Multiz Alignments of 60 Vertebrates

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Capitalize exons based on show bases

Place cursor over species for alignment detail. Click on 'B' to link to browser for aligned species, click on 'D' to get DNA for aligned species.
Alignment block 1 of 736 in window, 56699681 - 56699683, 3 bps B D Mouse aa--------------------------------c---------- B D Rat aaacaaacaacaaacaaaaatcaaaacaagactcc---------- B D Kangaroo rat ag--------------------------------g---------- B D Naked mole-rat ag--------------------------------g---------- B D Squirrel aa------------------------------------------- B D Rabbit gg--------------------------------g---------- B D Pika ag--------------------------------a---------- B D Human --------------------------------------------- B D Chimp --------------------------------------------- B D Gorilla --------------------------------------------- B D Orangutan --------------------------------------------- B D Gibbon --------------------------------------------- B D Rhesus --------------------------------------------- B D Baboon --------------------------------------------- B D Marmoset --------------------------------------------- B D Tarsier --------------------------------------------- B D Mouse lemur --------------------------------------------- B D Bushbaby --------------------------------------------- B D Tree shrew --------------------------------------------- B D Pig --------------------------------------------- B D Alpaca --------------------------------------------- B D Cow --------------------------------------------- B D Cat --------------------------------------------- B D Dog --------------------------------------------- B D Panda --------------------------------------------- D Little brown bat --------------------------------------------- B D Megabat --------------------------------------------- B D Hedgehog --------------------------------------------- B D Shrew --------------------------------------------- B D Elephant --------------------------------------------- B D Rock hyrax --------------------------------------------- B D Tenrec --------------------------------------------- B D Manatee --------------------------------------------- B D Armadillo --------------------------------------------- B D Sloth --------------------------------------------- B D Opossum -----------------------------------aaagaaccac B D Tasmanian devil -----------------------------------gaaaa--cat B D Guinea pig NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN B D Squirrel monkey ============================================= B D Horse ============================================= B D Wallaby ============================================= B D Sheep ============================================= B D Stickleback ============================================= B D Tetraodon ============================================= B D Fugu ============================================= B D Medaka ============================================= B D Atlantic cod ============================================= B D Nile tilapia ============================================= B D X. tropicalis ============================================= B D Platypus ============================================= B D Turkey ============================================= B D Coelacanth ============================================= B D Lizard ============================================= B D Budgerigar ============================================= B D Zebra finch ============================================= B D Chicken ============================================= B D Painted turtle ============================================= B D Dolphin NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN Inserts between block 1 and 2 in window B D Tree shrew 7bp B D Pig 23bp B D Alpaca 22bp B D Cow 24bp B D Cat 12bp B D Dog 12bp B D Panda 12bp D Little brown bat 22bp B D Megabat 23bp B D Hedgehog 25bp B D Shrew 23bp B D Elephant 33bp B D Rock hyrax 33bp B D Tenrec 23bp B D Manatee 33bp B D Armadillo 23bp B D Sloth 15bp Alignment block 2 of 736 in window, 56699684 - 56699758, 75 bps B D Mouse -----------cctctttcaat--ccattccct-gggagatcaag------a-ag---------ggagaa B D Rat -----------tctctttcaat--ccgttccct-gggagatcaag------g-ag---------gaagaa B D Kangaroo rat -----------tttctttta----ctttcccct-ggggttccaga------a-ag---------ggag-- B D Naked mole-rat -----------tttcttccact--catttccct-gggagaccaaa------gcag---------ggag-- B D Squirrel -----------tttcttcca----------------------cgg------a-aa---------ggagga B D Rabbit -----------tttctttcactcgctttcctcg-gggtagtgaag------a-gg---------ggagga B D Pika -----------ttttctccactaacagtcttcg-gagtagcgcag------a-gg---------gcagct B D Human -----------tttcttccact--cctttgccc-tgggagagcaa------a-gg---------ggcgaa B D Chimp -----------tttcttccact--cctttgccc-tgggagagcaa------a-gg---------ggcgga B D Gorilla -----------tttcttccact--cctttgccc-tgggagagcaa------a-gg---------ggcgga B D Orangutan -----------tttcttccact--cctttgccc-tgggagagcaa------a-gg---------ggcgga B D Gibbon -----------tttcttccact--cctttgccc-tgggagagcga------a-gg---------ggcgga B D Rhesus -----------tttcttccact--cctttgccc-tgggagagcgg------a-gg---------gtcgga B D Baboon -----------tttcttccact--cctttgccc-tgggagagcgg------a-gg---------ggcgga B D Marmoset -----------tttcttccact--cctttgccc-tgggagagcgg------a-gg---------agtgga B D Squirrel monkey -----------tttcttccact--cctttgccc-tgggagagcgg------a-gg---------agggga B D Tarsier -----------tttctaccacc--catttccgc-gtggagtgagg------a-gg---------gatgga B D Mouse lemur -----------tttcttccact--tatttcctg-ggagagtgaag------a-gg---------ggagga B D Bushbaby -----------tttcttccact--tttttcctt-ggggattgagg------a-gg---------ggagga B D Tree shrew -----------tttcttccact--tattccctg-ggggagccaaa------a-gg---------ggagga B D Pig -----------ttccttccatt--cgttttccc-cggggagagag------g-at---------gggaag B D Alpaca -----------ttccttccact--cgtttcctc-gggagagcgag------g-ag---------aggagg B D Cow -----------ttccttccact--cgtttcc-c-aggggagcgag------g-ac---------gggagg B D Cat -----------ttctttccatt--cgattcctc-gggggagcgagcagggcg-gg---------gggagg B D Dog -----------ttccttccatt--cgcttcccc-gggggaacaag------g-ag---------aggagg B D Panda -----------ttccttccatt--cgattcccc-gggggaatgag------g-ag---------gggagg D Little brown bat -----------ttccctccgcg--gggttctct-gaagagcc-------------------------agg B D Megabat -----------atccttccact--cgtttctcc-aggggagcgag------t-ag---------gggaga B D Hedgehog -----------ctcttctgact--ttgtggtgc---acta-------------ag---------aggggg B D Shrew -----------ttctttccact--tgtttcccc-agactagcgag------g-ag---------gggagg B D Elephant -----------tttcttccact--cgttttccc-gggggagcgag------g-acagaaggaggaggagg B D Rock hyrax -----------tttctttcact--cgttttcccaggggaagtgag------g-ac---------aggagg B D Tenrec -----------tttctttcact--ccttgtcacggagaaagccgg------g-ca---------aggagg B D Manatee -----------tttcttccatt--cgttttcct-gggggagcgag------g-ag---------aggagg B D Armadillo -----------ttttttccact--cgtttcccc-gggggagcgag------g-aa---------gggcag B D Sloth -----------tttcttccact--cattttccc-gggggagcgag------g-aa---------gggagg B D Opossum actttcccagatttcttcctcc--tgttttccc-actaaagtcag------g-ca--------------- B D Tasmanian devil gctttctc--atttcctcctc----gtttctcc-attaaagtcag------g-tg--------------- B D Guinea pig NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN B D Horse ====================================================================== B D Wallaby ====================================================================== B D Sheep ====================================================================== B D Stickleback ====================================================================== B D Tetraodon ====================================================================== B D Fugu ====================================================================== B D Medaka ====================================================================== B D Atlantic cod ====================================================================== B D Nile tilapia ====================================================================== B D X. tropicalis ====================================================================== B D Platypus ====================================================================== B D Turkey ====================================================================== B D Coelacanth ====================================================================== B D Lizard ====================================================================== B D Budgerigar ====================================================================== B D Zebra finch ====================================================================== B D Chicken ====================================================================== B D Painted turtle ====================================================================== B D Dolphin NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN Mouse aggaaatc-taatgct-----------gact-taggaa--a-----aga-------------a-----ag Rat agaaaatc-taatgct-----------gcct-taggaa--a-----cga-------------agaaagga Kangaroo rat -----------------------------tt-tggggg--a-----tgg-------------g-----gg Naked mole-rat -------------------------------------a--a-----ggg-------------a-----aa Squirrel gggaaatc-cagggct-----------g-ct-tgaaaa--c-----aaa-------------a-----gg Rabbit gggaaatc-gaaggtt-----------a---------g--c-----aga-------------a-----aa Pika gggaaatc-gaaggtt-----------g---------g--t-----ggg-------------a-----aa Human gggaaatc-aaaaacc-----------g---------g--t-----tga-------------a-----aa Chimp gggaaatc-aaaaacc-----------g---------g--t-----tga-------------a-----aa Gorilla gggaaatc-aaaaacc-----------g---------g--t-----tga-------------a-----aa Orangutan ggcaaacc-aaaaagc-----------g---------g--t-----tga-------------a-----aa Gibbon gggaaatc-aaaaacc-----------g---------g--t-----tga-------------a-----aa Rhesus gggaaata-aaatact-----------g---------g--t-----tga-------------a-----aa Baboon gggaaata-aaatact-----------g---------a--t-----tga-------------a-----aa Marmoset gggaaagc-aaagacc-----------g---------g--t-----tga-------------a-----aa Squirrel monkey gggaaatc-aaagacc-----------a---------g--t-----tga-------------a-----aa Tarsier gggaaatc-aagggct-----------g---------a--t-----tgaaaaataagaaatta-----aa Mouse lemur gggaaatc-aaaagct-----------g---------g--t-----tga-------------a-----aa Bushbaby gggaaatc-aaagtct-----------g---------g--t-----tga-------------a-----aa Tree shrew gggaaact-gaaggct-----------g---------a--t-----tga-------------a-----aa Pig aagaaacc-aaaggcc-----------g---------g--c---ccgaa-------------a-----a- Alpaca aggaaata-aaaggcc-----------a---------a--c-----tga-------------a-----a- Cow aggtaatc-aaaggcc-----------g---------t--tgggggtgg-------------g-----g- Cat agaaaatc-aaaggct---------------------t--t-----tga-------------a-----aa Dog agggaatc-aaaggct---------------------t--t-----tga-------------a-----aa Panda aggaaatc-aaaggct---------------------g--t-----gga-------------a-----ga Little brown bat aggaaatc-aaaggcc-----------g---------g--t-----tcg-------------g-----aa Megabat aggaaatc-aaaggcc-----------gtt-------g--t-----taa-------------a-----aa Hedgehog aggaaatc-taaggtc-----------t---------g--t-----tga-------------a-----aa Shrew aagaagccaaaaggcc-----------a---------g--a-----tga-------------a-----a- Elephant aaaaaatc-aaaggcc-----------g---------g--t-----aga-------------a-----aa Rock hyrax aagatatg-aaagggc-------ttttg---------g--a-----aaa-------------a-----ac Tenrec aggaactc-aaagaccagtgggggtgcg---------g--g-----ggt-------------g-----gg Manatee aggaaatc-aaaagca-----------g---------atta-----aaa-------------a-----aa Armadillo aggaaacc-aaaggcc-----------a---------g--t-----tga-------------g-----aa Sloth agaaaatc-aaaggcc-----------g---------g--t-----tga-------------g-----aa Opossum -gaaaaca-aaagtct-----------cact------t--t-----tga-------------a-----aa Tasmanian devil -gaaaata-aaagtct-----------ttgttttttct--t-----ttt-------------a-----aa Guinea pig NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN Horse ====================================================================== Wallaby ====================================================================== Sheep ====================================================================== Stickleback ====================================================================== Tetraodon ====================================================================== Fugu ====================================================================== Medaka ====================================================================== Atlantic cod ====================================================================== Nile tilapia ====================================================================== X. tropicalis ====================================================================== Platypus ====================================================================== Turkey ====================================================================== Coelacanth ====================================================================== Lizard ====================================================================== Budgerigar ====================================================================== Zebra finch ====================================================================== Chicken ====================================================================== Painted turtle ====================================================================== Dolphin NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN Mouse aaa----- Rat aaa----- Kangaroo rat caa----- Naked mole-rat taa----- Squirrel caa----- Rabbit -------- Pika gga----- Human aga----- Chimp aga----- Gorilla aga----- Orangutan aga----- Gibbon aga----- Rhesus aga----- Baboon aga----- Marmoset aga----- Squirrel monkey aga----- Tarsier aaa----- Mouse lemur aga----- Bushbaby aga----- Tree shrew aaa----- Pig -------- Alpaca -------- Cow -------- Cat agg----- Dog aag----- Panda agg----- Little brown bat aag----- Megabat aaa----- Hedgehog aga----- Shrew -------- Elephant aaa----- Rock hyrax aga----- Tenrec ggg----- Manatee aaa----- Armadillo aga----- Sloth aga----- Opossum aggaaaaa Tasmanian devil gcaaaaaa Guinea pig NNNNNNNN Horse ======== Wallaby ======== Sheep ======== Stickleback ======== Tetraodon ======== Fugu ======== Medaka ======== Atlantic cod ======== Nile tilapia ======== X. tropicalis ======== Platypus ======== Turkey ======== Coelacanth ======== Lizard ======== Budgerigar ======== Zebra finch ======== Chicken ======== Painted turtle ======== Dolphin NNNNNNNN Inserts between block 2 and 3 in window B D Pig 4bp B D Alpaca 4bp B D Cow 4bp B D Cat 6bp B D Dog 3bp B D Panda 10bp D Little brown bat 6bp B D Megabat 22bp B D Shrew 4bp B D Elephant 1bp B D Rock hyrax 1bp B D Tenrec 1bp B D Manatee 1bp B D Armadillo 1bp B D Sloth 1bp Alignment block 3 of 736 in window, 56699759 - 56699768, 10 bps B D Mouse ---------ggggaa---aaaa B D Rat ---------aaaaaa---aaaa B D Kangaroo rat ---------ggctgattgaaaa B D Naked mole-rat ---------agttcattgaaaa B D Squirrel ---------aaccca------c B D Rabbit -----------ggga------- B D Pika ---------gggggg------- B D Human ---------aaaaag------- B D Chimp ---------aaaaag------- B D Gorilla ---------aaaaag------- B D Orangutan ---------aaaaag------- B D Gibbon ---------aaaaaa------- B D Rhesus ---------aaaaaa------- B D Baboon ---------aaaaaa------- B D Marmoset ---------aaaaaa------- B D Squirrel monkey ---------aaaaaa------- B D Tarsier ---------aaaaaa------- B D Mouse lemur ---------aaaaaa------- B D Bushbaby ---------aaaaaa------- B D Tree shrew ---------aaatta------- B D Pig ---------aaaaaa------- B D Alpaca ---------aaaata------- B D Cow ---------ggggga------- B D Megabat ---------aagaaa------- B D Shrew ---------atcaaa------- B D Opossum tcttgttggaatagt------- B D Tasmanian devil tcttgctggaggaga------- B D Guinea pig NNNNNNNNNNNNNNNNNNNNNN B D Elephant ====================== B D Manatee ====================== B D Horse ====================== B D Panda ====================== B D Dog ====================== B D Tenrec ====================== B D Wallaby ====================== B D Sheep ====================== B D Stickleback ====================== B D Tetraodon ====================== B D Fugu ====================== B D Medaka ====================== B D Atlantic cod ====================== B D Nile tilapia ====================== B D X. tropicalis ====================== B D Platypus ====================== B D Turkey ====================== B D Coelacanth ====================== B D Lizard ====================== B D Budgerigar ====================== B D Zebra finch ====================== B D Chicken ====================== B D Painted turtle ====================== D Little brown bat ====================== B D Sloth ====================== B D Armadillo ====================== B D Cat ====================== B D Hedgehog ====================== B D Rock hyrax ====================== B D Dolphin NNNNNNNNNNNNNNNNNNNNNN Alignment block 4 of 736 in window, 56699769 - 56699814, 46 bps B D Mouse -----ttaaaaaac--------aaaa---ac------acttcagtca---ggcgtgggtgaa--acttaa B D Rat -----aaaaaaaaa--------aaaa---aa------acatccgcca---ggagtgggtgaa--acttaa B D Kangaroo rat -----agaaaacat--------aaaa---tc------ctgtctttcagccggcctggctgaaccgcttcg B D Naked mole-rat -----agaaaagcc--------ccaccttat------tcttcctgca---gatttgggtgaa--atgagt B D Squirrel -----caaaatccc--------aaac---ga------tcttcacgca---ggcaggggtgga--acgact B D Rabbit ----------------------aaac---tg------tcttcttgca---agcacgactgga-------- B D Pika ----------------------gagg---ga------gcttctccca---ggcgccgcggaa-------- B D Human -----------------------------tg------tcttccctca---ggcgtgggtcag--agaatt B D Chimp -----------------------------ta------tcttccctca---ggcgtgggtcag--agaatt B D Gorilla -----------------------------ta------tcttccctca---ggcgtgggtcag--agaatt B D Orangutan -----------------------------ta------tcttccctca---ggcgtgggtcag--agaatt B D Gibbon -----------------------------ta------tcttccctca---ggcgtgggtcgg--agaatt B D Rhesus -----------------------------ta------ttttccctca---ggcgtgggtcag--agaatt B D Baboon -----------------------------ta------ttttccctca---ggcgtgggtcag--agaatt B D Marmoset -----------------------------ta------tcttccctca---gac----gtcag--ataact B D Squirrel monkey -----------------------------ta------tcctccctca---ggcgtgggtcag--agaatt B D Tarsier -----------------------------aa------tcttccctca---ggcgtgggtgac--agaatt B D Mouse lemur -----------------------------aatatatatcttccttca---ggcgtgggtgag--agaact B D Bushbaby -----------------------------aa-aaaaatcctcccgca---ggcgtgggtgag--agaact B D Tree shrew -----------------------------ga---------------a---gacttgggagag--aacgcg B D Pig -------------------------g---ta------tcttcctgc----ggcctgggggcg--agagct B D Alpaca -------------------------g---ta------tcttcccgcg---ggcgtggaggac--agagct B D Cow -------------------------a---tg------tcttcccgcg---ggcgtggggcag--agagcg B D Cat ----------------------aaga---aa------ccttcccgca---ggcctcggtgaa--agagct B D Dog ----------------------gaaa---cc------ccttcccgca---ggcgtgggggag--agcgct B D Panda ----------------------aaaa---aa------tcttccctca---ggcctgggtcaa--agagct D Little brown bat -------------------------------------ccttcccgcc---ggcgagggtga--------- B D Megabat -----gaaaaaagt--------aaaa---ag------tcttcccgca---ggcgtgggtaag--agacct B D Hedgehog -----ttgaaaaag--------aaaa---aa------atatctcgca---ggggtgggcgtg--agctct B D Shrew -------------------------------------ttctctcgca---ggcctttgtgag--agagct B D Elephant ----------------------aaaa---aa------tctccccaca---ggcgtgggggaa--aaagct B D Rock hyrax ----------------------agaa---ac------atactcaaca---ggc-cagattaa--agagcc B D Tenrec ----------------------caac---tt------tctacccaca---ggggt----------gagtt B D Manatee ----------------------aaaa---aa------tcttcccaca---ggcatgggtgaa--agagct B D Armadillo ----------------------aaact--ta------tcttcccgca---ggcgtgattgaa--agagct B D Sloth ----------------------aaaat--ta------acttcccgca---ggcgtgggtgaa--agaact B D Opossum taagagaaagacccaggcc---attg---ca------tactcattct---gagtgg---agc--ataacc B D Tasmanian devil ttgcagcataagacaggctaaaaata---ct------ttttaattta---aaaagagatggc--ttggcc B D Guinea pig NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN B D Horse ====================================================================== B D Wallaby ====================================================================== B D Sheep ====================================================================== B D Stickleback ====================================================================== B D Tetraodon ====================================================================== B D Fugu ====================================================================== B D Medaka ====================================================================== B D Atlantic cod ====================================================================== B D Nile tilapia ====================================================================== B D X. tropicalis ====================================================================== B D Platypus ====================================================================== B D Turkey ====================================================================== B D Coelacanth ====================================================================== B D Lizard ====================================================================== B D Budgerigar ====================================================================== B D Zebra finch ====================================================================== B D Chicken ====================================================================== B D Painted turtle ====================================================================== B D Dolphin NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN Mouse ctc Rat ctc Kangaroo rat ctc Naked mole-rat aaa Squirrel cag Rabbit --- Pika --- Human tgg Chimp tgg Gorilla tgg Orangutan tgg Gibbon tgg Rhesus tgg Baboon tgg Marmoset cgg Squirrel monkey cgg Tarsier cgg Mouse lemur tgg Bushbaby tgg Tree shrew gag Pig g-- Alpaca g-- Cow g-- Cat c-- Dog g-- Panda g-- Little brown bat g-- Megabat g-- Hedgehog c-- Shrew g-- Elephant tgg Rock hyrax tgg Tenrec tgg Manatee tgg Armadillo cgg Sloth tgg Opossum c-- Tasmanian devil c-- Guinea pig NNN Horse === Wallaby === Sheep === Stickleback === Tetraodon === Fugu === Medaka === Atlantic cod === Nile tilapia === X. tropicalis === Platypus === Turkey === Coelacanth === Lizard === Budgerigar === Zebra finch === Chicken === Painted turtle === Dolphin NNN Inserts between block 4 and 5 in window B D Rat 2bp B D Kangaroo rat 2bp B D Naked mole-rat 2bp B D Squirrel 2bp B D Human 2bp B D Chimp 2bp B D Gorilla 2bp B D Orangutan 2bp B D Gibbon 2bp B D Rhesus 2bp B D Baboon 2bp B D Marmoset 2bp B D Squirrel monkey 2bp B D Tarsier 2bp B D Mouse lemur 2bp B D Bushbaby 2bp B D Tree shrew 2bp B D Pig 4bp B D Alpaca 2bp B D Cow 4bp B D Cat 4bp B D Dog 4bp B D Panda 4bp D Little brown bat 4bp B D Megabat 4bp B D Hedgehog 4bp B D Shrew 4bp B D Elephant 2bp B D Rock hyrax 2bp B D Tenrec 2bp B D Manatee 2bp B D Armadillo 2bp B D Sloth 2bp Alignment block 5 of 736 in window, 56699815 - 56699896, 82 bps B D Mouse ------aggcctactt--ttagg---------------cc-gttaaaacgt-ct-cc-aggcc---ctag B D Rat ------aggcctactt--tcagg---------------cc-attaaaactt-ct-cc-aggcc---ctag B D Kangaroo rat ------aggcctactc--ttag-----------------c-gagggaaccc-ca-ct-agcc-------- B D Naked mole-rat ------gggcctactc--tcagg---------------cg-agtagaacat-cc-cc-aggtc---tcgg B D Squirrel ------aggcctactc--ttagg---------------cg-agtacaactt-ta-ct-aggtc---ctgg B D Rabbit ------aggcctggtc--tcagg---------------cg-aggcgaactt-ca-cc-aggcc------- B D Pika ------aggcctcttt--tcagg---------------ag-agtgacactt-gg-cc-ag---------- B D Human ------aggcctactc--tgagg---------------gg-agtaaaactt-ca-cc-aggcc---ctgg B D Chimp ------aggcctactc--tgagg---------------gg-agtaaaactt-ca-cc-aggcc---ctgg B D Gorilla ------aggcctactc--tgagc---------------gg-agtaaaactt-ca-cc-aggcc---ctgg B D Orangutan ------aggcctactc--tcagg---------------cg-agtaaaactt-ca-cc-aggcc---ctgg B D Gibbon ------aggcctgctc--tcagg---------------cg-agtaaaactt-ca-cc-aggcc---ctgg B D Rhesus ------aggcctactc--tcagg---------------ca-agtaaaactt-ca-cc-agg-c---ctgg B D Baboon ------aggcctactc--tcagg---------------ca-agtaaaactt-ca-cc-agg-c---ctgg B D Marmoset ------aggcctgcat--tcagg---------------cg-agtaaagctt-ca-cc-aggcc---ctgg B D Squirrel monkey ------aggcctgcac--tcagg---------------cg-agtaaagctt-ca-cc-aggcc---ctgg B D Tarsier ------aggcctactc----acg---------------cg-agcaaaactt-ca-cc-aggcc---ctgt B D Mouse lemur ------aggcctattc--tctgg---------------ca-agtaaaactt-ct-cc-aggct---ctgg B D Bushbaby ------aggcctactc--tcagg---------------cg-agtgaaactt-ct-cc-aggcc---tggg B D Tree shrew ------agatctattc--tcaaa---------------gg-aataaaacttccg-cc-gggtc---gcca B D Pig ------aggcctactc--cgagg---------------cg-ggt-cacctt-cg-cc--ggcc---ctgg B D Alpaca ------agtcttactc--cgagg---------------cg-agt-cacctt-ca-cc-cggcc---ccgg B D Sheep ------aggcctactc--cgagg---------------c---gt-cacctg-gg-cc-gggcc---ctgg B D Cow ------aggcctactc--cgagg---------------c---gt-cacctg-gg-cc-ggggc---ctgg B D Cat ------aggcctactc--tga-g---------------cg-agt-cagcgt-cg-cg-gggcc---ctgg B D Dog ------aggcctacgc--cgagg---------------gg-cgt-gaactg-cg-cc-ggggc---ccgg B D Panda ------aggcctaccc--cgagg---------------ag-agc-aaactt-cg-cc--gggc---ccgg D Little brown bat ------aggcctattc--gcaggcgcaggcggtgaacttg-agt-gaactt-cg-ag-gggc----ccgg B D Megabat ------aggcctactc--cgagg---------------gg-agt-agattt-ca-cc-cggcg---ctgg B D Hedgehog ------agagcttttt----------------------------------t-ct-ca-----------gt B D Shrew ------aggcccacttagagagg---------------cg-agt-gcacgt-cc-ca--ggcc---ttgc B D Elephant ------gggcctactc--tgagg---------------ag-tgtaaaaatc-ca-cccaggcc---ctgg B D Rock hyrax ------aagc---------------------------------taggaatg-ca-cccaggcg---ctgg B D Tenrec ------aggcctactc--cgagg---------------cgaaataaaagtt-cc-cccaggcc---tgag B D Manatee ------gggcctactc--tgagg---------------cg-agtaaaaatc-ca-ctcaggcc---gtcg B D Armadillo ------aggcctactc--tgagg---------------tg-tgtaaaaaac-ca-cccaggcc---ctgg B D Sloth ------aggcctactc--tgaga---------------ag-tgtaaaaatc-ca-cccaggcc---ctgg B D Opossum ag-gctatacct------taaat---------------tc-aaa--aggac-ca-ag-agatatggtttg B D Tasmanian devil agtgctggg---------gaagg---------------gc-agggtaagac-cagag-aggaa---ttta B D Guinea pig NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN B D Horse ====================================================================== B D Wallaby ====================================================================== B D Stickleback ====================================================================== B D Tetraodon ====================================================================== B D Fugu ====================================================================== B D Medaka ====================================================================== B D Atlantic cod ====================================================================== B D Nile tilapia ====================================================================== B D X. tropicalis ====================================================================== B D Platypus ====================================================================== B D Turkey ====================================================================== B D Coelacanth ====================================================================== B D Lizard ====================================================================== B D Budgerigar ====================================================================== B D Zebra finch ====================================================================== B D Chicken ====================================================================== B D Painted turtle ====================================================================== B D Dolphin NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN Mouse actgaaa---actg----aggagtctatgcttaggcccagcgtc----ccta--------g Rat cctgaaa---acag----aggagtctgcgcctaggcccagcgtc----ctta--------g Kangaroo rat -ctgaaa---gaga----ggggggccgtgct--gggcccgcgcc----ct----------g Naked mole-rat tctgcaa---gctg----aggaggccgcttct-gggccagcgcc----ccag--------g Squirrel gctgtga---gtgg----tggaggccgcagatggccacagggac----cctc--------t Rabbit -ccgggg---gctg----gt--gtcggcccccggcgatgccgag----ggca--------g Pika -ccacgg---gctg----gc----------------------------------------g Human gctggaa---gcac----aggaggtcgcggctgggcccagcgcc----ctcg--------g Chimp gctggaa---gcac----aggaggtcgcggctgggcccagcgcc----ctcg--------g Gorilla gctggca---gcac----aggaggtcgcggctgggcccagcgcc----ctcg--------g Orangutan gctggaa---gcac----aggaggtcgcggctgggcccagcgcc----ctca--------g Gibbon gctggaa---gcac----aggaggtcgcggctgggtccagcgcc----ctcg--------g Rhesus gttggaa---gcac----aggaggtcgcggctgggcctagcgcc----ctcg--------g Baboon gttggaa---gcac----aggaggtcgcggctgggcctagcgcc----ctcg--------g Marmoset gctggaa---gcaccggacggaggtcgcggctgggcccagcgcc----ctcg--------g Squirrel monkey gctggaa---gcaccggacggaggtcgcggctgggcccagcgcc----ctcg--------g Tarsier actggaa---gcag----aggaggccgcggctggaccccgcgcc----cctg--------g Mouse lemur gctggat---gcgg----aggaggccgcggctgggcccagaacc----ttgg--------- Bushbaby gctgg-----------------ggctgtaactgggcccagcgtc----cgag--------- Tree shrew gctagaa---gctg----agaaggtcctggctg------gtgct----cttg--------g Pig gctgcca---gcgg----gagaga-------cccggcccgcgcc----cccg--------g Alpaca gctgcca---gccg----gggaggccc--gccgggccccgcgcc----cccg--------g Sheep gctgccg---gccg----gagagg-------cgggccccgcacc----cctt--------g Cow gctgccg---gccg----gagagg-------tgggccccgcgcc----cctg--------g Cat gctgaaa---gccg----gcgaggccgcgcctgggaccagcgcc----cccg--------g Dog gctgcga---gccg----ccgaggccgcg--------------------ccg--------g Panda gctggaa---gccg----gcgaggccgcgcctgggcccagcgcc----cccg--------g Little brown bat gctgcga---gccg----cagaggcagcgcctgggc------------------------- Megabat gctggaa---gccg----gagaggccgcgcctgcgcccggtgcc----cctg--------a Hedgehog gttacaaactgtca----c-tagac----cctggacaccgtactcctgcctg--------g Shrew gctggaa---gtca----g-ggggccctgcctgggtcccgcgct----cctg--------g Elephant actggaa---gcgg----aggaggccgcggttgggcccagagcc----cctg--------g Rock hyrax actggaa---gcag----aggaggccgcggctgggcccagagcc----cctg--------g Tenrec gctagaa---tcga----aggaggagacggctggggcccgcgtc----cccg--------g Manatee actggaa---gcaa----aggaggccgcggctgggcccagagcc----cctg--------g Armadillo gctggaa---gcca----aggcggcggcggctgggccc-gcgct----agcg------gcg Sloth gctggaa---gcag----aggaggccgcggctggacccagtgct----agca--------g Opossum gcctagt---gctg----agga----------gggctgagggaa----gacaaaagag--- Tasmanian devil actgaat---tctg----cagac------tctggatttagaagc----atca--------- Guinea pig NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN Horse ============================================================= Wallaby ============================================================= Stickleback ============================================================= Tetraodon ============================================================= Fugu ============================================================= Medaka ============================================================= Atlantic cod ============================================================= Nile tilapia ============================================================= X. tropicalis ============================================================= Platypus ============================================================= Turkey ============================================================= Coelacanth ============================================================= Lizard ============================================================= Budgerigar ============================================================= Zebra finch ============================================================= Chicken ============================================================= Painted turtle ============================================================= Dolphin NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN Alignment block 6 of 736 in window, 56699897 - 56699919, 23 bps B D Mouse ------ga------ggc--------c--t------------agttcaggg----gagttga B D Rat ------ga------ggc--------c--t------------agtgcaggg----gagtgga B D Kangaroo rat ------ca------ggc--------c--c------------agagcagga----gctttga B D Naked mole-rat ------ga------ggc--------c--t------------agcgcaggg----gccgc-- B D Squirrel ------gg------gccaccctcttc--c------------cgcccccgg----gagca-- B D Rabbit ------gg------ggc--------c--t------------ag------------------ B D Pika ------ga------gtc--------c--t------------gg------------------ B D Human ------ga------ggc--------c--a------------agggcaggg----agccga- B D Chimp ------ga------ggc--------c--a------------agggcaggg----agccga- B D Gorilla ------ga------ggc--------c--a------------agggcaggg----agccga- B D Orangutan ------ga------ggc--------c--a------------agggcaggg----agccga- B D Gibbon ------ga------ggc--------c--a------------agggcaggg----agccga- B D Rhesus ------ga------ggc--------c--a------------agggcaggg----ggccga- B D Baboon ------ga------ggc--------c--a------------agggcaggg----ggccga- B D Marmoset ------ga------gac--------c--g------------agggcaggg----ggccga- B D Squirrel monkey ------ga------ggc--------c--g------------agggcaggg----ggccga- B D Mouse lemur ------ga------ggc--------c--t------------agggcaggc----tgccga- B D Bushbaby ------ca------ggc--------t--t------------agggaaggcagggggtcca- B D Tree shrew ------ga------ggc--------c--t------------agggcaaat----agacga- B D Pig ------ga------ggc--------c--g------------agggcaggg----ggccga- B D Alpaca ------ga------ggc--------c--g------------agggcaggg----ggccgg- B D Sheep ------ga------ggc--------g--g------------agggcaggg----ggccga- B D Cow ------ga------ggc--------g--g------------agggcaggg----ggccga- B D Cat ------ga------ggc--------c--g------------agggcaggg----gtcgga- B D Dog ------ga------ggt--------c--g------------ggggcaggg----gtcggc- B D Panda ------ga------ggt--------c--g------------agggcaggg----gtcgga- D Little brown bat --------------ggt--------c--g------------ggcccggag----ctcag-- B D Megabat ------aggcggagggc--------a--g------------gggacggag----gtcgga- B D Hedgehog ------ga------ggc--------c--a-------gcacaaggtggggg----ggcagt- B D Shrew ------ga------ggc--------c--aagggcaggcacgaggcaaagg----acctgg- B D Elephant ------ga------ggc--------c--g------------agggcaggg----ggccga- B D Rock hyrax ------ga------ggt--------a--g------------agggcaggg----cgctga- B D Tenrec ------ga------gtt--------c--g------------aaggcaggg----ggtcgc- B D Manatee ------ga------ggc--------c--g------------agggcaggg----tgccaa- B D Armadillo ------ga------ggt--------g--g------------agggcaa-g----ggccgc- B D Sloth ------ga------gtt--------g--g------------agagcaagg----ggctga- B D Opossum gagtttga------gct--------ttgc------------tga----------------- B D Tasmanian devil ----ttta------gct--------c--c------------ttt----------------- B D Guinea pig NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN B D Horse ============================================================= B D Tarsier NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN B D Wallaby ============================================================= B D Stickleback ============================================================= B D Tetraodon ============================================================= B D Fugu ============================================================= B D Medaka ============================================================= B D Atlantic cod ============================================================= B D Nile tilapia ============================================================= B D X. tropicalis ============================================================= B D Platypus ============================================================= B D Turkey ============================================================= B D Coelacanth ============================================================= B D Lizard ============================================================= B D Budgerigar ============================================================= B D Zebra finch ============================================================= B D Chicken ============================================================= B D Painted turtle ============================================================= B D Dolphin NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN Inserts between block 6 and 7 in window B D Naked mole-rat 1bp Alignment block 7 of 736 in window, 56699920 - 56699952, 33 bps B D Mouse cc--aaaggtctta-----------------gcc--------t--agg----------acctttgt---- B D Rat cc--aaaggtctta-----------------gcc--------t--agg----------acctttgtggta B D Naked mole-rat ccgaagaggtcgta-----------------gcc--------ccgggg----------gcgcttg----- B D Squirrel cc--cgggttgctg-----------------ggc--------t--agg----------ttcc-------- B D Rabbit -c--cgaggtcgcg-----------------ggt--------g--cg----------------------- B D Pika -c--cgaggtctgg-------------------------------------------------------- B D Human cc--caaggtctaa-----------------gcc--------c--tcc----------agctctc-cgtc B D Chimp cc--caaggtctaa-----------------gcc--------c--tcc----------agctctc-cgtc B D Gorilla cc--caaggtctaa-----------------gcc--------c--tcc----------agctctc-cgtc B D Orangutan cc--caaggtctaa-----------------gcc--------c--tcc----------agctctg-cgtc B D Gibbon cc--caaggtctaa-----------------gcc--------c--tcc----------agctctc-cgtc B D Rhesus cc--caaggtctta-----------------gcc--------c--tcc----------agctctc-cgtc B D Baboon cc--caaggtctta-----------------gcc--------c--tac----------agctctc-cgtc B D Marmoset cc--caaggtctga-----------------gcc--------c--tcg----------agctctctcgtc B D Squirrel monkey cc--caaggtctga-----------------gcc--------c--tcg----------agccctctcgtc B D Mouse lemur ac--cgaggtcgga-----------------gcc--------c--tgg----------tgctttctagtc B D Bushbaby cc--cgaggccgga-----------------gtc--------c--agg----------cgctttctaggc B D Tree shrew tc--cgagatcgga-----------------gct--------c--tag----------tgctctctgatc B D Pig -c--cgaggtcgca-----------------agc--------c--tcg----------cgctcgc----- B D Alpaca -c--cgaggtcgcc-----------------gcc--------c--tcg----------tgctccc----- B D Sheep -c--cgaggtcgcg-----------------gcc--------c--cgg----------cgctcgc----- B D Cow -c--cgaggtcgcg-----------------gcc--------c--tgg----------cgctcgc----- B D Cat -------------------------------gcc--------c--tgg----------agctcgc----- B D Dog -------------------------------gcc--------c--cgg----------agctcgc----- B D Panda -------------------------------gcc--------c--tgg----------agctcgc----- D Little brown bat ------------------------------------------t--agg----------cgtctgg----- B D Megabat -------------------------------gcc--------c--tag----------cgctcgc----- B D Hedgehog -------------------------------gtcaaccaaggt--cagcccaagtgcctgctgcc----- B D Shrew -------------------------------g-------agac--tag----------tattg-c----- B D Elephant cc--cgaggtcgga-----------------gtc--------c--tcg----------tgccctctggtc B D Rock hyrax cc--cggggttggg-----------------gtc--------c--tcg----------ttctgtctagtc B D Tenrec cc--caaggtcggg-----------------gc------------------------------------- B D Manatee ct--cggggtcgga-----------------acc--------c--tgg----------tgctctctggtc B D Armadillo cc--ggaggtcagc-----------------gcc--------t--tcg----------cgctctctggtc B D Sloth cg--cgaggtcgga-----------------gcc--------c--ttg----------cgctctccgg-- B D Opossum ct--cgggatttagagacatcacttcactccttt--------c--tgg----------agat-------- B D Tasmanian devil ct--ggagattttaggcaag-----------ttt--------g--agg----------agat-------- B D Guinea pig NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN B D Horse ====================================================================== B D Tarsier NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN B D Wallaby ====================================================================== B D Stickleback ====================================================================== B D Tetraodon ====================================================================== B D Fugu ====================================================================== B D Medaka ====================================================================== B D Atlantic cod ====================================================================== B D Nile tilapia ====================================================================== B D X. tropicalis ====================================================================== B D Platypus ====================================================================== B D Turkey ====================================================================== B D Coelacanth ====================================================================== B D Lizard ====================================================================== B D Budgerigar ====================================================================== B D Zebra finch ====================================================================== B D Chicken ====================================================================== B D Painted turtle ====================================================================== B D Kangaroo rat NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN B D Dolphin NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN Mouse ---------ggtctt Rat ggggattcgggtctt Naked mole-rat ---------ggtcgc Squirrel ---------ggccgc Rabbit ---------ggtctc Pika --------------- Human gcgggtttgggtccc Chimp gcgggtttgggtccc Gorilla gcgggtttgggtccc Orangutan gcgggtttgtgtccc Gibbon gcgggtttgggtccc Rhesus gcgggtttgggtccc Baboon gcgggtttgggtccc Marmoset gcttacttgggtccc Squirrel monkey gcggatttgggtccc Mouse lemur gcgga-gcgggtccc Bushbaby taggattccggtccg Tree shrew gagggttcgggtccc Pig --------gggtggg Alpaca --------gggtcgc Sheep --------gggtcgc Cow --------gggtcgc Cat --------gggtcgc Dog --------cggtcgc Panda --------tggtcgc Little brown bat --------gggtggg Megabat --------tggtcgc Hedgehog --------ggaccct Shrew --------gggtcac Elephant ttgggttcgggtcca Rock hyrax tcgggttcaggtcct Tenrec -----ttcgggtcct Manatee gcgggttcgggtcca Armadillo gtgggttcgggtccc Sloth --------------- Opossum --------------- Tasmanian devil --------------- Guinea pig NNNNNNNNNNNNNNN Horse =============== Tarsier NNNNNNNNNNNNNNN Wallaby =============== Stickleback =============== Tetraodon =============== Fugu =============== Medaka =============== Atlantic cod =============== Nile tilapia =============== X. tropicalis =============== Platypus =============== Turkey =============== Coelacanth =============== Lizard =============== Budgerigar =============== Zebra finch =============== Chicken =============== Painted turtle =============== Kangaroo rat NNNNNNNNNNNNNNN Dolphin NNNNNNNNNNNNNNN Inserts between block 7 and 8 in window B D Pig 13bp B D Alpaca 13bp B D Sheep 13bp B D Cow 13bp B D Cat 13bp B D Dog 13bp B D Panda 13bp D Little brown bat 5bp B D Megabat 13bp B D Hedgehog 13bp B D Shrew 13bp Alignment block 8 of 736 in window, 56699953 - 56699956, 4 bps B D Mouse gtc-t B D Rat gtc-t B D Naked mole-rat gtcgt B D Squirrel gtc-t B D Rabbit gtc-t B D Pika gtc-t B D Human gtc-t B D Chimp gtc-t B D Gorilla gtc-t B D Orangutan gtc-a B D Gibbon gtc-t B D Rhesus atc-t B D Baboon atc-t B D Marmoset gtc-t B D Squirrel monkey gtt-t B D Mouse lemur ctc-t B D Bushbaby gtc-t B D Tree shrew ttc-t B D Pig gtc-t B D Alpaca gtc-t B D Dolphin gtc-t B D Sheep gtc-t B D Cow gtc-t B D Cat gtc-t B D Dog gtc-t B D Panda gtc-t B D Megabat gtc-t B D Hedgehog ctt-t B D Shrew gtc-t B D Elephant gtc-t B D Rock hyrax gtc-t B D Tenrec gtc-t B D Manatee gtc-t B D Armadillo acc-t B D Guinea pig NNNNN B D Horse ===== B D Tarsier NNNNN B D Wallaby ===== B D Stickleback ===== B D Tetraodon ===== B D Fugu ===== B D Medaka ===== B D Atlantic cod ===== B D Nile tilapia ===== B D X. tropicalis ===== B D Platypus ===== B D Turkey ===== B D Coelacanth ===== B D Tasmanian devil ----- B D Opossum ----- B D Lizard ===== B D Budgerigar ===== B D Zebra finch ===== B D Chicken ===== B D Painted turtle ===== D Little brown bat ===== B D Sloth ----- B D Kangaroo rat NNNNN Alignment block 9 of 736 in window, 56699957 - 56699962, 6 bps B D Mouse c-aggag B D Rat c-aggag B D Naked mole-rat g-tgggg B D Squirrel c-cggag B D Rabbit c-aggag B D Pika t-tgga- B D Human c-aagag B D Chimp c-aagag B D Gorilla c-aagag B D Orangutan c-aagag B D Gibbon c-aagag B D Rhesus c-aagag B D Baboon c-aagaa B D Marmoset c-atgag B D Squirrel monkey c-ttgag B D Mouse lemur c-aggag B D Bushbaby c-cggag B D Tree shrew c-aggag B D Pig c-aggag B D Alpaca c-aggag B D Dolphin cgaggga B D Sheep c-aggag B D Cow c-aggag B D Cat c-aggcc B D Dog c-cggag B D Panda c-aggaa B D Megabat c-aggca B D Hedgehog g-gggtg B D Shrew c-aggag B D Elephant c-tggag B D Rock hyrax c-tgcag B D Tenrec c-tggag B D Manatee c-tggag B D Armadillo c-gcgag B D Sloth ----aga B D Opossum --attag B D Tasmanian devil --gttag B D Platypus c-aggga B D Chicken c-aggag B D Guinea pig NNNNNNN B D Horse ======= B D Tarsier NNNNNNN B D Wallaby ======= B D Stickleback ======= B D Tetraodon ======= B D Fugu ======= B D Medaka ======= B D Atlantic cod ======= B D Nile tilapia ======= B D X. tropicalis ======= B D Turkey ======= B D Coelacanth ======= B D Lizard ======= B D Budgerigar ======= B D Zebra finch ======= B D Painted turtle ======= D Little brown bat ======= B D Kangaroo rat NNNNNNN Inserts between block 9 and 10 in window B D Human 1bp B D Chimp 1bp B D Gorilla 1bp B D Orangutan 1bp B D Gibbon 1bp B D Rhesus 1bp B D Baboon 1bp B D Marmoset 1bp B D Squirrel monkey 1bp B D Mouse lemur 1bp B D Bushbaby 1bp B D Tree shrew 1bp Alignment block 10 of 736 in window, 56699963 - 56699976, 14 bps B D Mouse gggg-gc--g----c---gg----g-------------ttg B D Rat ggggcgc--g----c---gg----g-------------ttg B D Naked mole-rat ggggagc--g----cggggg----g-------------tta B D Squirrel gggg-gcaag----c---gg----g-------------cag B D Rabbit ggggcgc--g----c---gg----g-------------ttg B D Pika ---------g----c---gg----g-------------ttg B D Human ggggcgc--g----c---gg----g-------------ctg B D Chimp ggggcgc--g----c---gg----g-------------ctg B D Gorilla ggggcgc--g----c---gg----g-------------ctg B D Orangutan ggggcgc--g----c---gg----g-------------ctg B D Gibbon ggggcgc--g----c---gg----g-------------ctg B D Rhesus ggggcgc--g----c---gg----g-------------ctg B D Baboon ggggcgc--g----c---gg----g-------------ctg B D Marmoset ggggcgt--g----c---gg----g-------------ctg B D Squirrel monkey ggggcgt--a----c---gg----g-------------ctg B D Mouse lemur gggacga--g----c---gg----g-------------ttg B D Bushbaby ggggcgc--g----c---ag----t-------------tgg B D Tree shrew ggggcgc--g----c---ga----g-------------ttg B D Pig ggggcgc--g----c---gg------------------ttg B D Alpaca ggggcgc--g----c---gc------------------tcg B D Dolphin ggggcgc--g----c---gg------------------tta B D Sheep ggggcgc--g----c---gg------------------tcg B D Cow ggggcgc--g----c---gg------------------tcg B D Cat ggggtgc--g----c---gg----g-------------ttg B D Dog ggggcgc--g----c---gg----g-------------tcg B D Panda ggggcgc--g----c---gg----g-------------ctg D Little brown bat ggggcgc--g----c---gg----t-------------tgg B D Megabat ggggcgc--a----c---gg----t-------------tta B D Hedgehog tgggggt--gggtag---gg----g-------------tga B D Shrew ggggcgc--g----c---tg----g-------------tgg B D Elephant ---------g----g---ag----g-------------ttg B D Rock hyrax ---------g----g---ac----g-------------gta B D Tenrec ---------g----g---ag----g-------------ctg B D Manatee ---------g----g---ac----g-------------ttg B D Armadillo ---------a----a---gcgcgcg-------------ccg B D Sloth ---------a----g---gcgcgtg-------------ttg B D Opossum gagaact--g----g---ag----gagagggtaaataactc B D Tasmanian devil atgtctc--t----c---aa----g-------------ctc B D Platypus gggaggg--a----a---gg----c-------------ccg B D Turkey -gagggc--g----a---gg----g-------------acg B D Chicken -----gc--g----a---gg----g-------------acg B D Guinea pig NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN B D Horse ========================================= B D Tarsier NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN B D Wallaby ========================================= B D Stickleback ========================================= B D Tetraodon ========================================= B D Fugu ========================================= B D Medaka ========================================= B D Atlantic cod ========================================= B D Nile tilapia ========================================= B D X. tropicalis ========================================= B D Coelacanth ========================================= B D Lizard ========================================= B D Budgerigar ========================================= B D Zebra finch ========================================= B D Painted turtle ========================================= B D Kangaroo rat NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN Alignment block 11 of 736 in window, 56699977 - 56699978, 2 bps B D Mouse a----a B D Rat a----g B D Naked mole-rat a----g B D Squirrel g----c B D Rabbit g----g B D Pika g----a B D Human g----g B D Chimp g----g B D Gorilla g----g B D Orangutan g----g B D Gibbon g----g B D Rhesus g----g B D Baboon g----g B D Marmoset g----g B D Squirrel monkey g----g B D Mouse lemur g----g B D Bushbaby g----a B D Tree shrew g----g B D Pig g----c B D Alpaca a----c B D Dolphin g----c B D Sheep g----c B D Cow g----c B D Cat g----a B D Dog g----c B D Panda g----a D Little brown bat g----a B D Megabat g----a B D Hedgehog atactc B D Shrew a----c B D Elephant g----g B D Rock hyrax g----g B D Manatee g----g B D Armadillo a----g B D Sloth a----g B D Opossum c----c B D Tasmanian devil a----c B D Platypus a----g B D Turkey g----c B D Chicken g----c B D X. tropicalis a----a B D Guinea pig NNNNNN B D Horse ====== B D Tarsier NNNNNN B D Tenrec ------ B D Wallaby ====== B D Stickleback ====== B D Tetraodon ====== B D Fugu ====== B D Medaka ====== B D Atlantic cod ====== B D Nile tilapia ====== B D Coelacanth ====== B D Lizard ====== B D Budgerigar ====== B D Zebra finch ====== B D Painted turtle ====== B D Kangaroo rat NNNNNN Inserts between block 11 and 12 in window B D Tasmanian devil 3bp B D Turkey 9bp B D Chicken 9bp Alignment block 12 of 736 in window, 56699979 - 56699991, 13 bps B D Mouse c-cccc-gcct-------gaaa B D Rat --cccc-gcct-------gaaa B D Naked mole-rat c-cttcaggct-------g--a B D Squirrel c-atca-gctt-------g--a B D Rabbit ctacca-acct-------g--a B D Pika c-accc-acct-------g--a B D Human c-ctccggcct-------g--a B D Chimp c-ctccggcct-------g--a B D Gorilla c-ctccggcct-------g--a B D Orangutan c-ctccggcct-------g--a B D Gibbon c-ctccggcct-------g--a B D Rhesus c-ctccggcct-------g--a B D Baboon c-ctccggcct-------g--a B D Marmoset c-ctccggcct-------g--a B D Squirrel monkey c-ctccggcct-------g--a B D Mouse lemur c-ctccagcct-------g--a B D Bushbaby c-ctccagcct-------g--a B D Tree shrew c-ctccagcct-------g--a B D Pig c-ctcggacct-------g--a B D Alpaca c-tc---acct-------g--a B D Dolphin c-ctccagcct-------g--a B D Sheep c-ctccagcct-------g--a B D Cow c-ctacagcct-------g--a B D Cat a-ccccagctt-------g--a B D Dog c-ctcccgctt-------g--a B D Panda t-ctgcggctt-------g--a D Little brown bat c-c-ccagcct-------g--a B D Megabat c-ctccagcct-------g--a B D Hedgehog t-gcttggactccagttgg--a B D Shrew t-gcgtggcct-------g--a B D Elephant g-ctccggtct-------g--a B D Rock hyrax g-ctgcagtct-------g--a B D Manatee g-ctccaa-ct-------g--a B D Armadillo c-ctctagcct-------g--a B D Sloth c-ctccagcct-------g--a B D Opossum a-ccccctccc-------a--a B D Tasmanian devil a-tcatttcat-------g--a B D Platypus g-ccc--gatt-------g--a B D Turkey g-gtctagctc-------t--a B D Chicken g-ctctacctc-------t--a B D Budgerigar c-tcctgcctc-------t--a B D X. tropicalis --cccttgcca----------- B D Guinea pig NNNNNNNNNNNNNNNNNNNNNN B D Horse ====================== B D Tarsier NNNNNNNNNNNNNNNNNNNNNN B D Tenrec ---------------------- B D Wallaby ====================== B D Stickleback ====================== B D Tetraodon ====================== B D Fugu ====================== B D Medaka ====================== B D Atlantic cod ====================== B D Nile tilapia ====================== B D Coelacanth ====================== B D Lizard ====================== B D Zebra finch ====================== B D Painted turtle ====================== B D Kangaroo rat NNNNNNNNNNNNNNNNNNNNNN Inserts between block 12 and 13 in window B D Opossum 54bp B D Tasmanian devil 28bp B D Platypus 2bp B D Turkey 1bp B D Chicken 1bp B D Budgerigar 1bp Alignment block 13 of 736 in window, 56699992 - 56700004, 13 bps B D Mouse tttctcttccacc--- B D Rat tctcccttccacc--- B D Naked mole-rat cttcttttcctcc--- B D Squirrel catcttctcctcc--- B D Rabbit caccttctcctcc--- B D Pika taccctctcccgc--- B D Human caccctctctt-c--- B D Chimp caccctctctt-c--- B D Gorilla caccctctctt-c--- B D Orangutan caccttctctt-c--- B D Gibbon caccttctctt-c--- B D Rhesus caccttctctc-c--- B D Baboon caccttctctc-c--- B D Marmoset caccttctcttcc--- B D Squirrel monkey caccttctcttcc--- B D Mouse lemur caccttctcctcc--- B D Bushbaby cacc-tctcctcc--- B D Tree shrew caccttctcctcc--- B D Pig tgccctctcctcc--- B D Alpaca cgccttctcctcc--- B D Dolphin cgccctctcctcc--- B D Sheep cggcctctcctcc--- B D Cow cggcctctcctcc--- B D Cat cgccttctcgtcc--- B D Dog cgccttctcctcc--- B D Panda cgccttctcctcc--- D Little brown bat cgcc--ccctttc--- B D Megabat agccttctcctcc--- B D Hedgehog tgctttctcttcc--- B D Shrew cgccttctgttct--- B D Elephant tgccttctcctcc--- B D Rock hyrax cgccttgtcc-cc--- B D Tenrec -accctttcctcc--- B D Manatee tgccttctcctcc--- B D Armadillo tgccttctcctcc--- B D Sloth cgccttctcctcg--- B D Opossum ---tttttcctgt--- B D Tasmanian devil ---tttctgcttt--- B D Wallaby ---tttctcctgt--- B D Platypus -ggcttgtccttg--- B D Turkey ccccttgtcccg---- B D Chicken ccccttgccccc---- B D Budgerigar cccctttccccc---- B D Lizard cttcctccctcc---- B D X. tropicalis -----tgtcccccacc B D Guinea pig NNNNNNNNNNNNNNNN B D Horse ================ B D Tarsier NNNNNNNNNNNNNNNN B D Stickleback ================ B D Tetraodon ================ B D Fugu ================ B D Medaka ================ B D Atlantic cod ================ B D Nile tilapia ================ B D Coelacanth ================ B D Zebra finch ================ B D Painted turtle ================ B D Kangaroo rat NNNNNNNNNNNNNNNN Inserts between block 13 and 14 in window B D Dolphin 1bp B D Sheep 3bp B D Cow 2bp B D Opossum 3bp B D Tasmanian devil 5bp B D Wallaby 3bp B D Platypus 1bp B D Turkey 4bp B D Chicken 4bp B D Budgerigar 7bp B D Lizard 7bp Alignment block 14 of 736 in window, 56700005 - 56700005, 1 bps B D Mouse t B D Rat t B D Naked mole-rat t B D Squirrel t B D Rabbit t B D Pika t B D Human t B D Chimp t B D Gorilla t B D Orangutan t B D Gibbon t B D Rhesus t B D Baboon t B D Marmoset t B D Squirrel monkey t B D Mouse lemur t B D Bushbaby t B D Tree shrew t B D Pig t B D Sheep c B D Cow c B D Cat t B D Dog t B D Panda t D Little brown bat t B D Megabat t B D Hedgehog t B D Shrew t B D Elephant t B D Rock hyrax t B D Tenrec t B D Manatee t B D Armadillo t B D Sloth t B D Opossum t B D Tasmanian devil t B D Wallaby t B D Platypus t B D Turkey t B D Chicken t B D Budgerigar t B D Lizard c B D X. tropicalis c B D Guinea pig N B D Horse = B D Tarsier N B D Alpaca N B D Stickleback = B D Tetraodon = B D Fugu = B D Medaka = B D Atlantic cod = B D Nile tilapia = B D Coelacanth = B D Zebra finch = B D Painted turtle = B D Kangaroo rat N B D Dolphin = Inserts between block 14 and 15 in window B D Mouse lemur 1bp Alignment block 15 of 736 in window, 56700006 - 56700024, 19 bps B D Mouse tctcaggagtgagcgacag B D Rat tctcaggagtgagcgacag B D Naked mole-rat tcccaggagtgagcgacag B D Squirrel tcccaggagtgagcgacag B D Rabbit t-ccaggagtgagcgacag B D Pika tcccaggagtgagcgacag B D Human ctccatcagtgagcgacag B D Chimp ctccatcagtgagcgacag B D Gorilla ctccatcagtgagcgacag B D Orangutan ctccagcagtgagcgacag B D Gibbon ctccagcagtgagcgacag B D Rhesus cttcagcagtgagcgacag B D Baboon cttcagcagtgagcgacag B D Marmoset ctccagcagtgagcgacag B D Squirrel monkey ctccagcagtgagcgacag B D Mouse lemur ccccagcagtgagcgacag B D Bushbaby ccccaggagtgagcgacag B D Tree shrew ccccaggagtgagcgacag B D Pig ccccaggcgtgagcgacag B D Dolphin ccccaggagtgagcgacag B D Sheep ccccaggagtgagcgacan B D Cow cctcaggagtgagcgacag B D Cat ccccaggagtgagcgacag B D Dog ccccaggcgtgagcgacag B D Panda ccccaggcgtgagcgacag D Little brown bat ccccaggagtgagcgacag B D Megabat ccccaggcgtgagcgacag B D Hedgehog ccccaggagtgagcgacag B D Shrew ccccaggagtgagcgacag B D Elephant ccctaggagtgagcgacag B D Rock hyrax ccccaggagtgagtgacag B D Tenrec ccgcaggagtgagcgacag B D Manatee ccctaggagtgagtgacag B D Armadillo ccctaggagtgagcgacag B D Sloth ccccaggagtgagcgatag B D Opossum ccaccacagtgagcgacag B D Tasmanian devil ctaccacagtgagcgacag B D Wallaby ccaccgcagtgagcgacag B D Platypus tccccgcagtgggcgacag B D Turkey tccc-gcagtgagtgacac B D Chicken tccc-tcagtgagcgacac B D Budgerigar tcccagcagtaagcgacac B D Lizard tctg-gccgggacggaggg B D Painted turtle tcccaacagtgagtgacag B D X. tropicalis ------tagtcagtgacac B D Guinea pig NNNNNNNNNNNNNNNNNNN B D Horse =================== B D Tarsier NNNNNNNNNNNNNNNNNNN B D Alpaca NNNNNNNNNNNNNNNNNNN B D Stickleback =================== B D Tetraodon =================== B D Fugu =================== B D Medaka =================== B D Atlantic cod =================== B D Nile tilapia =================== B D Coelacanth =================== B D Zebra finch =================== B D Kangaroo rat NNNNNNNNNNNNNNNNNNN Alignment block 16 of 736 in window, 56700025 - 56700029, 5 bps B D Mouse ctccc B D Rat ctccc B D Naked mole-rat ctccc B D Squirrel ctccc B D Rabbit ctccc B D Pika ctccc B D Human ctccc B D Chimp ctccc B D Gorilla ctccc B D Orangutan ctccc B D Gibbon ctccc B D Rhesus ctccc B D Baboon ctccc B D Marmoset ctccc B D Squirrel monkey ctccc B D Mouse lemur ctccc B D Bushbaby ctccc B D Tree shrew ctccc B D Pig ctccc B D Dolphin ctccc B D Cow ctccc B D Cat ctccc B D Dog ctccc B D Panda ctccc D Little brown bat ctccc B D Megabat ctccc B D Hedgehog ctcct B D Shrew ctccc B D Elephant ctccc B D Rock hyrax ctccc B D Tenrec ctccc B D Manatee ctccc B D Armadillo ctctc B D Sloth ctccc B D Opossum ctccc B D Tasmanian devil ttccc B D Wallaby ctccc B D Platypus ttccc B D Turkey ctctt B D Chicken ctcgt B D Budgerigar ctctc B D Lizard gcctg B D Painted turtle ctcgc B D X. tropicalis ctcgc B D Guinea pig NNNNN B D Horse ===== B D Tarsier NNNNN B D Alpaca NNNNN B D Sheep NNNNN B D Stickleback ===== B D Tetraodon ===== B D Fugu ===== B D Medaka ===== B D Atlantic cod ===== B D Nile tilapia ===== B D Coelacanth ===== B D Zebra finch ===== B D Kangaroo rat NNNNN Alignment block 17 of 736 in window, 56700030 - 56700040, 11 bps B D Mouse cctaccacagc B D Rat cctaccacagc B D Naked mole-rat cctaccatagc B D Squirrel cctaccacagc B D Rabbit cctaccacagc B D Pika cctaccacagc B D Human cctaccacagc B D Chimp cctaccacagc B D Gorilla cctaccacagc B D Orangutan cctaccacagc B D Gibbon cctaccacagc B D Rhesus cctaccacagc B D Baboon cctaccacagc B D Marmoset cctaccacagc B D Squirrel monkey cctaccacagc B D Mouse lemur cctaccacagc B D Bushbaby cctaccacagc B D Tree shrew cctaccacagc B D Pig cgtaccacagc B D Dolphin cctaccacagc B D Cow cctaccacagc B D Cat cctaccacagc B D Dog cctaccacagc B D Panda cctaccacagc D Little brown bat cctaccacagc B D Megabat cgtaccacagc B D Hedgehog cctaccacagc B D Shrew cctaccacagc B D Elephant cctaccacagc B D Rock hyrax cctaccacagc B D Tenrec cctaccacagc B D Manatee cctaccacagc B D Armadillo cctaccacagc B D Sloth cctaccacagc B D Opossum cctaccacagt B D Tasmanian devil cttttcatagt B D Wallaby cctaccacagt B D Platypus cctaccacagc B D Turkey cgtaccccagc B D Chicken cgtaccccagc B D Budgerigar cttaccccagc B D Lizard cctaccct--- B D Painted turtle cctatcacagc B D X. tropicalis cgtaccccagt B D Coelacanth cctatcccagt B D Guinea pig NNNNNNNNNNN B D Horse =========== B D Tarsier NNNNNNNNNNN B D Alpaca NNNNNNNNNNN B D Sheep NNNNNNNNNNN B D Stickleback =========== B D Tetraodon =========== B D Fugu =========== B D Medaka =========== B D Atlantic cod =========== B D Nile tilapia =========== B D Zebra finch =========== B D Kangaroo rat NNNNNNNNNNN Alignment block 18 of 736 in window, 56700041 - 56700041, 1 bps B D Mouse c B D Rat c B D Naked mole-rat c B D Squirrel c B D Rabbit c B D Pika c B D Human c B D Chimp c B D Gorilla c B D Orangutan c B D Gibbon c B D Rhesus c B D Baboon c B D Marmoset c B D Squirrel monkey c B D Mouse lemur c B D Bushbaby c B D Tree shrew c B D Pig c B D Dolphin c B D Cow c B D Cat c B D Dog c B D Panda c D Little brown bat c B D Megabat c B D Hedgehog c B D Shrew c B D Elephant c B D Rock hyrax c B D Tenrec c B D Manatee c B D Armadillo c B D Sloth c B D Opossum c B D Tasmanian devil c B D Wallaby c B D Platypus c B D Turkey c B D Chicken c B D Zebra finch c B D Budgerigar c B D Lizard c B D Painted turtle c B D X. tropicalis c B D Coelacanth g B D Fugu c B D Medaka c B D Zebrafish c B D Guinea pig N B D Horse = B D Tarsier N B D Alpaca N B D Sheep N B D Stickleback = B D Tetraodon = B D Atlantic cod = B D Nile tilapia = B D Kangaroo rat N Alignment block 19 of 736 in window, 56700042 - 56700070, 29 bps B D Mouse ccaaggtggaggagtggagcagcctgggc B D Rat ccaaggtggaggagtggagcagcctgggc B D Naked mole-rat ccaaggtggaggagtggagcagcctgggc B D Squirrel ccaaggtggaggagtggagcagcctgggc B D Rabbit ccaaggtggaggagtggagcagcctgggc B D Pika ccaaggtggaggagtggagcagcctggcc B D Human ccaaggtggaggagtggagcagcctgggc B D Chimp ccaaggtggaggagtggagcagcctgggc B D Gorilla ccaaggtggaggagtggagcagcctgggc B D Orangutan ccaaggtggaggagtggagcagcctgggc B D Gibbon ctaaggtggaggagtggagcagcctgggc B D Rhesus ccaaggtggaggagtggagcagcctgggc B D Baboon ccaaggtggaggagtggagcagcctgggc B D Marmoset ccaaggtggaggagtggagcagcctgggc B D Squirrel monkey ccaaggtggaggagtggagcagcctgggc B D Mouse lemur ccaaggtggaggagtggagcagcctgggc B D Bushbaby ccaaaatggaggagtggagcagcctgggc B D Tree shrew ccaaggtggaggagtggagcagcctgggc B D Pig ccaaggtggaggagtggagcagcctgggc B D Dolphin ccaaggtggaggagtggagcagcctgggc B D Cow ccaaggtggaggagtggagcagcctgggc B D Cat ccaaggtggaggagtggagcagcctgggc B D Dog ccaaggtggaggagtggagcagcctgggc B D Panda ccaaggtggaggagtggagcagcctgggc D Little brown bat ccaaggtggaggagtggagcagcctgggc B D Megabat ccaaggtggaggagtggagcagcctgggc B D Hedgehog ccaaggtggaggagtggagcagcctaggc B D Shrew ctaaggtggaggagtggagcagcttgggc B D Elephant ccaaggtggaggagtggagcagcctaggc B D Rock hyrax ccaaggtggaagactggagcagcctgggc B D Tenrec ccaaggtggaggagtggagcagcttgggc B D Manatee ccaaggtggaggagtggagcagcctgggc B D Armadillo ccaaggtggaggagtggggcagcctgggc B D Sloth ccaaggtggaggagtggagcagcctaggc B D Opossum caaaggtagaagagtggagcagtttgggc B D Tasmanian devil caaaggtggaagactggagcagtttgggc B D Wallaby caaaggtggaagagtggagcagtttgggc B D Platypus ccaaggtggaagaatggagcagcctgggc B D Turkey caaaggtggaggagtggagcagcctgggc B D Chicken ccaaggtggaggagtggagcagcctgggc B D Zebra finch ccaaaatggaagagtggcccagcgggaac B D Budgerigar ccaaggtggaggaatggagcagcctgggc B D Lizard ccaaactggaagactggcccagtgcgaac B D Painted turtle ccaaagtggaagaatggagcagcttgagc B D X. tropicalis ccaagctggaggagtggagcagcctgagc B D Coelacanth ctaaaatagaagaatggcctaatttaaac B D Tetraodon caaaaatggaggactggac---------- B D Fugu caaaaatggaggactggaccagcgt---- B D Medaka caaagatggaggagtggagcagcgt---- B D Zebrafish ccaaaatggaggactggacgggcgt---- B D Guinea pig NNNNNNNNNNNNNNNNNNNNNNNNNNNNN B D Horse ============================= B D Tarsier NNNNNNNNNNNNNNNNNNNNNNNNNNNNN B D Alpaca NNNNNNNNNNNNNNNNNNNNNNNNNNNNN B D Sheep NNNNNNNNNNNNNNNNNNNNNNNNNNNNN B D Stickleback ============================= B D Atlantic cod ============================= B D Nile tilapia ============================= B D Kangaroo rat NNNNNNNNNNNNNNNNNNNNNNNNNNNNN Alignment block 20 of 736 in window, 56700071 - 56700073, 3 bps B D Mouse cgc B D Rat cgc B D Naked mole-rat cgc B D Squirrel cgc B D Rabbit cgc B D Pika cgc B D Human cgc B D Chimp cgc B D Gorilla cgc B D Orangutan cgc B D Gibbon cgt B D Rhesus cgc B D Baboon cgc B D Marmoset cgc B D Squirrel monkey cga B D Mouse lemur cgc B D Bushbaby cgc B D Tree shrew cgc B D Pig cgc B D Dolphin cgc B D Sheep cgc B D Cow cgc B D Cat cgt B D Dog cgg B D Panda cgg D Little brown bat cgc B D Megabat cgc B D Hedgehog cgc B D Shrew cgc B D Elephant cgc B D Rock hyrax cgt B D Tenrec cgc B D Manatee cgc B D Armadillo cgc B D Sloth cgc B D Opossum cgc B D Tasmanian devil cgc B D Wallaby cgc B D Platypus cgc B D Turkey cgg B D Chicken cgg B D Zebra finch aga B D Budgerigar cga B D Lizard aga B D Painted turtle aga B D X. tropicalis aga B D Coelacanth aga B D Tetraodon c-- B D Fugu c-- B D Medaka c-- B D Zebrafish c-- B D Guinea pig NNN B D Horse === B D Tarsier NNN B D Alpaca NNN B D Stickleback === B D Atlantic cod === B D Nile tilapia === B D Kangaroo rat NNN Alignment block 21 of 736 in window, 56700074 - 56700132, 59 bps B D Mouse -----aacaacttccctgccgccgcc-ccgcacgcagtg-aatggattggagaagggag-ccttgga B D Rat -----aacaacttctctgctgcagcc-ccgcacgcagtg-aatggattggagaagggag-ccttgga B D Naked mole-rat -----agcaacttcccagccgcagcc-ccgcacgcggtg-aacgggctggagaagggag-ccttgga B D Squirrel -----aacaacttccctgctgccgct-ccgcacgcggtg-aacgggctggagaagggag-ccttgga B D Rabbit -----aacaacttccctgccgccgcc-ccgcacgcggtg-aacgggctggacaagggag-ccttgga B D Pika -----aacaacttccctgcggctgct-ccgcacgcggtg-aacggactggacaagggcg-ccttgga B D Human -----aacaacttccccgccgccgcc-ccgcacgcggtg-aacgggttggagaagggag-ccctgga B D Chimp -----aacaacttccccgccgccgcc-ccgcacgncgtg-aacgggttggagaaaggagtccctgga B D Gorilla -----aacaacttccccgccgccgcc-ccgcacgcggtg-aacgggttggagaagggag-ccctgga B D Orangutan -----aacaacttccccgccgccgcc-ccgcacgcggtg-aacgggttggagaagggag-ccctgga B D Gibbon -----aacaacttccccgccgccgct-ccgcacgcggtg-aacgggctggagaagggag-ccctgga B D Rhesus -----aacaacttccccgccaccgcc-ccgcacgcggtg-aacgggttggaaaagggag-tcctgga B D Baboon -----aacaacttccccgccaccgcc-ccgcacacggtg-aacgggttggaaaagggag-tcctgga B D Marmoset -----aacaacttccccgccgccgcc-ccgcacgcggtg-aacgggctggagaagggag-ccctgga B D Squirrel monkey -----agcaacttccccgccgccgcc-ccgcacgcggtg-aacgggctggagaagggag-ccctgga B D Mouse lemur -----aacaacttccccgccgctgcc-ccgcacgcagtg-aacgggctggagaagggag-ccttgga B D Bushbaby -----aacaacttccctgccgctgcc-ccgcacgccgtg-aacgggctggagaagggag-ccttgga B D Tree shrew -----aacaactttcctgccaccgcc-ccgcatgcggtg-aacgggctggagaagggaa-ccttgga B D Pig -----agcaacttcccggccgccgcc-ccgcacgcggtg-aacgggctggagaaggggg-ccttgga B D Dolphin -----agcaacttccccgccgccgcc-ccgcacgcggtg-aacgggctggagaaggggg-ccttgga B D Sheep -----agcaactt-cccgccgccg-c-ccgcacgcggtc-aacgggctggagaaggggg-ccttgga B D Cow -----agcaacttccccgccgccgcc-ccgcacgcggtc-aacgggctggagaaggggg-ccttgga B D Cat -----aacaacttcgccgccgccgcc-ccccacgcggtg-aacgggctggagaagggag-ctctgga B D Dog -----aacaacttcccggcggccgcc-ccgcacgcggtg-aacgggctggagaagggcg-ccctgga B D Panda -----aacaacttccctgccgccgcc-ccgcacgcggtg-aacgggctggagaagggag-ccctgga D Little brown bat -----agcaacttccccgccgccgcc-ccgcacgcggtc-aacgggctggagaagggag-ccctgga B D Megabat -----aacaacttcccagcctccgcc-ccgcacgcggtg-aacgggctggacaagggag-ccttgga B D Hedgehog -----aacaacttctctgccactattaacgcaggctgtg-aacgggcgggagaagggag-ccttgga B D Shrew -----aataactttcccgcggccacc-ccgcacgcggtgaaacggcctggagaagggca-ccttgga B D Elephant -----agcaacttccctgccgccgcg-ccgcacgcggtg-aacgggctggagaagggag-ccttgga B D Rock hyrax -----aacaacttccctgccggcggg-ccgcacgcagtc-aacgggctggagaagggag-ccctgga B D Tenrec -----agcaacttccccgccgccgcg-cctcacgcggtc-aacgggctggacaagggcg-ccctgga B D Manatee -----aacaacttcccagccgccgcg-cctcacgcagtg-aatgggctggagaagggag-ccttgga B D Armadillo -----aacaatttccctgccgccgcc-ccgcacgcagtg-aacgggctggagaagggcg-cgttgga B D Sloth -----aacaatttccctcccgccgcc-ccgcacgcggtg-aacgggctggagaagggag-cgttgga B D Opossum -----aacaacttttccacccctgcc-ccgcacccggtc-aatgggctggagaaagggt-ctttgga B D Tasmanian devil -----aacaccttccctacccctacc-ccacacccagtc-aacggtctggagaaaggtt-ctttgga B D Wallaby -----aacaacttccccacccctgcc-ccgcacccggtc-aacgggctggagaaaggct-ctttgga B D Platypus -----gccaacttccccgccgccgct-tcgcacgcggtc-aacgggttggagaaaggct-ccttgga B D Turkey -----agcagcttcccccctgcagcc-cagcacgccgtg-aacgggctggagaagagct-ccctgga B D Chicken -----agcagcttccccgctgcagcc-cagcatgccgtg-aacgggctggagaagagct-ccctgga B D Zebra finch -----agcggctttcccgggccgggc-cag---gcggtc-aacgggctggacaaggctg-ccatgga B D Budgerigar -----aacagctttccccccaccgct-cagcactccgtg-aacgggctggagaaaagct-ccctgga B D Lizard -----accgccttccccgccgccggg-caa---gcggtc-agcgctctggataaagcga-ccgcaga B D Painted turtle -----aacagcttccccccttcagcc-cagcatgctgtg-aatggactcgagaagagct-ccctgga B D X. tropicalis -----aaca-cgtttcagtcg--gcc-cagcatgtcctc-aatggcttagagaagagct-cactgga B D Coelacanth -----agtaacttccaaccttcaaca-cagactgttgtc-aatggaattgataaagcaa-ctctgga B D Tetraodon aacagagcagctttcc-----ctgca-gctcacgcagtc-aacgggatcgacaaatcag-ccatcga B D Fugu aacagagcagctttcc-----cggca-gctcacgcagtc-aacgggatcgacaagtcag-ccatcga B D Medaka aacagagcagcttttt-----ctgcg-ccccacacggtc-aacgggatcgacaagtcag-caattga B D Zebrafish aacagaccttcgtttc-----cttcc-gttcacggagtc-aacggcatcgataagcccc-ctttaga B D Guinea pig NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN B D Horse =================================================================== B D Tarsier NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN B D Alpaca NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN B D Stickleback =================================================================== B D Atlantic cod =================================================================== B D Nile tilapia =================================================================== B D Kangaroo rat NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN Inserts between block 21 and 22 in window B D Tetraodon 1bp B D Fugu 1bp B D Medaka 1bp B D Zebrafish 1bp Alignment block 22 of 736 in window, 56700133 - 56700152, 20 bps B D Mouse gcaggaagccaagtacggcc B D Rat gcaagaagccaagtacggcc B D Naked mole-rat gcaagaagccaagtacggtc B D Squirrel gcaggaagtcaagtacggcc B D Rabbit gcaggaagccaagtacgggc B D Pika acaggaggccaagtacgggc B D Human gcaggaagccaagtacggtc B D Chimp gca-gaagcc-agtacggtc B D Gorilla gcaggaagccaagtacggtc B D Orangutan gcaggaagccaagtacggtc B D Gibbon gcaggaagccaagtacggtc B D Rhesus gcaggaagccaagtacggtc B D Baboon gcaggaagccaagtacggtc B D Marmoset gcaggaaaccaagtacagtc B D Squirrel monkey gcaggaaaccaagtacggtc B D Mouse lemur gcaggaagccaagtacggtc B D Bushbaby gcaggaagccaagtacggtc B D Tree shrew gcaggaagccaagtacggtc B D Pig gcaagaagccaagtacgctc B D Dolphin gcaggaagccaagtacgctc B D Sheep gcaggaagccaagtacgcgc B D Cow gcaggaagccaagtacgcgc B D Cat gcaggaagccaagtacggtc B D Dog gcaggtagccaagtacgctc B D Panda gcaggaagccaagtacgcgc D Little brown bat gcaggacgccaagtacggcc B D Megabat gcaagaagccaagtacgggc B D Hedgehog acaagaagccaagtacggtc B D Shrew gcaggaagccaagtacggtc B D Elephant gcaggaagccaagtacggtc B D Rock hyrax gcaggaagccaagttcggtc B D Tenrec gcaggaagccaagtacggtc B D Manatee gcaggaagccaagttcagtc B D Armadillo gcaggaggccaagtacggcc B D Sloth gcaggaagccaagtacggtc B D Opossum gcaggaggtcaaatatggac B D Tasmanian devil gcaggaggccaaatatggac B D Wallaby acaggaggccaaatatggac B D Platypus gcaggaggccaagttcagtc B D Turkey acaggatgccaagtacagcc B D Chicken acaggaggccaagtacagcc B D Zebra finch cggcgacatcaaataccccc B D Budgerigar gcaggaggccaagtacagcc B D Lizard tacagagatgaaatacccgc B D Painted turtle gcaggaggccaagtacagcc B D X. tropicalis acaggaggtcaagtacagcc B D Coelacanth aatggatgctaaatacagtc B D Tetraodon -gccgaaattaaatatgctc B D Fugu -gccgacattaaatatgctc B D Stickleback -gcaggaac----------- B D Medaka -gccgacataaaatacgcac B D Zebrafish -agtgacattaagtacaccc B D Guinea pig NNNNNNNNNNNNNNNNNNNN B D Horse ==================== B D Tarsier NNNNNNNNNNNNNNNNNNNN B D Alpaca NNNNNNNNNNNNNNNNNNNN B D Atlantic cod ==================== B D Nile tilapia ==================== B D Kangaroo rat NNNNNNNNNNNNNNNNNNNN Alignment block 23 of 736 in window, 56700153 - 56700158, 6 bps B D Mouse aggtga B D Rat aggtga B D Naked mole-rat aggtga B D Squirrel aggtga B D Rabbit aggtga B D Pika aggtga B D Human aggtga B D Gorilla aggtga B D Orangutan aggtga B D Gibbon aggtga B D Rhesus aggtga B D Baboon aggtga B D Marmoset aggtga B D Squirrel monkey aggtga B D Mouse lemur aggtga B D Bushbaby aggtga B D Tree shrew aggtga B D Pig aggtga B D Dolphin aggtga B D Sheep aggtga B D Cow aggtga B D Cat aggtga B D Dog aggtga B D Panda aggtga D Little brown bat aggtga B D Megabat aggtga B D Hedgehog aggtga B D Shrew aggtga B D Elephant aggtga B D Rock hyrax aggtga B D Tenrec aggtga B D Manatee aggtga B D Armadillo aggtga B D Sloth aggtga B D Opossum aggtaa B D Tasmanian devil aggtaa B D Wallaby aggtaa B D Platypus aggtaa B D Turkey aggtaa B D Chicken aggtaa B D Zebra finch aggt-- B D Budgerigar aggtaa B D Lizard aggtaa B D Painted turtle aggtaa B D X. tropicalis aggtaa B D Coelacanth aggtaa B D Tetraodon aggtat B D Fugu aggtaa B D Stickleback -ggtaa B D Medaka aggtaa B D Zebrafish aggtga B D Guinea pig NNNNNN B D Horse ====== B D Chimp NNNNNN B D Tarsier NNNNNN B D Alpaca NNNNNN B D Atlantic cod ====== B D Nile tilapia ====== B D Kangaroo rat NNNNNN Alignment block 24 of 736 in window, 56700159 - 56700159, 1 bps B D Mouse g B D Rat g B D Naked mole-rat g B D Squirrel g B D Rabbit g B D Pika g B D Human g B D Gorilla g B D Orangutan g B D Gibbon g B D Rhesus g B D Baboon g B D Marmoset g B D Squirrel monkey g B D Mouse lemur g B D Bushbaby g B D Tree shrew g B D Pig g B D Dolphin g B D Sheep g B D Cow g B D Cat g B D Dog g B D Panda g D Little brown bat g B D Megabat g B D Hedgehog g B D Shrew g B D Elephant g B D Rock hyrax g B D Tenrec g B D Manatee g B D Armadillo g B D Sloth g B D Opossum g B D Tasmanian devil g B D Wallaby g B D Platypus g B D Turkey a B D Chicken a B D Budgerigar a B D Lizard a B D Painted turtle a B D X. tropicalis g B D Coelacanth a B D Tetraodon g B D Fugu a B D Stickleback a B D Medaka t B D Guinea pig N B D Horse = B D Chimp N B D Tarsier N B D Alpaca N B D Atlantic cod = B D Nile tilapia = B D Zebra finch - B D Kangaroo rat N Inserts between block 24 and 25 in window B D X. tropicalis 20330bp Alignment block 25 of 736 in window, 56700160 - 56700162, 3 bps B D Mouse gag B D Rat gag B D Naked mole-rat ga- B D Squirrel gag B D Rabbit gcg B D Pika gag B D Human gag B D Gorilla gag B D Orangutan gag B D Gibbon gag B D Rhesus gag B D Baboon gag B D Marmoset gag B D Squirrel monkey gag B D Mouse lemur gag B D Bushbaby gag B D Tree shrew gag B D Pig cag B D Dolphin gac B D Sheep gag B D Cow gag B D Cat aag B D Dog gag B D Panda gag D Little brown bat ca- B D Megabat gaa B D Hedgehog gag B D Shrew gag B D Elephant gag B D Rock hyrax gag B D Tenrec gag B D Manatee gag B D Armadillo gag B D Sloth gag B D Opossum gaa B D Tasmanian devil gaa B D Wallaby gaa B D Platypus ggg B D Turkey ggg B D Chicken ggt B D Budgerigar gag B D Lizard acc B D Painted turtle gag B D Coelacanth cag B D Tetraodon ata B D Fugu aag B D Stickleback acg B D Medaka taa B D Guinea pig NNN B D Horse === B D Chimp NNN B D Tarsier NNN B D Alpaca NNN B D Atlantic cod === B D Nile tilapia === B D X. tropicalis === B D Zebra finch --- B D Kangaroo rat NNN Inserts between block 25 and 26 in window B D Coelacanth 12531bp Alignment block 26 of 736 in window, 56700163 - 56700165, 3 bps B D Mouse --gag B D Rat --gag B D Naked mole-rat --gcg B D Squirrel --gcg B D Rabbit --gcg B D Pika --gcg B D Human --gcg B D Gorilla --gcg B D Orangutan --gcc B D Gibbon --gcg B D Rhesus --gcg B D Baboon --gcg B D Marmoset --gcg B D Squirrel monkey --gcg B D Mouse lemur --gcg B D Bushbaby --gcg B D Tree shrew --gcg B D Pig --gcg B D Dolphin --gcg B D Sheep --gcg B D Cow --gcg B D Cat --gcg B D Dog --gc- B D Panda --gcg B D Megabat --gcg B D Hedgehog --gcg B D Shrew --cc- B D Elephant --gcg B D Rock hyrax --gcg B D Tenrec --gtg B D Manatee --gcg B D Armadillo --gcg B D Sloth --gca B D Opossum --aga B D Tasmanian devil --aga B D Wallaby --agg B D Platypus --gag B D Turkey --ag- B D Chicken --ag- B D Zebra finch ---g- B D Budgerigar --ag- B D Lizard --ag- B D Painted turtle --ag- B D Tetraodon gga-- B D Fugu agg-- B D Stickleback aag-- B D Medaka gaa-- B D Guinea pig NNNNN B D Horse ===== B D Chimp NNNNN B D Tarsier NNNNN B D Alpaca NNNNN B D Atlantic cod ===== B D Nile tilapia ===== B D X. tropicalis ===== B D Coelacanth ===== D Little brown bat ----- B D Kangaroo rat NNNNN Inserts between block 26 and 27 in window B D Hedgehog 1bp B D Opossum 10bp B D Tasmanian devil 1bp B D Wallaby 1389bp B D Painted turtle 2bp B D Tetraodon 1bp B D Stickleback 6bp Alignment block 27 of 736 in window, 56700166 - 56700166, 1 bps B D Mouse a B D Rat a B D Naked mole-rat a B D Squirrel a B D Rabbit a B D Pika a B D Human a B D Gorilla a B D Orangutan a B D Gibbon a B D Rhesus a B D Baboon a B D Marmoset a B D Squirrel monkey a B D Mouse lemur a B D Bushbaby g B D Tree shrew a B D Pig a B D Dolphin a B D Sheep g B D Cow g B D Cat a B D Dog a B D Panda a B D Megabat a B D Hedgehog t B D Shrew c B D Elephant a B D Rock hyrax a B D Tenrec c B D Manatee a B D Armadillo c B D Sloth a B D Opossum a B D Tasmanian devil a B D Platypus g B D Turkey a B D Chicken a B D Zebra finch a B D Budgerigar a B D Lizard a B D Painted turtle a B D Medaka a B D Guinea pig N B D Horse = B D Chimp N B D Tarsier N B D Wallaby = B D Alpaca N B D Stickleback = B D Tetraodon = B D Fugu = B D Atlantic cod = B D Nile tilapia = B D X. tropicalis = B D Coelacanth = D Little brown bat - B D Kangaroo rat N Alignment block 28 of 736 in window, 56700167 - 56700169, 3 bps B D Mouse ---ggg B D Rat ---ggg B D Naked mole-rat ---ggg B D Squirrel ---ggg B D Rabbit ---ggg B D Pika ---gca B D Human ---ggg B D Gorilla ---ggg B D Orangutan ---ggg B D Gibbon ---agg B D Rhesus ---ggg B D Baboon ---ggg B D Marmoset ---ggt B D Squirrel monkey ---ggg B D Mouse lemur ---ggg B D Bushbaby ---cga B D Tree shrew ---ggg B D Pig ---ggg B D Dolphin ---ggg B D Sheep ---ggg B D Cow ---ggg B D Cat ---ggc B D Dog ---ggg B D Panda ---gcg D Little brown bat -----g B D Megabat ---ggg B D Hedgehog ---aag B D Shrew ---aag B D Elephant ---ggg B D Rock hyrax ---ggg B D Tenrec ---ggc B D Manatee ---ggg B D Armadillo ---ggg B D Sloth ---ggg B D Opossum ---gg- B D Tasmanian devil ---gg- B D Platypus ---ggg B D Turkey ---ggg B D Chicken ---cgg B D Zebra finch ---ggg B D Budgerigar ---ggg B D Lizard ---tgc B D Painted turtle ---gcg B D Stickleback tat--- B D Guinea pig NNNNNN B D Horse ====== B D Chimp NNNNNN B D Tarsier NNNNNN B D Wallaby ====== B D Alpaca NNNNNN B D Tetraodon ====== B D Fugu ====== B D Atlantic cod ====== B D Nile tilapia ====== B D X. tropicalis ====== B D Coelacanth ====== B D Kangaroo rat NNNNNN Inserts between block 28 and 29 in window B D Pig 1bp B D Dolphin 1bp B D Sheep 1bp B D Cow 1bp B D Cat 1bp B D Dog 1bp B D Panda 1bp D Little brown bat 412bp B D Megabat 1bp B D Shrew 1bp B D Opossum 2bp B D Tasmanian devil 2bp Alignment block 29 of 736 in window, 56700170 - 56700174, 5 bps B D Mouse ctt---g-g---- B D Rat ctt---a-g---- B D Naked mole-rat ctt---g-g---- B D Squirrel cct---g-g---- B D Rabbit ccg---g-g---- B D Pika cca---g-g---- B D Human tca---g-g---- B D Gorilla tcc---g-g---- B D Orangutan tcc---g-g---- B D Gibbon tcc---g-g---- B D Rhesus tca---g-g---- B D Baboon tca---g-g---- B D Marmoset ccc---g-g---- B D Squirrel monkey ccc---g-g---- B D Mouse lemur gca---g-g---- B D Bushbaby gcgcccg-g---- B D Tree shrew ccc---a-g---- B D Pig ccc---g------ B D Dolphin ccc---g------ B D Sheep ccc---g------ B D Cow ccc---g------ B D Cat ccc---g------ B D Dog ccc---g------ B D Panda ccc---g------ B D Megabat ccc---g------ B D Shrew gtc---gg----- B D Elephant -tc---g-g---- B D Rock hyrax -ac---------- B D Tenrec -tc---g-g---- B D Manatee -tc---g-g---- B D Armadillo -cc-----g---- B D Sloth -cc---g-g---- B D Opossum cac---------- B D Tasmanian devil tcc---------- B D Platypus -cg---g------ B D Turkey ccg---g------ B D Chicken ccg---g------ B D Zebra finch ctg---g------ B D Budgerigar gca---g------ B D Lizard tcc---g------ B D Painted turtle ctt---g------ B D Stickleback --------actac B D Guinea pig NNNNNNNNNNNNN B D Horse ============= B D Chimp NNNNNNNNNNNNN B D Tarsier NNNNNNNNNNNNN B D Wallaby ============= B D Alpaca NNNNNNNNNNNNN B D Tetraodon ============= B D Fugu ============= B D Atlantic cod ============= B D Nile tilapia ============= B D X. tropicalis ============= B D Coelacanth ============= D Little brown bat ============= B D Hedgehog ------------- B D Kangaroo rat NNNNNNNNNNNNN Inserts between block 29 and 30 in window B D Cat 9bp B D Dog 9bp B D Panda 9bp B D Megabat 8bp B D Shrew 495bp B D Elephant 1bp B D Tenrec 1bp B D Manatee 1bp B D Armadillo 1bp B D Sloth 1bp B D Zebra finch 8bp B D Budgerigar 8bp Alignment block 30 of 736 in window, 56700175 - 56700184, 10 bps B D Mouse c-caggc-ag--ct B D Rat c-tcggcggg--ct B D Naked mole-rat c-caggtggg--cc B D Squirrel c-caggtggg--cc B D Rabbit g-caggtggg--cc B D Pika gccagggggg--cc B D Human c-caggtggg--cc B D Gorilla c-caggtggg--cc B D Orangutan c-caggtggg--cc B D Gibbon c-caggtggg--cc B D Rhesus t-caggtggg--tc B D Baboon t-caggtggg--tc B D Marmoset c-caggtgga--cc B D Squirrel monkey c-caggtgga--cc B D Mouse lemur c-caggtggg--cc B D Bushbaby c-catttggg--cc B D Tree shrew c-caggtggg--cc B D Pig ------------cc B D Dolphin ------------cc B D Sheep ------------cc B D Cow ------------cc B D Cat ------------cc B D Dog ------------cc B D Panda ------------cc B D Megabat ------------cc B D Hedgehog ------------ac B D Opossum ---cctggga--gc B D Tasmanian devil ---aaaggca--tc B D Platypus ------cggt--cc B D Turkey -------------c B D Chicken -------------c B D Lizard -------------t B D Painted turtle -------------c B D Tetraodon --caagaatgtccc B D Stickleback --caaggctg--ct B D Guinea pig NNNNNNNNNNNNNN B D Elephant ============== B D Manatee ============== B D Horse ============== B D Chimp NNNNNNNNNNNNNN B D Tarsier NNNNNNNNNNNNNN B D Tenrec ============== B D Wallaby ============== B D Alpaca NNNNNNNNNNNNNN B D Fugu ============== B D Atlantic cod ============== B D Nile tilapia ============== B D X. tropicalis ============== B D Coelacanth ============== B D Budgerigar ============== B D Zebra finch ============== B D Shrew ============== D Little brown bat ============== B D Sloth ============== B D Armadillo ============== B D Kangaroo rat NNNNNNNNNNNNNN B D Rock hyrax -------------- Inserts between block 30 and 31 in window B D Opossum 1218bp B D Platypus 2bp B D Turkey 9bp B D Chicken 9bp B D Lizard 14bp B D Painted turtle 15bp Alignment block 31 of 736 in window, 56700185 - 56700199, 15 bps B D Mouse --------------gc-c-t-------------------------------------------ggtgtg- B D Rat --------------gc-c-t-------------------------------------------gctgtt- B D Naked mole-rat --------------ga-c-g-------------------------------------------gcggca- B D Squirrel --------------gc-g-c-------------------------------------------gccg-a- B D Rabbit --------------gc-g-t-------------------------------------------ggcggc- B D Pika --------------aa-gag-------------------------------------------ggccgc- B D Human --------------gc-g-t-------------------------------------------ggcggc- B D Gorilla --------------gc-g-t-------------------------------------------ggcggc- B D Orangutan --------------gc-g-t-------------------------------------------gttggc- B D Gibbon --------------gc-g-t-------------------------------------------ggcggc- B D Rhesus --------------gc-t-t-------------------------------------------ggcggc- B D Baboon --------------gc-t-t-------------------------------------------ggcggc- B D Marmoset --------------gc-g-t-------------------------------------------ggcgcc- B D Squirrel monkey --------------gc-g-t-------------------------------------------ggcgcc- B D Mouse lemur --------------gc-g-t-------------------------------------------ggcggc- B D Bushbaby --------------gc-g-t-------------------------------------------ggcggc- B D Tree shrew --------------gc-g-t-------------------------------------------ggcgac- B D Pig --------------gg-g-tg------------------------------------------ggccgc- B D Dolphin --------------gg-g-tg------------------------------------------ggccgc- B D Sheep --------------gg-g-tg------------------------------------------ggccgc- B D Cow --------------gg-g-tg------------------------------------------ggccgc- B D Cat --------------gcgg-t-------------------------------------------ggccg-- B D Dog --------------gc-g-t-------------------------------------------ggcgg-- B D Panda --------------gc-g-a-------------------------------------------ggtggc- B D Megabat --------------gc-g-t-------------------------------------------ggcggc- B D Hedgehog --------------at-g-t-------------------------------------------ggctgct B D Elephant --------------------ccgcgtgg-----------------------------------ggccgc- B D Rock hyrax -----------------------------------------------------------------ccgc- B D Tenrec --------------------cc----gg-----------------------------------ggccgc- B D Manatee --------------------ccgggtgg-----------------------------------ggccgc- B D Armadillo --------------------cggggtgggtgagcgctgg---cccccggggcttc--------gggcgc- B D Sloth --------------------ccgggtgggaaggcgcgcggtccctccatggcctg--------ggacgc- B D Tasmanian devil ---------------------------------------------------------------------- B D Platypus --------------------------------------------------gcctg--------gacccc- B D Turkey -----------------------------------------------------gg--------gtgcgt- B D Chicken -----------------------------------------------------gg--------gtgcgt- B D Zebra finch -----------------------------------------------------gg--------ggacatc B D Budgerigar -----------------------------------------------------gg--------gtgcat- B D Lizard -----------------------------------------------------ga--------gatcgg- B D Painted turtle -----------------------------------------------------gggctgcactgtgggg- B D Tetraodon gtttacttttaaatg------------------------------------------------------- B D Stickleback gcctgctgt---gtg------------------------------------------------------- B D Guinea pig NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN B D Horse ====================================================================== B D Chimp NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN B D Tarsier NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN B D Wallaby ====================================================================== B D Alpaca NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN B D Fugu ====================================================================== B D Atlantic cod ====================================================================== B D Nile tilapia ====================================================================== B D X. tropicalis ====================================================================== B D Coelacanth ====================================================================== B D Opossum ====================================================================== B D Shrew ====================================================================== D Little brown bat ====================================================================== B D Kangaroo rat NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN Mouse ----ggggg Rat ----gggga Naked mole-rat ----gggct Squirrel ----ggggt Rabbit ----tgggt Pika ----ggggt Human ----gggga Gorilla ----gggga Orangutan ----gggga Gibbon ----gggga Rhesus ----aggga Baboon ----aggga Marmoset ----gggga Squirrel monkey ----gggga Mouse lemur ----ggggg Bushbaby ----ggggg Tree shrew ----ggggg Pig ----ggggg Dolphin ----ggggg Sheep ----gg-gg Cow ----ggcgg Cat --------- Dog --------- Panda ----ggcgg Megabat ----ggggt Hedgehog gaatggggg Elephant ----ggcgg Rock hyrax ----a---- Tenrec ----tgcg- Manatee ----ggcgg Armadillo ----ggc-- Sloth ----ggcgg Tasmanian devil -cctggagt Platypus ----gacg- Turkey ----gggg- Chicken ----gggg- Zebra finch a---aata- Budgerigar ----aggg- Lizard ----ggag- Painted turtle ----ggag- Tetraodon --------- Stickleback --------- Guinea pig NNNNNNNNN Horse ========= Chimp NNNNNNNNN Tarsier NNNNNNNNN Wallaby ========= Alpaca NNNNNNNNN Fugu ========= Atlantic cod ========= Nile tilapia ========= X. tropicalis ========= Coelacanth ========= Opossum ========= Shrew ========= Little brown bat ========= Kangaroo rat NNNNNNNNN Inserts between block 31 and 32 in window B D Pig 3bp B D Dolphin 3bp B D Sheep 3bp B D Cow 3bp B D Dog 8bp B D Panda 238bp B D Megabat 2bp B D Hedgehog 6bp B D Elephant 17bp B D Rock hyrax 2bp B D Tenrec 2bp B D Manatee 17bp B D Armadillo 6bp B D Sloth 26bp B D Tasmanian devil 6bp B D Platypus 1bp Alignment block 32 of 736 in window, 56700200 - 56700200, 1 bps B D Mouse t B D Rat t B D Naked mole-rat t B D Squirrel t B D Rabbit t B D Pika t B D Human t B D Gorilla t B D Orangutan t B D Gibbon t B D Rhesus t B D Baboon t B D Marmoset t B D Squirrel monkey t B D Mouse lemur t B D Bushbaby t B D Tree shrew t B D Elephant c B D Rock hyrax c B D Tenrec c B D Manatee g B D Sloth t B D Tasmanian devil t B D Turkey c B D Chicken c B D Zebra finch c B D Budgerigar c B D Lizard t B D Painted turtle c B D Tetraodon t B D Stickleback t B D Guinea pig N B D Cow = B D Pig = B D Horse = B D Panda = B D Dog = B D Chimp N B D Tarsier N B D Wallaby = B D Alpaca N B D Sheep = B D Fugu = B D Atlantic cod = B D Nile tilapia = B D X. tropicalis = B D Platypus = B D Coelacanth = B D Opossum = B D Shrew = D Little brown bat = B D Armadillo = B D Cat - B D Hedgehog = B D Kangaroo rat N B D Megabat = B D Dolphin = Inserts between block 32 and 33 in window B D Stickleback 3bp Alignment block 33 of 736 in window, 56700201 - 56700201, 1 bps B D Mouse t B D Rat t B D Naked mole-rat t B D Squirrel t B D Rabbit t B D Pika t B D Human t B D Gorilla t B D Orangutan t B D Gibbon t B D Rhesus t B D Baboon t B D Marmoset t B D Squirrel monkey t B D Mouse lemur t B D Bushbaby t B D Tree shrew t B D Cat c B D Elephant t B D Rock hyrax c B D Tenrec t B D Manatee t B D Sloth t B D Tasmanian devil t B D Turkey c B D Chicken c B D Zebra finch c B D Budgerigar c B D Lizard c B D Painted turtle t B D Stickleback t B D Guinea pig N B D Cow = B D Pig = B D Horse = B D Panda = B D Dog = B D Chimp N B D Tarsier N B D Wallaby = B D Alpaca N B D Sheep = B D Fugu = B D Atlantic cod = B D Nile tilapia = B D X. tropicalis = B D Platypus = B D Coelacanth = B D Opossum = B D Shrew = D Little brown bat = B D Armadillo = B D Hedgehog = B D Kangaroo rat N B D Megabat = B D Dolphin = Inserts between block 33 and 34 in window B D Human 1bp B D Gorilla 1bp B D Orangutan 1bp B D Gibbon 1bp B D Rhesus 1bp B D Baboon 1bp B D Marmoset 1bp B D Squirrel monkey 1bp B D Mouse lemur 1bp B D Bushbaby 1bp B D Tree shrew 14bp B D Cat 8bp B D Elephant 2bp B D Rock hyrax 2bp B D Tenrec 2bp B D Manatee 2bp B D Sloth 2bp B D Tasmanian devil 7bp B D Turkey 7bp B D Chicken 7bp B D Zebra finch 7bp B D Budgerigar 7bp B D Lizard 8bp B D Painted turtle 10282bp Alignment block 34 of 736 in window, 56700202 - 56700220, 19 bps B D Mouse g-----------gggg------------tt-ggg---------ggatg------a--agg B D Rat --------------------------------gg---------agatg------a--ggg B D Naked mole-rat c-----------aggg------------at-gga---------ggaca------g--agg B D Squirrel g-----------ggag------------gt-gga---------ggact------c--agg B D Rabbit g-----------ggcg------------gt-gga---------ggaca------c--ggg B D Pika g-----------ggcc------------at-gga---------ggaca------cctagg B D Human a-----------ggcg------------at-gga---------acactttgtgat--ggg B D Gorilla a-----------ggcg------------at-gga---------acact------c--ggg B D Orangutan a-----------ggcg------------at-gga---------acact------c--ggg B D Gibbon a-----------ggcg------------at-gga---------acact------c--ggg B D Rhesus a-----------ggcg------------at-gga---------g-act------c--ggg B D Baboon a-----------ggcg------------at-gaa---------g-act------a--ggg B D Marmoset a-----------ggcg------------ataaga---------agact------c--ggg B D Squirrel monkey a-----------ggcg------------ataaga---------agact------c--ggg B D Mouse lemur t-----------ggcg------------ag-ggc---------gtacc------c--aga B D Bushbaby g-----------ggcg------------at-gga---------ggacc------c--aga B D Pig g-----------ggcg------------ac-gca---------ggcc------------- B D Dolphin g-----------ggcg------------ac-gga---------ggcc------------- B D Sheep g-----------ggcg------------ac-gga---------gg-c------------- B D Cow g-----------ggcg------------ac-gga---------gg-c------------- B D Cat g-----------ggcg------------ac-gca---------ggac------------- B D Dog g-----------cgcg------------ac-gga---------ggac------------- B D Megabat c-----------ggtg------------at-gga---------ggac------------- B D Hedgehog cctagcccaccaggga------------ag-gaa---------gggt------------- B D Elephant g-----------ggcg------------ag-gga---------ggacc------c--agg B D Rock hyrax g-----------ggcg------------ac-cgt---------ggacc------c--agg B D Tenrec g-----------ggaggcgtgggggcgcag-cgc---------ggacc------c--ggg B D Manatee g-----------ggtg------------at-gga---------ggacc------c--agg B D Armadillo g-----------ggcg------------gt-gga---------gggcc------t--aga B D Sloth g-----------ggtg------------aa-gga---------ggact------t--aga B D Tasmanian devil g-----------gtcc------------ac-aaa---------gg--------------- B D Platypus --gggcgttgtcgggg------------at-aaa---------g---------------- B D Turkey -----ttagccctggg------------ga-tgc---------g---------------- B D Chicken -----tcggccttgag------------ac-tgc---------g---------------- B D Zebra finch -----gagggctgggg------------ac-ggaaggggacagg---------------- B D Budgerigar -----tccgcctcggg------------ct-tgt---------g---------------- B D Lizard -----ggcggaggagg------------ag-ggg---------g---------------- B D Stickleback --------gggagggg------------ag-gga---------ga--------------- B D Guinea pig NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN B D Horse ============================================================ B D Panda ============================================================ B D Chimp NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN B D Tarsier NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN B D Wallaby ============================================================ B D Alpaca NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN B D Tree shrew ============================================================ B D Fugu ============================================================ B D Atlantic cod ============================================================ B D Nile tilapia ============================================================ B D X. tropicalis ============================================================ B D Coelacanth ============================================================ B D Opossum ============================================================ B D Painted turtle ============================================================ B D Shrew ============================================================ D Little brown bat ============================================================ B D Kangaroo rat NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN Inserts between block 34 and 35 in window B D Naked mole-rat 9bp B D Squirrel 9bp B D Rabbit 9bp B D Pika 9bp B D Human 11bp B D Gorilla 11bp B D Orangutan 11bp B D Gibbon 11bp B D Rhesus 11bp B D Baboon 11bp B D Marmoset 11bp B D Squirrel monkey 11bp B D Mouse lemur 11bp B D Bushbaby 11bp B D Pig 7bp B D Dolphin 16bp B D Sheep 16bp B D Cow 16bp B D Cat 14bp B D Dog 15bp B D Megabat 16bp B D Hedgehog 11bp B D Elephant 9bp B D Rock hyrax 9bp B D Tenrec 9bp B D Manatee 9bp B D Armadillo 10bp B D Sloth 10bp B D Tasmanian devil 1048bp B D Turkey 1bp B D Chicken 1bp B D Zebra finch 1bp B D Budgerigar 1bp B D Lizard 1bp Alignment block 35 of 736 in window, 56700221 - 56700222, 2 bps B D Mouse at- B D Rat ac- B D Naked mole-rat gt- B D Squirrel ga- B D Rabbit ga- B D Elephant a-- B D Rock hyrax a-- B D Tenrec g-- B D Manatee a-- B D Armadillo a-- B D Sloth a-- B D Turkey c-- B D Chicken c-- B D Zebra finch a-- B D Budgerigar c-- B D Lizard a-- B D Stickleback -at B D Guinea pig NNN B D Bushbaby === B D Cow === B D Rhesus === B D Orangutan === B D Squirrel monkey === B D Pig === B D Horse === B D Panda === B D Dog === B D Marmoset === B D Gibbon === B D Gorilla === B D Chimp NNN B D Human === B D Tarsier NNN B D Wallaby === B D Pika === B D Alpaca NNN B D Tree shrew === B D Sheep === B D Fugu === B D Atlantic cod === B D Nile tilapia === B D X. tropicalis === B D Platypus --- B D Coelacanth === B D Tasmanian devil === B D Opossum === B D Painted turtle === B D Shrew === D Little brown bat === B D Baboon === B D Cat === B D Mouse lemur === B D Hedgehog === B D Kangaroo rat NNN B D Megabat === B D Dolphin === Alignment block 36 of 736 in window, 56700223 - 56700228, 6 bps B D Mouse gcct----cg B D Rat gcct----tg B D Naked mole-rat gcctcctccg B D Squirrel gccc----ta B D Rabbit gcct----cg B D Human gctt----cc B D Gorilla gctt----cc B D Orangutan gctt----cc B D Gibbon gctt----cc B D Rhesus gctt----cc B D Baboon gctt----cc B D Marmoset gcct----cc B D Squirrel monkey gcct----cc B D Mouse lemur gcct------ B D Bushbaby gcct------ B D Tree shrew gcct----cg B D Dolphin acct----cg B D Sheep gctt----cg B D Cow gcct----cg B D Cat gcct----cg B D Dog gcct----cg B D Megabat gcct----cg B D Elephant gcct----cg B D Rock hyrax gcct----cg B D Tenrec gcgg----tc B D Manatee ccct----cg B D Armadillo ccct----cc B D Sloth gcct----cg B D Platypus -ccc----cc B D Turkey -ccc----tt B D Chicken -ccc----tt B D Zebra finch -agc----gt B D Budgerigar -cct----cg B D Lizard -aac------ B D Stickleback ggtt----cg B D Guinea pig NNNNNNNNNN B D Pig ========== B D Horse ========== B D Panda ========== B D Chimp NNNNNNNNNN B D Tarsier NNNNNNNNNN B D Wallaby ========== B D Pika ========== B D Alpaca NNNNNNNNNN B D Fugu ========== B D Atlantic cod ========== B D Nile tilapia ========== B D X. tropicalis ========== B D Coelacanth ========== B D Tasmanian devil ========== B D Opossum ========== B D Painted turtle ========== B D Shrew ========== D Little brown bat ========== B D Hedgehog ========== B D Kangaroo rat NNNNNNNNNN Inserts between block 36 and 37 in window B D Stickleback 1606bp Alignment block 37 of 736 in window, 56700229 - 56700240, 12 bps B D Mouse aaggg-gagaagc B D Rat aagag-ggagaag B D Naked mole-rat ccgag-agaagcc B D Squirrel accaa-gaggaac B D Rabbit agcga-ggggagc B D Pika ---ga-ggcaagc B D Human cgcga-gagaagc B D Gorilla cgcga-gagaagc B D Orangutan cgcga-gagaagc B D Gibbon cgcga-gagaagc B D Rhesus cgcga-gagaagc B D Baboon cgcga-gagaagc B D Marmoset cggga-gaaaaac B D Squirrel monkey gggga--aaaagc B D Tree shrew acgga-gggaagc B D Dolphin accgaggagaggc B D Sheep accgaggggaagc B D Cow accgaggagaagc B D Cat accgagggcaagc B D Dog acc-aggggaagc B D Megabat acggaggggaagc B D Elephant accgaggggaagc B D Rock hyrax accgagggtaagc B D Tenrec gtcg------agc B D Manatee accgaggggaagc B D Armadillo aaccaggggaagg B D Sloth aacgagggaaagg B D Platypus cacga-gcagagc B D Turkey cccggggctgagc B D Chicken cccggggctgagc B D Zebra finch ggctggaatgag- B D Budgerigar cccgg------gc B D Guinea pig NNNNNNNNNNNNN B D Bushbaby ------------- B D Pig ============= B D Horse ============= B D Panda ============= B D Chimp NNNNNNNNNNNNN B D Tarsier NNNNNNNNNNNNN B D Wallaby ============= B D Alpaca NNNNNNNNNNNNN B D Stickleback ============= B D Fugu ============= B D Atlantic cod ============= B D Nile tilapia ============= B D X. tropicalis ============= B D Coelacanth ============= B D Tasmanian devil ============= B D Opossum ============= B D Lizard ============= B D Painted turtle ============= B D Shrew ============= D Little brown bat ============= B D Mouse lemur ------------- B D Hedgehog ============= B D Kangaroo rat NNNNNNNNNNNNN Alignment block 38 of 736 in window, 56700241 - 56700259, 19 bps B D Mouse tcaggct--------------------------g--gcgaccctctg----------- B