc-aagacctacaattga B D Rhesus --------------------------ttttaattttggttacagtag---cagc-aagacctacaattga B D Marmoset --------------------------ttttaattttggttacagtag---cagc-aagacctacaattga B D Tarsier --------------------------ttttaattttgtttacaatgg---gagc-aagatcc-------- B D Bushbaby agg--------------------tgctttaaattttggttccagtag---taac-aaaatccatgactga B D Malayan flying lemur ggg------t-------------tgcttttaattttggttgcaatag---tagc-aagatccatgattga B D Pig atacttatgt-------------tgcttttaattttggttataacag---tagc-aagatccatgatg-- B D Dolphin atacttaggc-------------tgcttttcattttgattacaatag---taac-aagatccatgattga B D Cow atacttaggc-------------tgcttttaattttgattacaataa---taat-aagatccatgattga B D Sheep atacttaggc-------------tgcttttaattttgattacaataa---taat-aatatccatgattga B D Horse atacttaagcatatacttaattatgcttttaattttggttacaacag---taac-aggatccatgattga B D Chinese pangolin atatttgggt-------------tgctttaaattttggttacaatag---taactagaatctatgattca B D Dog atacttaggt-------------tacctttagttttggttacggtag---taacaaaaac---------- B D Hawaiian monk seal atacttacgt-------------tacttttaattttggttacagtag---taacaggaatcaatgattga B D Hedgehog ctactgaggc------------acagttacagtcttgttcac-atgg---tgac-cagatccacagtggg B D Shrew --------ac------------actgttgctttctagtttataatag---taac-agcattt---gataa B D Elephant ------aggt-------------tgctgttaattttggttataatgg---taac-aagattcatgattta B D Opossum ------------------------gctttaacttttaattacattaaatttaag-agagtctgtgtggca B D Chicken ------------------------------agccttctt-----------gtgc-aaga-----ggttaa B D Tenrec ====================================================================== B D Tree shrew ====================================================================== B D Zebrafish ====================================================================== B D X. tropicalis ====================================================================== B D Lamprey ====================================================================== Mouse taacacaatttttg---------t-t Rat taacccaaattttgacttactttg-t GCF_003668045 tagcacacattttgacttactttg-- Beaver tagcaaaaattttatcttactttg-t Squirrel tgatagaaactttgttctccttgg-t Guinea pig tagtataaattttgtctttcttga-t Rabbit taacacaa------------------ Pika taatacaa------------------ Human taacacaaacgtgatcttacttgg-c Chimp taacacaaacgtgatcttacttgg-c Bonobo taacacaaacgtgatcttacttgg-c Gorilla taacacaaacgtgatcttacttgg-c Rhesus taacacaaacgtgatcttacttgg-t Marmoset taacacaaacttgatcttacttgg-t Tarsier --acacaaacttgatcttgctcag-t Bushbaby taacataaacttggtcttacttgatt Malayan flying lemur taataaaaattttgtcttacttgg-t Pig -------------------------- Dolphin taacacaaactttgtc---------- Cow taacacaaactttgtc---------- Sheep taacacaaactttgtc---------- Horse taacactaact--gtc---------- Chinese pangolin taacacaaacttcatc---------- Dog -------------------------- Hawaiian monk seal taccacaaactttgtt---------- Hedgehog cacagtgggtcttact---------- Shrew caaacttagtcctgtt---------- Elephant ta--acagactttctcttacttgg-t Opossum tagtgtatgtc--------------- Chicken cagtaggaattgtata---------- Tenrec ========================== Tree shrew ========================== Zebrafish ========================== X. tropicalis ========================== Lamprey ========================== Inserts between block 50 and 51 in window B D Pig 3bp B D Dolphin 9bp B D Cow 9bp B D Sheep 9bp B D Horse 9bp B D Chinese pangolin 10bp B D Hawaiian monk seal 428bp B D Hedgehog 1bp B D Shrew 3bp Alignment block 51 of 590 in window, 37092898 - 37092970, 73 bps B D Mouse aatc------------------tataccatgtgattcat-tcatttgttcaaaagaatgtctgt------ B D Rat aagc------------------tataccatgtaattcat-tcatttgttcaaaagaatgtctat------ GCF_003668045 -----------------------atactgtgtaattcat-tcatttgttctaaagaatgtctac------ Beaver aagt------------------tataccacgtgattcat-tcactcattcaaaa-aatgtct-------- B D Squirrel aaat------------------tgtaccatgtgatacag-tcaggcattcgaaa-accatctgt------ B D Guinea pig aaat------------------tgtactacatgattcat-tcagtcattcgtaa---------------- B D Rabbit --------------------------------aattttt-ttacttggttaa------------------ B D Pika --------------------------------ggttgtt-tcacttggttag------------------ B D Human aggg------------------tgtaccatgtgatgcgt-tcagtcattcaaga-aatgtccat------ B D Chimp aggg------------------tgtaccatgtgatgcgt-tcagtcattcaaga-aatgtccat------ B D Bonobo aggg------------------tgtaccatgtgatgcgt-tcagtcattcaaga-aatgtccat------ B D Gorilla aggg------------------tgtaccatgtgatgcgt-tcagtcattcaaga-aatgtccat------ B D Rhesus aggg------------------tgtatcatgtgacgcat-tcagtcattcaaga-aatgtccat------ B D Marmoset aggg------------------tataccatgtgatacat-tcagtcattccag--aatgtccac------ B D Tarsier aagt------------------agtaccatatgattcat-tcattcatttaaga-aatgtctgt------ B D Bushbaby aagt------------------tgcaccatgtgactcat-tcacttatttaaaa-attgtctat------ B D Malay