Multiz Alignments of 60 Vertebrates

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Capitalize exons based on show bases

Place cursor over species for alignment detail. Click on 'B' to link to browser for aligned species, click on 'D' to get DNA for aligned species.
Alignment block 1 of 47 in window, 37091960 - 37092049, 90 bps B D Mouse caga-cctcatattagctta-----gtgcccaccgcatat-cctctgcagataaacttggaccataaat- B D Rat caga-cctcatattagctta-----gtgcccactgcatat-cctctgcaaataaacttggaccataaat- B D Kangaroo rat caga-cctcatatcagctta-----gtaccctctgcatat-ccacttcaaatgaacctggactataaat- B D Naked mole-rat cagg-cctcatattagctta-----gtgccctctgtatac-ccatttcaaatgaatttggaatataaat- B D Guinea pig cagg-cctcatattagctta-----gtgccttctgcatat-ccatttcaaatgaattcag-atacaaat- B D Squirrel caga-cctcatattagttta-----gtacccgctgcatat-ccacctcaagtgaacttggaatataaat- B D Rabbit caga-cctcacattagctta-----gtaccttctgcgtat-ccacttcaaatgaacttggattataaat- B D Human caga-cctcatattagttta-----gtaccctctgcatat-ccccttcaaatgaacttggaatataaat- B D Chimp caga-cctcatattagttta-----gtaccctctgcatat-ccccttcaaatgaacttggaatataaat- B D Gorilla caga-cctcatattagttta-----gtaccctctgcatat-ccccttcaaatgaacttggaatataaat- B D Orangutan caga-cctcatattagttta-----gtaccctctgcatat-ccacttcaaatgaacttggaatataaat- B D Gibbon caga-cctcatattagttta-----gtaccttctgcttat-ccacttcaaatgaacttggaatataaat- B D Rhesus caga-cctcatattagttta-----gtaccctctgcatat-ccacttcagatgaacttggaatacaaat- B D Baboon caga-cctcatattagttta-----gtaccctctgcatat-ccacttcagatgaacttggaatacaaat- B D Marmoset taga-cctcatattagttta-----gtaccctctgcatat-ccacttcaaatgaacttgggatataaat- B D Squirrel monkey caga-ccacatattagttta-----gtaccttctgcatat-ccgcttcaaatgaacttggaatataaat- B D Tarsier caga-cctaatattagttta-----gtaccctctgcattt-ccccttcaagtgaacttggaatgcaaat- B D Mouse lemur taga-cctcatattagttta-----gtaccctgtgcatgt-ccacttcaaataaacttggaatataaat- B D Bushbaby taga-cctcatattagttta-----gtaccctgtgcatat-ccacttcagataaacttggaatataaat- B D Tree shrew cagaccctcatattagttta-----gtaccctctgcatatcccacttcaaacaaacttggaatacagatc B D Pig caga-cctcatattagttta-----gtaccttctgcgtat-caattgcaaacaaacttggaatataaat- B D Alpaca caaa-cctcatattagttta-----gtaccttctgcatat-ccacttcaaacaaacttggaatataaat- B D Dolphin caga-cctcatattagttta-----gtaccgtctgcatat-ccatgtcaaacaaacttggaatataaat- B D Sheep caga-cctcatattagttta-----gtaccttctgcatat-ccatttcaaacaaacttggaatataagt- B D Cow caga-cctcatattagttta-----gtaccttctgcatat-ccatttcaaacaaacttggaatataaat- B D Cat caga-cctcatgttagttta-----gtaccttctgcatat-ccacttcaaacaaacttggaatataaat- B D Dog caga-cctcatgttagttta-----gtaccttctgcatat-ccactgcaaacaaacttggaatataaat- B D Panda caga-cctcatgttagttta-----gtaccttctgcatat-ccacttcaaacaaacttggaatataaaa- B D Horse cagg-cctcatattagttta-----gtaccttctgcatat-tcacttcagacaaacttggagtataaat- D Little brown bat ccga-cctcacattagctta-----gtgccctctgcattt-ctgcttcaaacggacgtggactataggt- B D Megabat ccga-cctcagattagttta-----gtaccctctgcgtat-ctacttcagacagacttggaatatagat- B D Hedgehog caga-cctcacatcagttta-----gttccctctgcatat-tctctccaaacaagcctggagtctaaat- B D Shrew cagg-cctcaaattagttta-----gttccttctgtatat-tctcttcaaacaaactcagagtataaat- B D Elephant caga-cctcatattagttta-----gtaccatcagcattt-ccacgtcaaacgaacttggaatataaat- B D Rock hyrax caga-cctcataggagtttagatatgcacgtcctgcatat-ttacttcaaatagtcttggaatgtaact- B D Tenrec taga-cctcacattagttta-----gtaccatctgcgtat-ccacttcaaacaaacttggaatataaat- B D Manatee caga-cctcatattagtttg-----gtaccatctgcgtat-ccacttcaaatgaacttggaatataaat- B D Armadillo taga-cctaatattagttta-----gtaccttatgcatat-ccacttcaaatgaacttggaatataaat- B D Sloth caga-cctcacattagttta-----gtaccttctgcattt-ccacttcaaatgaacttggaatataaat- B D Opossum taga-cctaacattagttta-----gtgccatctgtgtat-ccgcttctgacagacttggagtataagt- B D Tasmanian devil taga-cctaacattagcttg-----gtaccatctgtatat-ccacttctgacagacttggaatataaat- B D Wallaby taga-cctaacattagctta-----ataccaactgtgtat-ccgcttctgacagacttggaatgtaaat- B D Platypus caga-cctcatattagtttg-----gttccttctacatat-tcatgcaacatcgaattggaatacaaat- B D Turkey caga-tcatttacttacttg-----gtgaacaccgtacaa-ccagttcaagtgaatgtgaaacagaggt- B D Chicken caga-tcatttacttacttg-----gtgaacactgtacaa-ccaattcaagtgaacgtgaaacagaggt- B D Zebra finch taga-tctcatatttacttg-----gtgaaggctgcacta-ctaatccaaacagatctgaaccagtggt- B D Budgerigar caga-tctcatacatacttg-----gtgaatgctgcacac-ccagttcaaacacactttaaacagacat- B D Lizard taga-cctcacattagtttg-----gtagctgctgctttt-cctgtacaaatagatttggaacacagat- B D Painted turtle caga-cctcatattagtttg-----gtgactgctacacat-ccagttcagatagacttggagcacagat- B D X. tropicalis caga-ccttacataagcatc-----gtcagttctacacat-cagactaacatggatcctgttaatcgat- B D Coelacanth taga-cctcatattagcctg-----gtatcatctgtgtgt-ccagtccagacagattctgcaccaagca- B D Tetraodon cagg-tcccacctcagcctg-----gcgccccaggtgg---ccgccagcagctctgaagaggcccagcc- B D Fugu gagg-cctcacatcagcctc-----gtgcctcaggtgg---ccaccagcacctccgaggtggccctggt- B D Nile tilapia gagg-cctcacattagcctg-----gtgccatctgtgg---cttccagccgtgcaggcggtaaccagct- B D Stickleback gacg-ccccacatcagcctg-----gttcccgccgtgg---cctccaacacctccgacaggggccagtt- B D Zebrafish ccga-ccgcacatcagcctg-----gtgtcttcagccatt-cctccagacacacggcagacacagaagt- Mouse cactcagtt--tgaattgggcacaagggga Rat cactcagtt--tgaattgggcacaagggga Kangaroo rat ccctgagca--tgaattgggcgcaaggaga Naked mole-rat ctctgagta--tgaactgggcacaagggga Guinea pig cgctgagta--tgaattgggcacaagggga Squirrel ccctgagta--tgaattgggcacaagggga Rabbit tcctgagtc--tgaattgggcacaagggga Human ttctgagtc--tgaattgggcacaaggaga Chimp ttctgagtc--tgaattgggcacaaggaga Gorilla ttctgagtc--tgaattgggcacaaggaga Orangutan ttttgagtc--tgaattgggcacaaggaga Gibbon ttctgagtc--tgaattgggcacaaggaga Rhesus ttctgagtc--tgaattgggcacaaggaga Baboon ttctgagtc--tgaattgggcacaaggaga Marmoset ttctgagtc--tgaattgggcacaaggaga Squirrel monkey ttctgagtc--tgaattgggcacaaggaga Tarsier ccctgagtc--tgaactgggcacaagggga Mouse lemur ccctgagtc--tgaattgggcacaagggga Bushbaby ccctgagtc--tgaattgggcacaagggga Tree shrew ccctgagtc--tgaattgggcacagggaga Pig ccctgagtg--tgaattgggcacaagggga Alpaca tcctgagtc--taaattgggcacaaggaga Dolphin tcctgagtc--tgaattgggcacaagggga Sheep tcctgagtc--tgaattgggcacaagggga Cow tcctgagtc--tgaattgggcacaagggga Cat ccctgagtc--tgaattgggcacaggggga Dog ccttgagtc--tgaattgggcacaggggga Panda ccctgagtc--tgaattgggcacaggggga Horse ccctaagtc--taaattgggcacaagggga Little brown bat ccttgagtc--tgaactgggcacaagggga Megabat ccttgagtc--tgaattgggcacaagggga Hedgehog ccctgagtc--tgaactgggcacaagggga Shrew ccctgagtt--tgaactgggcacaagggga Elephant ccctgagtc--tgaattgggcacaagggga Rock hyrax ccttgagtc--taaatc--------agagg Tenrec ccctgagtc--taaattgggcacaaggaga Manatee ccctgagtc--tgaattgggcccaagggga Armadillo ccctgagtc--tgaattgggcacaagggga Sloth ccctgagtc--tcaattgggcacaagggga Opossum ccctgagtc--tgaattgggcccaagggga Tasmanian devil ccctgagtc--tgaattgggcacaagggga Wallaby ccctgagtc--tgaattgggcacaagggga Platypus caattagtc--tgaattggacccaagggga Turkey ctcttagtt--tgaattggatgttgtcaga Chicken ctcttagtt--tgaattggacattgtcaga Zebra finch cacttagtt--tgaattggacattgtcaga Budgerigar ctcttagct--tgaattggtcattgtcaga Lizard ctcttagct--tgaattggtcccaaggaga Painted turtle ctcttagta--tgaattggtcacaagggga X. tropicalis cactgagtc--tgaattggtcacaaggtga Coelacanth ccctcagcc--tgaattggtctcaggggga Tetraodon cacccagtccgtcaactggagcgaagggga Fugu cactcagtcggtcaactggagcgaaggaga Nile tilapia gacctacggtatcaactggagcgagggaga Stickleback caccctcggtatcaactggagcgaaggaga Zebrafish tcctcagcc--tcaactggagccacgaaga Inserts between block 1 and 2 in window B D Guinea pig 814bp Alignment block 2 of 47 in window, 37092050 - 37092065, 16 bps B D Mouse caattctttggagatt B D Rat caattctttggagatt B D Kangaroo rat catttctctggaaatc B D Naked mole-rat ccttgctctggagatt B D Squirrel catttctttggagatt B D Rabbit catttctctggagatc B D Human tgtttctttggagatt B D Chimp tgtttctttggagatt B D Gorilla tgtttctttggagatt B D Orangutan tgtttctttggagatt B D Gibbon tgtttctttggagatt B D Rhesus tgtttctttggagatt B D Baboon tgtttctttggagatt B D Marmoset tgtttctttggagatc B D Squirrel monkey tgtttctttggaggtt B D Tarsier taattctttggagatt B D Mouse lemur tatttctttggagatt B D Bushbaby tatttctttggagatt B D Tree shrew tatttctttggaaatt B D Pig catttctttggagatt B D Alpaca catttctttagaaatt B D Dolphin catttctttggagatt B D Sheep catttctttggagatt B D Cow catttctttggagatt B D Cat catttctttggagatt B D Dog catttctttggagatt B D Panda catttctttggagatt B D Horse catttctttggagatt D Little brown bat catttcactggagatt B D Megabat catttctttggagatt B D Hedgehog tatctctctggagatc B D Shrew catttctttggagatt B D Elephant catttctttggagatt B D Rock hyrax catatttttggagatt B D Tenrec tgtttctttggagatt B D Manatee cgtttctttggagatt B D Armadillo catttctttggagatt B D Sloth catttctttggagatt B D Opossum catttctttggaaatt B D Tasmanian devil catttctttggaaatt B D Wallaby catttctttggaaatt B D Platypus tatttctttggaaatt B D Turkey tgtgcagctggaggtt B D Chicken tgtgcagctggaggtt B D Zebra finch tgcatctctggaggtt B D Budgerigar tgtatcactggaggtc B D Lizard cttatcattggaagtg B D Painted turtle cacttcattagaagtt B D X. tropicalis tgcttgtgtggaagtt B D Coelacanth cagtttactggaagtt B D Tetraodon cggctccatcgagata B D Fugu cggctccatcgagata B D Nile tilapia cagctccctggaggtt B D Stickleback cagctccctggaggtg B D Zebrafish cctcactctggagatg B D Guinea pig ================ Inserts between block 2 and 3 in window B D Rock hyrax 168bp Alignment block 3 of 47 in window, 37092066 - 37092106, 41 bps B D Mouse gtggatggcctaaatgggaagattactgaaaggttag-aat--t B D Rat gtggatggcctaagtgggaagatcactgaaaggttag-aat--t B D Kangaroo rat gtggatggcttgagtgggaagatcactgaaaggttag-aat--t B D Naked mole-rat gtggatggcctaaatgggaaaatcactgaaaggtaag-aat--t B D Squirrel gtcgatggcctaagtgggaagatcactgaaaggttag-aat--t B D Rabbit gtggatggcctaagtgggaagattacagaaaggttag-gat--c B D Human gtggatggcctgagtgggaagatcactgaaaggttaa-aat--t B D Chimp gtggatggcctgagtgggaagatcactgaaaggttaa-aat--t B D Gorilla gtggatggcctgagtgggaagatcactgaaaggttaa-aat--t B D Orangutan gtggatggcctgagtgggaagatcactaaaaggttaa-aat--t B D Gibbon gtggatggcctgagtgggaagatcactgaaaggttaa-aat--t B D Rhesus gtggatggcctgagtgggaagatcactgaaaggttaa-aat--t B D Baboon gtggatggcctgagtgggaagatcactgaaaggttaa-aat--t B D Marmoset gtggatggcctgaatgggaagatcactgaaaggttaa-aat--t B D Squirrel monkey gtggatggcctgagtgggaagatcactgaaaggttaa-aat--t B D Tarsier gtggatggcctaagtgggatggtcactgaaaggttag-agt--t B D Mouse lemur gtggatggcctaagtgggaagatcactgaaaggttag-aat--t B D Bushbaby gtggatggcctaagtggaaagatcactgaaaggttag-agt--t B D Tree shrew gtggatggactaagtggaaagatcactgaaaggttag-aat--t B D Pig gtggatggcctaagtggaaagatcactgaaaggtgag-ctt--t B D Alpaca gtggatggcctaagtgggaagatcactgaaaggttag-cat--t B D Dolphin gtggatggcctaactgggaagaccaccgaaaggttag-tgt--c B D Sheep gtggatggcctaagtggaaagattacagaaaggttag-cat--t B D Cow gtggatggcctaagtggaaagatcacggaaaggttag-cat--t B D Cat gtggatggcctaagtggaaagatcactgaaaggttag-cat--t B D Dog gtggatggcctgagtggaaagatcactgaaaggttag-cat--t B D Panda gtggatggcctaagtggaaaaatcactgaaaggttag-cat--t B D Horse gtggatggcctaagtgggaagatcactaaaaggttag-cat--t D Little brown bat gtggatggccaaagtgggaagatcactgaaaggttag-cat--a B D Megabat gtggatggcctcagtgggaagatcactgaaaggttag-cat--a B D Hedgehog gtggatggtctaagtgggaagatcactgaaaggttag-cat--t B D Shrew gtggatggtctaagtgggaagatcactgaaaggtcag-tat--t B D Elephant gtggatggtctaagtggaaagatcactgaaaggttag-aat--t B D Tenrec gtggatggtctaagtggaaagatcactgaaaggttag-ata--t B D Manatee gtggatggtctaagtggaaagatcactgaaaggttag-aat--t B D Armadillo gtggatggcctaagtggaaagatcactgaaaggttag-aat--g B D Sloth gtggatggcctaagtggaaagatcactgaaaggttag-aat--t B D Opossum gtagatggaataaatggaaaaatcactgaaaggtgag-aat-gt B D Tasmanian devil gtagatggaataaatggaaaaatcaccgaaaggtaag-aat--c B D Wallaby gtagatggaataaatggaaaaatcactgagaggtgag-aat--c B D Platypus gttgatggagccagtgggaagatcacagaaaggttag-gaa--t B D Turkey gtggatgggctaaatggaaaagtcactgaaaggtcagattt--- B D Chicken gtggatgggctaaatggaaaagtcactgaaaggtcagattt--- B D Zebra finch gtggatggattaagtgggaaaacgactgaaaggtcag-cat--- B D Budgerigar gtggatgggttacatggaaaagtcactgaaaggttag-aat--- B D Lizard gtagacgggctaactgggaagagcacagaaaggtaaa-tgt--- B D Painted turtle gtggatggtttcaatgggaaaatcactgaaaggttag-aatc-- B D X. tropicalis gtggatgctgtaagaggaaaaactgttgaaaggtgag-att--t B D Coelacanth gtggatgggcataaaggcaagatcattgaaaggttag-tct--t B D Tetraodon gtggatggcctgaagggaaagacggtggaagagtaag-aac--g B D Fugu gtggacggactggagggaaagaccatggaagggtatg-aat--g B D Nile tilapia gtggatggtctggagggcaagaccatagaggagtaag-aat--c B D Stickleback gtcgacggcctggcgggaagggccgttgagcagtaag-gat--c B D Zebrafish gtggacgctctggagggaaaatccacagaagagtgag-taa--a B D Guinea pig ============================================ B D Rock hyrax ============================================ Inserts between block 3 and 4 in window B D Lizard 440bp B D X. tropicalis 6bp Alignment block 4 of 47 in window, 37092107 - 37092107, 1 bps B D Mouse a B D Rat a B D Kangaroo rat g B D Naked mole-rat a B D Squirrel a B D Rabbit a B D Human a B D Chimp a B D Gorilla a B D Orangutan a B D Gibbon a B D Rhesus a B D Baboon a B D Marmoset a B D Squirrel monkey a B D Tarsier a B D Mouse lemur a B D Bushbaby a B D Tree shrew a B D Pig a B D Alpaca a B D Dolphin a B D Sheep a B D Cow a B D Cat t B D Dog a B D Panda a B D Horse a D Little brown bat a B D Megabat a B D Hedgehog t B D Shrew g B D Elephant a B D Tenrec a B D Manatee a B D Armadillo a B D Sloth a B D Opossum t B D Tasmanian devil a B D Wallaby t B D Platypus t B D X. tropicalis g B D Coelacanth a B D Tetraodon g B D Fugu a B D Nile tilapia a B D Stickleback a B D Zebrafish c B D Guinea pig = B D Rock hyrax = B D Lizard = B D Budgerigar - B D Zebra finch - B D Chicken - B D Painted turtle - B D Turkey - Inserts between block 4 and 5 in window B D Zebrafish 1bp Alignment block 5 of 47 in window, 37092108 - 37092109, 2 bps B D Mouse ct B D Rat ct B D Kangaroo rat tt B D Naked mole-rat ct B D Squirrel ca B D Rabbit ct B D Human ct B D Chimp ct B D Gorilla ct B D Orangutan ct B D Gibbon ct B D Rhesus ct B D Baboon ct B D Marmoset gt B D Squirrel monkey ct B D Tarsier ct B D Mouse lemur tt B D Bushbaby ct B D Tree shrew tg B D Pig ct B D Alpaca ct B D Dolphin ct B D Sheep ct B D Cow ct B D Cat ct B D Dog ct B D Panda ct B D Horse ct D Little brown bat tt B D Megabat ct B D Hedgehog ct B D Shrew ct B D Elephant ct B D Tenrec tt B D Manatee ct B D Armadillo ct B D Sloth ct B D Opossum tt B D Tasmanian devil tt B D Wallaby tt B D Platypus t- B D Turkey -t B D Chicken -t B D Zebra finch -t B D Budgerigar -t B D Painted turtle tt B D X. tropicalis tt B D Coelacanth tc B D Tetraodon ct B D Nile tilapia ct B D Stickleback ct B D Zebrafish c- B D Guinea pig == B D Rock hyrax == B D Lizard == Inserts between block 5 and 6 in window B D Hedgehog 276bp B D Shrew 1bp B D X. tropicalis 2bp Alignment block 6 of 47 in window, 37092110 - 37092110, 1 bps B D Mouse a B D Rat a B D Kangaroo rat a B D Naked mole-rat g B D Squirrel a B D Rabbit g B D Human a B D Chimp a B D Gorilla a B D Orangutan a B D Gibbon a B D Rhesus a B D Baboon a B D Marmoset a B D Squirrel monkey a B D Tarsier a B D Mouse lemur a B D Bushbaby a B D Tree shrew a B D Pig c B D Alpaca a B D Dolphin a B D Sheep g B D Cow a B D Cat a B D Dog a B D Panda a B D Horse a D Little brown bat c B D Megabat a B D Shrew a B D Elephant a B D Tenrec a B D Manatee a B D Armadillo a B D Sloth a B D Opossum g B D Tasmanian devil a B D Wallaby a B D Coelacanth a B D Zebrafish a B D Guinea pig = B D Hedgehog = B D Rock hyrax = B D Lizard = B D Budgerigar - B D Platypus - B D Zebra finch - B D Chicken - B D X. tropicalis = B D Painted turtle - B D Turkey - Inserts between block 6 and 7 in window B D Coelacanth 8726bp Alignment block 7 of 47 in window, 37092111 - 37092113, 3 bps B D Mouse ctc B D Rat ctt B D Kangaroo rat att B D Naked mole-rat att B D Squirrel att B D Rabbit ttt B D Human att B D Chimp att B D Gorilla att B D Orangutan att B D Gibbon att B D Rhesus att B D Baboon att B D Marmoset att B D Squirrel monkey att B D Tarsier att B D Mouse lemur att B D Bushbaby att B D Tree shrew att B D Pig att B D Alpaca att B D Dolphin att B D Sheep att B D Cow att B D Cat att B D Dog att B D Panda att B D Horse att D Little brown bat att B D Megabat ttt B D Shrew att B D Elephant att B D Tenrec act B D Manatee att B D Armadillo att B D Sloth att B D Opossum att B D Tasmanian devil att B D Wallaby att B D Turkey -tt B D Chicken -tt B D Zebra finch -ta B D Budgerigar -tt B D Painted turtle -ta B D X. tropicalis att B D Zebrafish atc B D Guinea pig === B D Hedgehog === B D Rock hyrax === B D Lizard === B D Platypus --- B D Coelacanth === Inserts between block 7 and 8 in window B D Turkey 4bp B D Chicken 4bp B D Zebra finch 4bp B D Budgerigar 553bp B D Painted turtle 3bp B D X. tropicalis 1bp Alignment block 8 of 47 in window, 37092114 - 37092118, 5 bps B D Mouse ----tctct B D Rat ----tctct B D Kangaroo rat ----tc--- B D Naked mole-rat ----tatt- B D Squirrel ----tttt- B D Rabbit ----ttttt B D Human ----tcttt B D Chimp ----tcttt B D Gorilla ----tcttt B D Orangutan ----tcttt B D Gibbon ----tcttt B D Rhesus ----tcttt B D Baboon ----tcttt B D Marmoset ----tattt B D Squirrel monkey ----tattt B D Tarsier ----tcttt B D Mouse lemur ----tcttt B D Bushbaby ----tcttt B D Tree shrew ----tcctt B D Pig ----tcttc B D Alpaca ----tcttt B D Dolphin ----tcttc B D Sheep ----tcttc B D Cow ----tcttc B D Cat ----tcttt B D Dog ----tcttt B D Panda ----tcttt B D Horse ----tcttt D Little brown bat ----tcttc B D Megabat ----tattt B D Shrew ----ccct- B D Elephant ----t---- B D Tenrec ----tcttt B D Manatee ----tcttt B D Armadillo ----tcttt B D Sloth ----tcttt B D Opossum ----ttttc B D Tasmanian devil ----tctcc B D Wallaby ----tctta B D Turkey ----tattc B D Chicken ----tattc B D Zebra finch ----cattt B D Painted turtle ----tgtgt B D X. tropicalis ----gctgc B D Zebrafish tgcat---- B D Guinea pig ========= B D Hedgehog ========= B D Rock hyrax ========= B D Lizard ========= B D Budgerigar ========= B D Platypus --------- B D Coelacanth ========= Inserts between block 8 and 9 in window B D Cat 2bp B D Dog 43bp B D Panda 145bp B D Horse 13bp D Little brown bat 2bp B D Megabat 2bp B D Manatee 1bp B D Armadillo 1bp B D Sloth 1bp B D Opossum 1bp B D Tasmanian devil 1bp B D Wallaby 1bp B D Turkey 3bp B D Chicken 3bp B D Zebra finch 375bp B D Painted turtle 2bp B D X. tropicalis 2bp Alignment block 9 of 47 in window, 37092119 - 37092120, 2 bps B D Mouse ta B D Rat aa B D Squirrel -a B D Rabbit t- B D Zebrafish ta B D Pig -- B D Manatee == B D Elephant -- B D Guinea pig == B D Cow -- B D Rhesus -- B D Horse == B D Panda == B D Bushbaby -- B D Dog == B D Gibbon -- B D Orangutan -- B D Gorilla -- B D Chimp -- B D Human -- B D Naked mole-rat -- B D Squirrel monkey -- B D Marmoset -- B D Sheep -- B D Alpaca -- D Little brown bat == B D Dolphin -- B D Megabat == B D Shrew -- B D Armadillo == B D Sloth == B D Hedgehog == B D Tarsier -- B D Mouse lemur -- B D Wallaby == B D Cat == B D Kangaroo rat -- B D Rock hyrax == B D Opossum == B D Lizard == B D Tree shrew -- B D Budgerigar == B D Tasmanian devil == B D Platypus -- B D Zebra finch == B D Baboon -- B D Chicken == B D X. tropicalis == B D Coelacanth == B D Painted turtle == B D Turkey == Alignment block 10 of 47 in window, 37092121 - 37092123, 3 bps B D Mouse aaa- B D Rat tac- B D Kangaroo rat gac- B D Naked mole-rat taa- B D Squirrel aaa- B D Tarsier -aa- B D Mouse lemur -aa- B D Bushbaby -aa- B D Tree shrew -aa- B D Painted turtle aaa- B D X. tropicalis taa- B D Zebrafish -agg B D Pig ---- B D Manatee ==== B D Rabbit ---- B D Elephant ---- B D Guinea pig ==== B D Cow ---- B D Rhesus ---- B D Horse ==== B D Panda ==== B D Dog ==== B D Gibbon ---- B D Orangutan ---- B D Gorilla ---- B D Chimp ---- B D Human ---- B D Squirrel monkey ---- B D Marmoset ---- B D Sheep ---- B D Alpaca ---- D Little brown bat ==== B D Dolphin ---- B D Megabat ==== B D Shrew ---- B D Armadillo ==== B D Sloth ==== B D Hedgehog ==== B D Wallaby ==== B D Cat ==== B D Rock hyrax ==== B D Opossum ==== B D Lizard ==== B D Budgerigar ==== B D Tasmanian devil ==== B D Platypus ---- B D Zebra finch ==== B D Baboon ---- B D Chicken ==== B D Coelacanth ==== B D Turkey ==== Inserts between block 10 and 11 in window B D Painted turtle 9662bp B D X. tropicalis 2bp Alignment block 11 of 47 in window, 37092124 - 37092124, 1 bps B D Mouse a B D Rat a B D Kangaroo rat a B D Naked mole-rat a B D Squirrel a B D Rabbit a B D Human a B D Chimp a B D Gorilla a B D Orangutan a B D Gibbon a B D Rhesus a B D Baboon a B D Marmoset a B D Squirrel monkey a B D Tarsier a B D Mouse lemur a B D Bushbaby a B D Tree shrew a B D Cat a B D Panda a D Little brown bat a B D Megabat a B D Platypus a B D Turkey a B D Chicken a B D X. tropicalis a B D Zebrafish a B D Pig - B D Manatee = B D Elephant - B D Guinea pig = B D Cow - B D Horse = B D Dog = B D Sheep - B D Alpaca - B D Dolphin - B D Shrew - B D Armadillo = B D Sloth = B D Hedgehog = B D Wallaby = B D Rock hyrax = B D Opossum = B D Lizard = B D Budgerigar = B D Tasmanian devil = B D Zebra finch = B D Coelacanth = B D Painted turtle = Inserts between block 11 and 12 in window B D Zebrafish 1093bp Alignment block 12 of 47 in window, 37092125 - 37092129, 5 bps B D Mouse aacat B D Rat tacat B D Kangaroo rat aat-- B D Naked mole-rat aat-- B D Squirrel aat-- B D Rabbit aat-- B D Human aac-- B D Chimp aac-- B D Gorilla aac-- B D Orangutan aac-- B D Gibbon aac-- B D Rhesus aac-- B D Baboon aac-- B D Marmoset aac-- B D Squirrel monkey aac-- B D Tarsier aac-- B D Mouse lemur aat-- B D Bushbaby aat-- B D Tree shrew agt-- B D Cat aac-- B D Panda aaa-- D Little brown bat aac-- B D Megabat aat-- B D Platypus aat-- B D Turkey cat-- B D Chicken cat-- B D X. tropicalis aat-- B D Pig ----- B D Manatee ===== B D Elephant ----- B D Guinea pig ===== B D Cow ----- B D Horse ===== B D Dog ===== B D Sheep ----- B D Alpaca ----- B D Dolphin ----- B D Shrew ----- B D Armadillo ===== B D Sloth ===== B D Hedgehog ===== B D Wallaby ===== B D Rock hyrax ===== B D Opossum ===== B D Lizard ===== B D Budgerigar ===== B D Tasmanian devil ===== B D Zebrafish ===== B D Zebra finch ===== B D Coelacanth ===== B D Painted turtle ===== Inserts between block 12 and 13 in window B D Cat 1212bp B D Panda 169bp D Little brown bat 5bp B D Megabat 7bp B D Platypus 2bp Alignment block 13 of 47 in window, 37092130 - 37092133, 4 bps B D Mouse tgaa B D Rat acat B D Turkey tgaa B D Chicken tgaa B D X. tropicalis agaa B D Pig ---- B D Manatee ==== B D Rabbit ---- B D Elephant ---- B D Guinea pig ==== B D Cow ---- B D Rhesus ---- B D Squirrel ---- B D Horse ==== B D Panda ==== B D Bushbaby ---- B D Dog ==== B D Gibbon ---- B D Orangutan ---- B D Gorilla ---- B D Chimp ---- B D Human ---- B D Naked mole-rat ---- B D Squirrel monkey ---- B D Marmoset ---- B D Sheep ---- B D Alpaca ---- D Little brown bat ==== B D Dolphin ---- B D Megabat ==== B D Shrew ---- B D Armadillo ==== B D Sloth ==== B D Hedgehog ==== B D Tarsier ---- B D Mouse lemur ---- B D Wallaby ==== B D Cat ==== B D Kangaroo rat ---- B D Rock hyrax ==== B D Opossum ==== B D Lizard ==== B D Tree shrew ---- B D Budgerigar ==== B D Tasmanian devil ==== B D Platypus ==== B D Zebrafish ==== B D Zebra finch ==== B D Baboon ---- B D Coelacanth ==== B D Painted turtle ==== Inserts between block 13 and 14 in window B D X. tropicalis 1783bp Alignment block 14 of 47 in window, 37092134 - 37092134, 1 bps B D Mouse a B D Rat a B D Turkey a B D Chicken a B D Pig - B D Manatee = B D Rabbit - B D Elephant - B D Guinea pig = B D Cow - B D Rhesus - B D Squirrel - B D Horse = B D Panda = B D Bushbaby - B D Dog = B D Gibbon - B D Orangutan - B D Gorilla - B D Chimp - B D Human - B D Naked mole-rat - B D Squirrel monkey - B D Marmoset - B D Sheep - B D Alpaca - D Little brown bat = B D Dolphin - B D Megabat = B D Shrew - B D Armadillo = B D Sloth = B D Hedgehog = B D Tarsier - B D Mouse lemur - B D Wallaby = B D Cat = B D Kangaroo rat - B D Rock hyrax = B D Opossum = B D Lizard = B D Tree shrew - B D Budgerigar = B D Tasmanian devil = B D Platypus = B D Zebrafish = B D Zebra finch = B D Baboon - B D X. tropicalis = B D Coelacanth = B D Painted turtle = Inserts between block 14 and 15 in window B D Turkey 389bp B D Chicken 397bp Alignment block 15 of 47 in window, 37092135 - 37092162, 28 bps B D Mouse gaaaaaaatcatatat---ta-----agc----------a-aaagaa B D Rat ---------catacat---ac-----agc----------a-aaa-aa B D Kangaroo rat ---------catatag---ta-----atg----------a-gaagaa B D Naked mole-rat ---------tatatgt---ta-----agc----------a-aaagaa B D Squirrel ---------tatgtat---ta-----agt----------a-aaagaa B D Rabbit ---------tatgtat---ta-----tgc----------a-aaagaa B D Human ---------catatat---ta-cttaagc----------a-aaagaa B D Chimp ---------cgtatat---ta-cttaagc----------a-aaagaa B D Gorilla ---------catatat---ta-cttaagc----------a-aaagaa B D Orangutan ---------catatat---ta-cttaagc----------a-aaagaa B D Gibbon ---------catatat---ta-cttaagc----------a-aaagaa B D Rhesus ---------catatat---ta-cttaagc----------a-aaagaa B D Baboon ---------catatat---ta-cttaagc----------a-aaagaa B D Marmoset ---------catatat---ta-cttaagc----------a-aaagaa B D Squirrel monkey ---------catatat---ta-cttcagc----------a-aaagaa B D Tarsier ---------catattt---ta-cttaagc----------a-aaataa B D Mouse lemur ---------catatat---ta-cttaagc----------agaaaaga B D Bushbaby ---------a--atat---ta-cttaagc----------a-aaagaa B D Tree shrew ---------catgtat---ta-ctttagt----------g-aaataa B D Pig ---agaaatcacatat---ta-cttaaga----------a------- B D Alpaca ---aaaaattacgtat---ta-cttaagc----------a-aaagaa B D Dolphin ---aaaaatcacata--------ttaagc----------a-aaacag B D Sheep ---aaatgtcacatat---ta-cttaagc----------a-aaagaa B D Cow ---aaatattacatat---ta-cttaagt----------g-aaagaa B D Dog -------------------tg-tttataagtgttgaatca-gtaaat B D Panda ---taaaagcaaaacaaaacc-tttaaaaatattaa---g-gaaaaa B D Horse -------------------ta-cttaagg----------a-aaagaa D Little brown bat -------------------ta-cttttgc----------a-aaagaa B D Megabat -------------------tg-cttaagt----------t-aaagaa B D Shrew --------------gaaatca-cattata----------a-gtagaa B D Elephant ----aaaatgatata--------ttaagc----------a-aaagag B D Manatee ----aaaatgatgta--------ttaagc----------a-aaagaa B D Armadillo ----aaaattatatat---ta-cttaaat----------a-taagaa B D Sloth ----aaaatcatattt---tg-tttaagc----------a-aaagaa B D Opossum ---agaagttatatgt---ta-----agg----------c-aagaaa B D Tasmanian devil ---aaaagttatttat---ta-----agc----------c-aagaaa B D Wallaby ---agaagttatatat---ta-----agc----------c-aagaaa B D Platypus tgaaaaaagtacatgt---ttccttaccc----------a-gaacta B D Guinea pig =============================================== B D Hedgehog =============================================== B D Cat =============================================== B D Rock hyrax =============================================== B D Lizard =============================================== B D Budgerigar =============================================== B D Zebrafish =============================================== B D Zebra finch =============================================== B D Chicken =============================================== B D X. tropicalis =============================================== B D Coelacanth =============================================== B D Painted turtle =============================================== B D Turkey =============================================== Inserts between block 15 and 16 in window B D Opossum 1bp B D Tasmanian devil 1bp B D Wallaby 1bp Alignment block 16 of 47 in window, 37092163 - 37092170, 8 bps B D Mouse -ggtattt---t B D Rat -ggcattt---t B D Kangaroo rat -agaatct---- B D Naked mole-rat -ggcattt---t B D Squirrel -gatgttt---t B D Rabbit -gactttt--gt B D Human -gacattt---t B D Chimp -gacattt---t B D Gorilla -gacattt---c B D Orangutan -gacattt---t B D Gibbon -gacattt---t B D Rhesus -gacattt---- B D Baboon -gacattt---- B D Marmoset -g-cattt---t B D Squirrel monkey -g-cattt---t B D Tarsier -gatgttg---t B D Mouse lemur -cactttt---a B D Bushbaby -tacattt---t B D Tree shrew -taaaatgaggc B D Pig -tacattt---t B D Alpaca -tatattt---t B D Dolphin -tacattt---t B D Cow -tgtattt---t B D Dog -tgtatac---c B D Panda -tgcattt---t B D Horse -tacattt---t D Little brown bat -tacattt---t B D Megabat -taca-tt---t B D Shrew -ggcattt---t B D Elephant -gacattt---t B D Manatee -gacattt---t B D Armadillo -gacagtt---t B D Sloth -gacaatt---t B D Opossum -ttgattt---- B D Tasmanian devil -ttgattt---- B D Wallaby -ttgattt---- B D Platypus cctgattt---- B D Guinea pig ============ B D Sheep NNNNNNNNNNNN B D Hedgehog ============ B D Cat ============ B D Rock hyrax ============ B D Lizard ============ B D Budgerigar ============ B D Zebrafish ============ B D Zebra finch ============ B D Chicken ============ B D X. tropicalis ============ B D Coelacanth ============ B D Painted turtle ============ B D Turkey ============ Inserts between block 16 and 17 in window B D Opossum 3285bp B D Tasmanian devil 50bp B D Wallaby 3397bp Alignment block 17 of 47 in window, 37092171 - 37092199, 29 bps B D Mouse ----attgaaa-tatta------------------------------a--------------a-atacaa B D Rat ----attgaaa-tcttg------------------------------a--------------a-atacaa B D Kangaroo rat ---------ga-taata------------------------------g--------------a-gtataa B D Naked mole-rat ----aatcaca-atttt------------------------------t--------------a-ttct-- B D Squirrel ----gattgca-atttc------------------------------t--------------a-a----- B D Rabbit ----attataa-tgttt------------------------------t--------------a------- B D Human ----attgcag-tttt-------------------------------t--------------a-ttctga B D Chimp ----attgcag-tttt-------------------------------t--------------a-ttctaa B D Gorilla ----attgcag-tttt-------------------------------t--------------a-ttctaa B D Orangutan ----attgcag-tttt-------------------------------t--------------a-ttctaa B D Gibbon ----atttcag-tttt-------------------------------t--------------a-ttctaa B D Rhesus ----attgcag-tttt-------------------------------t--------------a-ttctaa B D Baboon ----attgcag--ttt-------------------------------t--------------a-ttctaa B D Marmoset ----attgcag-tttt-------------------------------t--------------a-ttctga B D Squirrel monkey ----attgcaa-tttt-------------------------------t--------------a-ctctaa B D Tarsier ----gttgcaggttgt-------------------------------t--------------a-ttct-- B D Mouse lemur ----attgcat-ttttg------------------------------t--------------aatttttt B D Bushbaby ----attgcat-ttttg------------------------------t--------------a------- B D Tree shrew ----atttaaa-aaat-------------------------------t--------------a-ttctaa B D Pig ----aatacaa-tttt-------------------------------ttaaaaaact-----t-aat--- B D Alpaca ----aatatag-tttt-------------------------------t--aaaaactatttca-act--- B D Dolphin ----aatacga-tttt-------------------------------t--aaaaactatct-t-gtt--- B D Cow ----agtacaa-ttta-------------------------------t--aaaaactttta-a-cat--- B D Dog ------tgaaa-c----------------------------------t--agt---------a-tta--- B D Panda ----aatagaa-cttt-------------------------------t--aaa---------a-tta--- B D Horse ----aatagaa-tttt-------------------------------t----------------tta--- D Little brown bat ----aatacaa-gttt-------------------------------g--aaatgc------ataca--- B D Megabat ----aatacat-tttt-------------------------------t--tattct------a-aca--- B D Shrew ----aatatag-tttt-------------------------------t--------------a-tta--- B D Elephant ----ggttgca-ttttt------------------taaaacgtttttg--------------a-att--- B D Manatee ----gattgca-tttta------------------aaaaatttttcta--------------a-ctc--- B D Armadillo ----gattgca-ttttt------------------ccttaatagtctt--------------a-act--- B D Sloth ----g-------------------------------cttaattgtc-t--------------a-act--- B D Opossum ----aa---------------------------------------------------------------- B D Tasmanian devil ----aa---------------------------------------------------------------- B D Platypus actggtctcaa-atttggtgtatagaatgccagaccaaca------------------------------ B D Guinea pig ====================================================================== B D Sheep NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN B D Hedgehog ====================================================================== B D Wallaby ====================================================================== B D Cat ====================================================================== B D Rock hyrax ====================================================================== B D Lizard ====================================================================== B D Budgerigar ====================================================================== B D Zebrafish ====================================================================== B D Zebra finch ====================================================================== B D Chicken ====================================================================== B D X. tropicalis ====================================================================== B D Coelacanth ====================================================================== B D Painted turtle ====================================================================== B D Turkey ====================================================================== Mouse agctcaaca Rat -----aaca Kangaroo rat tgttttgca Naked mole-rat --------- Squirrel --------- Rabbit --------- Human ct------- Chimp ct------- Gorilla ct------- Orangutan ct------- Gibbon ct------- Rhesus ct------- Baboon ct------- Marmoset ca------- Squirrel monkey ct------- Tarsier --------- Mouse lemur at------- Bushbaby --------- Tree shrew tg------- Pig --------- Alpaca --------- Dolphin --------- Cow --------- Dog --------- Panda --------- Horse --------- Little brown bat --------- Megabat --------- Shrew --------- Elephant --------- Manatee --------- Armadillo --------- Sloth --------- Opossum --------- Tasmanian devil --------- Platypus --------- Guinea pig ========= Sheep NNNNNNNNN Hedgehog ========= Wallaby ========= Cat ========= Rock hyrax ========= Lizard ========= Budgerigar ========= Zebrafish ========= Zebra finch ========= Chicken ========= X. tropicalis ========= Coelacanth ========= Painted turtle ========= Turkey ========= Inserts between block 17 and 18 in window B D Kangaroo rat 2709bp Alignment block 18 of 47 in window, 37092200 - 37092205, 6 bps B D Mouse ttttta B D Rat attttg B D Naked mole-rat tttttg B D Squirrel cttttt B D Rabbit -ttttt B D Human cttttg B D Chimp cttttg B D Gorilla cttttg B D Orangutan cttttg B D Gibbon cttttg B D Rhesus cttttg B D Baboon cttttg B D Marmoset tttttg B D Squirrel monkey tttttg B D Tarsier tttttg B D Mouse lemur tttttg B D Tree shrew ctttaa B D Pig -ttttt B D Alpaca -ttttg B D Dolphin -ttttg B D Cow -ttttg B D Dog -ttaca B D Panda -ttcta B D Horse -ttcta D Little brown bat -tttct B D Megabat -ttttg B D Shrew -tcaag B D Elephant tttttg B D Manatee tttttg B D Armadillo gttttg B D Sloth ttttta B D Opossum -tattt B D Tasmanian devil -tatct B D Platypus ttttta B D Guinea pig ====== B D Bushbaby ------ B D Sheep NNNNNN B D Hedgehog ====== B D Wallaby ====== B D Cat ====== B D Kangaroo rat ====== B D Rock hyrax ====== B D Lizard ====== B D Budgerigar ====== B D Zebrafish ====== B D Zebra finch ====== B D Chicken ====== B D X. tropicalis ====== B D Coelacanth ====== B D Painted turtle ====== B D Turkey ====== Inserts between block 18 and 19 in window B D Dog 8bp B D Panda 10bp B D Horse 10bp D Little brown bat 589bp B D Megabat 29bp B D Shrew 9bp B D Opossum 3bp B D Tasmanian devil 1bp Alignment block 19 of 47 in window, 37092206 - 37092221, 16 bps B D Mouse ------catattacttattgaa-------- B D Rat ------tatattatttattgaa-------- B D Naked mole-rat ------gatactac----tgaa-------- B D Squirrel ------agtatgatttattgaa-------- B D Rabbit ------gacatcatttattggg-------- B D Human ------gatactatttattgaa-------- B D Chimp ------gataccatttattgaa-------- B D Gorilla ------gataccatttattgaa-------- B D Orangutan ------gataccatttattgaa-------- B D Gibbon ------gataccatttattgaa-------- B D Rhesus ------gataccatttattgaa-------- B D Baboon ------gataccatttattgaa-------- B D Marmoset ------gataccatctattgaa-------- B D Squirrel monkey ------gataccatctattgaa-------- B D Tarsier ------gataccatgtattgaa-------- B D Mouse lemur ------cataccatttgttgaa-------- B D Bushbaby ---------accatttgttgaa-------- B D Tree shrew ------aa-atcatgtaatgaa-------- B D Pig ------aatacaattttttgaa-------- B D Alpaca ------ggtatagtttttcgaa-------- B D Dolphin ------aatacaattttttgaa-------- B D Cow ------aatacagttttttgaa-------- B D Dog ------------actaactgga-------- B D Panda ------t-----gttttttgat-------- B D Horse ------gatacagttttttgaa-------- B D Shrew ------tatatttataattaaa-------- B D Elephant ------gctaccatttattgaa-------- B D Manatee ------gctaccatttattgca-------- B D Armadillo ------act---atttaatgaa-------- B D Sloth ------actctcatttattgaa-------- B D Opossum ------cttgttacatgtaaaa-------- B D Tasmanian devil ------tatgctatatatcaaa-------- B D Platypus aagatttagataattctgtaaattatgcaa B D Guinea pig ============================== B D Sheep NNNNNNNNNNNNNNNNNNNNNNNNNNNNNN D Little brown bat ============================== B D Megabat ============================== B D Hedgehog ============================== B D Wallaby ============================== B D Cat ============================== B D Kangaroo rat ============================== B D Rock hyrax ============================== B D Lizard ============================== B D Budgerigar ============================== B D Zebrafish ============================== B D Zebra finch ============================== B D Chicken ============================== B D X. tropicalis ============================== B D Coelacanth ============================== B D Painted turtle ============================== B D Turkey ============================== Inserts between block 19 and 20 in window B D Shrew 32066bp Alignment block 20 of 47 in window, 37092222 - 37092231, 10 bps B D Mouse ttttgaac-aa- B D Rat ttctcaac-aa- B D Naked mole-rat ttttaaac-aa- B D Squirrel ttctgaac-aa- B D Rabbit ccctgggc-aa- B D Human ctctgaac-aa- B D Chimp ctctgaac-aa- B D Gorilla ctctgaac-aa- B D Orangutan ctctgaac-aa- B D Gibbon ctcggaac-aa- B D Rhesus gtctgaac-aa- B D Baboon gtctgaac-aa- B D Marmoset ttgtgaac-aa- B D Squirrel monkey ttctgaac-aa- B D Tarsier ttctgaac-aa- B D Mouse lemur ttctggac-aa- B D Bushbaby ttctgaac-aa- B D Tree shrew ttctggac-ca- B D Pig ttctgagtaaa- B D Alpaca ttctgagt-aa- B D Dolphin ttgtgatt-aa- B D Cow ttctgaat-aa- B D Dog atttaaat-aa- B D Panda ttctgaac-aa- B D Horse ttctgaac-aa- B D Megabat -----aat-aa- B D Elephant ttttgtat-aa- B D Manatee ttctgtat-aa- B D Armadillo ctctgaat-ag- B D Sloth ttctgaat-ag- B D Opossum ------ac-aa- B D Tasmanian devil ---cttac-aa- B D Platypus -tgtgaat-gaa B D Guinea pig ============ B D Sheep NNNNNNNNNNNN D Little brown bat ============ B D Shrew ============ B D Hedgehog ============ B D Wallaby ============ B D Cat ============ B D Kangaroo rat ============ B D Rock hyrax ============ B D Lizard ============ B D Budgerigar ============ B D Zebrafish ============ B D Zebra finch ============ B D Chicken ============ B D X. tropicalis ============ B D Coelacanth ============ B D Painted turtle ============ B D Turkey ============ Inserts between block 20 and 21 in window B D Naked mole-rat 7bp B D Squirrel 7bp B D Rabbit 10bp B D Human 10bp B D Chimp 10bp B D Gorilla 10bp B D Orangutan 10bp B D Gibbon 10bp B D Rhesus 10bp B D Baboon 10bp B D Marmoset 3bp B D Squirrel monkey 3bp B D Tarsier 13bp B D Mouse lemur 6bp B D Bushbaby 13bp B D Tree shrew 13bp B D Pig 9bp B D Alpaca 3bp B D Dolphin 9bp B D Cow 9bp B D Dog 610bp B D Panda 9bp B D Horse 16bp B D Megabat 9bp B D Elephant 7bp B D Manatee 7bp B D Armadillo 8bp B D Sloth 10bp B D Opossum 3bp B D Tasmanian devil 3bp Alignment block 21 of 47 in window, 37092232 - 37092243, 12 bps B D Mouse tttttattgagt B D Rat tttttattgagt B D Naked mole-rat tcttaattgatt B D Squirrel tattaatcaagt B D Rabbit cattaattgaat B D Human cattagtcaagt B D Chimp cattagtcaagt B D Gorilla cattagtcaagt B D Orangutan cattagtcgaat B D Gibbon cattagtcgagt B D Rhesus cattagttgagt B D Baboon cattagtcgagt B D Marmoset cattagttgaat B D Squirrel monkey cattagttgaat B D Tarsier tattagttaag- B D Mouse lemur cattggttgagt B D Bushbaby cattagttgatt B D Tree shrew catta-ctaagt B D Pig ttatcattgagt B D Alpaca tagttattgagt B D Dolphin tagttatcaagt B D Cow tagttattgggt B D Panda ttatcattgagt B D Horse cactaattgagt B D Megabat --ttaattgggt B D Elephant cataaattgctt B D Manatee cataaattgcat B D Armadillo t----attgagt B D Sloth tattaattgagt B D Opossum aaaaagtttatt B D Tasmanian devil taaaaagttagt B D Platypus tgtttctcaagt B D Guinea pig ============ B D Dog ============ B D Sheep NNNNNNNNNNNN D Little brown bat ============ B D Shrew ============ B D Hedgehog ============ B D Wallaby ============ B D Cat ============ B D Kangaroo rat ============ B D Rock hyrax ============ B D Lizard ============ B D Budgerigar ============ B D Zebrafish ============ B D Zebra finch ============ B D Chicken ============ B D X. tropicalis ============ B D Coelacanth ============ B D Painted turtle ============ B D Turkey ============ Inserts between block 21 and 22 in window B D Platypus 797bp Alignment block 22 of 47 in window, 37092244 - 37092248, 5 bps B D Mouse --gtggc B D Rat --gtggc B D Naked mole-rat tggaagt B D Squirrel --gtgac B D Rabbit --gttac B D Human --gtgac B D Chimp --gtgac B D Gorilla --gtgac B D Orangutan --gtgac B D Gibbon --gtgac B D Rhesus --gtgac B D Baboon --gtgac B D Marmoset --gtaac B D Squirrel monkey --gtgac B D Tarsier --gtgac B D Mouse lemur --atgac B D Bushbaby --ataac B D Tree shrew --gtaa- B D Pig --atgac B D Alpaca --gtaac B D Dolphin --gtgac B D Cow --gtgac B D Panda --gcaat B D Horse --gcaat B D Megabat --atgac B D Elephant --gtgac B D Manatee --gtgac B D Armadillo --gtgac B D Sloth --gtgac B D Opossum --tt--- B D Tasmanian devil --gt--- B D Guinea pig ======= B D Dog ======= B D Sheep NNNNNNN D Little brown bat ======= B D Shrew ======= B D Hedgehog ======= B D Wallaby ======= B D Cat ======= B D Kangaroo rat ======= B D Rock hyrax ======= B D Lizard ======= B D Budgerigar ======= B D Platypus ======= B D Zebrafish ======= B D Zebra finch ======= B D Chicken ======= B D X. tropicalis ======= B D Coelacanth ======= B D Painted turtle ======= B D Turkey ======= Inserts between block 22 and 23 in window B D Cow 663bp Alignment block 23 of 47 in window, 37092249 - 37092250, 2 bps B D Mouse ca B D Rat ca B D Naked mole-rat ta B D Squirrel aa B D Rabbit tt B D Human ta B D Chimp ta B D Gorilla ta B D Orangutan ta B D Gibbon ta B D Rhesus ta B D Baboon ta B D Marmoset ta B D Squirrel monkey ta B D Tarsier tg B D Mouse lemur ta B D Bushbaby ta B D Tree shrew tg B D Pig ta B D Alpaca ca B D Dolphin ta B D Panda ga B D Horse tg B D Megabat ta B D Elephant ct B D Manatee ca B D Armadillo ta B D Sloth tt B D Opossum ca B D Tasmanian devil ct B D Guinea pig == B D Cow == B D Dog == B D Sheep NN D Little brown bat == B D Shrew == B D Hedgehog == B D Wallaby == B D Cat == B D Kangaroo rat == B D Rock hyrax == B D Lizard == B D Budgerigar == B D Platypus == B D Zebrafish == B D Zebra finch == B D Chicken == B D X. tropicalis == B D Coelacanth == B D Painted turtle == B D Turkey == Inserts between block 23 and 24 in window B D Naked mole-rat 1bp B D Squirrel 1bp B D Rabbit 1bp B D Human 1bp B D Chimp 1bp B D Gorilla 1bp B D Orangutan 1bp B D Gibbon 1bp B D Rhesus 1bp B D Baboon 1bp B D Marmoset 1bp B D Squirrel monkey 1bp B D Tarsier 1bp B D Mouse lemur 1bp B D Bushbaby 1bp B D Tree shrew 1bp B D Pig 1bp B D Alpaca 1bp B D Dolphin 1bp B D Panda 1bp B D Horse 1bp B D Megabat 1bp B D Elephant 1bp B D Manatee 1bp B D Armadillo 1bp B D Sloth 1bp Alignment block 24 of 47 in window, 37092251 - 37092304, 54 bps B D Mouse gttgctagcatcatattca--------------------------tt----------------------- B D Rat gttactgacatcatattca--------------------------tt----------------------- B D Naked mole-rat gttgcaggtatcatacaca--------------------------ct----------------------- B D Squirrel gttacaggcatcatactaaatca---------------------ttt----------------------- B D Rabbit gttgccagcat-gtactcatttaaaaaa------------t---ttt----------------------- B D Human gttacaggcattgtactaattttaaaaa------------t----tt----------------------- B D Chimp gttacaggcattgtactaattttaaaat------------t----tt----------------------- B D Gorilla gttacaggcattgtactaattttaaaaa------------t----tt----------------------- B D Orangutan gttgcaggcattgtactgatttaaaaaa------------t----tt----------------------- B D Gibbon gttgcaggcattgtactaattttaaaaa------------t----tt----------------------- B D Rhesus gttgcaggtgttgtactaattttaaaaa------------t----tt----------------------- B D Baboon gttgcaggtgttgtactaattttaaaaa------------t----tt----------------------- B D Marmoset gttgcaggcattgtactaattt------------------------------------------------ B D Squirrel monkey gttgcaggcattgtactaattt------------------------------------------------ B D Tarsier gttgcaggcattgtactaatttttaatt------------t----tt----------------------- B D Mouse lemur gttgcaggcatcttactaa--------------------------------------------------- B D Bushbaby gttgcaaatatcaaactagttt------------------------------------------------ B D Tree shrew tttgcaggcattgtactaaatgtacacg------------t----gtgtgtgtgtgtctctgtgtgtgtc B D Pig gttgcaggcattat----------aaac------------------------------------------ B D Alpaca gttgcaggcattgtactaaattaaaaac------------------------------------------ B D Dolphin gttgcaggcattgtactaattaaaaaac------------------t----------------------- B D Cow gttgcagacattatactaatttaaaaac------------------------------------------ B D Panda tttgtgggcattgtgctaatttaaaaaaacaagacaaaaca----tt----------------------- B D Horse gctgtaggaattgtactaatttaaaaaa------------------------------------------ B D Megabat gttgcaggtattgtactaattaaaaaaa------------------------------------------ B D Elephant gttacaggcattacactag---------------------ttattta----------------------- B D Manatee gttacaggcattatactagttttt----------------ttttttt----------------------- B D Armadillo atttcaggcattatacgaa---------------------ttattgt----------------------- B D Sloth cttgcaggcattatacaa---------------------------tt----------------------- B D Opossum ---------------------------------------------------------------------- B D Tasmanian devil ---------------------------------------------------------------------- B D Guinea pig ====================================================================== B D Dog ====================================================================== B D Sheep NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN D Little brown bat ====================================================================== B D Shrew ====================================================================== B D Hedgehog ====================================================================== B D Wallaby ====================================================================== B D Cat ====================================================================== B D Kangaroo rat ====================================================================== B D Rock hyrax ====================================================================== B D Lizard ====================================================================== B D Budgerigar ====================================================================== B D Platypus ====================================================================== B D Zebrafish ====================================================================== B D Zebra finch ====================================================================== B D Chicken ====================================================================== B D X. tropicalis ====================================================================== B D Coelacanth ====================================================================== B D Painted turtle ====================================================================== B D Turkey ====================================================================== Mouse ---------------------ataaattcctgt----------------gaggttagagc------agtt Rat ---------------------ataaattccttc----tggggtaaataagaggttagagc------agtt Naked mole-rat ---------------------ttctttttctga----tgagaaaac---aggcctggaga------agtt Squirrel ---------------------ttgttttcctgg----tgagaaaaca--gggcctggaga------agtt Rabbit ---------------------ttatttttctga----taagaaaac---taagctggcga------tatt Human ---tttaattttaaa------ttttttttctga----tgagaagac---agatgtggaga------agtt Chimp ---tttaattttaaa------ttttttttctga----tgagaagac---agacgtggaga------agtt Gorilla ---tttaatttaaaa------atttttttctga----tgagaagac---agacgtggaga------agtt Orangutan ---ttaaatttaaaa------ttttttttctga----tgagaagac---agacgtggaga------agtt Gibbon ---ttaaattttaaa------ttttttttctga----tgagaagac---agacgtggaga------agtt Rhesus ---taatattttaata-----ttttttttctga----tgagaagac---agacgtggaga------agtt Baboon ---taatattttaat------ttttttttctga----tgagaagac---agacgtggaga------agtt Marmoset ------------aaa------agttttttctgt----t---gagac---agacgtggaga------agtt Squirrel monkey ------------aaa------ttttttttctga----caagaagac---agacatggaga------agtt Tarsier ---------------------ttttttttctga----tgagaagac---aggcttgaaga------agtt Mouse lemur ---------------------tttaa-------------------------------------------- Bushbaby ---------------------ttttt-------------------------------------------- Tree shrew tgtctgtgtatgtat------ttgttcatttaa----tcagaagac---aggcccggagaaattatagtt Pig ----------------------tttttttctgt----taagatgac---aggcctgcaga------agtt Alpaca ---------------------tctttttcctga----tgaggagac---agacctggaga------aatg Dolphin ---------------------tttttttcctga----tgagaacac---aggcctggaga------agtt Cow ----------------------ttttttcctaa----taag---ac---aggcctagaga------ggtt Panda ---------------------ctttttttctga----tgagaaga----agacctggaga------agtt Horse ---------------------tttttttcctga----caaggaaac---aggcctgaaga------aggt Megabat ----------------------aatttttctga----tgagaaat------------------------t Elephant ---------------------ttttttttctga----tga---------------ggaga------aatt Manatee ---------------------ttttttttctgt----tgagaacat---at-cctggaga------aggt Armadillo ---------------------tattttttttaa----tgtgaaaac---ttgcttggaga------agtt Sloth ---------------------ttttttttctga----tatgaaaat---atgcttggaga------agtt Opossum ---ttgtcatgcaaagcacgcttccatat--------tggttattg---taaaaccaaac------tcat Tasmanian devil ---ttg----ggggggca---ttttatttctgaaatgtggctattc---tgtatctttaa------catt Guinea pig ====================================================================== Dog ====================================================================== Sheep NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN Little brown bat ====================================================================== Shrew ====================================================================== Hedgehog ====================================================================== Wallaby ====================================================================== Cat ====================================================================== Kangaroo rat ====================================================================== Rock hyrax ====================================================================== Lizard ====================================================================== Budgerigar ====================================================================== Platypus ====================================================================== Zebrafish ====================================================================== Zebra finch ====================================================================== Chicken ====================================================================== X. tropicalis ====================================================================== Coelacanth ====================================================================== Painted turtle ====================================================================== Turkey ====================================================================== Mouse ata-tta----- Rat atatttt----- Naked mole-rat aca-tgg----- Squirrel ata-tag----- Rabbit aca-tcg----- Human ata-tag----- Chimp ata-tag----- Gorilla ata-tag----- Orangutan ata-tag----- Gibbon ata-tag----- Rhesus ata-tag----- Baboon ata-tag----- Marmoset ata-tag----- Squirrel monkey ata-tgg----- Tarsier ata-tag----- Mouse lemur ------------ Bushbaby ------------ Tree shrew ata-aag----- Pig ata-taa----- Alpaca aca-tga----- Dolphin aga-taa----- Cow ata-taa----- Panda cta-taa----- Horse acg-taa----- Megabat aca-tag----- Elephant ata-taa----- Manatee ata-taa----- Armadillo atc-taa----- Sloth aac-caa----- Opossum aca-taa--cca Tasmanian devil aga-tgatgtta Guinea pig ============ Dog ============ Sheep NNNNNNNNNNNN Little brown bat ============ Shrew ============ Hedgehog ============ Wallaby ============ Cat ============ Kangaroo rat ============ Rock hyrax ============ Lizard ============ Budgerigar ============ Platypus ============ Zebrafish ============ Zebra finch ============ Chicken ============ X. tropicalis ============ Coelacanth ============ Painted turtle ============ Turkey ============ Inserts between block 24 and 25 in window B D Pig 19bp B D Alpaca 19bp B D Dolphin 19bp B D Cow 19bp B D Panda 6bp B D Horse 6bp B D Megabat 1bp B D Elephant 19bp B D Manatee 19bp B D Armadillo 19bp B D Sloth 19bp Alignment block 25 of 47 in window, 37092305 - 37092307, 3 bps B D Mouse a-------------------ag----- B D Rat a-------------------ag----- B D Naked mole-rat attactgatgttacatagtcag----- B D Squirrel cttattaaagttacatagtaag----- B D Rabbit cttactagagttctatagtgag----- B D Human cttactgaaattacatactaaa----- B D Chimp cttactgaaattacatactaaa----- B D Gorilla cttactgaaattacacactaaa----- B D Orangutan cttactgaaattacatactaaa----- B D Gibbon cttactgaaattacatactaaa----- B D Rhesus cttactgaaa-tacatactaaa----- B D Baboon cttactgaaa-tacatactaaa----- B D Marmoset cttactgaaa-ttcatactaaa----- B D Squirrel monkey cttactgaaa-ttcatgccaaa----- B D Tarsier ataactgaaactatgtagtaag----- B D Mouse lemur -------aaa----------------- B D Bushbaby -------aaa----------------- B D Tree shrew cttactaaagttatatagcaag----- B D Pig -------aag----------------- B D Alpaca -------gag----------------- B D Dolphin -------aaa----------------- B D Sheep -------aag----------------- B D Cow -------aag----------------- B D Panda -------gaa----------------- B D Horse -------gaa----------------- B D Megabat -------gag----------------- B D Elephant -------aaa----------------- B D Manatee -------aaa----------------- B D Armadillo -------gaa----------------- B D Sloth -------gaa----------------- B D Opossum --------------------aa----- B D Tasmanian devil --------------------aatgttg B D Guinea pig =========================== B D Dog =========================== D Little brown bat =========================== B D Shrew =========================== B D Hedgehog =========================== B D Wallaby =========================== B D Cat =========================== B D Kangaroo rat =========================== B D Rock hyrax =========================== B D Lizard =========================== B D Budgerigar =========================== B D Platypus =========================== B D Zebrafish =========================== B D Zebra finch =========================== B D Chicken =========================== B D X. tropicalis =========================== B D Coelacanth =========================== B D Painted turtle =========================== B D Turkey =========================== Inserts between block 25 and 26 in window B D Panda 15bp B D Horse 13bp Alignment block 26 of 47 in window, 37092308 - 37092340, 33 bps B D Mouse gggtaaagcc----------aacattcaaacccaaggaatctg B D Rat tgataaaacc----------agtgtacaaacccacggactttg B D Naked mole-rat tggtgaaacc----------agtgttcaaacccacagaatctg B D Squirrel tggtgaggcc----------agcat-cagacccaaggagcctg B D Rabbit gagtgaagct----------agcattcaaactccaggtatttg B D Human tggcagagtc----------acctttcaaacccaaggaatctg B D Chimp tggcagagtc----------acctttcaaacccaaggaatctg B D Gorilla tggcagagtc----------acctttcaaac----ggaatctg B D Orangutan tggcagagtc----------accattcaaacccaaggaatctg B D Gibbon tggcagagtc----------accattcaaacccaaggaatctg B D Rhesus tggcagagtc----------accattcaaacccaaggaatctg B D Baboon tggcagagtc----------accattcaaacccaaagaatctg B D Marmoset tggtagagtc----------atcattcaaacccaaggaatctg B D Squirrel monkey tggtagagtc----------accattcaaacccaaggaatctg B D Tarsier gaagggagcc----------accattcaaatccagggaatctg B D Mouse lemur ---------------------------aatcctaaggaatcta B D Bushbaby ---------------------------aagcctgagtaataca B D Tree shrew tgctagagcc----------agcattcaaacccaaggaacctg B D Pig tgatggagcc----------aacattgaacatcgg-------- B D Alpaca tggtagagcc----------agtgtgcaaaattgc-------- B D Dolphin tggtagagcc----------agcattcaaaatcag-------- B D Sheep tggtggaacc----------agcatttgaagtcag-------- B D Cow tggtggaacc----------agcatttgaagtcag-------- B D Dog gaatggagcc----------agcattcaaaatcag-------- B D Panda gaatggagcc----------agcattcaaaatcag-------- B D Horse tggtggagcc----------agtgttcaaaatcag-------- B D Megabat tgatggaacc----------agcattcaaattcag-------- B D Elephant gtatggagcc----------agcattcagacccaggtaatgtg B D Manatee gtgtggagcc----------agcattcagacccaggcagtatg B D Armadillo ttgtggagcc----------agctttcagacccaagcagtgtg B D Sloth ttgtggagcc----------accttttaaacccaggctgtctg B D Opossum -------accccaaaataagaccataaggacactg-------- B D Tasmanian devil --gtgttaccttacaac---accatacaaaagatg-------- B D Guinea pig =========================================== D Little brown bat =========================================== B D Shrew =========================================== B D Hedgehog =========================================== B D Wallaby =========================================== B D Cat =========================================== B D Kangaroo rat =========================================== B D Rock hyrax =========================================== B D Lizard =========================================== B D Budgerigar =========================================== B D Platypus =========================================== B D Zebrafish =========================================== B D Zebra finch =========================================== B D Chicken =========================================== B D X. tropicalis =========================================== B D Coelacanth =========================================== B D Painted turtle =========================================== B D Turkey =========================================== Inserts between block 26 and 27 in window B D Baboon 4343bp B D Opossum 3bp B D Tasmanian devil 3bp Alignment block 27 of 47 in window, 37092341 - 37092389, 49 bps B D Mouse t---------ctctggaccc--tgtgtttatt-aa---------------agcatcatcttgt------- B D Rat t---------ctctggaccc--tgtgtttgttaaa---------------aacattatcttgt------- B D Naked mole-rat g---------ctccagaacg--agtttttttc-ca---------------ggtgtcattttttgacc--- B D Squirrel g---------ctccagagtg--tgtgtttctc-ca---------------ggtatcattttgtgata--- B D Rabbit g---------ctgcagaatg--cgtgtttctt------------------------atttcatgacc--- B D Human g---------ctccataacg--tatgtttctc-ca---------------actgtaatttcat-atc--- B D Chimp g---------ctccataacc--tatgtttctc-ca---------------actgtaatttcat-acc--- B D Gorilla g---------ctccataacc--tatgtttctc-ca---------------actgtaatttcat-acc--- B D Orangutan g---------ctccataacc--tatgtttctc-ca---------------actgtaatttcat-acc--- B D Gibbon g---------ctccataacc--tacatttctc-ca---------------actgtaatttcat-acc--- B D Rhesus g---------caccataacc--tatgtttctc-ca---------------actgtaatttaat-acc--- B D Marmoset g---------ctccataacc--tatgtttttc-ca---------------actgtcatgtcgt-atc--- B D Squirrel monkey g---------ctccataacc--taagtttcac-ca---------------actgtcatgtcat-atc--- B D Tarsier g---------cttcataacc--tgtgtttatc-caggtttcattttggacactttagtatcat-ata--- B D Mouse lemur g---------ctccctaacc--t--gtttgtc-aa---------------agtgtcatttaatgacc--- B D Bushbaby g---------cttcataatc--t--gcttttc-ca---------------agtgttatttcatgacc--- B D Tree shrew g---------ctccagaact--tgttcttttc-ca---------------agtatcattcatt-act--- B D Pig t---------ctccagcacc--tttgtttctc-aa---------------a-----------tgatc--- B D Alpaca t---------ctccacagcc--tttatttctc-ta---------------g-----------ttatc--- B D Dolphin t---------ctccagatcc--tttgtttctc-ta---------------g-----------tgatc--- B D Sheep t---------ttccagaactgacttatttctc-ta---------------g-----------tgatc--- B D Cow t---------ttccagaact--tttatttctc-ta---------------g-----------tgatc--- B D Dog t---------ctccagaacc--tataattttc-tg---------------agtatcatttcatgattata B D Panda c---------ctccagaacc--tatatttttc-ta---------------agtatctttttgtgatttta B D Horse t---------ctcgagaaca--tatgtttctc-ca---------------agtgtcatttcatgacc--- B D Megabat t---------ttgtag-acc--tgagtttctc-ca---------------ggtattgtgtcctgacc--- B D Elephant g---------ctccagaccc--tgtgtttctt-ca---------------agtgccatttggtgaca--- B D Manatee g---------ctccagaacc--tgtgtttttg-ca---------------agtgtcatttggtgaca--- B D Armadillo g---------ctccagaa----tgtgtttctc-tg---------------ggtgttgtttgatgacc--- B D Sloth g---------ctccaggact--tgtgattctc-ca---------------gttgttgttaggtgacc--- B D Opossum taaaaggcaactccaccaat--tctttctctg-ga---------------a------------------- B D Tasmanian devil t---------cttcagagtt--gctgttataa-ga---------------a------------------- B D Guinea pig ====================================================================== D Little brown bat ====================================================================== B D Shrew ====================================================================== B D Hedgehog ====================================================================== B D Wallaby ====================================================================== B D Cat ====================================================================== B D Kangaroo rat ====================================================================== B D Rock hyrax ====================================================================== B D Lizard ====================================================================== B D Budgerigar ====================================================================== B D Platypus ====================================================================== B D Zebrafish ====================================================================== B D Zebra finch ====================================================================== B D Baboon ====================================================================== B D Chicken ====================================================================== B D X. tropicalis ====================================================================== B D Coelacanth ====================================================================== B D Painted turtle ====================================================================== B D Turkey ====================================================================== Mouse -------agtaatatcatag---------------- Rat -------atgagaatcatag---------------- Naked mole-rat agtaac-attagaattacat---------------- Squirrel agc----attacaatcatg----------------- Rabbit attagt-agtagaatcatat---------------- Human attagt-attagaatcatgt---------------- Chimp attagt-attagaatcatgt---------------- Gorilla attagt-attagaatcatgt---------------- Orangutan attagt-attaaaatcatgt---------------- Gibbon attagt-attagaatcatgt---------------- Rhesus tttagt-attagaatcatgt---------------- Marmoset attagt-attagaattatat---------------- Squirrel monkey attagt-attagaatcatat---------------- Tarsier attagc-attagaataatat---------------- Mouse lemur attagc-attagaataatat---------------- Bushbaby attagc-atc------atgt---------------- Tree shrew attagcaattggaatcatct---------------- Pig attagc-attagaattatat---------------- Alpaca attagc-attaaaattattc---------------- Dolphin attagc----------aaat---------------- Sheep attatc-attagaattatat---------------- Cow attatc-attagaattatgt---------------- Dog attagc-aaaagaatcctat---------------- Panda attaac-actggaatcacat---------------- Horse attagc-attggagtc-------------------- Megabat attagc-attagagtcatat---------------- Elephant gtttgc-attacaatcatat---------------- Manatee atttgc-attagaatcatat---------------- Armadillo gttaac-attagaatcttat---------------- Sloth attaat-attagagtcatat---------------- Opossum gtggat-ag---cattctccagcaaa---------- Tasmanian devil agtggt-aggtacataatgtaaaaaaattaaaatac Guinea pig ==================================== Little brown bat ==================================== Shrew ==================================== Hedgehog ==================================== Wallaby ==================================== Cat ==================================== Kangaroo rat ==================================== Rock hyrax ==================================== Lizard ==================================== Budgerigar ==================================== Platypus ==================================== Zebrafish ==================================== Zebra finch ==================================== Baboon ==================================== Chicken ==================================== X. tropicalis ==================================== Coelacanth ==================================== Painted turtle ==================================== Turkey ==================================== Inserts between block 27 and 28 in window B D Naked mole-rat 18bp B D Pig 4bp B D Alpaca 4bp B D Dolphin 4bp B D Sheep 4bp B D Cow 4bp B D Dog 4bp B D Panda 4bp B D Megabat 4bp B D Elephant 23bp B D Manatee 26bp B D Armadillo 21bp B D Sloth 22bp Alignment block 28 of 47 in window, 37092390 - 37092443, 54 bps B D Mouse aatttg------------t-tct--------------------------------ttaa---att--tga B D Rat aatttg------------t-tcta-------------------------------ctaa---att--tga B D Kangaroo rat aaattg------------t-tct--------------------------------cttacccaaa--tga B D Naked mole-rat aatttc------------t-tcta-------------------------------ctga---aac--tga B D Squirrel tgtttg------------t-tctaaatattcagttt---cac------c----tgttga---atc--tga B D Rabbit aattta------------t-tttaaaagttcagttt---ctt------t----tattga---atg--tga B D Human aaattt------------t-tttagaaattcaattt---ctt------c----tactga---atc--tga B D Chimp aaattt------------t-tttagaaattcaattt---ctt------c----tactga---atc--tga B D Gorilla aaattt------------t-tttagaaattcaattt---ctt------c----tactga---atc--tga B D Orangutan aaattt------------t-tttagaaattcagttt---ctt------c----tactga---atc--tga B D Gibbon aaattt------------t-tttagaaattcaattt---ctt------c----tactga---atc--tga B D Rhesus aaa-tt------------t-tttagaaattcaattt---ctt------c----tactga---atc--tga B D Marmoset aaattt------------t-tttagaaattcagttt---ctt------c----tgctga---gtc--tga B D Squirrel monkey aaactt------------t-tttagaaattcaattt---ctt------c----tgctga---atc--tga B D Tarsier gttttg------------t-ttaaaaaatttgatgt---ttc------c----tactga---atc--tga B D Mouse lemur aa--tt------------taaaaaaaaattcaattt---ctc------c----tgctga---atc--tga B D Bushbaby aa--tt------------t-tttcaaaattcagttt---atc------c----tgctga---atc--tga B D Tree shrew aactta------------c-ctgaaaaattccattt---ctt------c----tactga---ctc--tga B D Pig tatttg------------t-tttaaaaattcagttt---ttc------c----tactga---atc--tgt B D Alpaca tatataaaaatccagtgtt-tttaaaaattcagttt---ttc------c----tactga---atc--tga B D Dolphin tatttg------------t-tttaaaaattcagttt---ttc------c----tactga---atc--tga B D Sheep tatttg------------t-tttaaaatttt-ggtt---ttc------c----cactga---atc--tga B D Cow tatttg------------t-tttaaaaattt-gctt---ttc------c----cactga---atc--tga B D Dog tatttg------------t-tttaaaaattcatttt---ctc------t----tactga---atc--tga B D Panda tatttg------------t-tttaaaaattcatttt---ctc------t----tactga---atc--tga B D Megabat tacttg------------c-tttaaaaattcaaatt---ctc------c----tactga---atc--taa B D Elephant -------------------------------aatttaaattg------c----tactga---atc--tga B D Manatee -------------------------------aattt---ctc------c----tactga---atc--tga B D Armadillo -------------------------------aactt---ttc------ccctacattga---atc--gga B D Sloth -------------------------------agttt---ttc------c----tactga---atc--tga B D Opossum -------------------------------aatct---ttcaggattg----tcccag---atcattgc B D Tasmanian devil -------------------------------aattt---ttc-----tc----ttccaa---aac----- B D Guinea pig ====================================================================== B D Horse ---------------------------------------------------------------------- D Little brown bat ====================================================================== B D Shrew ====================================================================== B D Hedgehog ====================================================================== B D Wallaby ====================================================================== B D Cat ====================================================================== B D Rock hyrax ====================================================================== B D Lizard ====================================================================== B D Budgerigar ====================================================================== B D Platypus ====================================================================== B D Zebrafish ====================================================================== B D Zebra finch ====================================================================== B D Baboon ====================================================================== B D Chicken ====================================================================== B D X. tropicalis ====================================================================== B D Coelacanth ====================================================================== B D Painted turtle ====================================================================== B D Turkey ====================================================================== Mouse atttct--ggatctgggatgaggaatc---tg---ca----------ttttt Rat atttct--tgatctgagattaggaatc---tg---ta----------ttttt Kangaroo rat atttct--ggatgtagagctaaga--c---tg---cac---------ttttt Naked mole-rat atctctagggatttggacttgggaatc---tg---ca----------ttttt Squirrel atttct--ggatctcaggtttgagaac---tatgcca----------tctt- Rabbit atttct--gcatttgtgcttaggaatc---ta---tt----------ttt-- Human c--ttt--ggatctgggactcaggaat---ta---ta----------tttt- Chimp c--ttt--ggatctggggctcaggaat---ta---ta----------tttt- Gorilla c--ttt--ggatctggggctcaggaat---ta---ta----------tttt- Orangutan c--ttt--ggatctggggctcagaaat---ta---ta----------tttt- Gibbon c--ttt--ggatctggggctcaggaat---ta---ta----------tttt- Rhesus c--ttt--gaatatggggctcaggaat---ta---tat---------tttt- Marmoset c-tttt--ggatctggagctcaggaat---ta---cat---------tttt- Squirrel monkey c-tttt--ggatctgaagctcagaaat---ta---tat---------tttt- Tarsier attttt--ggatctggggttcaagaat---tg---tat---------tttt- Mouse lemur atttct--ggatctgggactcaggaatctgta---tt----------tttt- Bushbaby atttct--gtatctggggctcaggaatctcta---tt----------tttt- Tree shrew c-tttg--ggatctagggcttaggaaa-tctg---tac---------tatt- Pig atgtat--gaatttatggtttagaaat--ctg---tat---------tttt- Alpaca acgtct--tgatttagggtttaggaag--ctg---ta----------tttt- Dolphin atgtct--ggatttagggctccggaat--ctg---tat---------tttt- Sheep atatct--gaatttagggctcagaaat--ctg---tat---------tttt- Cow atatct--gaatttagggcttagaaat--ctg---tat---------tttt- Dog ttttct--ggatctaaggctaag----------------------------- Panda atttct--ggatctgagactgag-aat--ctg---tat---------tttt- Megabat atttat--gatttgaaggctcaggagt--ctg---tat---------tttt- Elephant atttct--ggatctgaggtttaggaat--ctg---cat---------tttt- Manatee atttct--agatctgagatttaggaat--at-----at---------tttt- Armadillo attttt--ggatatgggtctcaggaat--cta---tat---------tttt- Sloth atttct--ggatctgggtcttaggaat--ctg---tat---------tttt- Opossum attgct--gag----------aatagt--caa---caaaaacaactttctt- Tasmanian devil ---------------------aatagc--cag---tag---------tttt- Guinea pig ==================================================== Horse ---------------------------------------------------- Little brown bat ==================================================== Shrew ==================================================== Hedgehog ==================================================== Wallaby ==================================================== Cat ==================================================== Rock hyrax ==================================================== Lizard ==================================================== Budgerigar ==================================================== Platypus ==================================================== Zebrafish ==================================================== Zebra finch ==================================================== Baboon ==================================================== Chicken ==================================================== X. tropicalis ==================================================== Coelacanth ==================================================== Painted turtle ==================================================== Turkey ==================================================== Inserts between block 28 and 29 in window B D Squirrel 94bp Alignment block 29 of 47 in window, 37092444 - 37092447, 4 bps B D Mouse c--aca B D Rat c--aca B D Kangaroo rat t--aca B D Naked mole-rat t--acg B D Rabbit a--atg B D Human t--tta B D Chimp t--ata B D Gorilla t--ata B D Orangutan t--ata B D Gibbon t--ata B D Rhesus t--ata B D Marmoset t--ata B D Squirrel monkey t--ata B D Tarsier t--aca B D Mouse lemur t--ata B D Bushbaby ttaaca B D Tree shrew t--gta B D Pig --gata B D Alpaca --gaca B D Dolphin --gaca B D Sheep --gaca B D Cow --gaca B D Dog --gata B D Panda --gaca B D Megabat --caca B D Elephant --gaca B D Manatee --gacg B D Armadillo --ggca B D Sloth --caca B D Opossum --aaca B D Tasmanian devil --gaga B D Guinea pig ====== B D Squirrel ====== B D Horse ------ D Little brown bat ====== B D Shrew ====== B D Hedgehog ====== B D Wallaby ====== B D Cat ====== B D Rock hyrax ====== B D Lizard ====== B D Budgerigar ====== B D Platypus ====== B D Zebrafish ====== B D Zebra finch ====== B D Baboon ====== B D Chicken ====== B D X. tropicalis ====== B D Coelacanth ====== B D Painted turtle ====== B D Turkey ====== Alignment block 30 of 47 in window, 37092448 - 37092461, 14 bps B D Mouse atctat-ccaaaa-------ta-------------- B D Rat ttctat-ctcaaa-------ta-------------- B D Kangaroo rat catact-cccaaa-------ta-------------- B D Naked mole-rat tgtatt-ccccaa-------ga-------------- B D Rabbit tgctct-tccaag-------tg-------------- B D Human tgctct-tccaaa-------ta-------------- B D Chimp tgctct-tccaaa-------ta-------------- B D Gorilla tgctct-tccaaa-------ta-------------- B D Orangutan tgctct-tccaaa-------ta-------------- B D Gibbon tgctct-tccaaa-------ta-------------- B D Rhesus tactct-tccaaa-------ta-------------- B D Marmoset tactcc-ttcaaa-------ta-------------- B D Squirrel monkey tactcc-ttcaaa-------ta-------------- B D Tarsier tggtct-tccaaa-------ta-------------- B D Mouse lemur tgctct-ttcaaa-------ta-------------- B D Bushbaby tgcctt-ttcaaa-------ta-------------- B D Tree shrew cactcc-cccaga-------ta-------------- B D Pig actttt-cccaaa-------ta-------------- B D Alpaca ac-ttc-ctcaag-------ta-------------- B D Dolphin ac-ttt-cccaaa-------ta-------------- B D Sheep ac-tct-ccaaaa-------ta-------------- B D Cow ac-ttt-cccaaa-------ta-------------- B D Dog tgtgtt-ctcaaa-------ta-------------- B D Panda cgtgtt-ttcaag-------ta-------------- B D Horse -----t-cccagg-------ta-------------- B D Megabat agctct-tccaca-------ta-------------- B D Elephant tgctgt-ctgaga-------ta-------------- B D Manatee tgctgt-ctgaaa-------ta-------------- B D Armadillo tgctgt-cccaaa-------ta-------------- B D Sloth tacttt-cccaaatatttccta-------------- B D Tasmanian devil --ctatattcaag-------tgaaaattgtcctata B D Guinea pig ==================================== B D Squirrel ==================================== D Little brown bat ==================================== B D Shrew ==================================== B D Hedgehog ==================================== B D Wallaby ==================================== B D Cat ==================================== B D Rock hyrax ==================================== B D Opossum ==================================== B D Lizard ==================================== B D Budgerigar ==================================== B D Platypus ==================================== B D Zebrafish ==================================== B D Zebra finch ==================================== B D Baboon ==================================== B D Chicken ==================================== B D X. tropicalis ==================================== B D Coelacanth ==================================== B D Painted turtle ==================================== B D Turkey ==================================== Inserts between block 30 and 31 in window B D Rabbit 5bp B D Pig 4bp B D Alpaca 4bp B D Dolphin 4bp B D Sheep 4bp B D Cow 4bp B D Dog 4bp B D Panda 4bp B D Horse 4bp B D Megabat 2bp Alignment block 31 of 47 in window, 37092462 - 37092462, 1 bps B D Mouse t B D Rat t B D Kangaroo rat t B D Naked mole-rat c B D Rabbit t B D Human t B D Chimp t B D Gorilla t B D Orangutan t B D Gibbon t B D Rhesus t B D Marmoset t B D Squirrel monkey t B D Tarsier t B D Mouse lemur g B D Bushbaby c B D Tree shrew t B D Pig t B D Alpaca t B D Dolphin t B D Sheep t B D Cow t B D Cat t B D Dog t B D Panda t B D Horse t B D Megabat a B D Elephant t B D Manatee t B D Armadillo t B D Sloth t B D Tasmanian devil c B D Guinea pig = B D Squirrel = D Little brown bat = B D Shrew = B D Hedgehog = B D Wallaby = B D Rock hyrax = B D Opossum = B D Lizard = B D Budgerigar = B D Platypus = B D Zebrafish = B D Zebra finch = B D Baboon = B D Chicken = B D X. tropicalis = B D Coelacanth = B D Painted turtle = B D Turkey = Inserts between block 31 and 32 in window B D Human 4bp B D Chimp 4bp B D Gorilla 4bp B D Orangutan 4bp B D Gibbon 4bp B D Rhesus 3707bp B D Marmoset 4bp B D Squirrel monkey 4bp B D Tarsier 4bp B D Mouse lemur 4bp B D Bushbaby 4bp B D Elephant 4bp B D Manatee 4bp B D Armadillo 4bp B D Sloth 4bp Alignment block 32 of 47 in window, 37092463 - 37092489, 27 bps B D Mouse --tatgaacacataaatcta---aaatc-------------tatt------ B D Rat --tatga--atgtaagtcta---agaac----------------------- B D Kangaroo rat --tatgtatacttcaatgta---agaac-------------tgtt------ B D Naked mole-rat --tactt--aatgtaatgta---agaactacttaaagtaagtatt------ B D Rabbit --tatgtttactt-agtgta---agaac-------------tatt------ B D Human --tatgtacccttacgtgta---agaac-------------tatg------ B D Chimp --tatgtacccttacgtgta---agaac-------------tatg------ B D Gorilla --tatgtacccttacatgta---agaac-------------tgtg------ B D Orangutan --tatgtacccttacgtgta---agaac-------------tatg------ B D Gibbon --tatgttcccttatgtgta---agaac-------------tatg------ B D Marmoset --tatgtgcccttacatgta---agaac-------------tatg------ B D Squirrel monkey --tatgtacccttacgtgtt---agaac-------------tatg------ B D Tarsier --tacatatactta-gtttg---agaac-------------catg------ B D Mouse lemur --tttatatactgaagtgtg---agaac-------------tatg------ B D Bushbaby --tatatgcacttaagtgtg---agaac-------------tttt------ B D Tree shrew --taagtacacttaagt---------------------------------- B D Pig --tatgtgcacttgagtatg---agaac-------------tgtt------ B D Alpaca --tatgcacacctaagtttg---agaag-------------tact------ B D Dolphin --tatgtacacttgagtgtg---agaac-------------tatt------ B D Sheep --tatgtacacttgagtgtg---agaac-------------tatt------ B D Cow --tatgtacacttgagtgtg---agaac-------------tatt------ B D Cat --tacttacacttaaatgtg---agaac-------------taac------ B D Dog --cacatatacttacatgtg---agaac-------------taat------ B D Panda --tacatatacttaaaagtg---aaaac-------------taat------ B D Horse --tatgaacacttaagtgtg---agaac-------------tact------ B D Megabat --cacatgtagttaagtgtg---agaac-------------tatc------ B D Elephant --tatgtatatgtaagtgta---agaac-------------tatt------ B D Manatee --gatgtatatctcagtgta---aggac-------------tgtt------ B D Armadillo --catgtgcaatgatgtgtg---agaac-------------cact------ B D Sloth --tatgtacactgaagtgtg---agaac-------------catt------ B D Tasmanian devil catgcatatattgagttttagatagagc-------------tttatttgtt B D Guinea pig =================================================== B D Rhesus =================================================== B D Squirrel =================================================== D Little brown bat =================================================== B D Shrew =================================================== B D Hedgehog =================================================== B D Wallaby =================================================== B D Rock hyrax =================================================== B D Opossum =================================================== B D Lizard =================================================== B D Budgerigar =================================================== B D Platypus =================================================== B D Zebrafish =================================================== B D Zebra finch =================================================== B D Baboon =================================================== B D Chicken =================================================== B D X. tropicalis =================================================== B D Coelacanth =================================================== B D Painted turtle =================================================== B D Turkey =================================================== Inserts between block 32 and 33 in window B D Bushbaby 392bp Alignment block 33 of 47 in window, 37092490 - 37092505, 16 bps B D Mouse ---gtaacatgttatgctg B D Kangaroo rat ---gt-------------- B D Naked mole-rat ---atattatgttatacta B D Rabbit ---atttcatgttatgttg B D Human ---gtactgtgttatactg B D Chimp ---gtactgtgttatactg B D Gorilla ---gtactgtgttatactg B D Orangutan ---gtactgtgttatactg B D Gibbon ---gtactgtgttatactg B D Marmoset ---gtactatgttatactg B D Squirrel monkey ---gtactatgttatactg B D Tarsier ---gatccacattatactg B D Mouse lemur ---gtaccatggta----- B D Pig ---gtactatgttatacta B D Alpaca ---gtactgtgttattctg B D Dolphin ---gtactatgttatactg B D Sheep ---gtacaatcctatactg B D Cow ---gtacagtcctatactg B D Cat ---gtactatgttatacta B D Dog ---gtactatgttatactg B D Panda ---gtactaggttgtattg B D Horse ---gtactatgttacagtg B D Megabat ---gta--------tactg B D Elephant ---gcattctgcaataatg B D Manatee ---gcattctgctatcctg B D Armadillo ---aca--ccattatattg B D Sloth ---gca--ccattatactg B D Tasmanian devil gttaaatgatgctatg--- B D Guinea pig =================== B D Rhesus =================== B D Squirrel =================== B D Bushbaby =================== B D Rat ------------------- D Little brown bat =================== B D Shrew =================== B D Hedgehog =================== B D Wallaby =================== B D Rock hyrax =================== B D Opossum =================== B D Lizard =================== B D Tree shrew ------------------- B D Budgerigar =================== B D Platypus =================== B D Zebrafish =================== B D Zebra finch =================== B D Baboon =================== B D Chicken =================== B D X. tropicalis =================== B D Coelacanth =================== B D Painted turtle =================== B D Turkey =================== Inserts between block 33 and 34 in window B D Tarsier 2375bp Alignment block 34 of 47 in window, 37092506 - 37092523, 18 bps B D Mouse ctttctatta-tgata-----gcc-- B D Rat --atctataa-tgata-----gcc-- B D Kangaroo rat --gcctctta-aaataggcatgcc-- B D Naked mole-rat ccttcttatg-taata-----aac-- B D Rabbit ctttct------aata-----atc-- B D Human -----tctta-taata-----acc-- B D Chimp --tcttctta-taata-----acc-- B D Gorilla --tcttctta-taata-----acc-- B D Orangutan --tcttctta-taata-----acc-- B D Gibbon --tcttctta-taata-----acc-- B D Marmoset --tcttctta-taaaa-----acc-- B D Squirrel monkey --tcttctta-taaaa-----acc-- B D Mouse lemur -----taata-caata-----ata-- B D Pig --ccttcttattaaaa-----acc-- B D Alpaca -----cctta-taaaa-----gtc-- B D Dolphin --ctttctta-taaaa-----acc-- B D Sheep --atttctta-gaaaa-----acc-- B D Cow --atttcttg-gaaaa-----acc-- B D Cat --ccttcttg-taata-----acc-- B D Dog --ccacctta-aaata-----acc-- B D Panda --ccttctta-taata-----acc-- B D Horse --ccttctta-tagta-----acc-- B D Megabat --ccttctta-gaagg-----acc-- B D Elephant --ccttttca-tttaa-----ttc-- B D Manatee --ccttttca-tttaa-----ttc-- B D Armadillo --ccttctca-tttaa-----ttc-- B D Sloth --ccttctca-tttag-----ttc-- B D Tasmanian devil ---tactctg-gaaaa-----ataaa B D Guinea pig ========================== B D Rhesus ========================== B D Squirrel ========================== B D Bushbaby ========================== D Little brown bat ========================== B D Shrew ========================== B D Hedgehog ========================== B D Tarsier ========================== B D Wallaby ========================== B D Rock hyrax ========================== B D Opossum ========================== B D Lizard ========================== B D Tree shrew -------------------------- B D Budgerigar ========================== B D Platypus ========================== B D Zebrafish ========================== B D Zebra finch ========================== B D Baboon ========================== B D Chicken ========================== B D X. tropicalis ========================== B D Coelacanth ========================== B D Painted turtle ========================== B D Turkey ========================== Inserts between block 34 and 35 in window B D Elephant 11bp B D Manatee 11bp B D Armadillo 11bp B D Sloth 3651bp Alignment block 35 of 47 in window, 37092524 - 37092540, 17 bps B D Mouse atgga----------ag-------------------------ttgcatgt--------aa- B D Rat atata----------ag-------------------------ttgcatgt--------ga- B D Kangaroo rat attta----------ag-----tggt----cttattcttcttttgcatataaagaaacaa- B D Naked mole-rat ctgta----------ca---atgggt----ggtttttttcttttacaggtaaact---ga- B D Rabbit ctata----------gattgaataat----gctggtgatcttttacaaataaagaag-ca- B D Human ctgta----------ggttgagagat----tttatttatttatttttta---------ca- B D Chimp ctgta----------ggttgagtgat----tttatttatttttttttta---------ca- B D Gorilla ctgta----------ggttgagtgat----tttatttatttatttttta---------ca- B D Orangutan ctgta----------ggttgagtggt----tttatttatttatttttta---------ca- B D Gibbon ctgta----------ggttgagtgattttatttatttatttatttttta---------ca- B D Marmoset ct-ta----------tgttggatgat----ttga------tttttttaa---------ca- B D Squirrel monkey ct-ta----------ggttggatgat----ttgatt--tttttttttaa---------ca- B D Mouse lemur ctgta----------ggttgggtggt----ggtattctttttttttttt---------tt- B D Pig ctgta----------ggttaggtgat----actgttgtgtttttataga---------aa- B D Alpaca ctgta----------ggttaggtggt----attgttc---ttttacaga---------ta- B D Dolphin ttgtg----------ggttaggtgat----attgttt--tttttacagg---------ta- B D Sheep ctgtt-attcttgtttgtttgtttgt----ttgtttc--tttttacaga---------ta- B D Cow ctgttaattgttggtttttggttttt---ggtttttc--tttttacaga---------ta- B D Cat ctata----------gattaggttgt----attgttgctcttttacagg---------ta- B D Dog ctgta----------gattacatggt----gctgttgctctttgagaga---------ta- B D Panda ctgta----------ggttggatggt----aatgttgctctttttcaga---------aa- B D Horse ctgta----------ggttaggtggt----attgttctttacagataaa---------ga- B D Megabat ctgta----------cgttaagtggc----atta-tgttcttttatagc---------ta- B D Elephant ctgtg----------ggttag-tggt----attg------ttcttttta---------ca- B D Manatee ctgtg----------agttag-tggt----attgttc---ttcttttta---------ca- B D Armadillo ctgtg----------ggttagttggt----attg------ttc-tttga---------ca- B D Tasmanian devil ---------------------atggc--------------ttttgcatg---------taa B D Guinea pig ============================================================= B D Rhesus ============================================================= B D Squirrel ============================================================= B D Bushbaby ============================================================= D Little brown bat ============================================================= B D Shrew ============================================================= B D Sloth ============================================================= B D Hedgehog ============================================================= B D Tarsier ============================================================= B D Wallaby ============================================================= B D Rock hyrax ============================================================= B D Opossum ============================================================= B D Lizard ============================================================= B D Tree shrew ------------------------------------------------------------- B D Budgerigar ============================================================= B D Platypus ============================================================= B D Zebrafish ============================================================= B D Zebra finch ============================================================= B D Baboon ============================================================= B D Chicken ============================================================= B D X. tropicalis ============================================================= B D Coelacanth ============================================================= B D Painted turtle ============================================================= B D Turkey ============================================================= Inserts between block 35 and 36 in window B D Tasmanian devil 3137bp Alignment block 36 of 47 in window, 37092541 - 37092560, 20 bps B D Mouse tt-------------------------ttctag-----------tatttttct---agt B D Rat tt-------------------------ttccag-----------tatttttct---aag B D Kangaroo rat gg-------------------------ctcaagtt-aggtcacatattttccctagggg B D Naked mole-rat gg-------------------------ctcaaagt-agattagatatattgccta-agg B D Rabbit ga-------------------------gtcaaact-agcttaaatattttgcctt-agt B D Human gt-------------------------ttctga-----------gac------------ B D Chimp gt-------------------------ttctga-----------gac------------ B D Gorilla gt-------------------------ttctga-----------gac------------ B D Orangutan gt-------------------------ttctga-----------gac------------ B D Gibbon gt-------------------------ttctga-----------gac------------ B D Marmoset gt-------------------------ttctga-----------gac------------ B D Squirrel monkey gt-------------------------ttctga-----------aat------------ B D Mouse lemur tt-------------------------ttct---------------t------------ B D Pig aa-------------gaaattgaga--ttcaagct-aggttaaatgtct----taaag- B D Alpaca aa-------------taaaccgaga--ttcaagca-aggctaaatatcttgcctaaca- B D Dolphin aa-------------gaaactgaga--ttcaagct-agtttaaatatcttgcataaag- B D Sheep aa-------------gagactgaga--ttcaagct-aggttaaatatctttcttaaag- B D Cow aa-------------gagactgaga--ttcaagct-aggttaaatatctttcttaaaa- B D Cat aa-----------------ctg------tcaag-t-aggttaaataccttgtttaaag- B D Dog aa-----------------ctgc----ttcaagct-aggtttattatttttcttaatg- B D Panda aa-----------------gtga----ttcaagct-aggtttaatatcttgcttaaag- B D Horse aa-----------------ctgagt--ttcacactgaggttaaatatcttgcttaaag- B D Megabat aaaaataaataaataaaacctgaga--ttcaagct-aggttaaatatcttgcttaaag- B D Elephant ca-----------------taaacagatttaggcc-aacttaaatatcttgtctaagg- B D Manatee gg-----------------taaacatattcaggct-agcttaaatatcttgcctgagg- B D Armadillo ga-----------------taaaga----------------aaatg--------agat- B D Guinea pig =========================================================== B D Rhesus =========================================================== B D Squirrel =========================================================== B D Bushbaby =========================================================== D Little brown bat =========================================================== B D Shrew =========================================================== B D Sloth =========================================================== B D Hedgehog =========================================================== B D Tarsier =========================================================== B D Wallaby =========================================================== B D Rock hyrax =========================================================== B D Opossum =========================================================== B D Lizard =========================================================== B D Tree shrew ----------------------------------------------------------- B D Budgerigar =========================================================== B D Tasmanian devil =========================================================== B D Platypus =========================================================== B D Zebrafish =========================================================== B D Zebra finch =========================================================== B D Baboon =========================================================== B D Chicken =========================================================== B D X. tropicalis =========================================================== B D Coelacanth =========================================================== B D Painted turtle =========================================================== B D Turkey =========================================================== Inserts between block 36 and 37 in window B D Human 29bp B D Chimp 29bp B D Gorilla 29bp B D Orangutan 29bp B D Gibbon 29bp B D Marmoset 29bp B D Squirrel monkey 29bp B D Mouse lemur 52bp Alignment block 37 of 47 in window, 37092561 - 37092684, 124 bps B D Mouse tcatccctat--agtaaggattccaaactggaat--tcttatctatacgttttatttctaaagg---cat B D Rat tcatccctat--agtaagacttacaaactgaaat--tctaatttagatgttttatttccaaaggaattat B D Kangaroo rat tcacctaagt--agtaacaggcacaggctaggat--tttgatctgaa-----tatttccaaagtccttgc B D Naked mole-rat tcactcaaat--agtaaaggacata-gctatgat--tctgatctggacattttgtatccaaagaccttgt B D Squirrel tcacccaagt--agtaaggtaggca-gctgggat--ttcaatctggacattttatttccaaagaccttgt B D Rabbit ccatttaagt--agtaaatgacaca-gctg-aat--tctggtctggacat--tatttccaaagctcttgt B D Human ttacccaagt--agttaatgacaca-gcttgggt--tctaacccagacattttattttcaaagcccttgt B D Chimp ttacccaagt--agttaatgacaca-gcttgggt--tctaacccagacattttattttcaaagcccttgt B D Gorilla ttacccaagt--agttaatgacaca-gcttgggt--tctaacccagacattttgttttcaaagcccttgt B D Orangutan ttacccaagt--agttaatgacaca-gcttggat--tctaacccagacattttattttcaaagcccttgt B D Gibbon ttacccaagt--agttaatgataca-gcttggat--tctaacccagacattttattttcaaagcccttgt B D Marmoset ttacccaagt--agttaatgacaca-gctgagat--tctgatacagacattttattttcaaagcccttgt B D Squirrel monkey ttacccaagt--aattaatgacaca-gctgagat--tctgacacagacattttattttcaaagcccttgt B D Mouse lemur ttacccaaat--agttagtgacaca-actgggat--tctgatccaggcattttatttgcagagtcc---t B D Tree shrew atacccaagc--agtaaatgacaga-gctgggat--tctgatccagatacattatttctaaagtccttgt B D Pig ttacccaact--attaagtgacaca-gctaggat--tctaatctgggcattttatttccaaaccctttgt B D Alpaca tcactcagtttatttaagtgacaca-gctagaat--tctgatctggacattttatttccaaagactttgt B D Dolphin tcacccaact--attaagtgacaca-agtaggat--tctgatctgggcattttatttccaaagcctttgt B D Sheep tcacccaact--attaagttaaaca-gctaggat--tctgatctgagtatttta-ttccaaagtctttgt B D Cow tcacccaact--attaagttaaaca-gctaggat--tctgatctgggtattttatttctaaagcctttgt B D Cat tcatccaaat--agtaagtgacaca-gctgggat--tctgatctggacattgtatttccaaagcccttgt B D Dog tcacacaaat------aataacaca-gctgggat--tcttatctggata--ttatttccaaagcccttgt B D Panda tcacccaaat--agtaagtaacaca-gctggagt--tcttatctagacattttattttcaaagcccttat B D Horse tcaccaaagt--agtaagtgacaca-attaggat--tctcttctggacatttcatttccaaagcccttgg B D Megabat tcaact-agt--agtaagggacaca-gctgggat--ttcgatgcagacattttatttccaaagcctttgt B D Elephant tcacccaagt------agtgacaca-actgggat--tctgatccagacattgcatttccagagttctggt B D Manatee tcacgcgagt--agtaagtgacaca-actgggat--tccagtccagtcattacatttccaaagttctggt B D Armadillo tcaatctagc---ttaagtatcttg-cctaaggtcatctcatccagttgttttattcctaaagccct-tt B D Guinea pig ====================================================================== B D Rhesus ====================================================================== B D Bushbaby ====================================================================== D Little brown bat ====================================================================== B D Shrew ====================================================================== B D Sloth ====================================================================== B D Hedgehog ====================================================================== B D Tarsier ====================================================================== B D Wallaby ====================================================================== B D Rock hyrax ====================================================================== B D Opossum ====================================================================== B D Lizard ====================================================================== B D Budgerigar ====================================================================== B D Tasmanian devil ====================================================================== B D Platypus ====================================================================== B D Zebrafish ====================================================================== B D Zebra finch ====================================================================== B D Baboon ====================================================================== B D Chicken ====================================================================== B D X. tropicalis ====================================================================== B D Coelacanth ====================================================================== B D Painted turtle ====================================================================== B D Turkey ====================================================================== Mouse tttttaaaataa-attctataccttttagat-a-tttttgataatattttttgtaatattcctg Rat ttttaaacataatattctatacgttttaaat-a-tttc--------------------tttgta Kangaroo rat tcataaccatattgctctatgccttctagac-a-tttc-----------tagataatttccctg Naked mole-rat tcct-aacacaatgctctattccttctagac-a-tttt-------------tctaataactcta Squirrel tcttaatcatagtgctctatgc--------t-g-tttt-------------tgtaatattcctg Rabbit tcataatc--aatgctccatgctttctagac-a-tttc-----------tttgtaatatccttg Human tcttaactatgatgttgtgtgccttctagac-a-tttc-----------ttcgtaatgtctctg Chimp tcttaactatgatgttctgtgccttctagac-a-tttc-----------ttcgtaatgtctctg Gorilla tcttaactatgatgttctgtgccttctagac-a-tttc-----------ttcgtaatgtctctg Orangutan tcttaactatgatgctctgtgccttctagac-a-tttc-----------ttcataatgtctctg Gibbon tcttaactatgatgctctgtgccttctagac-a-tttc-----------ttcataatgtctctg Marmoset tcttaaccaggatgttctgtgccttctagac-a-tttc-----------tttataatatcccta Squirrel monkey tcttaaccaggatgttctgtgccttctagac-a-tttc-----------tttataatatccctg Mouse lemur tcttaaccatgatgttctatgacttctagac-a-tttc-----------tttgtaatatccctg Tree shrew tccaaaacataatattctgtgtgctttagat-a-gttt-----------ttcttattaaccctg Pig tcttgtccacagtatgttgtgccttttagac-cttttt-----------tttgtaatatatctg Alpaca tcttatccataatacattataccttttagac-a-tttc-----------tttttaatatccctg Dolphin tcttagccataatacattatgccttttagac-a-tttc-----------tttgtaatatccctg Sheep tcttctccataatacgttatgcctcttacat-a-tacc-----------cttgtaatatcccta Cow tcttctccataatacattatgccttttacat-a-tacc-----------tttgtaatatcccta Cat ctttagaca-------ctatgcc-tttagac-a-tttc-----------tttgtaacatccctg Dog caataaccataatatgttatgccttttagac-a-tttc-----------tttgtaatattcctg Panda cagtaaccataatatgctgtgccttttagac-a-tttc-----------tttatagtatccctg Horse tcttaaccataatacactatgccttttacac-a-tttc-----------tttgtaatatccctg Megabat ccttaaccatgat-cactatgccttttagacaa-gttc-----------tttgtgatattcttg Elephant tcttaactgtggtgctccatgccttcaaaac-g--ttc-----------tttgtaatatcccca Manatee tcttaaccatgatgttctatgccttctaaac-g-tttc-----------tttgtaatatctcca Armadillo tcttagtcataatgctttataccttctaggc-a-tttc-----------tttgtcatatcccta Guinea pig ================================================================ Rhesus ================================================================ Bushbaby ================================================================ Little brown bat ================================================================ Shrew ================================================================ Sloth ================================================================ Hedgehog ================================================================ Tarsier ================================================================ Wallaby ================================================================ Rock hyrax ================================================================ Opossum ================================================================ Lizard ================================================================ Budgerigar ================================================================ Tasmanian devil ================================================================ Platypus ================================================================ Zebrafish ================================================================ Zebra finch ================================================================ Baboon ================================================================ Chicken ================================================================ X. tropicalis ================================================================ Coelacanth ================================================================ Painted turtle ================================================================ Turkey ================================================================ Inserts between block 37 and 38 in window B D Rabbit 5854bp Alignment block 38 of 47 in window, 37092685 - 37092704, 20 bps B D Mouse caattta-ctattgaataaaa B D Rat ctattta-ttattgaataaaa B D Kangaroo rat tcagttc-ttatc-aataaaa B D Naked mole-rat tgactaa-ttatcaaataaaa B D Squirrel cccctgg-tgattgggtaaaa B D Human ccattga-ttattaagtaaaa B D Chimp ccattga-ttattaagtaaaa B D Gorilla ccattga-ttattaagtaaaa B D Orangutan ccattga-ttattaagtaaaa B D Gibbon ccattga-ttattaagtaaaa B D Marmoset ccattgatttattgagtaaga B D Squirrel monkey ctgttgatttattgagtaaaa B D Mouse lemur tcattga-ttattaagtaaaa B D Tree shrew ccattaa-ctatcaagtaaaa B D Pig gcactga-ttatcaagtaaaa B D Alpaca acactga-ttatcaggtgaaa B D Dolphin tcattga-ttatcaagtaaaa B D Sheep acattga-ttatcaagtaaaa B D Cow acattga-ttatcaagtaaaa B D Cat ccactga-ttgtcaagcaaag B D Dog ccattga-ttagcaagtaaaa B D Panda ccattga-ttatcaagtaaaa B D Horse ctattga-ttatcaggtaaaa B D Megabat ccactga-ttatcaggtaaaa B D Elephant ccattgc-ttattgagtagta B D Manatee ccattgc-ttattgagtagaa B D Armadillo ccattgt-ttattgagtcgta B D Rabbit ===================== B D Guinea pig ===================== B D Rhesus ===================== B D Bushbaby ===================== D Little brown bat ===================== B D Shrew ===================== B D Sloth ===================== B D Hedgehog ===================== B D Tarsier ===================== B D Wallaby ===================== B D Rock hyrax ===================== B D Opossum ===================== B D Lizard ===================== B D Budgerigar ===================== B D Tasmanian devil ===================== B D Platypus ===================== B D Zebrafish ===================== B D Zebra finch ===================== B D Baboon ===================== B D Chicken ===================== B D X. tropicalis ===================== B D Coelacanth ===================== B D Painted turtle ===================== B D Turkey ===================== Inserts between block 38 and 39 in window B D Panda 3380bp Alignment block 39 of 47 in window, 37092705 - 37092707, 3 bps B D Mouse ata B D Rat ata B D Kangaroo rat cta B D Naked mole-rat act B D Squirrel ctg B D Human gta B D Chimp gta B D Gorilla gta B D Orangutan gta B D Gibbon gta B D Marmoset gtg B D Squirrel monkey gtg B D Mouse lemur cta B D Tree shrew ata B D Pig cta B D Alpaca cta B D Dolphin cta B D Sheep cta B D Cow cta B D Cat cta B D Dog cta B D Horse ctg B D Megabat ctt B D Elephant ctg B D Manatee cta B D Armadillo tta B D Rabbit === B D Guinea pig === B D Rhesus === B D Panda === B D Bushbaby === D Little brown bat === B D Shrew === B D Sloth === B D Hedgehog === B D Tarsier === B D Wallaby === B D Rock hyrax === B D Opossum === B D Lizard === B D Budgerigar === B D Tasmanian devil === B D Platypus === B D Zebrafish === B D Zebra finch === B D Baboon === B D Chicken === B D X. tropicalis === B D Coelacanth === B D Painted turtle === B D Turkey === Inserts between block 39 and 40 in window B D Dog 3150bp Alignment block 40 of 47 in window, 37092708 - 37092708, 1 bps B D Mouse a B D Rat a B D Kangaroo rat a B D Naked mole-rat a B D Squirrel a B D Human a B D Chimp a B D Gorilla a B D Orangutan a B D Gibbon a B D Marmoset a B D Squirrel monkey a B D Mouse lemur a B D Tree shrew a B D Elephant a B D Manatee a B D Armadillo a B D Pig - B D Rabbit = B D Guinea pig = B D Cow - B D Rhesus = B D Horse - B D Panda = B D Bushbaby = B D Dog = B D Sheep - B D Alpaca - D Little brown bat = B D Dolphin - B D Megabat - B D Shrew = B D Sloth = B D Hedgehog = B D Tarsier = B D Wallaby = B D Cat - B D Rock hyrax = B D Opossum = B D Lizard = B D Budgerigar = B D Tasmanian devil = B D Platypus = B D Zebrafish = B D Zebra finch = B D Baboon = B D Chicken = B D X. tropicalis = B D Coelacanth = B D Painted turtle = B D Turkey = Inserts between block 40 and 41 in window B D Orangutan 3500bp B D Marmoset 4427bp B D Squirrel monkey 13811bp Alignment block 41 of 47 in window, 37092709 - 37092710, 2 bps B D Mouse ga B D Rat aa B D Kangaroo rat aa B D Naked mole-rat aa B D Squirrel ag B D Human -a B D Chimp -a B D Gorilla -a B D Gibbon aa B D Mouse lemur aa B D Pig aa B D Alpaca aa B D Dolphin aa B D Sheep aa B D Cow aa B D Cat aa B D Horse aa B D Megabat aa B D Elephant aa B D Manatee aa B D Armadillo aa B D Rabbit == B D Guinea pig == B D Rhesus == B D Panda == B D Bushbaby == B D Dog == B D Orangutan == B D Squirrel monkey == B D Marmoset == D Little brown bat == B D Shrew == B D Sloth == B D Hedgehog == B D Tarsier == B D Wallaby == B D Rock hyrax == B