Multiz Alignments of 35 Vertebrates

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Capitalize exons based on show bases

Place cursor over species for alignment detail. Click on 'B' to link to browser for aligned species, click on 'D' to get DNA for aligned species.
Alignment block 1 of 313 in window, 56744113 - 56744209, 97 bps B D Mouse gagtcttcc-cag------------------------g-------------------------------- B D Rat gagtcgtcc-cag------------------------g-------------------------------- GCF_003668045 gagtcttcc-cag------------------------g-------------------------------- Beaver tagtcttcc-cat------------------------g-------------------------------- B D Squirrel gagacttcc-cag------------------------g-------------------------------- B D Guinea pig gagtcttcc-cag------------------------g-------------------------------- B D Rabbit gcggcttcc-cag------------------------g-------------------------------- B D Pika gaggcttcc-cag------------------------g-------------------------------- B D Human gagtcttcc-tag------------------------g-------------------------------- B D Chimp gagtcttcc-tag------------------------g-------------------------------- B D Bonobo gagtcttcc-tag------------------------g-------------------------------- B D Gorilla gagtcttcc-tag------------------------g-------------------------------- B D Rhesus gagtcttcc-tag------------------------g-------------------------------- B D Marmoset gagtcttcc-tag------------------------g-------------------------------- B D Tarsier gagtcttcc-cag------------------------g-------------------------------- B D Bushbaby gagtcttcc-cag------------------------g-------------------------------- B D Tree shrew gagtcttcc-cag------------------------g-------------------------------- B D Malayan flying lemur gagtcttcc-cag------------------------g-------------------------------- B D Pig gagtcttct-gag------------------------a-------------------------------- B D Dolphin gggccctcc-cat------------------------g-------------------------------- B D Cow gagtcctcc-cag------------------------g-------------------------------- B D Sheep gagtcctcc-cag------------------------g-------------------------------- B D Horse cagtcctcc-cag------------------------g-------------------------------- B D Chinese pangolin gagtccttc-cag------------------------g-------------------------------- B D Dog gagtcctcc-cag------------------------g-------------------------------- B D Hawaiian monk seal gagtcctcc-cag------------------------g-------------------------------- B D Hedgehog gactcctcc-ccg------------------------ggtggtggtggtggagatggtggtggtggtggt B D Shrew gagt-cttc-cag------------------------ggcggggggcgt----------------gtgtg B D Elephant gagtcctcc-cgg-----------agaggggaggggga-------------------------------- B D Tenrec gcgtccttc-tgggggggcggcgcagtgggggtggggg-------------------------------- B D Opossum gtgtcttccgcat------------------------g-------------------------------- B D Zebrafish ====================================================================== B D X. tropicalis ====================================================================== B D Chicken ====================================================================== Mouse ---gggt-gt--------------------cctgatctcatta------------------acttgaaac Rat ---gggt-gt--------------------cctgatctcatta------------------acttgaaac GCF_003668045 ---gggt-gt--------------------cctgatctcatta------------------acttgaaac Beaver ---gggt-gt--------------------cctgatctcatta------------------acttgaaac Squirrel ---gggt-gt--------------------cctgatctcatta------------------acttgaaac Guinea pig ---gggt-gt--------------------cctgatctcatta------------------acttgaaac Rabbit ---gggg-ac--------------------cctgatctcatta------------------actcgaaac Pika ---ggggtgt--------------------cctgatctcatta------------------acttgaaac Human ---gggt-gt--------------------tctgatctcatta------------------acttgaaac Chimp ---gggt-gt--------------------tctgatctcatta------------------acttgaaac Bonobo ---gggt-gt--------------------tctgatctcatta------------------acttgaaac Gorilla ---gggt-gt--------------------tctgatctcatta------------------acttgaaac Rhesus ---gggt-gt--------------------cctgatctcatta------------------acttgaaac Marmoset ---gggt-gt--------------------cctgatctcatta------------------acttgaaac Tarsier ---gggt-gt--------------------cctgatctcatta------------------actcgaaac Bushbaby ---gggt-gt--------------------cctgatctcatta------------------acttgaaac Tree shrew ---gggt-gt--------------------cctgatctcatta------------------acttgaagc Malayan flying lemur ---gggt-gt--------------------catgatctcatta------------------gcttgcaac Pig ---gggt-ga--------------------cctgatctcatta------------------atgtgaaat Dolphin ---gggt-gt--------------------cctgatctcatta------------------acgtgaaat Cow ---gggt-gt--------------------cctgatctcatta------------------acgtgaaat Sheep ---gggt-gt--------------------cctgatctcatta------------------acgtgaaat Horse ---gggt-gt--------------------cctgatctcatta------------------acttgaaat Chinese pangolin ---gagt-gt--------------------cctgatctcatta------------------acttgaaat Dog ---gggt-gt--------------------cctgatctcatta------------------acttgaaat Hawaiian monk seal ---gggt-gt--------------------tctgatctcatta------------------acttgaaat Hedgehog agtgggt-gt--------------------cctgatctcatta------------------acttgaaat Shrew tgtgggg-gt--------------------cctgatctcatta------------------acttgaaat Elephant ---aggt-gt--------------------cctgctctcatta------------------acttgaaat Tenrec ---tggt-gc--------------------cctgctctcatta------------------acttgaaat Opossum ---ggga-attactgtctcgcgattgcccacctgatcccgttatagaacaggaagatttttattgggaag Zebrafish ====================================================================== X. tropicalis ====================================================================== Chicken ====================================================================== Mouse tcttgcccctctgtttccttgc--c------------acacacag--tctccagcc--tcatctcaaact Rat tcttgcccctctgtttccttgccac------------acacacag--tttccagcc--tcatctcaaact GCF_003668045 tcttgcccctccgtttccttgccac------------acacacag--tctgcagcc--tcatctcaaact Beaver tcatgcccct-tgtttccttgc--c------------acacacag--tcttctgcc--tcatctcaaact Squirrel tcacgcccct-cgtttccttgc--c------------acacacag--tctccagcc--tcatctcaaact Guinea pig ttttgcccct-ggtttccttgc--c------------acacacagtctctcctgcc--tcatctcaaact Rabbit tcctgcccct--gcttccttgc--c------------acacacag--cctcctgcc--tcatctcaaact Pika tcctgcccct--gtttccttgc--c------------acacacag--tctcctgcc--tcatctcaaact Human tcatgcccct-ggtttccttgc--c------------acacacag--tcttctgcc--tcatctcaaact Chimp tcatgcccct-ggtttccttgc--c------------acacacag--tcttctgcc--tcatctcagact Bonobo tcatgcccct-ggtttccttgc--c------------acacacag--tcttctgcc--tcatctcaaact Gorilla tcatgcccct-ggtttccttgc--c------------acacacag--tcttctgcc--tcatctcaaact Rhesus tcatgcccct-ggtttccttgc--c------------acacacag--tctcctgcc--tcaactcaaact Marmoset gcttgcccct-ggtttccttgc--c------------acacacag--tctcctgcc--tcatctcaaact Tarsier tcatgcccct-cgtttccttgc--c------------acacacag--tctcctgcc--tcatctcaaact Bushbaby tcatgcccct-agtttcctcgc--c------------acacacag--tctcctgcc--tcatctcaaact Tree shrew tcctgcccct-cgtttccttgc--c------------acacacag--tctccagcc--tcatctcaaact Malayan flying lemur tcatgcccct-agtttccttac--c------------acacacag--tctcctgcc--tcatctcaaact Pig tcatgccctt-cgtttccttgc--c------------acacacag--tctcctgcc--tcatctcaaact Dolphin tcatgccctt-cgtttccttgc--c------------acacgcag--tctactgcc--tcatctcaaacg Cow tcatgccctt-cgtttccttgc--c------------acacacag--tctactgcc--tcatctcaaact Sheep tcatgccctt-cgtttccttgc--c------------acacacag--tctactgcc--tcatctcaaact Horse tcatgccctt-cgtttccttgc--c------------acacacag--tctcctgcc--tcatctcaaact Chinese pangolin tcgtgccctc-cgttttcttgc--c------------acacacag--tctcctgcc--tcatctcaaact Dog tcatgccctc-tgtttccttgc--c------------acacacag--tctcctgcc--tcatctcaaact Hawaiian monk seal tcatgccctc-cgtttccttac--c------------acacacag--tctcctgcc--tcatctcaaact Hedgehog tcatgccctt-ccttcccttgc--c------------acacacag--tctcctgcc--tcatctcagact Shrew tcatgccctt-cctttccttgc--c------------acacacag--tctcctgcc--tcatctcaaact Elephant tcatgcctct-cgtttccttgc--c------------acacacag--tctcctgcc--tcatctcaaact Tenrec tcatgcccct-cgtttccttgc--c------------acccacag--tctcctgcc--tcatctcaaact Opossum cagtgctccc----ttctctgc--cttctctgtttgaaatcgctg--ttttttccccttcacctcaagct Zebrafish ====================================================================== X. tropicalis ====================================================================== Chicken ====================================================================== Mouse acca Rat acca GCF_003668045 gcca Beaver acca Squirrel acca Guinea pig acca Rabbit acca Pika acca Human acca Chimp acca Bonobo acca Gorilla acca Rhesus atca Marmoset acca Tarsier acca Bushbaby acca Tree shrew acca Malayan flying lemur acca Pig acca Dolphin acca Cow acca Sheep acca Horse acca Chinese pangolin acca Dog acca Hawaiian monk seal acca Hedgehog ccca Shrew acca Elephant acca Tenrec acca Opossum act- Zebrafish ==== X. tropicalis ==== Chicken ==== Alignment block 2 of 313 in window, 56744210 - 56744222, 13 bps B D Mouse gacccataacata- B D Rat gacccataacatc- GCF_003668045 gacccataacat-- Beaver gacccataacat-- B D Squirrel gacccataacat-- B D Guinea pig gacccataacat-- B D Rabbit gacccataacat-- B D Pika gagccgtaacat-- B D Human gacccataacat-- B D Chimp gacccataacat-- B D Bonobo gacccataacat-- B D Gorilla gacccataacat-- B D Rhesus gacccataacat-- B D Marmoset gacccataacat-- B D Tarsier gacccataacat-- B D Bushbaby gacccataacat-- B D Tree shrew gacccataacat-- B D Malayan flying lemur gacccgtaacat-- B D Pig gacccataacat-- B D Cow gacccataacat-- B D Sheep ga-ccataacat-- B D Horse gacccataacat-- B D Chinese pangolin gacccataacat-- B D Dog gacccataacat-- B D Hawaiian monk seal gacccataacat-- B D Hedgehog gacccataacat-- B D Shrew gacccataacat-- B D Elephant gacccataacat-- B D Tenrec gaccctgaacat-- B D Opossum ------cagcag-a B D Zebrafish ============== B D X. tropicalis ============== B D Chicken ============== Alignment block 3 of 313 in window, 56744223 - 56744344, 122 bps B D Mouse ccccc---ccc--cccaaacacatggttcgcattttccaccctcccccgcctc-tcgcgcact------- B D Rat ccccc---cccatccccaacacatggttcgcattttccaccctcccccgcctc-tcgcgcact------- GCF_003668045 ---cc---cccatccccaacacatggttcgcattttccaccctcccccgcctc-tcgcgcact----c-- Beaver --ccc---cccatctccaacacatggttcgcattttccaccctcccccgcctc-tcgcggcgc----g-- B D Squirrel ---cc---cccgtccccaacacatggttcgcattttccaccctcccccgcccc-tcgcgctgc----g-- B D Guinea pig ---cc---cccatccccaacacatggttcgcattttccaccctgccccgcctc-tcgcgccgc----g-- B D Rabbit ---cc---cccagccccaacacatggttcgcattttccaccctcccccgcctc-tcgcgccgc----gcc B D Pika --ccc---cccagccctgacacatggttcgcattttccaccctcccccgcctc-tcgcgccgc----gc- B D Human --ccc---cccatccccaacacatggttcgcattttccaccctcccccgcctc-tcgcgccga----g-- B D Chimp --ccc---cccatccccaacacatggttcgcattttccaccctcccccgcctc-tcgcgccga----g-- B D Bonobo --ccc---cccatccccaacacatggttcgcattttccaccctcccccgcctc-tcgcgccga----g-- B D Gorilla --ccc---cccatccccaacacatggttcgcattttccaccctcccccgcctc-tcgcgccga----g-- B D Rhesus --ccc---cccatccccaacacatggttcgcattttccaccctcccccgcctc-tcgcgccaa----g-- B D Marmoset --ccc---cccatccccaacacatggttcgcattttccaccctcccccgcctc-tcgagccga----g-- B D Tarsier --ccc---gccatccccaacacatggttcgcattttccaccctcccccgcctc-tcgcgccgc----a-- B D Bushbaby --ccc---cccattcccaacacatggttcgcattttccaccctcccccgcctc-tcgcgccgc----g-- B D Tree shrew --ccccctcccatccccgacacatggttcgcattttccaccctcccccgcctc-tctctcggc----t-- B D Malayan flying lemur --ccc---cccatccccaacacatggttcgcattttccaccctcccccgcctc-tcgcgccgc----g-- B D Pig --ccc---tccatccctaacacatggttcgcattttccaccctcccccgcctc-tctcgctgc----g-- B D Dolphin --ccc---cccatccccgacacatggttcgcattttccaccctcccccgcctc-gcgcgccgc----c-- B D Cow ---cc---cccatccccaacacatggttcgcattttccaccctcccccgcctc-tcgcgccgc----g-- B D Sheep ---cc---cccatccccaacacatggttcgcattttccaccctcccccccccc-ccccccccc----c-- B D Horse --ccc---cccatccctaacacatggttcgcattttccaccctcccccgcctc-tcgcgccac----c-- B D Chinese pangolin --tcc---cccacccccaacacatggttcgcattttccaccctcccccgcctc-tcgcgccgc----a-- B D Dog --ccc---cccatccccaacacatggttcgcattttccaccctcccccgcctc-tcgcgccgc----g-- B D Hawaiian monk seal --ccc---cccatccccaacacatggttcgcattttccaccctcccccgcctc-tcgcgccgc----t-- B D Hedgehog --ccc---cccatctccaacacatggttcgcattttccaccctaccccgcctctttgcgccgc----g-- B D Shrew --ccc---cccagccccaacacatggttcgcattttccatcctcccccgcctc-tcgcgccgc----c-- B D Elephant --ccc---cccagccccaacacatggttcacattttccaccctcccccgcccc-ctgcgccgcgccag-- B D Tenrec ---cc---cccagccccgacacatggttcacattttccaccctcccccgcccc-ctgcgctgc----c-- B D Opossum ctcct---tcccaaccaaactcatgattcacatgctccttttccttttctttc-tttctcctt----t-- B D Zebrafish ====================================================================== B D X. tropicalis ====================================================================== B D Chicken ====================================================================== Mouse ----------------c-------------------agcctcag-ccg--ggctagactgt-ttggagag Rat ----------------c-------------------agcctcag-ccg--ggctagactgt-ttggagag GCF_003668045 ---------------gc-------------------ggccttag-ccg--ggctattctgc-ttggagag Beaver ---------------gt-------------------aaccgcag-ccc--ggcttgctcac-ttggagag Squirrel ---------------gc-------------------agcctcag--cg--ggctggctggc-ttggtgag Guinea pig ---------------gc-------------------agtctcag-ccg--ggcttgctcac----agcag Rabbit gcgccgcgccgcgccgc-------------------agcctcag-ccg--ggcttgctcac-tcggagag Pika -----------tgctgc-------------------ctcctccgcccg--ggctggctcac-t--gagtg Human ---------------gc-------------------agcctcag-ccc--ggcttgctcac-ttggagag Chimp ---------------gc-------------------agcctcag-ccc--ggcttgctcac-ttggagag Bonobo ---------------gc-------------------agcctcag-ccc--ggcttgctcac-ttggagag Gorilla ---------------gc-------------------agcctcag-ccc--ggcttgctcac-ttggagag Rhesus ---------------gc-------------------agcctcag-ccc--ggcttgctcac-ttggagag Marmoset ---------------gc-------------------ggcctcag-ccc--ggcttgctcac-ttgaagag Tarsier ---------------gc-------------------cgcctcaa-ccg--gcctggctcgc-tcggaga- Bushbaby ---------------gc-------------------agtctcag-gcc--ggctcgcaga--gcgcagag Tree shrew ---------------gc-------------------agcctctg-ccc--ggcttgctcactttggagag Malayan flying lemur ---------------gc-------------------agcctcag-ccc--ggcttgctcac-ttggagag Pig ---------------gt-------------------agcctcag-accggcgctctctcgc-ttggagag Dolphin ---------------gc-------------------agcctcag-acc--agctcgctcac-ttggagag Cow ---------------gc-------------------agcctcgg-acc--agcctgctcac-ttggagag Sheep ---------------cc-------------------gcccc-----cc--cgccc-ccccc-ccggagag Horse ---------------gc-------------------agcctcag-acc--ggctcactcac-ttggagag Chinese pangolin ---------------gc-------------------agcctcag-acc--ggcttgctcac-ttggagag Dog ---------------gc-------------------agccttag-acc--cgctcgctcgc-ttggagag Hawaiian monk seal ---------------gc-------------------agccttag-acc--ggctcgctcac-ttggagag Hedgehog ---------------gc-------------------ggcctcag-aca--gactcgttcgc-agggagag Shrew ---------------gc-------------------ggcctcag-act--ggctcgctcgc-ttgcagag Elephant ---------------gc-------------------agcttcag-gct--ggctggctggc-ttggagag Tenrec ---------------gc-------------------ggcctccg-tca--ggcgggctacc-tcggagcg Opossum ---------------gctttagaatttatcttctagaatttcgt-cca--aatttcgaatc-ccgtgcag Zebrafish ====================================================================== X. tropicalis ====================================================================== Chicken ====================================================================== Mouse -cg-cag-cctgg--c-gatt-tgggga-gcacaagaggagg Rat -cg-cag-cctgg--a-gatt-tgggga-gcacaagagaagg GCF_003668045 -gg-cag-cccgc--c-gact-taggga-gcagtgggggagg Beaver -cg-ccg-cccgg--ctgact-tggggc-gcagcccgggagg Squirrel -cg-ctg-cccgggcc-cact-tggggc-gcagccctggagg Guinea pig -cgattg-cccgagcc-gacc-agaggc-gctgcccgggagg Rabbit -cg-cgg-ccggggccggact-tggggc-tcagcccgggagg Pika -cg-cgg-cc---gccgggct-tggggc-gcagcccgggagg Human -tg-cgg-ccggggctggact-tggggc-gcagcccgggagg Chimp -tg-cgg-ccggggctggact-tggggc-gcagcccgggagg Bonobo -tg-cgg-ccggggctggact-tggggc-gcagcccgggagg Gorilla -tg-cgg-ccggggctggact-tggggc-gcagcccgggagg Rhesus -ca-cgg-ctggggctggact-tggggc-gcagcccgggagg Marmoset -ag-cgt-cc-gggccggact-tggggg-gcagcccgggagg Tarsier -cg-cgt-tcggggccggact-tggggt-gcagcccgggagg Bushbaby -cg-cgg-cc--ggccggact-tgggga-gcagcccaggagg Tree shrew -cg-cag-ccggggccggact-tggggc-gcagcccggaagg Malayan flying lemur -cg-cgg-ccggggccggact-tggggc-agagcccgggagg Pig -cg-aga-cc---gctggact-tggggc-gcagcccgggagg Dolphin -cg-ccg-ccggggccggact-tggggc-gcagccggagagg Cow -cg-cgg-ccggggccggact-tgggga-gcagcccgagagg Sheep -cg-ggg-ccggggccgggctctggggc-gcagcctgagagg Horse ccg-cgg-ccggggccggact-tggggc-gcagcccgggagg Chinese pangolin -cg-cgg-ccccggccggact-tgggga-gcagcccgggagg Dog -cg-cgg-cccgggtcggact-tggggc-gcagcccgggagg Hawaiian monk seal -cg-cgg-cccgggtcggact-tggggc-gcagcccgggagg Hedgehog -ca-cggcccggggccggact-tgggggcgcagcccgggagg Shrew -cg-cgg-ccaggacccgact-tgggga-gcagcccagcagg Elephant -cg-cgg-cccgggctggact-tgggac-ccagccggggagg Tenrec -cg-cgg-ccggggccggtc--gggggc-gcagcccgggagg Opossum -ca-taa-ct----ttagatt-taaata-gcaggggagaagg Zebrafish ========================================== X. tropicalis ========================================== Chicken ========================================== Inserts between block 3 and 4 in window B D Opossum 13bp Alignment block 4 of 313 in window, 56744345 - 56744391, 47 bps B D Mouse ccctagcaggct--tggggctgcgg-gttgtaggtagccactgtcggc-----ag B D Rat ccctagcaggct--tggggctgcgg-gctgtagatggccactgtccgc-----ag GCF_003668045 ccttagcgggct--tgggtctgcga-gctgcagat-gccactgccggt-----aa Beaver cccgagccggct--tggggctgccg-gctgcagat-gccgctgtccgc-----ga B D Squirrel cccgagccgact--taaggttgccg-gcggcagat-gcggctacaggc-----aa B D Guinea pig gcccagtcggct--tggggcagtcg-gcagcagat-gcctctg-gagc-----ag B D Rabbit cccgagccggcg--tggggctaccg-gctgcaaac-gccgctgcgggc-----ag B D Pika -ccgaaccggcc--tggggttgccgagct-----t-gccgggctggac-----ag B D Human cccgagcctgct--tggggctgccg-gctgcagac-tccgctgtgggcagagcag B D Chimp cccgagcctgct--tggggctgccg-gctgcagac-tccgctgtgggcagagcag B D Bonobo cccgagcctgct--tggggctgccg-gctgcagac-tccgctgtgggcagagcag B D Gorilla cccgagcctgct--tggggctgccg-gctgcagac-tccgctgtgggcaaagcag B D Rhesus cccgagcctgct--tggggctgccg-gctgcagac-gccgctgcgggcagagcag B D Marmoset cctgagcctgct--tggggctgccg-gctgcagat-gccgctgcaggcagagtag B D Tarsier cccgagcctgtt--tggggcggccg-gctgcagac-gccgctgcgggc-----gg B D Bushbaby cccgagcctgcg--tggggctgcgg-gcggcaggc-gccgctgcgggc-----ag B D Tree shrew cccgagccggct--tggggctgcgg-gttgcagag-gccgctgccggc-----ag B D Malayan flying lemur cccgagccggca--tggggctgccg-gctgcagac-gccgctgcgggc-----ag B D Pig cccgagccgtcg--tggggctgccg-gctgcagac-actgctttgggc-----ag B D Dolphin cccgagcaggcg--tggggctgccg-gctgcagac-actgctgcgggc-----ag B D Cow cccgagcgggcg--tggagctgccg-gctgcagac-acggcttcgggc-----gg B D Sheep cccgagcgggcg--tggagctgccg-gctgcagac-acggcttcgggc-----gg B D Horse cccgagccggcg--tggggctgccg-gctgcagac-accgctgcgggc-----gg B D Chinese pangolin cccaggcaggcg--tggggctgccg-gctgcagac-actgctgcgagc-----aa B D Dog cctgagccggcg--tggggctgctg-gctgcagac-accgctgcgggc-----gg B D Hawaiian monk seal cctgagcgggcg--tggggctgctg-gctgcagac-accgctgcggac-----ag B D Hedgehog cccgagcgggtg--tggggctgcgg-gctgccgac-gccgctgcgggg-----ag B D Shrew cccgagccggcg--aggggctgccg-gcggcagac-gccgctgcggac-----ag B D Elephant ccggagccggct--tggggccgccg-gctgcagac-gccgctgcaggc-----ac B D Tenrec ccgaggccggcttgtggggctgcag-gcagcaggc-gacgctgcaggt-----tg B D Zebrafish ======================================================= B D X. tropicalis ======================================================= B D Opossum ======================================================= B D Chicken ======================================================= Alignment block 5 of 313 in window, 56744392 - 56744453, 62 bps B D Mouse cttgct-----------c-ac--------------ga-------------------gtc----------- B D Rat cttgct-----------c-ac--------------ga-------------------atc----------- GCF_003668045 cttgct-----------t-ac--------------cg-------------------atc----------- Beaver tttgct-----------t-gg--------------gg-------------------atc----------- B D Squirrel cttgtt-----------tggg--------------gg-------------------att----------- B D Guinea pig cttgct-----------t-gc--------------g--------------------atc----------- B D Rabbit cttgct-----------c-cg--------------gg-------------------atc----------- B D Pika tttgtt-----------tggg--------------gg-------------------atc----------- B D Human cttgct-----------t-gg--------------gg-------------------atcactacggccgg B D Chimp cttgct-----------t-gg--------------gg-------------------atcactacggccgg B D Bonobo cttgct-----------t-gg--------------gg-------------------atcactatggccgg B D Gorilla cttgct-----------t-gg--------------gg-------------------atcactacggccgg B D Rhesus cttgct-----------t-gg--------------gg-------------------atcactacggccgg B D Marmoset cttgct-----------t-gg--------------gg-------------------atcac--------- B D Tarsier cttgat-----------c-cg--------------gg-------------------atc----------- B D Bushbaby cgtgct-----------t-gg--------------gg-------------------atc----------- B D Tree shrew cttgct-----------t-gg--------------gg-------------------atc----------- B D Malayan flying lemur cttgct-----------t-tg--------------gg-------------------atc----------- B D Pig cttgtt-----------t-gg--------------gg-------------------atc----------- B D Dolphin cttgtt-----------t-gg--------------gg-------------------atc----------- B D Cow cttgtt-----------t-gg------------------------------------------------- B D Sheep cttgtt-----------t-gg------------------------------------------------- B D Horse cttgtt-----------c-gg--------------gg-------------------atc----------- B D Chinese pangolin ctagtt-----------t-gg--------------gc-------------------atc----------- B D Dog cttgtt-----------t-gg--------------gg-------------------atc----------- B D Hawaiian monk seal tttgtt-----------t-gg--------------gg-------------------atc----------- B D Hedgehog cttgtt-----------t-gg--------------ggcggggggggggagggcataatc----------- B D Shrew cttgtt-----------t-gg--------------gg-------------------atc----------- B D Elephant ctcgct-----------c-gt--------------gg-------------------agc----------- B D Tenrec cccgct-----------c-ggtggtgggtgggtgagg-------------------gtc----------- B D Opossum cttactcttcaccaagat-aa--------------gt-------------------atagtctcgactcc B D Zebrafish ====================================================================== B D X. tropicalis ====================================================================== B D Chicken ====================================================================== Mouse -aga--t--gc----cgcagctacgagt--ccccgcacactctggaaattgtat---tatta Rat -aga--t--gc----agcagctacgagt---cccgcacactctggaaattgtat---tatta GCF_003668045 -aga--t--gc----agcagctacgcgt---cccgcacgctgtggaaattgtat---tatta Beaver -aga--t--gc----ggcagttggaagt---cccgcacgatgtggaaattgtag---tattc Squirrel -aga--t--gt----gactgctagcagt---ctcctacgttgtggaaattgtaa---tattc Guinea pig -aga--t--gc----agcagctaagagt---cccatatgatgtggaaattgtag---ta--- Rabbit -aga--g--gc----gg-tgcgaggagg---ccggtgcgcggtggaaattgtag---tattc Pika -cca--g--gc----ggctgcgaggaggagatcggtgagcagtggaaattgtag---tg--- Human gagaagt--ct----ggccgggaggagt---ccagcacgccttggaaattgaag---tatt- Chimp gagaagt--ct----ggccgggaggagt---ccagtacgccttggaaattgaag---tatt- Bonobo gagaagt--ct----ggccgggaggagt---ccagcacgccttggaaattgaag---tatt- Gorilla gagaagt--ct----ggccgggaggagt---ccagcaggccttggaaattgaag---tatt- Rhesus gagc---------------------agt---ccagcacgcggtggaaattgaag---tattc Marmoset -aga------c----gcccgggaggagt---ccagcacgcggtggaaattgaag---tatt- Tarsier -aga--t--gc----ggccgcgaggagc---tcggcgcgctgtggaaattgtag---tattc Bushbaby -aga--t--ga----ggccgcgacgagt---ac-gcgcgcagtggaaattgtag---tattc Tree shrew -aga--t--gc----cgctgcgaggagt---ctagcacgctgtggaaattgtaggattcttc Malayan flying lemur -aga--t--gc----ggtctcgaggagt---ccggcacgctggggaaaatgtag---tgttc Pig -tga--tgggc----ttcgaggagaagt---cgggcaccctgtggaaattgcag---tattc Dolphin -aga--t--gc----ggccgcgaggagt---cgggcacgctgtggaaactgcag---tgttc Cow -----------------------ggagt---cggggactctgtagaaattgcag---tattc Sheep -----------------------ggagt---cggggactctgtagaaattgcag---tattc Horse -aga--t--gc----ggccgcgaggagt---cgggcaccctgtggaaattgcag---tattc Chinese pangolin -aga--t--gc----ggccgtgaggagt---cgggcaccctatggaaattgcag---tattc Dog -aga--t--gc----ggccgcgaggagt---cgggcaccctgtggaaattgcag---tattc Hawaiian monk seal -aga--t--gc----ggccgcgaggagt---tgggcaccctgtggaaattgcag---tattc Hedgehog -tgt--t--gt----ggccgcgagaagt---cgggcgccctgtggaaatggcag---tgttc Shrew -act--t--gc----ggccccgaggagt---agggcacccagtagaaattgcag---tattc Elephant -aga--t--tc----ggccgcgaggagt---ccggcgcacgggggaaattgcag---agttt Tenrec -aga--t--gcggctggccgggaagagc---ccggcactagggggaaatggcag---agttc Opossum caga--t--gc----agactcacatagc--aagagcttttcattgaaattgcag---ggttc Zebrafish ============================================================== X. tropicalis ============================================================== Chicken ============================================================== Alignment block 6 of 313 in window, 56744454 - 56744454, 1 bps B D Mouse t B D Rat t GCF_003668045 t Beaver t B D Squirrel t B D Guinea pig t B D Rabbit t B D Pika t B D Rhesus t B D Tarsier t B D Bushbaby t B D Tree shrew t B D Malayan flying lemur g B D Pig t B D Dolphin t B D Cow t B D Sheep t B D Chinese pangolin t B D Elephant t B D Tenrec t B D Opossum c B D X. tropicalis t B D Hawaiian monk seal - B D Dog - B D Horse - B D Marmoset - B D Gorilla - B D Bonobo - B D Chimp - B D Human - B D Hedgehog - B D Zebrafish = B D Chicken = B D Shrew - Inserts between block 6 and 7 in window B D Elephant 3bp B D Tenrec 3bp B D Opossum 3bp Alignment block 7 of 313 in window, 56744455 - 56744531, 77 bps B D Mouse tctc---ggattc-------tggcaatcagggcaaatttgctcaggcaggaagttcaaatgtcacctaat B D Rat tctc---ggattc-------tggcaatcaggccaaatttgctcaggcaggaagttcaaatgtcacctaat GCF_003668045 tctc---ggattc-------tggcaatcaggccaaatttgctcaggcaggaagttcaaatgtcacctaat Beaver tctc---ggattc-------tggcaatcaggccaaatttgctcaggcaggaagttcaaatgtcacctaat B D Squirrel tctt---ggattc-------aggcaatcaggccaaattcgctcaggcaggaagttcaaatgtcacctaat B D Guinea pig tctc---ggattc-------tggcaatcaggctaaatttgctcaggcaggaagttcaaatgtcacctaat B D Rabbit tctc---ggatac-------tggcaatcagaccaaatttgctcaggcaggaagttcaaatgtcacctaat B D Pika tctc---agattc-------tggcaatcagaccacatttgctcaggcaggaagttcaaatgtcacctaat B D Human -ctc---cgattc-------tggtaatcaggccaaatttgctcaggcaggaagttcaaatgtcacctaat B D Chimp -------cgattc-------tggtaatcaggccaaatttgctcaggcaggaagttcaaatgtcacctaat B D Bonobo -------cgattc-------tggtaatcaggccaaatttgctcaggcaggaagttcaaatgtcacctaat B D Gorilla -ctc---cgattc-------tggtaatcaggccaaatttgctcaggcaggaagttcaaatgtcacctaat B D Rhesus tctc---cgattctggattgtggtaatcaggccaaatttgctcaggcaggaagttcaaatgtcacctaat B D Marmoset -ctc---ccattt-------tggcaatcaggccaaatttgctccggcaggaagttcaaatgtcaactaat B D Tarsier tctc---ggattc-------tggcaatcaggccaaatttgctcaggcaggaagttcaaatgtcacctaat B D Bushbaby tctt---ggattt-------tggcaatcaggccaaatttgctcaggcaggaagttcaaatgtcacctaat B D Tree shrew tctc---ggattc-------tggcaatcaggctaaatttgctcaggcaggaagttcaaatgtcacctaat B D Malayan flying lemur tctc---ggattc-------tggcaatcaggccaaatttgctcaggcaggaagttcaaatgtcacctaat B D Pig tctt---ggattc-------tggtaatcagaccaaatttgctcaggcaggaagttcaaatgtcacctaat B D Dolphin tctt---gcattc-------tggcaatcagaccaaatttgctcaggcaggaagttcaaatgtcacctaat B D Cow tctt---gcattc-------tggcaatcagaccaaatttgctcaggcaggaagttcaaatgtcacctaat B D Sheep tctt---gcattc-------tggcaatcagaccaaatttgctcaggcaggaagttcaaatgtcacctaat B D Horse --tt---ggattc-------tggcaatcaggccaaatttgctcaggcaggaagttcaaatgtcacctaat B D Chinese pangolin tttt---ggattc-------tggcaatcaggtcaaatttgctcaggcaggaagttcaaatgtcacctaat B D Dog --tt---ggattc-------tggcaatcaggccaaatttgctcaggcaggaagttcaaatgtcacctaat B D Hawaiian monk seal --tt---ggattc-------tggcaatcaggccaaatttgctcaggcaggaagttcaaatgtcacctaat B D Hedgehog --tt---ggattc-------tggcaatcaggctaaatttgctcaggcaggaagttcaaatgtcacctaat B D Shrew --ttcgaggattc-------tggcaatcaggccaaatttgctcaggcaggaagttcaaatgtcacctaat B D Elephant tctc---gggttc-------tggcaatcaggccaaatttgctcaggcaggaagttcaaatgtcacctaat B D Tenrec tctc---gggttc-------tggcaatcaggccaaatttgctcaggcaggaagttcaaatgtcacctaat B D Opossum tctc---ggattc-------tcgcaatcaggccaaatttgctcagacaggaagttcaaatgtcacctaat B D Chicken tctc---cgcttt-------tcgcaatcaggccaaatgcgctcaggcaggaagttcaaatgtcacctaat B D X. tropicalis tctc---tgcctt-------gtgcaatcagactaaattcacccagacaggaagttcaaatgtcagataat B D Zebrafish ====================================================================== Mouse tggtttcattcttatgc Rat tggtttcattcttatgc GCF_003668045 tggtttcgttcttatgc Beaver tggtttcattcttatgc Squirrel tggtttcattcttatgc Guinea pig tggtttcattcttatgc Rabbit tggtttcgttcttatgc Pika tggtttcgttcttatgc Human tggtttcgttcttatgc Chimp tggtttcgttcttatgc Bonobo tggtttcgttcttatgc Gorilla tggtttcgttcttatgc Rhesus tggtttcgttcttatgc Marmoset tggtttcgttcttatgc Tarsier tggtttcattcttatgc Bushbaby tggtttcattcttatgc Tree shrew tggtttcattcttatgc Malayan flying lemur tggtttcattcttatgc Pig tggtttcattcttatgc Dolphin tggtttcattcttatgc Cow tggtttcattcttatgc Sheep tggtttcattcttatgc Horse tggtttcattcttatgc Chinese pangolin tggtttcattcttatgc Dog tggtttcattcttatgc Hawaiian monk seal tggtttcattcttatgc Hedgehog tggtttcattcttatgc Shrew tggtttcattcttatgc Elephant tggtttcattcttatgc Tenrec tggtttcattcttatgc Opossum tggtttcattcttatgc Chicken tgccttaattctgatgc X. tropicalis tggtttcattcttaggc Zebrafish ================= Inserts between block 7 and 8 in window B D X. tropicalis 2818bp Alignment block 8 of 313 in window, 56744532 - 56744608, 77 bps B D Mouse ttcacttcattttcctcggaaacggag-------------gtctc-------ggt----ctct------- B D Rat ttcacttcattttcctc-----------------------gtcgc-------gct----ctct------- GCF_003668045 ttcacttcattttcttcggaaacggaggttcgggttcctagtctc-------tct----ctct------- Beaver ttcacttcattttcctcggaaacggag-------------gtcct-------ggt----tactac-ta-- B D Squirrel ttcacttcattttcctcggaaacggag-------------gtccc-------gct----tactgc-ta-- B D Guinea pig ctcacttcattttcctcggaaacccag-------------gtcct-------ggt----tgctag-ta-- B D Rabbit ttcacttcattttcctcggaaacggag-------------gtccc-c----aagt----tactac-ta-- B D Pika ttcacttcattttcctcggaaatggag-------------gtcctga----aagt----tattgcttt-- B D Human ttcacttcattttcctcggaaatggag-------------gtccc-g----aagt----tactac-ta-- B D Chimp ttcacttcattttcctcggaaatggag-------------gtccc-g----aagt----tactac-ta-- B D Bonobo ttcacttcattttcctcggaaatggag-------------gtccc-g----aagt----tactac-ta-- B D Gorilla ttcacttcattttcctcggaaatggag-------------gtcct-g----aagt----tactac-ta-- B D Rhesus ttcacttcattttcctcggaaatagag-------------gtccc-g----aagt----tactac-ta-- B D Marmoset ttcacttcattttcctcggaaatggag-------------gtccc-g----aagt----tactac-ta-- B D Tarsier ttcacttcattttcctcggaaaccgag-------------gtccc-c----aagt----tactac-caa- B D Bushbaby ttcagttcattttcctcggaaaccgag-------------gtccc-g----aagt----tactac-ta-- B D Tree shrew ttcacttcattttcctcggaaatggag-------------gtctc-a----aagt----tactac-ta-- B D Malayan flying lemur ttcacttctttttcctcggaaacagag-------------gtccc-g----aagt----cactac-ta-- B D Pig ttcacttcattttcctcggaaacggag-------------gtccc-a----aagt----tactac-ta-- B D Dolphin ttcacttcattttcctcggaaacggag-------------gtcct-g----aagt----tactac-ta-- B D Cow ttcacttcattttcctcggaaacggag-------------gtccc-g----aagt----tactac-ta-- B D Sheep ttcacttcattttcctcggaaacggag-------------gtccc-g----aagt----tactat-ta-- B D Horse ttcacttcattttcctcggaaaccgag-------------gtccc-g----aagt----tactac-ta-- B D Chinese pangolin ttcacttcattttcctcggaaacggag-------------gtccc-g----aagt----tactac-ta-- B D Dog ttcacttcattttcctcggaaacggag-------------gtccc-c----aagt----tactac-ta-- B D Hawaiian monk seal ttcacttcattttcctcggaaacggag-------------gtccc-g----aagt----tactac-ta-- B D Hedgehog ttcacttcattttc-------------------------------------------------------- B D Shrew ttcgcttcattttcctcggaaacagag-------------gtccc-g----acgt----tactac-ta-- B D Elephant ttcacttcattttcctcggaaacggag-------------gtcca-g----aagt----tactac-ta-- B D Tenrec ttcacttcattttcctcggaaatggaa-------------gtccc-g----aagt----tactac-ta-- B D Opossum ttcacttttt--------gaaacagcgagt----------gagcc-a----aaatagaaaaccat-cg-- B D Chicken tgta-----ttttccttcgaagcggtg-------------gtccg-ggaaaacga----aacccc-gaag B D Zebrafish ====================================================================== B D X. tropicalis ====================================================================== Mouse -----ctctctctct--------------------c------tc-tctctctc----------------- Rat -----ctctctctct--------------------c------tc-tctctctc----------------- GCF_003668045 -----ctctctctct--------------------c------tc-tctctctc----------------- Beaver gt--aacttgtatat--------------------a------gc-tcattccg----------------- Squirrel gt-aactttgtaact--------------------t------gcatttagctg----------------- Guinea pig ac-atgcttgta-at--------------------c------tc-tctccccg----------------- Rabbit gt-a-acttgcatga--------------------a------gc-tcaatccg----------------- Pika gt-a-acttacatgt--------------------a------gc-tcgttctg----------------- Human gt-a-acttgcatgt--------------------a------ac-tcattcccaga-------------- Chimp gt-a-acttgcgtgt--------------------a------ac-tcattcccaga-------------- Bonobo gt-a-acttgcgtgt--------------------a------ac-tcattcccaga-------------- Gorilla gt-a-acttgcatgt--------------------a------ac-tcattcccaga-------------- Rhesus gt-a-acttgcatgt--------------------a------ac-tcattcccaga-------------- Marmoset -------------ct--------------------a------ac-tcattcccaga-------------- Tarsier gt-a-acttgcatgt--------------------a------ac-tcattcccgga-------------- Bushbaby gt-a-actt---tct--------------------c------tc-tctttctc----------------- Tree shrew gt-a-acttacatgt--------------------a------gc-tca---------------------- Malayan flying lemur gc-a-tctt---tgt--------------------a------gc-tcattccaggattctctctctctct Pig gt-a-actta-aggt----tactg-----------c---atcgc-tcattctggga-------------- Dolphin gt-a-acttgcgtgt----tacag-----------c---attgc-tcattctggga-------------- Cow gt-a-acttgcatgttagatagag-----------c---attgc-tcattctggga-------------- Sheep gt-a-acttgcatgt----tagag-----------c---attgc-tcattctggga-------------- Horse gt-a-acctgcatgt----tactg-----------c---attgc-tcattctggga-------------- Chinese pangolin gt-a-acttgcatgt----tactgggactaattccc---gttgc-tcattctggga-------------- Dog gt-a-acttgcatgt----tgctg-----------c---attgc-tcattctggga-------------- Hawaiian monk seal gt-a-acttgcatgt----tactg-----------c---attgc-tctttctggga-------------- Hedgehog ------tgtgcatgt----gactg-----------c---attgc-ttattctcaca-------------- Shrew gt-a-acttgtatgt----tactg-----------cgcagttgc-tcattctagga-------------- Elephant gt-a-acttgcatgt--------------------a------gc-tcattccggga-------------- Tenrec gt-a-acttgcatgt--------------------a------gc-tcattccggga-------------- Opossum gtta-ttttgcctgg--------------------t------tc-tccttccagga-------------- Chicken gt-t-tgctccctgt--------------------a------aa-ccttccac----------------- Zebrafish ====================================================================== X. tropicalis ====================================================================== Mouse -----------------------------------------tctctctc---------tctctc-----t Rat -----------------------------------------tctctctc---------tctctc-----t GCF_003668045 -----------------------------------------tctctctc---------tctctc-----t Beaver -----------------------------------------tctctctc---------tctctc-----t Squirrel -----------------------------------------attccggg---------ttcccc-----t Guinea pig -----------------------------------------cctctgtc---------tttctc-----t Rabbit -----------------------------------------gctcgcgc---------tctctc-----t Pika -----------------------------------------gcgcgctc---------tctctc-----t Human --------------------------cgaagtcatattcacattctctc---------tctctc-----t Chimp --------------------------cgaagtcatattcacattctctc---------tctctc-----t Bonobo --------------------------cgaagtcatattcacattctctc---------tctctc-----t Gorilla --------------------------cgaagtcatattcacattctctc---------tctctc-----t Rhesus --------------------------tgaagtcatattcacattctctc---------tctctc-----t Marmoset --------------------------cgaggtcatattctctctctctc---------tctctc-----c Tarsier --------------------------agaattcat----------tctc---------tctctc------ Bushbaby ------------------------------------tccctctctcctc---------tctttc-----t Tree shrew ----------------------------------------------ttcagagaggaattttgt-----g Malayan flying lemur ctctctctctctctctctctctctctctctctctctctctctctctctc---------tctctc-----t Pig --------------------------ctaa-----------ttttctgc---------tttatt-----t Dolphin --------------------------ctaa-----------ttttctgc---------tttatt-----t Cow --------------------------cgaa-----------ttttctgc---------tttatt-----t Sheep --------------------------ctaa-----------ttttctgc---------tttatt-----t Horse --------------------------ctaa-----------ttttctgc---------tttatt-----t Chinese pangolin --------------------------ctaa-----------ttttctgc---------tttatt-----t Dog --------------------------ctca-----------ttttctgc---------tttatt-----t Hawaiian monk seal --------------------------ctaa-----------ttttctgc---------tttatt-----t Hedgehog --------------------------ctga-----------ttttcttt---------at--tt-----c Shrew --------------------------ctag-----------ttttcttc---------tttatt-----t Elephant --------------------------ctaa-----------ttttctgc---------tttattac--tt Tenrec --------------------------ctaa-----------ttttctgc---------tgtattac--tt Opossum -------------------------actaa-----------ttttctgc---------tttattaccgtt Chicken -----------------------------------------cttctttc---------tgtttc-----t Zebrafish ====================================================================== X. tropicalis ====================================================================== Mouse ct---- Rat ct---- GCF_003668045 ct---- Beaver ct---- Squirrel tt---- Guinea pig tc---- Rabbit cc---- Pika ct---- Human ct---- Chimp ct---- Bonobo ct---- Gorilla ct---- Rhesus ct---- Marmoset ct---- Tarsier ct---- Bushbaby ct---- Tree shrew ct---- Malayan flying lemur ct---- Pig ct---- Dolphin ct---- Cow ct---- Sheep ct---- Horse ct---- Chinese pangolin ct---- Dog ct---- Hawaiian monk seal ct---- Hedgehog ct---- Shrew ct---- Elephant ct---- Tenrec ct---- Opossum ct---- Chicken ccgcct Zebrafish ====== X. tropicalis ====== Inserts between block 8 and 9 in window B D Chicken 732bp Alignment block 9 of 313 in window, 56744609 - 56744624, 16 bps B D Mouse ctctctccc----------------------------------cttacct B D Rat ctccccccccctctct---------------------------ctccccc GCF_003668045 ctctctctctctctctctctct--ctctctctctc--------ctccctc Beaver ctgcccccc----------------------------------------- B D Squirrel ctcctcccc----------------------------------------- B D Guinea pig cttccttcccttttttctcccttccttctttcctt--------cttcctt B D Rabbit ct------------------------------------------taacgt B D Pika ctctctctctctctctctct-----------------------ctcacac B D Human ttctctctc----------------------------------cattcac B D Chimp tgctctctc----------------------------------cattcac B D Bonobo tgctctctc----------------------------------cattcac B D Gorilla ttctctctc----------------------------------cattcac B D Rhesus ctctctctctctctctctctctctctctctctctctctctcatcattcac B D Marmoset ctacctctc----------------------------------ccc---- B D Tarsier cccccccaa----------------------------------cattctg B D Bushbaby ctatctcttggtctcggcctctctttctttcg-----------tattcct B D Tree shrew ttctcgctcacagat----------------------------ca----- B D Malayan flying lemur ctctctctctctcgt----------------------------catttac B D Pig ctct--------------------------------------------cc B D Dolphin ctctttgtcctccccctcct-----------------------cccccct B D Cow ctctttctc----------------------------------ccgctct B D Sheep ctctttctc----------------------------------ccgctct B D Horse ctctctctctccctcc---------------------------cctc--- B D Chinese pangolin ctctccctctttttcc---------------------------cctccct B D Dog ctctctctctctctctctctctctctctg--------------cctctct B D Hawaiian monk seal ctctctctctctccc----------------------------cctctct B D Hedgehog ttctcctttatgtgaa---------------------------tatatat B D Shrew tcctccctgacttaaa---------------------------aaaaaat B D Elephant ctctctcttgatctag---------------------------tcgttct B D Tenrec cacgcgcttgctctatctctcgc--------------------tcgctct B D Opossum ttccgcttttct-------------------------------------- B D Zebrafish ================================================== B D X. tropicalis ================================================== B D Chicken ================================================== Inserts between block 9 and 10 in window B D Rabbit 73bp B D Pika 9bp B D Human 2bp B D Chimp 2bp B D Bonobo 2bp B D Gorilla 2bp B D Rhesus 2bp B D Tarsier 2bp B D Bushbaby 2bp B D Tree shrew 2bp B D Malayan flying lemur 2bp B D Pig 22bp B D Dolphin 23bp B D Cow 23bp B D Sheep 23bp B D Horse 4bp B D Chinese pangolin 7bp B D Dog 27bp B D Hawaiian monk seal 27bp B D Hedgehog 19bp B D Shrew 15bp B D Elephant 6bp B D Tenrec 6bp Alignment block 10 of 313 in window, 56744625 - 56744628, 4 bps B D Mouse c--cca B D Rat c--cta GCF_003668045 c--ctc B D Guinea pig cttctt B D Pig t----- B D Dolphin t----- B D Cow t----- B D Sheep t----- B D Horse t----- B D Chinese pangolin c----- B D Dog c----- B D Hawaiian monk seal c----- B D Hedgehog g----- B D Shrew g----- B D Opossum --ttca B D Rhesus ====== B D Marmoset ------ B D Gorilla ====== B D Bonobo ====== B D Chimp ====== B D Human ====== B D Tenrec ====== B D Tarsier ====== B D Tree shrew ====== B D Pika ====== B D Zebrafish ====== B D X. tropicalis ====== B D Chicken ====== B D Elephant ====== B D Squirrel ------ B D Rabbit ====== B D Bushbaby ====== Beaver ------ B D Malayan flying lemur ====== Inserts between block 10 and 11 in window B D Opossum 172bp Alignment block 11 of 313 in window, 56744629 - 56744677, 49 bps B D Mouse cccacct---------------------ccctt---aac--agacgtta--att---------------- B D Rat accactt---------------------tcctt---aac--agacgtta--att---------------- GCF_003668045 ccctcctcacacctcccccttgc-----ccctt---aac--agacgtta--att---------------- Beaver -ccacct---------------------cccat---tac--------------t---------------- B D Squirrel -ccacctcactttt--------------acctt---aacagagacatca--a-t---------------- B D Guinea pig tcctcctgctgtgtcca-----------ctctg---aag--agacat------c---------------- B D Pika -----------------cacaca-----cacac---aac--ctaccata--t-t---------------- B D Human --------------------tct-----aactt---aac--agacttca--c-t-gtatata-------- B D Chimp --------------------tct-----aactt---aac--agacttca--c-t-gtatata-------- B D Bonobo --------------------tct-----aactt---aac--agacttca--c-t-gtatata-------- B D Gorilla --------------------tct-----aactt---aac--agacttca--c-t-gtatata-------- B D Rhesus --------------------tct-----aactt---aac--agacttca--c-t-gtatata-------- B D Marmoset ------------------------------ctt---aac--agacttca--c-c-gtgtgta-------- B D Tarsier --------------------ttt-----acatg---aac--agatttca--c-taatacata-------- B D Bushbaby --------------------cca-----aaatt---cac--acttttac--c-t-tcacaga-------- B D Tree shrew --------------------ttt-----acctt---aac--agacttca--c-t-atatcta-------- B D Malayan flying lemur --------------------ttt-----atctt---aac----acttca--c-tcatacata-------- B D Pig --------------------ttt-----acctt---aat--atatatatata-t-atacatatatatttc B D Dolphin --------------------ttt-----acctt---aac--agatttcacta-c-atatatg-------- B D Cow --------------------tct-----acctt---aac--agattttagca-c-atatata-------- B D Sheep --------------------ttt-----acctt---aac--agattttagca-c-atatata-------- B D Horse --------------------ttt-----atctt---aac--agtcttca--c-t-atatata-------- B D Chinese pangolin --------------------ttt-----accat---aac--agacttca--c-t-atacgta-------- B D Dog --------------------ttt-----acctt---agc--cgacttcagtc-t-gtgtgta-------- B D Hawaiian monk seal --------------------ttt-----atctt---aac--agacttca--c-t-atatgta-------- B D Hedgehog --------------------tac-----actta---cat--acatttctaat-a-atatgtg-------- B D Shrew --------------------tat-----atatagattat--atactatagat-t-atacaca-------- B D Elephant ----------------------------acctt---acc--agacgtca--a-t---atcta-------- B D Tenrec --------------------cctcgttgccctt---aac--cgacttcg--a-t---atata-------- B D Zebrafish ====================================================================== B D X. tropicalis ====================================================================== B D Opossum ====================================================================== B D Chicken ====================================================================== B D Rabbit ====================================================================== Mouse --------------------------atcaaccca--gtagt-----tgaggtgac Rat --------------------------atcaaccca--gtagt-----taaggtgac GCF_003668045 --------------------------atcaaccct--gcagt-----tagggtgac Beaver --------------------------accactgca--atgat-----taagacaaa Squirrel --------------------------accactgca-tatgac-----gcagacaaa Guinea pig --------------------------accatcacaaaatgac-----caagaccaa Pika --------------------------atctatcta--tcttg-----gaaagtggc Human tcttaggaagggaagtggca---tcagccactgca--gtgat-----ggagat--- Chimp tcttaggaagggaagtggca---tcagccactgca--gtgat-----ggagat--- Bonobo tcttaggaagggaagtggca---tcagccactgca--gtgat-----ggagat--- Gorilla tcttaggaagggaagtggca---tcagccactgca--gtgat-----ggagat--- Rhesus tcttaggaagggaagtggcc---tcagcaactgca--gtgat-----ggagat--- Marmoset tcttaggaggggaagtggca---t------ctgca--gtgat-----ggaaat--- Tarsier tcttggcaagagaagtggca---tcaaccacttgg--gcgag-----ggagac--- Bushbaby cttaag---ggaaagtggcc---tcaacaactgcg--gtgat-----ggaaac--- Tree shrew ccttaggaagggaagtgaca---cccaccactgtg--gtgaa-----gacaa---- Malayan flying lemur ccgtgggaagagaggtggca---ccagccatggcg--gtgat-----ggagac--- Pig tattag-----agagtggca---ctaaccatcgct--gtgat-----ggaggg--- Dolphin tcttag-----gaagtggca---ccaactactgct--gtgat-----ggagag--- Cow tcctag-----gaagtggca---ccaatcaccgct--aaaat-----gaaggg--- Sheep tcctag-----gaagtggcg---ccaaccaccgct--ataat-----gaaggg--- Horse tcttag-----gaagtggca---ccaaccaccgct--gtgat-----ggagcc--- Chinese pangolin tcttag-----gaagtggta---ctaaccacctct--ttgag-----ggagtc--- Dog tcttag-----gaagtggcaccccccccccccgca--gggat-----ggaaac--- Hawaiian monk seal tcttag-----gaagtggca---ccaaccactgct--gtgat-----gggaac--- Hedgehog t--tag-----aaagtgtca---ccagcaatcact--taagtac---tagata--- Shrew ca-tag-----atatatgta---cacatatgcacg--ttcatacacatatata--- Elephant tctcag-----gcagtggaa---ccgatcactgta--gtgat-----ggaaag--- Tenrec tcttaa-----gcagtggca---tccaaccctgcg--gtggt-----ggaaag--- Zebrafish ======================================================== X. tropicalis ======================================================== Opossum ======================================================== Chicken ======================================================== Rabbit ======================================================== Inserts between block 11 and 12 in window B D Human 1bp B D Chimp 1bp B D Bonobo 1bp B D Gorilla 1bp B D Rhesus 1bp B D Marmoset 1bp B D Tarsier 1bp B D Bushbaby 1bp B D Malayan flying lemur 1bp B D Pig 1bp B D Dolphin 1bp B D Cow 1bp B D Sheep 1bp B D Horse 1bp B D Dog 1bp B D Hawaiian monk seal 1bp B D Hedgehog 1bp B D Shrew 1bp B D Elephant 1bp Alignment block 12 of 313 in window, 56744678 - 56744713, 36 bps B D Mouse aattgc-taggtgat------t-----------cgct-gttgt--ccattcggctgc B D Rat aattgc-ttggtgat------t-----------cgct-gttgt--cctttcggctgc GCF_003668045 aattgc-ttgatgat------t-----------cgct-gttgt--cctttcggctgc Beaver a--tgc-atggtgat------t-----------ccat-gttgt--cctttctactgt B D Squirrel a-------------t------t-----------atat-gccgt--cctttctactgt B D Guinea pig a--tgt-aagagggtaaagaat-----------ccaa-gtgtt--ctttttcactgt B D Rabbit aagtgc-atggcgac------t-----------ccat-gccgt--cctttccac-gt B D Pika -----a-gcggccac------t-----------ccctggccgt--cctttctactgt B D Human aaatgc-a-ggcaat------t-----------ccat-gctg---tccttttactgt B D Chimp aaatgc-a-ggcaat------t-----------ccat-gctg---tccttttactgt B D Bonobo aaatgc-a-ggcaat------t-----------ccat-gctg---tccttttactgt B D Gorilla aaatgc-g-ggcaat------t-----------ccat-gctg---tccttttactgt B D Rhesus aaatgc-a-ggcaat------t-----------ccat-gctg---tccttttacggt B D Marmoset aaatgc-a-ggcgat------t-----------ccat-gccgt--tctttttactgt B D Tarsier aaatgcaa-ggcgat------t-----------ccat-gccg---tctttctaccgc B D Bushbaby aaatgg-atggcgat------t-----------ccaa-gctgt--tttttctactgt B D Tree shrew aaatgt-agagcgat------t-----------ccat-gctgt--tcattttattgt B D Malayan flying lemur aaatgc-atggcggt------t-----------ccat-acggtcctctttctactgt B D Pig aaatgc-acagtgat------t-----------ccat-gctgt--cctcaattc--t B D Dolphin aaattc-ac-gcgat------t-----------tcat-gctgt--cctcttttctgt B D Cow aaatgc-acggcgat------t-----------ccac-gctgt--cctctcttctgt B D Sheep aaatgc-acggcgat------t-----------ccac-gctgt--cctctcttctgt B D Horse aaatgt-atggcgat------t-----------ccgt-gctgt--cctgtcttctgt B D Chinese pangolin aaatgc-atgacgat------t-----------tcat-gttgt--cctctcttcttt B D Dog aaatgc-atggtgat------t-----------tcat-cttgt--cctctcttctt- B D Hawaiian monk seal aaatgc-agggtgat------t-----------tcat-cacgt--cctctcttctt- B D Hedgehog aaatgc-aggggact------t-----------ccac-gctgc--cctcttaaccgg B D Shrew gtattc-atacatct------tagtgttatcaaccac-actat--actaatgtcttt B D Elephant aaatgc-ctgacgat------t-----------ccac-gcctt--cctttcttccgt B D Tenrec ------------------------------------t-ggctt--cctttcctctg- B D Zebrafish ========================================================= B D X. tropicalis ========================================================= B D Opossum ========================================================= B D Chicken ========================================================= Alignment block 13 of 313 in window, 56744714 - 56744883, 170 bps B D Mouse --tgt----c--tc-------tggt-tcccccc-agcctcc-tgctttcctta--------gggt--cct B D Rat --tgt----c--tc-------tgtc-tcccccc---ccccc-ccccaccctcc--------ggcttccct GCF_003668045 --ccc----ccgcc-------cgcc-cccctcccaggctcc-cgctttcctta--------gcgt--cct Beaver --tct----t--tt-------ggct-tctctgc------------tttttctg--------gggt--cct B D Squirrel --ttt----c--cc-------cgga-gcctgcc---------cctttctttta--------gggt--ccc B D Guinea pig --tct----c--ac-------ctgc-ttttcctaagccttcagctttccttta--------gggt--cct B D Rabbit --tct----t--tc-------cag-------------ttct----------------------at--cgg B D Pika --tct----c--cc-------cagc-ctgctttttgcctca----------------------gt--ccg B D Human --tct----t--tt-------cagt-tttccctgagcctgccactttcctttggggtccccgggt--ccc B D Chimp --tct----t--tt-------cagt-tttccctgagcctgccactttcctttggggtccccgggt--ccc B D Bonobo --tct----t--tt-------cagt-tttccctgagcctgccactttcctttg--------gggt--ccc B D Gorilla --tct----t--tt-------cagt-t-------agcctgccactttcctttggggtccccgggt--ccc B D Rhesus --tct----t--tt-------cagt-tttccctgagcctgccactttcctttg--------gggt--ccc B D Marmoset --tct----t--tt-------ccgt-ttaccctgagctttccgctttcctttg--------gggt--tct B D Tarsier --ttt----t--tc-------ccgt-gttccctgagcttgccgctttcctttg--------gggc--ccc B D Bushbaby --tct----t--tc-------ctgt-tttccctgagcctgcggttttcctttg----------------- B D Tree shrew --tct----t--tt-------ccgtgtttctctgagcctcctactttccttta--------gagt--ctc B D Malayan flying lemur --tct----t--tc-------ccgt-tttccttgcgcctgccgctttcctttt--------gggg--ccc B D Pig --cct----t--tc-------ccgt-tttacccatacctgctgcttcccttta--------gagt--ccc B D Dolphin --tct----t--tc-------ccgt-ttttcccgcgcctgccgcttcccttta--------gggt--ccc B D Cow --tct----t--tg-------ccgt-tttccccgcgcctgccgcttcccttta--------gggt--ccg B D Sheep --tct----t--tg-------ccgt-tttccccgcgcctgccgcttctcttta--------gggt--ccg B D Horse --tct----t--tc-------ccgt-ctctcccacgactgccacttccctttg--------gggt--acg B D Chinese pangolin --gcc----a--tt-------ccgc------------ctgccgcttcccttta--------gggt--ctc B D Dog ------------tc-------ccgt-tttccccaagcctgcggcttcccttta--------gggt--ccc B D Hawaiian monk seal ------------tc-------ctgg-tttccccaagcctgtggattcccttga--------gggc--ccc B D Hedgehog --accccccc--cc-------ccat-ttttccagtgtccgctggttccccgta--------gggt--ctc B D Shrew --cctgttct--tc-------ctcc-tttcccagctcctgcaacttttctttc---------tgt--ctc B D Elephant --ctt----t--cc-------ccgt-cttcccct---------------------------gccc--ctg B D Tenrec --cct----t--cc-------ccat-ttgcccct---------------------------gcgc--ccg B D Opossum tgtct----c--tccttagaactgt-ttgctctcggtttttctccttatctca--------actt--ctt B D Zebrafish ====================================================================== B D X. tropicalis ====================================================================== B D Chicken ====================================================================== Mouse cg-ggaac---------taggaaacgctagtggttgcg----tgcccctttcctg----caaagttt-cc Rat ag-agtac---------tgggaaatgctagtggtcgcc----ggcccttttcctg----caaacttt-cc GCF_003668045 cg--gtac---------tgggaaatgccagtggctacc----ggtcccctttccg----caga------- Beaver ct-ggtcc---------tggg-aacgcgagtggactcc----tacctagttcctg----cagg-ttt-tc Squirrel ct-agtcc---------ccgggaa-acaagtggacgtg----tatctagttcttg----cacg-ggt-tc Guinea pig cttggtcc---------ctggcatttcaagtgga-----------ccacctcctg----agtc------- Rabbit ag----cc---------cagggaccgcgagtgaacgcctgcttatttagcacttg----cacg-gtt-tc Pika ag--gtcc---------cagggactgccagcgaacacc----taaggaacttctg----cac--gtt-tc Human cg-ggtcc---------ccgagaatgcaagtggatatc----tatctagttcctg----catg-ttt-ta Chimp cg-ggtcc---------ccgagaatgcaagtggatata----tatctagttcctg----catg-ttt-ta Bonobo ca-ggtcc---------ccgagaatgcaagtggatata----tatctagttcctg----catg-ttt-ta Gorilla cg-ggtcc---------ccgagaatgcaagtggatatc----tatctagttcctg----catg-ttt-ta Rhesus cg-ggtcc---------ccgagaatgcaagtggatatc----tatctagttcctg----catg-ctt-tc Marmoset cg-ggtcc---------ccaagaatgcaagtggatatc----tatctagtttctg----caca-ttt-tc Tarsier ca-agtcc---------ccgatgatgcgagtggacgtc----tatctagttcctg----cacg-ttt-tt Bushbaby -g-ggtcc---------ccgagaatacgagtggacatc----tgtctagttcct---------------- Tree shrew ct-gacccggggagtgtccgggaatgcgagtggacgtc----tatctaggtcgtg----catg-ttt-tt Malayan flying lemur ct-gcccc---------ccgggaatgcaagtggacatc----tctctagttcccg----cacg-ttt-tc Pig cc-aggcc---------ccagaaacatgagtgga--------catctagtctctg----aacg-ttt-tc Dolphin cc-agtcc---------ccgggaatgtgagtgga--------catctagtccctg----aacg-ttt-tc Cow ac-agtcc---------cagggaattctagtgga--------catcccgtccctg----cacg-ttt-tc Sheep cc-agtcc---------cagggaatgctagtgga--------catcccgtccctg----cacg-ttt-tc Horse cg-ggtcc---------cagggaaggcaagtgga--------agtctagtcccgg----catg-ttt-tc Chinese pangolin cc-tgtcc---------ccgggaatgcgagtaga--------catctagtcattg----caca-ttt-tc Dog cc--gtcc---------ttgggaatgcatgcaga--------catctagtacctg----caca-ttt-tc Hawaiian monk seal cc-agtcc---------ctggggatgcaagtgga--------catctagtacctg------ca-ttt-tc Hedgehog ct-ggtct---------ccagcaacttgagtgga--------cattaacccctgt-------a-tgt-ta Shrew c--actct---------ctgggaa--tgcaggga--------cattgagtccctt----caag-ttt-tc Elephant cc-ggtcc---------tctggaatgcgagcggacat-----ttcgttgtccctg----aacg-ttt-tc Tenrec cc-agtcc---------gctggaatgcgagcggacag-----caagtagttcctg----aacg-tttgtt Opossum cc-acacc---------tagactaccagagtcaa--------agctgtgtttttgatttcgcg-ctt-tt Zebrafish ====================================================================== X. tropicalis ====================================================================== Chicken ====================================================================== Mouse -agcag-tgttt-ttt-------------------tccttttctgtgccggaacct-----tgctctgtc Rat -agcag-tgttc-ccc-------cc--------cacccctttctctgctggaacct-----tattctgtc GCF_003668045 --------------------------------------ttttttcagcctgaa-tt-----tgcgctgtt Beaver -agcgg-tgcca-ctc-------cactgttg--ctttcctttctcacccctgacct-----tgccgtgtc Squirrel -agcga-tgcca-ccc-------cactgttc--ctttcctttctcacccctgacct-----tgccgagtc Guinea pig ---------------------------------cttttctttcttacccctgactt-----tgctgtgtc Rabbit -actgg-tgccg-----------------------cccctc----------------------------- Pika -agcgt-tgcca-------------------------gctt----------------------------- Human -agcag-tgcca-ccc-------cactgttt--ctttcctttctcacccctgacct-----tgcctagtc Chimp -agcag-tgcca-ccc-------cactgttt--ctttcctttctcacccctgacct-----tgcctagtc Bonobo -agcag-tgcca-ccc-------cactgttt--ctttcctttctcacccctgacct-----tgcctagtc Gorilla -agcag-tgcca-ccc-------cactgttt--ctttcctttctcacccctgacct-----tgcctagtc Rhesus -agcag-tgcca-ccc-------cactgttc--ctttcctttctcacccctgacct-----tgcctagtc Marmoset -agcag-tgcca-ccc-------cactgtt---ctttcctttctcacccctgacct-----tgcctagtc Tarsier -agcgg-ggcca-ccccacacctcaccgttc--ctttcctttctcacccctgacct-----tgccttgtc Bushbaby ---------------c-------cactgttc--ctttcctttctcacccctgacct-----tgccttgtc Tree shrew gagcag-tgcca-ccc-------cactgttc--ctttcctttctcacccctgacct-----tgccgtgtt Malayan flying lemur -agcgg-tgcca-ccc-------cattgttt--cttttctttctcacccctgacct-----tgccctgtc Pig -agcag-tgaca-ccc-------cactgttc--ctttcctttctcacccttgacct-----tgcagtgtc Dolphin -agtgg-tg---------------------c--ctttcctttctcacccttgacct-----tgc-gtgtg Cow -agtgg-tgcca-ccc-------caccgttc--ctttcctttctcacccttgacct-----tgc-gtgtt Sheep -agtgg-tgcca-ccc-------cactgttc--ctttcctttctcacccttgacct-----tgc-gtgtt Horse -agggg-tgcca-ccc-------cgctgttc--ctttcctttctcatccttgacct-----tgcggtgtc Chinese pangolin -agtgg-tgtca-ccc-------cattgttc--ctttcctttctcacccttgacct-----tgctgtgtc Dog -agcgg-tgcca-ccc-------cactcttc--ctttcctttctcacccttgacct-----tgcggtgtc Hawaiian monk seal -ggcgg-tgccacccc-------cactgttc--ctttcctttctcacccttgacct-----tgctgggta Hedgehog -accgg--ccca-ccc-------catagttc--ctttccatcctcacccttgacct-----tgtggtgtg Shrew -actgggtgcca-ccc-------cacggtct--ttttc--ttttcacccttgacct-----tgcagggtt Elephant -ggcga-tgcca-ccc-------cactgttc--ctttccattttcacctctgacct-----tgccgggtc Tenrec -ggcga-tgcca-ccc-------cactgttc--gttcccatgctcacctctgacct-----cgccgggtc Opossum -agcag---cta-aag-------aatggttcatctttcccttcctccttctaacttccagccgcaggccc Zebrafish ====================================================================== X. tropicalis ====================================================================== Chicken ====================================================================== Mouse ctggacgtctg-ttgtga--ttgttcagaaagatctc---------------- Rat ctggacgtctt-ttctga--ctgttcagaaagatctc---------------- GCF_003668045 ctgggtgtctt-ttctga--ctgctcagaaaaatccc---------------- Beaver ccgagcgtctt-ttctgagcatggtcagaatgattct---------------- Squirrel ctgag-gtct--ttctgc--gtggtcagaacgattcc---------------- Guinea pig ctgagcatctt-ttctgt--ggtgacagaaggatgcc---------------- Rabbit ------gcctt-ttctgc--ataaccagga--gtccc---------------- Pika ------gactt-ttctgc----aatcagaatggcatc---------------- Human ctaagcgtcct-ttctgc--cttgtcagaaggattcc---------------- Chimp ctaagcgtcct-ttctgc--cttgtcagaaggattcc---------------- Bonobo ctaagcgtcct-ttctgc--cttgtcagaaggattcc---------------- Gorilla ctaagcgtcct-ttctgc--cttgtcagaaggattcc---------------- Rhesus ctaagcgtcct-ttctgc--gttgtcagaaggattcc---------------- Marmoset ctaagcgtcct-ttctgc--ctagtc---aggattcc---------------- Tarsier gtgagcgtctt-ttctgc--gtgatcagaacgattcc---------------- Bushbaby acgagcgtctt-ttctgc--gtagtcagaacgattct---------------- Tree shrew gagagcgtctt-ttctgc--gtagtcaaacgtactct---------------- Malayan flying lemur atgagcttctt-ttctgc--gtggtcagaaggattcc---------------- Pig atgagtgtctt-ttctgc--cggctaagaaccattcc---------------- Dolphin gtg--tgtctt-ttctgc--tcgctaagaacgattcc---------------- Cow gtgaatgtcttattctgc--t-gcttaggatgattcc---------------- Sheep g----tgtcttattctgc--t-gctaaggatgattcc---------------- Horse gtgagtgtctt-ttctgc--ttggtaagaaccgttcc---------------- Chinese pangolin atgagcgtctt-ttctgc--ttgctaagaacgattct---------------- Dog ttgagtgtctt-ttctgc--gtggtaagaacgattcc---------------- Hawaiian monk seal gcaagtgtctt-ttctgc--ttggtaagaaccattcc---------------- Hedgehog atgagtgtctt-ttctac--tggataacaactattcc---------------- Shrew ----gtgtctt-ttctac--ttggtaagaaccattcc---------------- Elephant gtcagcgtctt-tgctgc--gtggtcaggatgactcc---------------- Tenrec gtcagcatctt-ttctgc--gtggccagaaggactcc---------------- Opossum ccatacacatt-ttcttc--ctcccacgaccttttcccttgttgatagaccag Zebrafish ===================================================== X. tropicalis ===================================================== Chicken ===================================================== Inserts between block 13 and 14 in window B D Pig 1bp B D Dolphin 1bp B D Cow 1bp B D Sheep 1bp B D Horse 1bp B D Chinese pangolin 1bp B D Dog 1bp B D Hawaiian monk seal 1bp B D Hedgehog 23bp B D Shrew 1bp B D Elephant 1bp B D Tenrec 1bp Alignment block 14 of 313 in window, 56744884 - 56744926, 43 bps B D Mouse ggagtg-ttctgtaccat---acagtccg-gctttcccggg-------cgacttg--------------- B D Rat ccagtg-ctccgcaccgt---acagtctg-gctttcccagg-------agacttg--------------- GCF_003668045 ccggcacccccgcaccct---acgatccg-acttctccggg-------aagcttg--------------- Beaver ccgagc-cctcctacc------cggtcag-ccttccgcagg-------agacctg--------------- B D Squirrel cggagc-cctcctgct------cagtctg-gcttccgcagg-------agacctg--------------- B D Guinea pig cagagc-cctcctgtc------cagtctg-gctactttagg-------agacctg--------------- B D Rabbit cga--c-tctcctgct------cagtttg-ctttctgcggg-------agatcgt--------------- B D Pika tga--c-cctccggtt------cagttgg-ccttctgggag-------agatctg--------------- B D Human ccgagc-cctcctgcc------cagtccg-gcttccgcagg-------agacctg--------------- B D Chimp ccgagc-cctcctgcc------cagtccg-gcttccgcagg-------agacctg--------------- B D Bonobo ccgagc-cctcctgcc------cagtccg-gcttccgcagg-------agacctg--------------- B D Gorilla ccgagc-cctcctgcc------cagtccg-gcttccgcagg-------agacctg--------------- B D Rhesus ccgagc-cctcctgcc------cagtccg-gcttccgcagg-------agacctg--------------- B D Marmoset ccgagc-cctcctgcc------cagtccg-gcttcagcagg-------agacctg--------------- B D Tarsier ctgagc-cctcctgcc------cggtccg-gcttccgcagg-------agacctg--------------- B D Bushbaby ccga-c-cctcctgcc------cagtccg-gcttccgcagg-------agacctg--------------- B D Tree shrew ccgagc-cctcctgcc------cagtctt-gcttccgcagg-------agacccg--------------- B D Malayan flying lemur ccgagt-cctcctgct------cagtacg-gcttccgcagg-------agacctg--------------- B D Pig -tgagt-ccttctgtt------cagtcggagcttccgcagg-------agacctg--------------- B D Dolphin -cgagc-ccctgtgct------tagtcgg-gcttccgcagg-------agacccg--------------- B D Cow -cgcgc-ccttatgct------cagtcgg-gcttccgcagg-------agacccg--------------- B D Sheep -cgcgc-ccttacgct------cagtcgg-gcttccgcagg-------agacccg--------------- B D Horse -ccagc-cgtcctgct------cagtcgg-gcttccgcagg-------agacccc--------------- B D Chinese pangolin -cgaac-ccttctgct------cagtctg-gcttccgcagg-------agacctg--------------- B D Dog -cgagc-tctcccgca------cggttgg-gcttctgc----------agaccag--------------- B D Hawaiian monk seal -tgagc-cctcctgca------cagttgg-gcttccac----------agaccag--------------- B D Shrew -ccagt-acttatgct------cagtctg-gcttctgcggg-------agactca--------------- B D Elephant -ggaac-ccttttgcc------tagtctg-gcttccgtagg-------agacct---------------- B D Tenrec -ggagc-cctcttgct------cggcccg-acttccgctgg-------agacctg--------------- B D Opossum -ggagt-gtcttttctgtggggtagattg-gctcccagaggtccatgtcgatccgtgttttcttaggcga B D Hedgehog ====================================================================== B D Zebrafish ====================================================================== B D X. tropicalis ====================================================================== B D Chicken ====================================================================== Inserts between block 14 and 15 in window B D Shrew 3bp Alignment block 15 of 313 in window, 56744927 - 56745260, 334 bps B D Mouse agtttgttttcttttttattgta----------------------------------------------c B D Rat agtttgttttc-tttttattgca----------------------------------------------c GCF_003668045 agtttgttttc--ttttattgtg----------------------------------------------c Beaver agtttgttttc-tttttactgtg----------------------------------------------t B D Squirrel tgtttgttttc--ttttactgcg----------------------------------------------c B D Guinea pig gctttgttttc--ttttactgca----------------------------------------------t B D Rabbit agtttgttttc--ttttactgcg----------------------------------------------t B D Pika agtttgttttc--ttttactgcg----------------------------------------------t B D Human agtttgttttc--ttttactgag----------------------------------ttttttttttttt B D Chimp agtttgttttc--ttttactgag---------------------------------tttttttttttttt B D Bonobo agtttgttttc--ttttactgag----------------------------------ttttttttttttt B D Gorilla agtttgttttc--ttttactgag-------------------------------------tttttttttt B D Rhesus agtttgttttc--ttttactgagtttttttttgtttttttgtttttttggtttttttttttgtttttttt B D Marmoset agtttgttttc--ttttactgag--------------------------------ttgtttttttttttt B D Tarsier agtttgttttc--ttttactaag----------------------------------------------t B D Bushbaby agtttgttttc--ctttactaag----------------------------------------------t B D Tree shrew agtttgtttcc--ttttactgcg----------------------------------------------t B D Malayan flying lemur agtttgttttc--tttctttgcg----------------------------------------------t B D Pig agtttgttttc--ttttactgca----------------------------------------------c B D Dolphin aggttgttttc--ttttactgcg----------------------------------------------t B D Cow agtttgttttc--ttttactgcg----------------------------------------------t B D Sheep agtttgttttc--ttttactgcg----------------------------------------------t B D Horse cgtttgttttc--ttttactgcg----------------------------------------------t B D Chinese pangolin agtttgttttc--ttttactgtg----------------------------------------------- B D Dog agcttgttttc--ttttacttca----------------------------------------------t B D Hawaiian monk seal actttgttttc--ctttacttca----------------------------------------------t B D Hedgehog agtttgttttc--ttttactgag----------------------------------------------c B D Shrew ggtttgttttc--ttttactgcg----------------------------------------------c B D Elephant -gtttgttttc--ctttactgcg----------------------------------------------t B D Tenrec agtttgtttt---ctttactgcg------------------------------gttttcttttctttctt B D Opossum agtttgttttc--ttttactaaa----------------------------------------------c B D Zebrafish ====================================================================== B D X. tropicalis ====================================================================== B D Chicken ====================================================================== Mouse tg------------tt--------------------------aa----agataaaatttaaaagacatta Rat tg------------tt--------------------------aa----agataaaatttaaaagacatta GCF_003668045 tg------------tt--------------------------aa----aaataaaatctaaaagacatta Beaver tg------------tt--------------------------aa----aaaataaattaaaaaggcgtta Squirrel tg------------tt--------------------------aa----aaaataaat-aaaaaggcgtta Guinea pig ag------------tt--------------------------aa----aatata-----aaagagtgtta Rabbit tg------------tt------------------------aaaa----aaaaaaaaaaaaaaaggcgtta Pika tg------------tt--------------atttaaaagaagaa----gaagaagaaaaaggaggtgcta Human tt------------tt---------------------------------------------aaggcgtta Chimp tt------------tt---------------------------------------------aaggcgtta Bonobo tt------------tt---------------------------------------------aaggcgtta Gorilla tt------------tt---------------------------------------------aaggcgtta Rhesus tt------------tt---------------------------------------------aaggcgtta Marmoset tt------------tt---------------------------------------------ttggcgtta Tarsier tg------------ttaaa---aaaaa-----------------------aaaaaaaaaaaaaggcgtta Bushbaby tg------------ttaaa---aagggggc------ggtggggg----gtggggggagaaggaggcatta Tree shrew tg------------ttaaaaccaaaccaaaccaaaacaaaaata----aacaaacaaaaaaacctcctta Malayan flying lemur tg------------ttgaa---aaagaaaa--gaaaagaaaaca----aaagaaaagaaaaaaggcttta Pig tg------------tt----------------aaaacagaacag----aacaaaacaaaaaacagcgtta Dolphin tg------------tt----------------aaaacgggacaa----aacaaaaca-aaaacagcgtta Cow tg------------tt----------------aaaacagaataa----aacaaaacataaaacagcgtta Sheep tg------------tt----------------aaaacagaataa----aacaaaacacaaaacagcgtta Horse tg------------tt----------------aaaacaaaaca-------------------cggcgtta Chinese pangolin ta------------tt----------------ataacaacacaac-acaaca-caaacaaaccggtgtta Dog aa------------tt------------aaccaaaacaacacaacaacagcagcaaggaaactggcattg Hawaiian monk seal aa------------tt-----------------aaacaaaacaacaacaacagcaaagaaactggcatta Hedgehog ag------------tt----------------aaaacaaaacaa----aacaaaacaaaaa--ggcctcg Shrew tgtttttttttttttt----------------aaaaaaaaac-----------agcagtaa--tgtc--- Elephant tg------------tt-------------------------taa----aaaaaaaaaaaaaaaggcgtta Tenrec tc------------tt-------------------------t---------------taaaccggcatta Opossum tg------------tt--------------------------aa-------------------------a Zebrafish ====================================================================== X. tropicalis ====================================================================== Chicken ====================================================================== Mouse ggtt-c-tttcttggtataggg------ag---aaaaagaaa-gtt-aaaat----gtttt-attc-gc- Rat ggct-c-tttcttggtattggg------tg---aaaaagaaa-gtt-aaaat----gtttc-attc-cc- GCF_003668045 gctt-c-tttcttggtgtaagg------agaacaaaaagaaa-ttt-aaaat----gtttt-attc-ac- Beaver gctt-c-tgccttggta--ggg------ag----aaaagaaa-atc-aaact----gcttt-agga-gca Squirrel actt-c-tttcttggta--ggg------ag----aaaagaaa-gta-aaaat----gcggt-agac-ata Guinea pig actt-cttttcttggta--ggg------ta----aaaagaa---tc-aaagt----acttt-agac-ga- Rabbit acct-c-tttctgagta--ggg------ag----aaaagagt-a---aaaat----gctct-ccac-gca Pika ccgt-c-tttcttcgta--ggg------ag----aaaagaaa-g----------------t-ccat-gta Human actt-t-tttcttggta--ggg------ag----aaaagaaa-gtc-tgaat----gacct-agat-gca Chimp actt-t-tttcttggta--ggg------ag----aaaagaaa-gtc-tgaat----gacct-agat-gca Bonobo actt-t-tttcttggta--ggg------ag----aaaagaaa-gtc-tgaat----gacct-agat-gca Gorilla actt-t-tttcttggta--ggg------ag----aaaagaaa-gtc-taaat----gacct-agat-gca Rhesus actt-t-tttcttggta--ggg------ag----aaaagaaa-gtc-taaat----gacct-agat-gca Marmoset ac------ttcttggta--ggg------ag----aaaataaa-gtc-taact----gtcct-atat-gca Tarsier actt-c-tttcttggta--gaa------ag----caaa-------------t----gccctaagag-gca Bushbaby acttct-tttcttggta-gggg------aa----aaaagaaa-gtc-taaat----gccct-tgat-aaa Tree shrew actt-c-tttcttgtta--gag------ag----aaaaaaaatgtc-aaaat----gccct-acac-gca Malayan flying lemur actt-c-tttcttggta--gggaacagaaa----aaaaaaaaagtg-aaaat----gccct-agac-gca Pig actt-a-tttctttgta--ggg------ag----aaaataaa-gtc-aaatt----gccct-agat-gca Dolphin actt-c-ttcctcggta--ggg------ag----aaaagaaa-gtaaaaaat----gccct-agac-gca Cow actt-c-tttctcagta--ggg------ag----aaaacaaa-gtcaaaaat----gccct-agat---- Sheep actt-c-tttctcagta--ggg------ag----aaaacaaa-gccaaaaat----gccct-agac-gca Horse actt-c-tttctcggta--ggg------aa----aaa--aaa-gtc-aaact----gccct-agac-gct Chinese pangolin actt-c-tttctaga-g--gag------aa----aag--aaa-atc-agatctaaattcct-ggac-aca Dog actt-c-tttctcggta--ggg------gg----aga--aaa-gta-aaaat----accct-agac-aca Hawaiian monk seal actt-c-tttctcggta--ggg------gg----a-a--aaa-gcc-aaaat----gtctt-agac-aca Hedgehog actt-ctttctctggga--gtg------ag----aaaagaaa-gta-aaaat---gccccc-agatggtg Shrew -------ttcctgggta--ggg------ag----aagagaaa-gta-aaaac----ccctt-agac-gca Elephant actt-c-tttcttgatg--ggg------ag----aa---aaa-gtc-aaaag----gcctt-gaac-gca Tenrec acgt-c-tttcttggtt--ggg------ag----aaaagaaa-atc-agaat----gcctt-gaac-gga Opossum acat-c-ttc---------aag------tc----aaagtgac-ctc--aaat----------aata-gca Zebrafish ====================================================================== X. tropicalis ====================================================================== Chicken ====================================================================== Mouse -------------------------------------cttattgcct----aactgctc--ag-tggaaa Rat -------------------------------------ttaacttctt---caattgctc--ag-gggaag GCF_003668045 -------------------------------------tcaatttactgcccagtttttc--ag-tgtaag Beaver g----aacttaaataatgcagagtt----agagagagcctatctttt---gaaattttc--ag-tataaa Squirrel g----aatttaaataatgcagagat----ag------cctaccttct---taatttctc--ag-cataaa Guinea pig -----------ggaggagataagat----ag------gctaccttct---taatttctc--ag-tgtaaa Rabbit t----attgtaaatacttcaga---------------gataccttct---taatgtttc--agccgtgaa Pika g----aatcgaactaattcgga---------------gataacttgc---taatgtctcatagccctaat Human g----aatttaaataatgtgtagat----ag------tccactttct---taatttctc--ag-cctaaa Chimp g----aatttaaataatgtgtagat----ag------tccactttgt---taatttctc--ag-cctaaa Bonobo g----aatttaaataatgtgtagat----ag------tccactttgt---taatttctc--ag-cctaaa Gorilla g----aatttaaataatgtgtagat----ag------tccactttct---taatttctc--ag-cctaaa Rhesus g----aatttaaataatgcgtagat----ag------tccactttct---taatttctc--ag-cctgaa Marmoset g----aatttaaataatgtgtagat----ag------tccactttct---taacatatc--ag-cctaaa Tarsier g----aatttaaatgat---tacat----ag------tcgactttct---tcatttctc--aa-cccaag Bushbaby t----atttaaaataatgagc--at----ag------tctattttct---taatttctc--ag-cctaaa Tree shrew gacaaaatctaaataatgtagagat----ag------cctatcttct---tagtttctc--ag-tttgaa Malayan flying lemur g----aatttaagtagtgcggagatacagag------cctaccttct---taattcctc--gg-cctaga Pig g----aaattaaataatgcggagataaagag------cctacctcct---taatttctc--tg-ccaaaa Dolphin g----aatttaaataatgcagagataaagag------cctaccttct---taatttctc--ag-ccagaa Cow --------ttaaataatacagagataaagag------cctaccttct---taatttctc--ag-ccaaga Sheep g----aaattaaataatgcagagataaagag------cctatcttct---taatttctc--aa-ccaaaa Horse g----aatttaaataaggcagagatacagag------cctaccttc----taatttctc--ag-ccaaaa Chinese pangolin g---------aaataatgcagagataaagag------cctactttct---taatttctc--ca-gcaaaa Dog g----aatctaaataatatagaaat-aagag------cctaccgttt---taatttctt--ag-ccgaaa Hawaiian monk seal g----aatttaaagaatacagagat-cagag------cccaccgttt---taatttctt--ag-ccgaaa Hedgehog g----aatcaatataatgaagagataccaag------tctccccctt---gaattcctc--tg-tcagaa Shrew g----aatttaagtaatgaagagataaagag------tccatcttct---taatcgcct--ag-cca-aa Elephant g----aattcaagtaatgc--agatagagag------cctacctccc---taacttctc--gg-tccaaa Tenrec g----aattcaaataatgc--agatagagag------cctatctcct---t-gcttgtc--gt-ttta-- Opossum a----ggactgaggagtgta---------ag------tccttctttt---ctaactctc--tg-tcca-- Zebrafish ====================================================================== X. tropicalis ====================================================================== Chicken ====================================================================== Mouse gttt-aagacaggcaga-g---g-----aaa-attt-aaataggaaag-----------------aga-a Rat gttt-aaga----caga-g---g-----aaa------aattagaaaag-----------------agg-a GCF_003668045 gttt-aagacgggcaga-g---g-----aaaaattt-aaataggaaag-----------------aggaa Beaver gttt-aaaaagtacaga-g---g-----aaa-aatt-aaatagcatag-----------------agg-g Squirrel gttt-aaaaagtgcaga-g---gggggaaaa-tact-aaataggaaag-----------------ggg-g Guinea pig gttt-aaaaactgaagg-g---g-----aaa--------atagacaaa-----------------aga-c Rabbit gttt-aaaaagcgcaga-g---g-----aaa-aatt-aaataa---ag-----------------ggg-g Pika gttt-caaaagcacaga-g---g-----aga-aatt-aaatag---gg-----------------ggg-g Human gttt-taaaagtgtaga-g---g-----aaa-aatt-aaataggaaag-----------------ggg-g Chimp gttt-taaaagtgtaga-g---g-----aaa-aatt-aaataggaaag-----------------ggg-g Bonobo gttt-taaaagtgtaga-g---g-----aaa-aatt-aaataggaaag-----------------ggg-g Gorilla gttt-taaaagtgtaga-g---g-----aaa-aatt-aaataggaaag-----------------ggg-g Rhesus gttt-taaaagtgtgga-g---g-----aaa-aatt-aaatgggaaag-----------------ggg-g Marmoset gttt-taaaaatgtagg-g---g-----gaa-aatt-aaataggaaag-----------------agg-a Tarsier gttt-taaaagcgcaga-g---g-----aaa-aatt-aaataggaaag------------------gg-a Bushbaby gttt-ataaagtgcagg-g---g-----aaa-aatt-aaataggaaag-----------------gag-g Tree shrew gttt-aaaaatcacaaa-t---g-----aaa-aaat-gaaatagagtg-----------------ggg-g Malayan flying lemur gttt-aaaaagtgcaga-g---g-----aaa-aatt-gaataggaaaa-----------------gag-g Pig gctt-aaaatgagcaga-g---g-----aac-aatt-aaatagaaaaa-----------------ggg-g Dolphin gttt-aaaaagagcaga-g---g-----aaa-aatt-aaataggaaaa-----------------ggg-g Cow cttt-aaaaagagcggg-gg--g-----aaa-aatt-aaataggaaaa-----------------ggg-g Sheep cttt-aaaaagagcggg-gggtg-----gga-aatt-aaataggaaaa-----------------ggg-g Horse ggct-aaaaagcacaga-g---g-----aaa-aatg-aaatagagacg-----------------ggg-g Chinese pangolin gtttaaaaaagtgcaga-g---g-----aaa-aaat-aaatggaaaag-----------------ggg-g Dog gttt-aaaaagtgcagg-g---g-----gga-aatt-aagtaggagaaggtggtggtggtggtggggg-g Hawaiian monk seal gttt-aaaaagtgcagg-g---g-----aaa-aatt-aagtagggaaa-----------------agg-g Hedgehog ggtt-taaaattgaagagg---a-----aaa-aact-aaataggagaa---------------gcagt-g Shrew agtt-taaaagtgcaga-g---a-----aaa-aatt-aaataggaaag---------------ttggg-g Elephant gatt-taaaaagccaga-g---g-----aaa-aatt-aaataggaaag-----------------gga-g Tenrec -------------caac-g---g-----aaa-gatt-gaataggaaag-----------------gga-g Opossum -tat-gaaaagaccaga-g---g-----gac-aattccattttgggtg-----------------cgg-t Zebrafish ====================================================================== X. tropicalis ====================================================================== Chicken ====================================================================== Mouse ag---atatttcctgtgctaatttcccgctttttgatgtt-cccaccaca-ctggcac-agttacctttt Rat aa---atatttc-----ctagttttttttttttca--gtt-cccaccacc-ttggtgc-aattacctttt GCF_003668045 aa---atatttcctgtaaccatttcttggtttttga-ctt-tccacggca-tccgcac-aatgacctttt Beaver aa---atcgttcctttaattatttcctgccttttgcagtt-gccagcaca-ttggcac-aattacctttt Squirrel aa---atagttcctttaattatttcctgccttttgctgtt-gccaccaca-ttggcac-aattacctttt Guinea pig aa---atggttcttctaattatttcctgctttttgcaatt-gccaacaca-ttggcac-aattatgtttt Rabbit aa---atagttcctttaattatttcctgcctttctcgatt-gccaacaca-ttggcac-aattatctttt Pika gg---ataactcctttaattatttcctgcctttctcg-tt-gccaccaca-ttggcac-aattatctttt Human aa---atagtttctttaattacttcctgcctttcttggtt-gccaccaca-ttggcac-aattatctttt Chimp aa---atagtttctttaattacttcctgcctttcttggtt-gccaccaca-ttggcac-aattatctttt Bonobo aa---atagtttctttaattacttcctgcctttcttggtt-gccaccaca-ttggcac-aattatctttt Gorilla aa---atagtttctttaattacttcctgcctttcttggtt-gccaccaca-ttggcac-aattatctttt Rhesus aa---atagtttctttaattacttcctgcctttcttggtt-gccaccaca-ttggcac-aattatctttt Marmoset aa---atagttcttttaattacttcctgcctttcttggtt-gccaccaca-ttggcac-aattatctttt Tarsier aa---atagttctggtaattatttcctgcctttcttggtt-gccaccaca-ttggcac-aattatc---c Bushbaby aa---atagttcctttaattatttcctggctttcttggtt-gcca-caca-ttggcac-aattatctttt Tree shrew ag---ttaattcctttaattatttcccgagtttcagggtt-atcaccaca-ctggcac-aatgatctttt Malayan flying lemur aa---atagttcctttaattatttcctgcctttcttggtt-gccaccaca-ttggcat-aattatctttt Pig aa---atagtttctttaatcattttctgtctttctcggtt-gccaccaca-ttggcac-aattatctttt Dolphin aa---atagttcctttaattgtttcctgcctttctcggtt-gccaccaca-ttggcac-aattatctttt Cow aa---atagttcatttaattatttcctgcctttctcagtc-gccaccaca-ttggcac-aattatctttt Sheep aa---atagttcatttaattatttcctgccttcctcagtt-gccaccaca-ttggcac-aattatctttt Horse aa---atagttcttttaattatttcctgcctttctcggtt-gccaccacg-ctggcac-aattatctttt Chinese pangolin gagggatagtgcctttaattatttcctgcgtttctgggtt-gccaccaca-ttggcac-aattatctttt Dog ggggaagagttcctttaattatttcctgcctttctctgtt-gccaccaca-ttggtac-aattatctttt Hawaiian monk seal ggggaatagttcctttaattgtttcctgcctttttctgtt-gccaccaca-ttggcac-aattatctttt Hedgehog aa---atagttcttttaatta-------------taatcc-accaccacc-ttggcacaaagtatctttt Shrew ga---atagttcctttaattatttcctgcctttctcagct-gccaccaca-ttggcac-aattatctttt Elephant aa--aatagcttctttaattatttcttgccttttttggtttgccaccaca-ttggcac-aattatctctt Tenrec aa--aatagtttctttaattatttcctgcctttcttggtt-------acacttatcac-aattatcgctt Opossum ag---ata---cctttaaatgttttctccttt-----att-aacaccaca-tagacac-atttgcctctt Zebrafish ====================================================================== X. tropicalis ====================================================================== Chicken ====================================================================== Mouse aa--agtaatt-aagcagtg----cac-ga-tttccca--------------tcttcttgtcct-ctgac Rat aa--agtaattaaaacagtg----cac-ga-ttcccca--------------tcttcttgtctt-ctgac GCF_003668045 aa--agtaattaaagcagtg----ctt-ga-tttctca--------------tctccgtgtttt-ctgat Beaver ta--agtaattaaagcagag----ccctga-tttctca--------------tcttcttgtttt-ctgac Squirrel ta--agcaattaaagcaggg----ccctga-tttctta--------------tcttcttgtttt-ttgac Guinea pig tc--gataattaaagcagag----ccttga-tttctca--------------tattcttgtttt-ctgcc Rabbit ta--agtaattaaagcaggg----gcctga-tttctca--------------tcttcttggttt-ctgat Pika ta--agcaattaaagca-gg----ccctga-ttcctcagctccttgctcctgtctcctggtttt-cggat Human ta--agtaattaaagcaggg----ctctga-tttctca--------------tcttcttgtttt-ctgac Chimp ta--agtaattaaagcaggg----ctctga-tttctca--------------tcttcttgtttt-ctgac Bonobo ta--agtaattaaagcaggg----ctctga-tttctca--------------tcttcttgtttt-ctgac Gorilla ta--agtaattaaagcaggg----ctctga-tttctca--------------tcttcttgtttt-ctgac Rhesus ta--agtaactaaagcaggg----ctctga-tttctca--------------tcttcttgtttt-ctgac Marmoset ta--agtaattaaagtagag----ctctga-tttctca--------------tcttcttgtttt-ctgac Tarsier ta--agtaattaaagcagga----ttctga-tttctca--------------tcttcttgtttt-ctgac Bushbaby ta--agtaattaaggcaggg----ttctga-tttctca--------------tcttcttgtttt-ctgac Tree shrew ------taatgaaagcagga----ccccga-tttctca--------------tctttttgtttt-ctgac Malayan flying lemur aa--agtaattaaagcagga----ccctga-tttctca--------------tcttcttgtttt-ctgac Pig aa--gataattaaagcataa----tcctta-tttgtca--------------tcttcttttttttttgac Dolphin ta--aataattaaagcatag----ccctga-tttctca--------------tcttcttgcttt-ctgac Cow ta--aataattaac-catag----ccctga-tttctca--------------tcttcttgtttt-ctgac Sheep ta--aataattaac-catag----ccctga-tttctca--------------tcttcttgtttt-----c Horse ta--agtaattaaagcagaa----cgctga-tttctca--------------tcttcttgtttt-ctgac Chinese pangolin ca--agtaattaaagcagag----cactga-tttctca--------------tcttcttgtttt-ctgac Dog ta--agtaattaaatcagag----ccctga-tttctca--------------tcttcttggatg-ctgac Hawaiian monk seal ta--agtaattaaagcagag----ccctga-tttctca--------------tcttcttgtttg-ctgcc Hedgehog ta--cacaattaagccagag----ttctga-tttctca--------------tcttcttgtttt-----c Shrew ta--agtaattaaagcagag----ccctga-tttctca--------------tcatcttgtttt-----c Elephant ta--agtaattgaagtaggtaggcccttga-tttctca-----------------tcttgtttt-----c Tenrec tgttagtaattaaaatagtg----ccctga-tttctca--------------tcttcttgtttt-----c Opossum gc--agtaactaaacaagag----gcttaactttttca--------------ttcccttgttgt-cgata Zebrafish ====================================================================== X. tropicalis ====================================================================== Chicken ====================================================================== Mouse t---gcaaattgacaaga----------------g-caatgtt-ctgggttatttgg---------aact Rat tgcggcgaattgacaaga----------------g-taaagct-ctgggttatttgg---------aact GCF_003668045 t---gggaattgacaaga----------------g-taaagtt-ctgagttatttgg---------aact Beaver t-----gaatttacaaga----------------g-ctcagtt-ttgtcttatttgg---------agct Squirrel c---atgaatttacagga----------------a-tccagtt-ttgtcttatttgg---------agct Guinea pig t---gtgaatttacaaga----------------g-c-cagtt-ctgtcttatttgg---------agct Rabbit t---gtgaatttccaaga----------------g-cccagtt-ctgtcttactctg---------agct Pika g---gtggatttccaagt----------------g-ctccact-ttgccttgctcggcggccgcctagcc Human t---gcaagtttacaaga----------------g-cccagtt-ttgtcttatttgg---------agct Chimp t---gcaagtttacaaga----------------g-cccagtt-ttgtcttatttgg---------agct Bonobo t---gcaagtttacaaga----------------g-cccagtt-ttgtcttatttgg---------agct Gorilla t---gcaagtttacaaga----------------g-cccagtt-ttgtcttatttgg---------agct Rhesus t---gcaagtttacaaga----------------c-cccagtt-ttgtcttatttgg---------agct Marmoset t---gcaagtttacaaga----------------g-cccagtt-ttgtcttatttgg---------agct Tarsier t---gcgaatttacaagc----------------g-ctcagtt-ttgtcttcttcgg---------agcg Bushbaby t---gcaaatttacaaga----------------gccccagtt-ttatcttattc-c---------agct Tree shrew t---gtgaatttagaaga----------------g-cccagtt-ttgtcctaattgg---------agct Malayan flying lemur t---gtgaatttacaaga----------------g-cccagtt-ttgttttattcgg---------agct Pig -----tgaatttacaaga---tcctta--taagag-ctcagtt-ttgtcttatttgg---------agct Dolphin t---gtgactttacaaga---tccttc--taagag-cctggtt-ttgtcttgttcgg---------agct Cow t---gtgactttacagga---tccttc--taaggg-cccagtt-ttgtcttatttgg---------agct Sheep t---gtgactttacagga---tccttc--taaggg-cccagtt-ttgtcttatttgg---------agct Horse t---gcgaatttacaaga---tccttc--taagag-atcagtt-ttgtcttattctg---------aact Chinese pangolin t---gtgagtttacaaga---tccttt--taaaag-ctcagtt-ttgtcttatatgg---------agct Dog -----cgagcttacaagactcttcttc--taggag-ctcagtt-ttgtcttattcag---------agtt Hawaiian monk seal t---gtgaatttacaaga---ttcttc--gaggag-ctcagtt-ttgtcttattcgg---------agct Hedgehog c---atgaatttacaaga---tccttc--taagag-cttggtt-ttgccttattggc---------agcc Shrew t---gtgacttaagatga---tctttc--taaaag-cttactt-ttgtcatattcaa---------agct Elephant t---atgaatttacaaga---tccttc--taacag-cccagtt-ttgtcttatttgg---------agct Tenrec t---gtgaatttacaaga---cccttctataagag-cccagat-ttgtagtatttcg---------agcc Opossum a---tagaatttaaagga---ctcttt--taaaaa-tgtaactcttaacctcttcag---------agcc Zebrafish ====================================================================== X. tropicalis ====================================================================== Chicken ====================================================================== Mouse ggtt-----------------------ggaacctta-gtt Rat agtt-----------------------ggagactcg-gtt GCF_003668045 agtt-----------------------ggagcctta-ggt Beaver agtt-----------------------ggagcttta-gtt Squirrel agtt-----------------------ggggcttta-gtt Guinea pig cact-----------------------agagcttag-gtt Rabbit actt-----------------------gcagcttta-ctt Pika actgga--------------------agcagctttt-aag Human actt-----------------------ggagccata-gtt Chimp actt-----------------------ggagccata-gtt Bonobo actt-----------------------ggagccata-gtt Gorilla actt-----------------------ggagccata-gtt Rhesus actt-----------------------ggagccgta-gtt Marmoset actt-----------------------ggagccgta-gtt Tarsier agtc-----------------------agagcttta-gtt Bushbaby agtt-----------------------gaagctctacgtt Tree shrew ggtt-----------------------gcagcttta-gtt Malayan flying lemur agtt-----------------------ggagcttta-gtt Pig ggtt------------------------gagcttta-gtt Dolphin ggtt-----------------------ggagcttta-ttt Cow ggct-----------------------ggagtttta-gtt Sheep ggct-----------------------ggagcttta-gtt Horse ggtt-----------------------ggagcttta-gct Chinese pangolin ggtt-----------------------ggagcttta-gtt Dog ggtt-----------------------ggagcttta-gtt Hawaiian monk seal ggtt-----------------------ggagcttta-gtt Hedgehog a------------------------------------gtt Shrew ggtt-----------------------aaacatttc-gtt Elephant ggtt-----------------------ggagcttta-gtt Tenrec g------------------------------------gcg Opossum agccaggttagggtgaacagaacactggaagctgca-ttc Zebrafish ======================================== X. tropicalis ======================================== Chicken ======================================== Alignment block 16 of 313 in window, 56745261 - 56745405, 145 bps B D Mouse ggagacg---ttgcccttgatttataggataagctgacctcactgacatttaaaggaagcccctgttcat B D Rat ggagacg---ttgcccttgatttataggataaactgacctcattgacatttaaaggaagcccctgttcgt GCF_003668045 ggagatg---ctgcccttgatttataggataaactgacctcactgacattt-aaggaaggccctgtccgt Beaver ggagaga-gttcgcccttgatttataggataaactgacctcactgacatttaaaggaagcccctgttcat B D Squirrel ggagaga-ctttgcccttgatttataggataaactgacctcactgacatttaaaggaagcccctgttcat B D Guinea pig ggagaga-gtttgcccttgatttataggataaactgacctcactgacatttaaaggaagcccctgttcat B D Rabbit ggagaga-gttcgcccttgatttataggataaactgaccccactgacatttggaggaagcccctgttcat B D Pika ggggaga-gttggcccttgatttataggataaactgacctccctgacatttagaggaaacccctgtgcct B D Human ggagaga-gtttgcccttgatttataggataaactgacctcactgacatttaaaggaagcccctgttcat B D Chimp ggagaga-gtttgcccttgatttataggataaactgacctcactgacatttaaaggaagcccctgttcat B D Bonobo ggagaga-gtttgcccttgatttataggataaactgacctcactgacatttaaaggaagcccctgttcat B D Gorilla ggagaga-gtttgcccttgatttataggataaactgacctcactgacatttaaaggaagcccctgttcat B D Rhesus ggagaga-gtttgcccttgatttataggataaactgacctcactgacatttaaaggaagcccctgttcat B D Marmoset g--gaga-gtttgcccttgatttataggataaactgacctcactgacatttaaaggaagcccctgttcat B D Tarsier ggagaga-gtttgcccttgatttataggataaactgacctcactgacatttaaaggaagcccctgttcat B D Bushbaby ggagaga-gtttgcccttgatttataggataaactgaccccagtgacatttaaaggaagcccctgttcat B D Tree shrew ggaggga-gtatgcccttgatttataggataaactgacctcactgacatttaaaggaagcccctgttcat B D Malayan flying lemur ggagaga-gtttgcccttgatttataggataaactgacctcactgacatttaaaggaagcccctgttcat B D Pig g--gcga-gtttgcccttgatttataggataaactgacctcactgacatttagaggaagcccctgttcat B D Dolphin gaagaga-gtttgcccttgatttataggataaactgacctcactgacacttaaaggaagccccggttcat B D Cow ggagaga-gtttgcccttgatttataggataaactgacctcactgacatttaaaggaagcccctgttcat B D Sheep ggagaga-gtttgcccttgatttataggataaactgacctcactgacatttaaaggaagcccctgttcat B D Horse ggagaga-gtttgcccttgatttataggataaactgacctcactgacatttaaaggaaggccctgcgcat B D Chinese pangolin ggagaga-gtttgcccttgatttataggataaactgacctcactgacatttaaaggaagcccctgttcat B D Dog ggagaga-gtttgcccttgatttataggataaactgacctcactgacatttaaaggaagcccctgttcat B D Hawaiian monk seal ggagaga-gtttgcccttgatttataggataaactgacctcactgacatttaaaggaagcccctgttcat B D Hedgehog ggagaga-ttttgcccttgatttataggataaactgacctcactgacatttaaaggaagcccctgtgcat B D Shrew ggagagc-gtttgtccttgatttataggataaactgacctcactgacatgtaaaggaagcccctgttcat B D Elephant ggagaga-atttgcccttgatttataggataaactgacctcactgacatttaaaggaagctcctgttcat B D Tenrec ggagagt-gtttgcccttgatttataggctaacctgacctcactgacatttaaaggaagcccctgttcat B D Opossum tgagggttgtttgcccttgatttataggataaactgacctcgctgacatttaaaggaaggtcctattcat B D Chicken -ggggcc-gttcgcccttgatttataggataaactgacctctctgacacggaaaggaagcccctattcat B D Zebrafish ====================================================================== B D X. tropicalis ====================================================================== Mouse gggaaagtgtgagatcagcagaaatgggggctcacagggggaatctcaatttcttaagataacttcaggc Rat gggaaagtgtgagatcagcagaaatgggggctcacaggggg-atctcaatttcttaagataactttagac GCF_003668045 gggaacgtgtgagatcagcagaaat-ggggctcacaggggg-atctcagtttcttaagataacttcaggc Beaver gggaaagtgtgagatcagca-aaatgggggctcacaggggg-atctcaatttcttaagataacttaaggc Squirrel gggaaagtgtgagatcagcagaaatggaagctcacaggggg-atctcaatttcttaagataacttcaggc Guinea pig gggaaagtgtgagatcagcagaaat-gaggctcacaggggg-atctcaatttcttaagataacttcaggc Rabbit gggaaagtgtgagatcagcagaaatgggggcttgcagggag-atctcaatttcttaagataacttcaggc Pika gggaaagtgtgagatcagcagaaatgggggctcgcaggggg-atctcggtttcttaacacaacttcaggc Human gggaaagtgtgagatcagcagaaatgggggctcacaggggg-atctcaatttcttaagataacttcaagc Chimp gggaaagtgtgagatcagcagaaatgggggctcacaggggg-atctcaatttcttaagataacttcaggc Bonobo gggaaagtgtgagatcagcagaaatgggggctcacaggggg-atctcaatttcttaagataacttcaggc Gorilla gggaaagtgtgagatcagcagaaatgggggctcacaggggg-atctcaatttcttaagataacttcaggc Rhesus gggaaagtgtgagatcagcagaaatgggggctcacaggggg-atctcaatttcttaagataacttcaggc Marmoset gggaaagtgtgagatcagcagaaatgggggctcacaggggg-atctcaatttcttaagataacttcaggc Tarsier gggaaagtgtgagatcagcagaaatgggggctcacagggga-atctcaatttcttaagataacttcaggc Bushbaby gggaaagtgtgagatcagcagaaatgggggctcacaggggg-atctcaatttcttaagataacttcaggc Tree shrew gggaaagtgtgagatcagcagaaatgggggctcacaggggg-atctcaatttcttaagataacttcaggc Malayan flying lemur gggaaagtgtgagatcagcagaaatggggactcacagggag-atctcaatttcttaagataacttcaggc Pig gggaaagtgtgagatcagcagaaatgggggcacgcaggggg-atctcaatttcttaagataacttcaggc Dolphin gggaaagtgtgagatcagcagaaatgggggcgcgcaggggg-atctcaatttcttaagataacttcaggc Cow gggaaagtgtgagatcagcagaaatgggggcgcgcaggggg-atctcaatttcttaagataacttcaggc Sheep gggaaagtgtgagatcagcagaaatgggggctcgaaggggg-atctcaatttcttaagataacttcaggc Horse gggaaagtgtgagatcagcagaaaagggggctcgcaggggg-atctcaatttcttaagataacttcaggc Chinese pangolin gggaaagtgtgagatcagcagaaatgggggctcgtaggggg-atctcaatttcttaagataacttgagga Dog gggaaagtgtgagatcagcagaaatgggggctcacaggggg-atctcaatttcttaagataactacaggc Hawaiian monk seal gggaaagtgtgagatcagcagaaatgggggctcacaggggg-atctcaatttcttaagataacttcaggc Hedgehog gggaaagtgtacgatcagcagaattgggggctcgcaggggg-atctcaatttcttaagataacttcagac Shrew gggaaagtgtgagatcagcagaaatgggggctcaca-gggg-atctcaatttc-taagataactttaggc Elephant gggaaagtgtgagatcagcagaaatgggggctcacaggggg-atctcaatttcttaagataacttcaggc Tenrec gggaaagtgtgagatcagcagaaatgggggctcacagggga-atctcaatttcttaagataactttaggc Opossum gggaaagtgtgagatctgcaggaattggggctctctgagag-atctcagtttcttaagtcatctgctggc Chicken gggaaagtgtgagatcagcagaaaagggcactcaccgagtg-ggctcaatttctcaagccagccccatgt Zebrafish ====================================================================== X. tropicalis ====================================================================== Mouse ttatgccc Rat ttatgccc GCF_003668045 ttgtgccc Beaver ttgtgccc Squirrel ttgtgccc Guinea pig ttgtgccc Rabbit ttgtgccc Pika ttgtgtgt Human ttgtgccc Chimp ttgtgccc Bonobo ttgtgccc Gorilla ttgtgccc Rhesus ttgtgccc Marmoset ttgtgccc Tarsier ttgcgccc Bushbaby ttgtgccc Tree shrew atgtgccc Malayan flying lemur ttgtgccc Pig ttgtgccc Dolphin ttgtgccc Cow ttgtgccc Sheep ttgtgccc Horse ttgtgccc Chinese pangolin ttgtgccc Dog ttgtgccc Hawaiian monk seal ttgtgccc Hedgehog ttgtgccc Shrew ttgtgccc Elephant ttgtgccc Tenrec ttgtgccc Opossum tgatgccc Chicken tggtgccc Zebrafish ======== X. tropicalis ======== Inserts between block 16 and 17 in window B D Chicken 571bp Alignment block 17 of 313 in window, 56745406 - 56745587, 182 bps B D Mouse accgactgccttttgtctgggactgcaa-agacca-gca------ggcagttgggaatc---------ag B D Rat accgattgccttttgtctgggacggcag-caaata-gcgtcagacagtagttgtgaatc---------ag GCF_003668045 accgactgccttttgtctgggaaggcaa-aggcca-tca------ggcc----tgaacc---------ag Beaver accgactg-cttttgtctgggaaggcaa-agagag-tca------ggcagttctggact--------aaa B D Squirrel accgagtgccttttgtctggaaaggcaa-agaac--tca------ggcagttctggacc---------ca B D Guinea pig accgactgccttttgtctgggaaggcag-aaaagagtca------ggcagttttgtacc---------aa B D Rabbit accgagtgccttttgtctgggaaggcaa-ggagag-aca------ggcagttctggacc--------taa B D Pika accagctgcattttgtctgggagggcaatggggag-atg------aggggttttggacc--------caa B D Human accgactgccttttgtctgggaaggcaa-agacag-aca------ggcagttctggacc--------aaa B D Chimp accgactgccttttgtctgggaaggcaa-agacag-aca------ggcagttctggacc--------aaa B D Bonobo accgactgccttttgtctgggaaggcaa-agacag-aca------ggcagttctggacc--------aaa B D Gorilla accgactgccttttgtctgggaaggcaa-agacag-aca------ggcagttctggacc--------aaa B D Rhesus accgactgccttttgtctgtgaaggcaa-agacag-aca------ggcagttctggacc--------aaa B D Marmoset actgactgccttttgtctgggaaggcaa-aaacag-aca------ggcagttttgaacc--------aaa B D Tarsier accgactgccttttgtctgggaaggcaa-agagag-aca------ggcagctctggacc--------caa B D Bushbaby accgactgccttttgtctggaaaggcaa-agagag-aca------ggcagtaatggacc--------aaa B D Tree shrew accgactgccttttgtctgggaaggc---agagag-aca------ggcagttttagacc--------aaa B D Malayan flying lemur accgactgccttttgtttgggaaggtaa-agagag-aca------ggcagttctggatc--------aaa B D Pig accaattgccttttgtctgggaaggcaa-ggagag-att------ggcaattctgggcc--------aag B D Dolphin accgattgccttttgtctgggaaggcaa-gaagag-act------ggcagttctgggcc--------aaa B D Cow accgattgccttttgtctgggaaggcaa-ggaaag-act------ggcagttctgggcc--------aaa B D Sheep accgattgccttttgtctgggaaggcaa-ggaaag-act------ggcagttctgggcc--------aaa B D Horse accgattgccttttgtctgggaaggcaa-agagag-act------ggcagttcagcacc--------aaa B D Chinese pangolin accgattgccttctgactgaaaaggc-----agag-act------ggcagttctgggcc--------aaa B D Dog accgattgccttttgtctgggaaggcaa-agagag-att------ggcagttctttgcc--------aaa B D Hawaiian monk seal accaattgccttttgtctgggaaggcaa-agagag-act------ggcagttctttgcc--------aaa B D Hedgehog agcaactgtcttttgtctggcaaggcaa-agagaa-act------ggaagttgggggggggggaggcaaa B D Shrew accgactgtcttatgtctggaaaggcaa-aaagag-aca------ggcagttctgggca--------aaa B D Elephant accaactgccttttgtctgggaaggtaa---agag-ata------ggcagttctgggac--------aaa B D Tenrec accgactaccttttgtctgggaaagcaa-ctagag-aca------ggcacttctgggcc--------caa B D Opossum atcgactacattttgctacggaagacga-agagat-ata------gaaagccctgagct--------gga B D Zebrafish ====================================================================== B D X. tropicalis ====================================================================== B D Chicken ====================================================================== Mouse tg--atggctttctggtac-aaaaataggagc-ac--aatc-tacttc-tttgga--------gggggag Rat tc--atggcttcctggtac-aaaaatgggaac-ac--aatc-tttgtc-tttgga--------gggggag GCF_003668045 cc--atggcttcctgctgc-aaaaatgagcctggc--aatc-tacttg-tttgga---------ggggag Beaver ac--acaacttcctggtgc-aaaaatgggaac-ac--aa-c-tatttc-tttgga-------aggggtag Squirrel a---acagtctcttggtgcaaaaaataggagc-ac--aatc-tatttc-tttgga-------agggggag Guinea pig a---acagtttcctggtgcaaaaaataggaac-ac--aa-----tttc-ttggga--------ggggggg Rabbit ac--accccatcctggtgc-aaaaatgggaac-ac--agtc-taatc--tttgag--------gggggag Pika ac--accctttcctggtac-aaaactgggagc-ccggagtt-tagtttgtttagt--------gtgggag Human ac--acagtttcctggtgc---aaatggg-ac-tc--aatc-taattc-ttgggggtggtagaggaggag Chimp ac--acagtttcctggtgc---aaatggg-ac-tc--aatc-taattc-ttgggggtggtagaggaggag Bonobo ac--acagtttcctggtgc---aaatggg-ac-tc--aatc-taattc-ttgggggtggtagaggaggag Gorilla ac--acagtttcctggtgc---aaatggg-ac-tc--aatc-taattc-ttgggggtggtagaggaggag Rhesus ac--acagtttcctggtgc---aaatggg-ac-tc--aatc-caattc-ttgggggtggtagaggaggaa Marmoset ac--acagtttcctggtgc---aaatggg-ac-tc--aatc-taattc-ttgagggtggtagaggaggag Tarsier ac--acagattcctggtgc---aaatagg-aa-tc--catt-taattc-ttggagg-------gggggga Bushbaby ac--acagtttcttggtgc---aaatggg-aa-tc--aatc-tagttc-tttggggtt-----gggaaaa Tree shrew ----acagtttcctggtgc---aaatgggaac-gc--aatc-taattc-tttgga-------ggagggag Malayan flying lemur ac--acagtttcctggtgt---gaatgggaac-ac--aatc-tagttc-tttggat------agggggaa Pig gc--acagtttcctggtgc---aaactggaac-ac--aatc-taattc-tttgga------gagggggag Dolphin at--acagtttcctggtgc---aaattggaac-ac--aatc-taattc-tttgga------gagggggag Cow at--cctgtttcctggtgc---aaattggaac-ac--aatcttaattc-ttcggc------gagggggag Sheep at--actatttcctggtgc---aaattggaac-ac--aatcttaattc-tttggc------gagggggag Horse ac--actgtttcctggtgc---aaattagaac-ac--aatc-taattc-tttgga------gaggg-gag Chinese pangolin a---acggtttcctggtgc---aaattggaac-ac--aatc-taattc-tttgga------gagggagag Dog at--acggtttcctggtgc---aaattggaac-ac--aatc-tgattc-tttgga------gaggg---g Hawaiian monk seal ac--gcagtttcctggtgc---aaattggaac-ac--aatc-taattc-tttgga------ggggg---g Hedgehog gc--acagcttcctggtgc---aaattggaac-cc--aatc-taatta-tttgga------gaaggggac Shrew ac--acaatttcctggtac---aaaacggaat-ac--aacc-taattc-tttgga------gagggggaa Elephant ac--atggtttcctggtgc---aaataggaac-ac--aatc-----ta-atgggt-------gggggcgg Tenrec ac--atgctttcttggtgc---aaataagaac-ac--attc--aattc-tttagg-------gggagagg Opossum acagagagagcctcaatcc---aaatgagaac-ac--gacc-taatta-aattgt--------gggggaa Zebrafish ====================================================================== X. tropicalis ====================================================================== Chicken ====================================================================== Mouse ac--agt---g----------------------------------------------------------- Rat acaaaat---g----------------------------------------------------------- GCF_003668045 gcatggt---g----------------------------------------------------------- Beaver gcatagt---g----------------------------------------------------------- Squirrel acatagt---g----------------------------------------------------------- Guinea pig taatggt---g----------------------------------------------------------- Rabbit gcatggt---g----------------------------------------------------------- Pika gcacggt---g----------------------------------------------------------- Human acatagt---g-------------------------------------------------aaaaaaaaaa Chimp acatagt---gaaa----------------------------------------------aaaaaaaaaa Bonobo acatagt---g-------------------------------------------------aaaaaaaaaa Gorilla acacagt---gaaa----------------------------------------------aaaaaaaaaa Rhesus acatagt---g--------------------------------------------------gaaaaaaaa Marmoset acatagt---g----------------------------------------------------------- Tarsier gcatagt---g----------------------------------------------------------- Bushbaby atatagt---g----------------------------------------------------------- Tree shrew gcatagt---gaaaagacaaaagaaaagaaaagaagagaaaaggaaagaaaaaagaaaagaaagaagaga Malayan flying lemur gcagagc--------------------------------------------------------------- Pig gcagagt---g----------------------------------------------------------- Dolphin gcatagt---g----------------------------------------------------------- Cow gcatagt---g----------------------------------------------------------- Sheep gcatagt---g----------------------------------------------------------- Horse gaataat---g----------------------------------------------------------- Chinese pangolin gaatagt---g----------------------------------------------------------- Dog gaggaag---g----------------------------------------------------------- Hawaiian monk seal gaatagg---g----------------------------------------------------------- Hedgehog ccttaat---g---------------------------------------------------------gg Shrew gcatagt---g----------------------------------------------------------- Elephant tcatagt--gg----------------------------------------------------------- Tenrec gcaaagtgggg----------------------------------------------------------- Opossum actcatt---c----------------------------------------------------------- Zebrafish ====================================================================== X. tropicalis ====================================================================== Chicken ====================================================================== Mouse -----a--------------gaataagctgac---agttgaaaagaaaactttccac-ctctggggaatc Rat -----a--------------aaataggctgac---agtagaaaaaaaaacttttcac-ctctgcatagtc GCF_003668045 -----a--------------aaataggctgac---agttgaaaagaaaacttttctt-ctctggggaacc Beaver -----c--------------aaaaagattgat-agagctgaaaagaaaacttttctt-ccctaggga-cc Squirrel -----a--------------aaaaaggctgat-ggagttgaaaagaaaacttttctt-ctctaggga-tc Guinea pig -----a--------------caaaaggctgac-agagatgaaaag--------tttt-ctctaggga-gc Rabbit -----a--------------aaacagactgac-agagttgcaaagaaaaattttctt-cttgagaga-tt Pika ---------------------------------------ggggggaaaaagtctcct-ctctggaga-tt Human aaaaaa--------------aaaaaggctgac-agagtttaaaagaaaacttttcct-gcctaggga-tc Chimp aaaaaa--------------aaaaaggctgac-agagtttaaaagaaaacttttcct-gcctaggga-tc Bonobo aaaaaa--------------aaaaaggctgac-agagtttaaaagaaaacttttcct-gcctaggga-tc Gorilla aaaaaa--------------aaaaaggctgac-agagtttaaaagaaaacttttcct-gcctaggga-tc Rhesus aaaaaa--------------aaaaagactgac-agagttgaaaataaaacttttctt-gcctaggga-ta Marmoset -gaaaa--------------aaaaaggctgac---agttgaaaagaaaacttttcct--cctaggga-tt Tarsier -----a--------------caaaaggctgac-agaattgaaaagaaaacttttctt-gcctaggga-tc Bushbaby ---gac--------------gaaaaagctgac-agaattgaaaagcaaacttttctt-gcctcagga-tc Tree shrew agaaaa--------------ggaaaggttgac-agagttgaaaagaaaacttttctt-ccccaggga-tc Malayan flying lemur ----aa--------------gaaaaggctgat-agagttgaagagaaaacttttctt-ccctaggga-tc Pig -----a--------------aaaaagactgac-agacttgaaaagaaaacttttcct-ccctaggga-tc Dolphin -----a--------------aaaaagactgac-agagttgaaaagaaaacttttctt-ccctaggga-gc Cow -----a--------------aaaaagactgac-agagttgaaaagaaaacctttctt-ccctaggga-gc Sheep -----a--------------aaaaagactgac-agagttgaaaagaaaacctttctt-ccctaggga-ac Horse -----a--------------aaaaagactgac-agagttgaaaagaaaactttcctt-ccctaggga-tc Chinese pangolin -----a--------------aaaaagactgacaagagttgaaaagaaaacttttctt-ctctaggga-tt Dog -----ggcggggggagagttgaaaagac-------------------aaccgtgctt-ccctagggg-tc Hawaiian monk seal -----a--------------aaaaagactgac-------------agagttgatctt-ccctgggga-tt Hedgehog aaaaaa--------------aaaaagactgac-agagttgaaaagaaaacttttctc-aactaggaa-tc Shrew -----a--------------aaaaagactgac-agaattgaaaagaaaacttttttc-ccctaggga-cc Elephant -----a--------------aaaaagtctgac-agagttgaaaagaaaactttttttcccccagggactc Tenrec -----a--------------aaaaagcctgat-ggagttgaaaagagaacttgtctt-ccctagggactc Opossum --------------------aagggggtagac-aaaatttaaaagaaag---ttctt-ccacagaaa-tc Zebrafish ====================================================================== X. tropicalis ====================================================================== Chicken ====================================================================== Mouse ctgcaaccagaccaaatgtcag Rat ctgcaaccagaccgaatgtcag GCF_003668045 ctgcaatcagaccagatgtcag Beaver ctacaatcagaccaaatgtcag Squirrel ctacaatcagaccaaatgtcaa Guinea pig ctacaatcggaccaactatcag Rabbit ctgcagtcagaccaaatgtcag Pika ctacagacagatcaaaagtcag Human ctaccatcagagcaaatgtcag Chimp ctaccatcagagcaaatgtcag Bonobo ctaccatcagagcaaatgtcag Gorilla ctaccatcagagcaaatgtcag Rhesus ttaccatcagagcaaacgtcag Marmoset ctcccatcagagcgaatgtcag Tarsier ctgcaaccagaccaaatgtcag Bushbaby ctacaatcagactaaaggtcac Tree shrew ttacagtcagaccaaaggtcag Malayan flying lemur ctacaatcagaccaaatgtcag Pig ctacaatcagaccaaatgtcag Dolphin ctacaatcagaccaaatgtcag Cow ctacaatcagaccaaatgtcag Sheep ctacaatcagaccagatgtcag Horse ctacaatcagaccaaatgtcag Chinese pangolin ctacaatcagaccaaatgtcag Dog ctatagtcagaccaactatccg Hawaiian monk seal ctacaatcagaccaagtatcag Hedgehog ctacagccagagcaaatatcag Shrew ctacaaaaagaccatatggtag Elephant ctacaatcagagtaaatgtcag Tenrec ccacaagcagagcaaatgccag Opossum --atagttagactaagtgtcag Zebrafish ====================== X. tropicalis ====================== Chicken ====================== Inserts between block 17 and 18 in window B D Opossum 1545bp Alignment block 18 of 313 in window, 56745588 - 56745985, 398 bps B D Mouse gtcgggaagaatcggat--ta-tagaaggcagtggtgc-ctccacgtagatac-tgttgtctgtttgtga B D Rat gtagggaggaattggag--ta-gagaaggcagtgatgc-ttccgggtagataagtgttgtctatttgtga GCF_003668045 gtaggaaagcatgggat--ta-tgggagggagtgacgg-ttccttgtagacac-tgttgtttattttcga Beaver ttaggaaagtattggat--ta-tggagaggagcaactc-ttcattgtaggtat-tgctgttgattctgga B D Squirrel ttaggaaagtataggat--ca-tggagaggcacaactt-ttc---------at-tgttgttgattgtgga B D Guinea pig tcgaggaaatattggat--ta-tagagaagagcaactc-ttccctgttgctat-tgctgatgattctgga B D Rabbit ttggcaaaggattggct--tactggagag-agcaaatc-ttcatggcagatac-ttgtgttgactctggg B D Pika ctggaaaagtgttggat--tg-tggtg------aaaac-ttcactgtagtgac-tttggttggttctggg B D Human ttgggaaagtattggag--aa-tggaaaggagcaactt-ttcctttcagatat-tattg-tgattttgga B D Chimp ttgggaaagtattggag--aa-tggaaaggagcaactt-ttcctttcagatat-tattg-tgattttgga B D Bonobo ttgggaaagtattggag--aa-tggaaaggagcaactt-ttcctttcagatat-tattg-tgattttgga B D Gorilla ttgggaaagtattggag--aa-tggaaaggagcaactt-ttcctttcagatat-tattg-tgattttgga B D Rhesus ttgggaaagcattggac--aa-tggaaaggagcaactt-ttccttttagatat-tgttg-tgattttgga B D Marmoset ctgggaaagtactggag--aa-tggaaaggagcaactc-ttccttatagacat-tgttg-tgattttcga B D Tarsier ttaggaaatgtttgaag--ta-tggagaggagcagctgactcctcgtagatat-tgttgttgattttgga B D Bushbaby ttggaaaacgattggat--tg-tggaaaggaacaactc-ttccttgtagatgt-------tgattctgga B D Tree shrew ttggaaaggtattggat--ta------aggaacaactc-ttctttggagatag-tgtgcttgattctggg B D Malayan flying lemur ttgggaaagtattggat--ta-tggagaggagcaactc-ttcactatc-atat-tgttgttgattctcga B D Pig ctgaaaaggtattagat--ca-tggagaggagcaactc-ttcattctacatgt-tgt---tgattctaga B D Dolphin ttgaaaaagtattagat--ta-tggagaggagcaactc-ttcattctacatgt-tgt---tgattctgga B D Cow tcggaaaagtattagat--ta-tggagagaagcaaccc-ttcgttctacatat-ggt---tgattctggg B D Sheep ttggaaaagtattagat--ta-tggagagaagcaactc-ttcattctacatat-tgt---tgattctggg B D Horse ttggaaaagtattggct--ta-tggagaggagcaactt-ttcattctagatgt-tgt---tgattctgca B D Chinese pangolin ttggaaaagtattggattata-tggagagaagcaactc-ttcattctaga----tgt---cgattctgga B D Dog ctggaaaagtagtggattata-tggagaggagtaactc-ttcattctaga----tgt---tgattctgga B D Hawaiian monk seal ttggaaaagtaatggattata-tgcagaggagcaattt-tttattctagatgt-tgt---tgattctgga B D Hedgehog ctaggaaagtactgggt--ta--gcaaaggagcaactc-agaagggtgga----tgt---tgattctgaa B D Shrew atgggaaag-attgg----------------gcaactc-tttatactaga----------tgattctgga B D Elephant ttgagacagtatcggat--ta-tggtgaggagcaactc---aattccagatat-tgttgttaattctgag B D Tenrec tccagaaagtattggat--ta-tggttcgatgcaactc-ttaattccagatat-ggttgttgcttctgag B D Zebrafish ====================================================================== B D X. tropicalis ====================================================================== B D Opossum ====================================================================== B D Chicken ====================================================================== Mouse tgtcacctttaaacaaa------------------caggtttctgac-aaatctgtgcatat-aagaagg Rat tgtcacttttaaacaag------------------cagggttctgac-aaatctgtgcatgt-aaaaggg GCF_003668045 tgtcacctttagacaac------------------caggtttccgacaaaatctgtgcatat-aacaagg Beaver tgtcagctttaaacaac------------------ctggtttctgaa-aattttgtgaatat-gaaaaga Squirrel tgtcagcgttgaacaac------------------atggtttcagac-aaatctgtaaacac-agaatga Guinea pig gactggctctaagcaac------------------ttgcttactgac-aaatctgcgaacat-aaaacaa Rabbit tgccagctttaaacaag------------------gtggtt------------tgtgaacat-aaaatga Pika ---cagctttaggcagt------------------gtggtttctgac-acatctgtgaaagg-aaaatga Human tgccagctttaaacaac------------------ccagtttgtgac-acatttgtgattataaaaatga Chimp tgccagctttaaacaac------------------ccagtttgtgac-acatttgtgattataaaaatga Bonobo tgccagctttaaacaac------------------ccagtttgtgac-acatttgtgattataaaaatga Gorilla tgccagctttaaacaac------------------ccagtttgtgac-acatttgtgattataaaaatga Rhesus tgccagctttaaacaac------------------ccagcttgtgac-aaatttgtgattataaaaatga Marmoset tgccagctttaaacaac------------------ccagattctgac-aaatttgtgactat-aaaatga Tarsier caccaactttgaacaac------------------ctggtttctgac-taatctaggaatat-gaaatga Bushbaby tgtcagctttaaacaactagatttttagacaaccacatatttttgac-agatctgtgaatatgaa----a Tree shrew tgccaactttaaac-ac------------------taggtttctgac-aaatttgtgaacac-caaatga Malayan flying lemur tgccagctttaaacgac------------------ctagtttctgac-aaatctgtgaatat-aaaacga Pig tgccagctttaaacaac------------------ctgttttctgacaaaaattgtgaatat-aagatga Dolphin taccagctttaaacaac------------------ctgttttctgac-aagtctgtgaatat-aaaatga Cow tgccagctttaaacaac------------------ctgttttctgac-aaatctatgaatat-aaaatga Sheep tgccagctttaaacaac------------------ctgttttctgac-aaatctgtgaatat-aaaatga Horse tgccagctttaaacaac------------------ctgttttctgac-aaatctgtgaatct-aaaatga Chinese pangolin tgccagatttaaacgac------------------ctgttttctgac-aaatctgtgactat-aaaatgt Dog tgccagctttaaacgac------------------ctgttctctgac-aaatctatgaatat-aaaatga Hawaiian monk seal tgccagctttaaacaac------------------ctgttttctgac-aaatctgtgactat-aaaatga Hedgehog tgccagctt---acagc-------------------------ataac-ctattt---tctga-caagt-c Shrew tgccaactttaaacagc-------------------------ctaac-aaatttgtatatgt-aaaataa Elephant tgccagctttaaacaac------------------ctggtttttgac-aaatttgtgaatat-agca--- Tenrec tgccaacttcatacaac------------------ccaacttcagac-acatttgtgactag-ag----- Zebrafish ====================================================================== X. tropicalis ====================================================================== Opossum ====================================================================== Chicken ====================================================================== Mouse taatttct-----------------ccaagt-gactgctc--t--ttg-----aag-cacctgtatcaga Rat taatttct-----------------ccaaat-gaccgctc--t--ttg-----aaa-cacctgtatcaga GCF_003668045 taacttcc-----------------ctggat-ggccactc--t--ttg-----aag-gacctataccaga Beaver taattcctg----------------caaaac-aaccaccc--a--ttt-----gaa-gccctgtgtcaga Squirrel taatttctt----------------tgaaat-gatcaccc--c--ttt-----aaa-acactgttttgga Guinea pig ggatttgta----------------caaaat-gaacatcc--c--ttc-----taa-gctctttatcaga Rabbit tcatttcta----------------taaaat-gatcaccc--c--ctc-----aaa-gcactaggtcaca Pika tcatttcta----------------taaaat-gatcaccc--c--tac-----aaatgccctgtgg---a Human tcatttcta----------------caaaaatgctcactc--t--ttt-----aaa-gcactgtgttaga Chimp tcatttcta----------------caaaaatgctcactc--t--ttt-----aaa-acactgtgttaga Bonobo tcatttcta----------------caaaaatgctcactc--t--ttt-----aaa-acactgtgttaga Gorilla tcatttcta----------------caaaaatgctcacac--t--ttt-----aaa-gcactgtgttaga Rhesus tcatttctg----------------caaaaatgatcactc--t--ctt------aa-gcactgtgttaga Marmoset tgatttcta----------------caaaaatgatcactc--t--ctt-----aaa-gcact-tgtcaga Tarsier tcatttcta----------------caagat-----------------------ga-ttactgtgtcgga Bushbaby tcattt-tg----------------tagaaa--------------------------------tgtcaga Tree shrew taattt----------------------------ttactc--c--ttc-----aaa-gcactgcatcaga Malayan flying lemur tcatttcta----------------caaaac-gatcacac--c--ttc-----tga-gcactgtgtcaga Pig ttctttccataaatgatcatttctacaaaat-gactgccc--c--ttt-----gaa-gcactgtgttaga Dolphin ttagttctaccaatgatcgtttctacaaaat-gattgccc--c--ttt-----gaa-gcactgtatcaga Cow ttatttctaccaatgatctttcct-caaaat-gattgccctgc--ttt-----gaa-gctcagtatcaga Sheep ttatttctacaaatgatctttcct-caaaat-gattgccctgc--ttt-----gaa-gctcagtatcaga Horse ttat-------------------------at-gatcaccc--c--gtg-----gaa-gcactgtgtcaga Chinese pangolin ttatttctataaatgaacagttctacaaaat-gactgccc--c--taa-----gaa-gcac--ggtcaga Dog ttatttctagaagtgatcatttctacaaaat-gattgccc--t--ttca----aaa-gcactgtgtcaga Hawaiian monk seal ttatttctataagtgatcaattttac-aaat-gatcattt--c--tacaaatcaaa-gcactgtgtcaga Hedgehog ttagagtacaaaataatgatttctacaaaat-catgacca--ccatcc-----tgt-g------------ Shrew ttattttttcaaatgatcctttctacaaaag-gattttca--t--ttc-----tga-g------------ Elephant --ctttgta----------------taaaat-gatcatcc--t--gtt-----gaa-gcaccgtgtcaga Tenrec --ctttcta----------------cacagt-ggccatct--t--ttc-----tga-gcacagtgtcaga Zebrafish ====================================================================== X. tropicalis ====================================================================== Opossum ====================================================================== Chicken ====================================================================== Mouse ggg-------------aag---------------tg-tgt-aaaaccaag-tataaacggcactgtc-ac Rat tgg-------------gag---------------tg-tat-aaaatcaag-tataaaagacactgtc-aa GCF_003668045 tag-------------aag---------------tg-ttt-aaaatcaag-tttaaacgacaccctg-aa Beaver -ag-------------aag---------------tg-ttt-aaaatcaagatatagatg-cgttgtc-aa Squirrel tgg-------------aag---------------tg-ttt-aaaattaag-ctatggtggctttgtc-aa Guinea pig tga-------------aag---------------tg-ttt-aaaatcaaa-tc---atagttttgtc-aa Rabbit tgg-------------aag---------------tg-ttt-aaaaccaagttttaagtgccttggtc-ac Pika tggaaggaagtgcttaaag---------------tg-ttt-aaaaccagattataagggacttcctc-ac Human tgg-------------aag---------------tg-ttt-aaaatcaag-ttacaatggctttgcc-aa Chimp tga-------------aag---------------tg-ttt-aaaattaag-ttacaatggctttgcc-aa Bonobo tgg-------------aag---------------tg-ttt-aaaattaag-ttacaatggctttgcc-aa Gorilla tgg-------------aag---------------tg-ttt-aaaatcaag-ttacaatggctttgcc-aa Rhesus tgg-------------acg---------------tg-ttt-aaaatcaag-ttacaatggctttgcc-aa Marmoset tgg-------------aag---------------tg-ttt-aaaatcaag-ttacaatggctttgtc-aa Tarsier tgg-------------aagctagctatagtgacttg-tta-aaaattaag-ctatagtggctttgtc-aa Bushbaby tgg-------------aag---------------tg-ttt-aaaatcaag-ttacagtggctttgtc-aa Tree shrew tgg-------------aag---------------tg-ttt--aaatccag-ttataatggctttatc-aa Malayan flying lemur tgg-------------aag---------------tg-tttaaaaatcaag-ttatagtggctttgtc-aa Pig tgg-------------aag---------------ta-ttt-aaaatcaag-ttgtactagctttgtc-aa Dolphin tgg-------------aag---------------ta-ttt-aaaatcaag-ttgtagtagttttgtc-aa Cow tgg-------------aag---------------tgtttt-aagatc--g-tagtagtagctttgtc-aa Sheep tgg-------------aag---------------tg-ttt-aagatc--g-tagtagtagctttgtc-aa Horse tgc-------------aaa---------------tg-ttt-aaaatcaag-ttgtagtggctttgtc-aa Chinese pangolin tgg-------------aag---------------ta-ttt-ataatcaag-ttgtagaggctttgta-aa Dog tgg-------------aag---------------ta-ttt-aaactcaag-ttgtggtggctttgtc-aa Hawaiian monk seal tgg-------------aag---------------ta-ttt-aaaatcagg-ttgtagtggctttgtcaaa Hedgehog ----------------aag---------------tg-cat-ccaatcagg-ttgtagcagcgttgtc-aa Shrew ----------------ga-------------------------aatcaag-ttatagtggctttgtc-aa Elephant tgg-------------aag---------------ta-ttt-aaaatcaag-ttccagtggctttgtc-aa Tenrec tgg-------------aga---------------ta-ttt--aaatcagg-ttgccgaggcttggtc-aa Zebrafish ====================================================================== X. tropicalis ====================================================================== Opossum ====================================================================== Chicken ====================================================================== Mouse ac-----------ttctatgcgcggagtcca-----gaag-cagaactagat-gaa----tgtag----- Rat ac-----------ttctatacatggggccca-----gaag-cagaattagat-gca----tgcaa----- GCF_003668045 ac------------tctatacacaggaccaa-----ggag-caaaa-tatat-aca----tgtag----- Beaver ac-----------ttccacccgtacaaccca-----gaaa-caaaaatatatcgtt----ttcag----- Squirrel ac----gtcactcttcaatccctagctccaaaataggaaa-caaaaagacatcact----tgtgg----- Guinea pig at----gtggtccttctgcccataggacctg-----gaga-taataatatattgtg----tctag----- Rabbit ac----ttcactccttcatccgtaggactca-----aaga-cgaaaatatattg---------------- Pika at----ttcactccttcatctatagtaccca-----aaga-tgcgaatacatt----------------- Human ac------cactcctccacccataggaccca-----aaga-caaacatacattgtt----tgtag----- Chimp ac------cactcctccacccataggaccca-----aaga-caaacatacattgtt----tgtag----- Bonobo ac------cactcctccacccataggaccca-----aaga-caaacatacattgtt----tgtag----- Gorilla ac------cactcctccacccataggaccca-----aaga-caaacatacattgtt----tgtag----- Rhesus ac----ttcgctcctccatccataggaccca-----aaga-caaacatacattgtt----tgtag----- Marmoset ac----ttccatcctccacccataggaccca-----aaga-caaaaatacattgtt----tgtag----- Tarsier ac----ttcgctcctccacccatgggaccct-----aaaa-tgaaaatatattgct----tgtag----- Bushbaby ac----tttgctcctccacccaaagtaccca-----aaga-taaaaacatcatcttcaaatgtct----- Tree shrew ac------cactcctccacccgtagacccca-----tgga-cacaaatgcatttct----tggag----- Malayan flying lemur ac----tttgttcctccagtcattggaccca-----aaga-taaaaatacattgtt----cataa----- Pig ac----ttcggttctc-acccacaggttcca-----aaga-caa------actgct----catag----- Dolphin acttcattcagtcctctacccatgggtccca-----aaga-cca------actgct----catag----- Cow ac----ttcagtcgtccacccatgggtccca-----aaga-caa------actgct----cctag----- Sheep ac----ttccgtcctccacccatgggtccca-----aaga-caa------actgct----cctag----- Horse at----ttaggtcctacacccataggtccca-----aaga-caaaaacacattgct----tccag----- Chinese pangolin ac----attggtcctccacccataggtccca-----aaga-caaaaatacattgct----caaac----- Dog ac----ttcagtcctccacccataggtccca-----aaga-caaaaacacattgct----catag----- Hawaiian monk seal ac----ttcagtcctccacctataggttcca-----aaga-caaaaacatattgct----catag----- Hedgehog at----tttgttccttcatccctagagccca-----caga-gaaaaacaaattgct----gatag----- Shrew a------ttgcttctccacctatagaaccca-----caaattcaaaacaaactgct----gactg----- Elephant ac----ttcgctcctttacccacaggtacca-----ggca-caaaaatacattcct----tgtaatcttc Tenrec ac----ttgagtcctccatccataggtgcca-----aaca-caaaaatacattcct----ggtag----- Zebrafish ====================================================================== X. tropicalis ====================================================================== Opossum ====================================================================== Chicken ====================================================================== Mouse --------tc------------ttcaaa------------------------------------------ Rat --------tc------------ttcaaa------------------------------------------ GCF_003668045 --------tc------------ttcaaa------------------------------------------ Beaver --------tc------------ttcaaa------------------------------------------ Squirrel --------tc------------t--aag------------------------------------------ Guinea pig --------tc------------ttcaaa------------------------------------------ Rabbit ---------c------------ttcaaa------------------------------------------ Pika ---------------------------------------------------------------------- Human --------cc------------ttcaca------------------------------------------ Chimp --------cc------------ttcaca------------------------------------------ Bonobo --------cc------------ttcaca------------------------------------------ Gorilla --------cc------------ttcaca------------------------------------------ Rhesus --------cc------------ttcaca------------------------------------------ Marmoset --------cc------------ttcacc------------------------------------------ Tarsier --------cc------------ttcaaa------------------------------------------ Bushbaby --------cctctttgaaattattcaaa------------------------------------------ Tree shrew --------cc------------ttcaaa------------------------------------------ Malayan flying lemur --------tc------------ttcaaa------------------------------------------ Pig --------tc------------ttcaaa------------------------------------------ Dolphin --------tt------------ttcaaa------------------------------------------ Cow --------tt------------ttcaaa------------------------------------------ Sheep --------tt------------ttcaaa------------------------------------------ Horse --------tc------------tttaag------------------------------------------ Chinese pangolin --------tc------------tttaaa------------------------------------------ Dog --------tc------------ttcaaa------------------------------------------ Hawaiian monk seal --------tc------------ttcaaa------------------------------------------ Hedgehog --------tt------------ttcata------------------------------------------ Shrew --------tt------------ttcaga------------------------------------------ Elephant aaataccttc------------tttgaaattacacttggtcacaaaaaagatgccaatgattcaaaactt Tenrec --------cc------------tttaaaattacacctgatc----------------------------- Zebrafish ====================================================================== X. tropicalis ====================================================================== Opossum ====================================================================== Chicken ====================================================================== Mouse -----------------------------------------------------tatct--ttt---tt-- Rat -----------------------------------------------------tatct--ttt---ttc- GCF_003668045 -----------------------------------------------------tactt--ttc---tt-- Beaver -----------------------------------------------------tattt--cct---cttt Squirrel -----------------------------------------------------tatct--cct---tt-- Guinea pig -----------------------------------------------------tattt--cct---tttt Rabbit -----------------------------------------------------tacct--cct---cttt Pika ---------------------------------------------------------------------- Human -----------------------------------------------------tatct--ctt---t--- Chimp -----------------------------------------------------tatct--ctt---t--- Bonobo -----------------------------------------------------tatct--ctt---t--- Gorilla -----------------------------------------------------tatct--ctt---t--- Rhesus -----------------------------------------------------tatct--ctt---t--- Marmoset -----------------------------------------------------aatct--ctt---t--- Tarsier -----------------------------------------------------tagct--cct---tttg Bushbaby -----------------------------------------------------tatct--cctctat--- Tree shrew -----------------------------------------------------tatcc--cctcttt--- Malayan flying lemur -----------------------------------------------------tatct--cttcttt--- Pig -----------------------------------------------------tatcc--tct---cttt Dolphin -----------------------------------------------------tatct--tct---cttt Cow -----------------------------------------------------tatct--tct---cttt Sheep -----------------------------------------------------tatct--ttt---cttt Horse -----------------------------------------------------tatct--tcc---tttt Chinese pangolin -----------------------------------------------------tatct--tct---cttt Dog -----------------------------------------------------tatct--ttt---cttt Hawaiian monk seal -----------------------------------------------------tatct--ttt---cttt Hedgehog ------------------------------------------------------acctctctt---ctct Shrew -----------------------------------------------------tatcttattt---ttta Elephant cgctcctttacccacaggtaccaggcacaaaaatacattccttgtagtcttcaaatac--ctt---cttt Tenrec -------------------------------------tctctctctctctctctctct--ctc---tctc Zebrafish ====================================================================== X. tropicalis ====================================================================== Opossum ====================================================================== Chicken ====================================================================== Mouse ----------------------------------------------ccaatatg-----cataactg-ta Rat ---------------------------------------------ccccatatg-----ca-aactg-ta GCF_003668045 -----------------------------------------------cagtatg-----catgactg-ta Beaver aa----a-----attatacttggtcac-ttaaagtt-gccagtgattcaacatg-----cacaacta-ta Squirrel aa----a-----attttatttggtcac-ttaaagat-gccactaattcaatatg-----cacaacaa-tc Guinea pig aa----a-----attacacttggtcac-ttaaagaa-g--------tcagtg-----------------a Rabbit ga----aattacact----ttagtcac-ttaaagat-gccaatgatttaatatg-----gacaactc-tg Pika -------------------------------cgaat-gccagtgatcccatatg-----gactattcggg Human ga----a-----actatacctggtcac-tgaaaaat-gccaataattcaatatt-----ctcaaccc-ca Chimp ga----a-----actatacctggtcac-tgaaaaac-gccaataattcaatatt-----ctcaaccc-ca Bonobo ga----a-----actatacctggtcac-tgaaaaac-gccaataattcaatatt-----ctcaaccc-ca Gorilla ga----a-----actatacctggtcac-tgaaaaac-gccaataattcaatatt-----ctcaaccc-ca Rhesus ga----a-----actacacctggacac-cgaaaaat-gccaataattcaatatg-----cacaaccc-ta Marmoset gaaacta-----actatacctggtcac-tgaaaaat-ggcaatgattcaatatg-----cacaactc-ca Tarsier ga----a-----attatacctgggcac-tgaaaaat-gtcagtgactcagtatg-----cacaaacc-ta Bushbaby ga----a-----attactcctggccac-tgaaaaac-accagtgattcaatatg-----cacaaccc-ca Tree shrew aa----a-----attacact-ggtttc-tttaaaat-accaatgattcaatatg-----cacaaccc-tg Malayan flying lemur aa----a-----attacacc--ttcac-ttagagatggcaaaggattcaatatgcacaacacaacca-ta Pig ta----a-----aatgtacttgctcac-ttaaagat-gccaatgattcagtatg-----catacttt-ta Dolphin aa----a-----attctacttgctcac-ttaaagat-gccagtgattcaatatg-----tacacctc-ta Cow aa----a-----attgtacttgctcac-ttaaagat-gccgatgattcaacatg-----cacacctc-tt Sheep aa----a-----attgtacttgctcac-ttaaaggt-gccgatgatttaacatg-----cacacctc-tt Horse aa----a-----atggcactttgtcac-ttaaagac-gccagtgattcaatatg-----cacaaccc-ta Chinese pangolin aa----a-----attgcacttggtcac-ttaaagat-gccagtgattccatatg-----cacactcc-ta Dog aa----a-----actgcacttagtcat-ttaaggat-ggcagtgattcaagagg-----cacacttc-ta Hawaiian monk seal aa----a-----actgcactaagtcat-ttaaagat-ggcagtgattcaatagg-----cacacttc-ta Hedgehog aa----a-----actgtacttgattac-taagagat-gcaagcaattcactata-----cacaaccc-ta Shrew aa----a-----attgcacttggttat-tta-agat-gacagtgatttgatatg-----cacaacta-ta Elephant aa----a-----attacacttggtcacaaaaaagat-gccaatgattcaatatc-----cacaaccc-tc Tenrec ac----a-----cacacac---------acacacac-cccaatgatccaatatg-----cacaaact-tc Zebrafish ====================================================================== X. tropicalis ====================================================================== Opossum ====================================================================== Chicken ====================================================================== Mouse gatattattattattattt---------------------ggtctgtatttccttt--aagaacagagag Rat gatgttatgaaaatctttt-------aggg--------ggggtctgtatctccttt--aagaacagaaag GCF_003668045 gatactgtgacaatcaccttact-ctagaagt-t-tttgttgtttgtatctccttt--gagaacagaaaa Beaver ggtattgtggtaattaccttaca-ctatataa-t-tt---tctttgtgcttccttc--aagaacagaaag Squirrel gatattgtggtaatcaccttaca-ctatataa-t-tt---tctttgcatctccatc--aagaaataaaag Guinea pig tttggtatgtacaacatactgta-ctatgtag-g-tt---tccttacatctccagc--aagaaaagaaaa Rabbit tgtacagtagtaatcaccttata-acacataa-t-tt---tctttgcttttctatc--aagaacagagag Pika tgcgctgtagccagtaccttata-aggcataa-t-tt---gcttcacttgtctgtc--aagaatagaggg Human ggtattatagtaattactttaca-ccatacaa-t-tt---tctttgcatctccacc--aagaacagaaag Chimp ggtattatagtaattactttaca-ccatacaa-t-tt---tctttgcatctccacc--aagaacagaaag Bonobo ggtattatagtaattactttaca-ccatacaa-t-tt---tctttgcatctccacc--aagaacagaaag Gorilla ggtattatagtaattactttaca-ccatacaa-t-tt---tctttgcatctccacc--aagaacagaaag Rhesus ggtattatagtaattattttaca-ccatacaatt-tt---tctttgcatctccacc--aagaacagaaag Marmoset agtatcatagtaa-----ttaca-ccatacaa-t-tt---tctttgcatctccaac--aagaacagaaag Tarsier cgtattctagtaatctgtgtaca-ccatgcaa-t-tt---tctttgcatcttcatc--aagttcaggaag Bushbaby agtactgtggtaatcacttgaca-ccatataa-t-tt---tctttccatcttcatt--aagaagagaaag Tree shrew tatattgcggtaatcaccccaca-ccatataa-t-tt---tctttgtgtctttatg--aagaacagaaag Malayan flying lemur ggtgttgtggtaatcaccttaca-ccacagaa-t-tt---tctttgcatctctgtc--aagaacagaaag Pig ggta--------atcagtttaca-caatataa-t-tg---tctttgcatctctgct--aagaacataaag Dolphin ggtatcgtggtaatcagtttacgcccgtataa-t-tt---tctttgcatctctatt--aaaaacataaag Cow ggtattgtggtaatcggtttaca-tcatataa-t-tt---tctttgcgtctctata--aagagaataaag Sheep ggtattgtggtgatcggtttaca-tcatataa-t-tt---tctttgcggctctata--aagagcataaag Horse agtattgtggtaatcactttaca-ccatataa-t-tt---tcttcgcatctctgtt--aagaacataaag Chinese pangolin ggtattgtggtaatcagtttaca-ccctataa-t-tt---tctttgcaactctatt--aagaacataaag Dog ggtattgtggtcatcagtttaca-acatataa-t-tt---tctttatatctctattaaaaaaacataaag Hawaiian monk seal ggtattgtggtaatcagtttaca-gcatataa-t-tc---tctttgtatctctatt--aagaacataaag Hedgehog ggcattgtggtaagcagtttaca-ctgtataa-c-tg---ccttttcatttgtgtt--aggaatggaaag Shrew tgtattgtggtaatcgatatgca-tcataaaa-agtt---tctttgcatct-tatt--aaggacaataag Elephant agtattgtaataatcagtttaca-ccatataa-t-tt---tctttgcatctccatt--aagaacagaaag Tenrec agcattgtggtaattatttcaca-ccatataa-t-tt---tctttgcatctcc-tt--aagaactgaaag Zebrafish ====================================================================== X. tropicalis ====================================================================== Opossum ====================================================================== Chicken ====================================================================== Mouse tttggcagatggctt-ggct----ttgct-cttttt-tttttaaatgttaaattctactttcattttctt Rat attggtaga-----t-ggtt----ttgct-cccttt-ctt---aacgttaaattctactttcattttctt GCF_003668045 ataggcaca-----t-ggtt----tcatc-cctttt-ctt---aa-attgaattttactttca------- Beaver ggtaagtta-----t-gact----ttact-cctttc-ctt---aacactgaattctactttcattttctt Squirrel ggtaactgg-----t-ggct----tcccc-cctttt-ctt---aatacttgattctactttcattt---- Guinea pig ggtaac--------t-gttt----taact-cctttt-ctt---aacacttaattttacttccattttctt Rabbit gataaccta-----t-ggct----ttctt-cccttc-ctt---aacatttaattctactttcgttttgtt Pika gataactga-----t-ggct----ttgtt-ccattt-c----------ttatttctactttcgttttctt Human aataactga-----t-ggca----ttaca-c------ctt---aacacttaattttactttcattttctt Chimp aataactga-----t-ggca----ttaca-c------ctt---aacacctaattttactttcattttctt Bonobo aataactga-----t-ggca----ttaca-c------ctt---aacacctaattttactttcattttctt Gorilla aataactga-----t-ggca----ttaca-c------ctt---aacacttaattttactttcattttctt Rhesus aataacaga-----a-agaa----aaaaa-t--------------aacttaattttactttcattttctt Marmoset aataactga-----t-gaca----ttaca-c------ctt---aacacttaattctactttcattttctt Tarsier aataactca-----t-ggta----tcaca-c------tgt---aacacttaattctactttcattttctt Bushbaby ggcaactga-----t-ttct----ttact-cctttt-ctt---aacacttcattctactttcattttctt Tree shrew ggtaactga-----tgggtt----ttact-cctttt-ctt---aatgcttaattccactttcattttctt Malayan flying lemur gataagtga-----t-ggct----ttgct-cctttt-ctt---aacacttaattctactttcattttctt Pig gagagctga-----t-ggct----ttact-tcttttccaa---aatacgtaattctactatcattttctt Dolphin gatagctga-----c-ggct----ttact-tcttttccaa---aatactta----tactttaattatcct Cow gatagttga-----c-agct----ttagc-tcttttccaa---aacacttaattccactttaattttcct Sheep catagttga-----c-agct----ttacc-tcttttccaa---aacacttaattcctctttaattttcct Horse gataactga-----t-gattttacttact-cctgtttcaa---aacacttaatcctactttcattttctt Chinese pangolin g-taact-a-----t-ggct----ttaca-ccttttttag---cacacttaattctactttcattttctt Dog gataactga-----c-agct----ttact-cctttttcaa---aacccttaattctaccttcattttctt Hawaiian monk seal gataaatga-----c-agcg----ttactccctttttaaa---aacacttaattctgccttcatttcctt Hedgehog aataacgga-----c-gatt----ttact-cctttttcaa---aacacttgattctac-----tcctctt Shrew gaaa----a-----t-tatt----ttact-cctttttcaa---aacaattaatttga------------- Elephant gataactga-----t-ggct----tgact-cctttt-tta---aacacttaatagtattttctgtttctt Tenrec ttcaactaa-----t-ggc-------------------ca---aacacttcactctacttgcactggttt Zebrafish ====================================================================== X. tropicalis ====================================================================== Opossum ====================================================================== Chicken ====================================================================== Mouse aaca-ttttatttca Rat taca-ctttatttca GCF_003668045 --------------- Beaver aacc-tcttatttca Squirrel -------ttatttca Guinea pig aaca-ttttatttaa Rabbit aacc-ttgtattcaa Pika aacc-tttttttc-- Human aacc-t---atttca Chimp aacc-t---atttca Bonobo aacc-t---atttca Gorilla aacc-t---atttca Rhesus aacc-t---atttca Marmoset aacc-g---atttca Tarsier aagc-gttaatttca Bushbaby aacc-ttttatttca Tree shrew aaca-ttttatttca Malayan flying lemur aacc-ttttattcca Pig accc-ttttattgca Dolphin aacc-ttttgtttca Cow aacc-ttttgtttca Sheep aacc-ttttgtttca Horse aatc-gtctgtttca Chinese pangolin aacctttttatttca Dog aac--ttttatttca Hawaiian monk seal aact-ttttatttca Hedgehog agcg-tttca----- Shrew --------------- Elephant aacc-ttttatttct Tenrec gcac-ttttattttc Zebrafish =============== X. tropicalis =============== Opossum =============== Chicken =============== Inserts between block 18 and 19 in window B D Shrew 63bp Alignment block 19 of 313 in window, 56745986 - 56746020, 35 bps B D Mouse ttttttctttctga------------------------------------tgtttta----aaaaaa-a- B D Rat ttttctctatctga------------------------------------tgcctaa----aaaaaaga- GCF_003668045 ---tctctttctga------------------------------------tacttaa----aaac---a- Beaver ttttttctgcctta------------------------------------tacttga----aaaag--c- B D Squirrel ttttctctt----a------------------------------------tacttaa----aaaaa--a- B D Guinea pig ttttctcttccttg------------------------------------tccttaa----aaaaaa-a- B D Rabbit ttc-----------------------------------------------tttttaa----a------a- B D Pika ---------------------------------------------------ccttta----a------a- B D Human ttttctctttcttg----------------------------tatatacatttttta----aa-----c- B D Chimp ttttctctttcttg----------------------------tatatatatatttta----aa-----c- B D Bonobo ttttctctttcttg----------------------------tatatatatttttta----aa-----c- B D Gorilla ttttctctttcttg----------------------------tatatatatatttta----aa-----c- B D Rhesus ttttctctttcttg----------------------------tatatacatatttga----aa-----ct B D Marmoset ttttctctttcttgtatatatatatatacaaatatatatatatatatatatatttaa----aa-----c- B D Tarsier ttttctctttttcg----------------------------tatgcat-ttttaaa----ag-----c- B D Bushbaby ttttctctgtcttg----------------------------tatatg--tttttaa----aa-----c- B D Tree shrew catt---tttcttg----------------------------tat-----taaaaaaaaagaa-----t- B D Malayan flying lemur ctttctctttcttg----------------------------tgt-----tttttaa----aa-----c- B D Pig ---------------------------------------------------------------------- B D Dolphin ---------------------------------------------------------------------- B D Cow ---------------------------------------------------------------------- B D Sheep ---------------------------------------------------------------------- B D Horse ---------------------------------------------------------------------- B D Chinese pangolin ---------------------------------------------------------------------- B D Dog ---------------------------------------------------------------------- B D Hawaiian monk seal ---------------------------------------------------------------------- B D Hedgehog ---------------------------------------------------------------------- B D Elephant ---------------------------------------------------------------------t B D Tenrec ---------------------------------------------------------------------t B D Zebrafish ====================================================================== B D X. tropicalis ====================================================================== B D Opossum ====================================================================== B D Chicken ====================================================================== B D Shrew ====================================================================== Mouse ----------ccattct----------------------------------- Rat ----------acattct----------------------------------- GCF_003668045 ----------cctttct----------------------------------- Beaver ----------cccatct----------------------------------- Squirrel ----------acactgt----------------------------------- Guinea pig ----------catctcc----------------------------------- Rabbit ----------accctct----------------------------------- Pika ----------tccctct----------------------------------- Human ----------tctttca----------------------------------- Chimp ----------tctttca----------------------------------- Bonobo ----------tctttca----------------------------------- Gorilla ----------tctttca----------------------------------- Rhesus ----------tttttca----------------------------------- Marmoset ----------tctttta----------------------------------- Tarsier ----------cctgtct----------------------------------- Bushbaby ----------tctt-------------------------------------- Tree shrew ----------gacctct----------------------------------- Malayan flying lemur ----------cctttct----------------------------------- Pig -------------ttga----------------------------------- Dolphin -------------ttga----------------------------------- Cow -------------ttga----------------------------------- Sheep -------------ttga----------------------------------- Horse -------------ttaa----------------------------------- Chinese pangolin -------------ctaa----------------------------------- Dog -------------ttaa----------------------------------- Hawaiian monk seal -------------ttaa----------------------------------- Hedgehog ------------cttaa----------------------------------- Elephant gta----------ttaaaaaaaaaaaaa--------------------ccct Tenrec atatgtgtcggatttgaaaacagcagaagcagtagcaacaaaacccttctct Zebrafish ==================================================== X. tropicalis ==================================================== Opossum ==================================================== Chicken ==================================================== Shrew ==================================================== Inserts between block 19 and 20 in window B D Pika 4bp B D Pig 10bp B D Dolphin 10bp B D Cow 10bp B D Sheep 10bp B D Horse 24bp B D Chinese pangolin 13bp B D Dog 20bp B D Hawaiian monk seal 20bp B D Hedgehog 7bp Alignment block 20 of 313 in window, 56746021 - 56746056, 36 bps B D Mouse t--tata-attctacc----attaa-----c----aatta-cggtat-------ttccag B D Rat t--taca-attccacc----gttga-----c----aatcg-cggtat-------ttccag GCF_003668045 t--tttt-atttattt----attag--ttct----agtca-gggaacaagcttgtttcac Beaver c--tatg-actctgcc----acttgactggc----actta-tggtat-------ttacaa B D Squirrel c--tata-tttctgcc----actgg-----c----actaa-tgctat-------ttacag B D Guinea pig a--taag-accctgcc----attgc-----c----gctca-tggtat-------tcacag B D Rabbit a--taaa-ccccattcct--actga-----t----acttg-tggcat-------tcacag B D Pika g--taaa-tcccactcctgaactg------t----acttg-tggcat-------tcagag B D Human g--gaaa-accctgcc----actaa-----c----accca-tggcat-------gtatag B D Chimp g--gaaa-accctgcc----actaa-----c----accca-tggcat-------gtatag B D Bonobo g--gaaa-accctgcc----actaa-----c----accca-tggcat-------gtatag B D Gorilla g--gaaa-accctgcc----actaa-----c----accca-tggcat-------atatag B D Rhesus g--gaaa-accctgcc----actaa-----c----accca-tggcat-------gtatag B D Marmoset g--gata-accctgcc----actga-----c----accca-tgacat-------gtagag B D Tarsier c--tata-accctgcc----actga-----c----accca-tggcat-------gaataa B D Bushbaby ---aaca-accctgcc----agt----------------a-tggaat-------acatag B D Tree shrew c--tcta-accctgcc----actgc-----t----actgg-aggcgt-------ttatag B D Malayan flying lemur t--tata-atcctgct----attga-----c----attcg-tggcat-------ttatag B D Pig ctatata-acctcatc----actaa-----c----actgg-tggcat-------ttacag B D Dolphin c--tata-accttacc----tctga-----c----actgg-tggcat-------ttacag B D Cow c--tatg-accttacc----tctga-----c----actgg-tggcac-------ttacag B D Sheep c--tatg-accttacc----tctga-----c----actgg-tggcac-------ttacag B D Horse c--tcta-accttacc----actga-----c----atagg-tggcat-------ttacag B D Chinese pangolin c--tctatacctcact----accaa-----c----actgg-aggtat-------ttacag B D Dog c--taca-accttgcc----actga-----c----actggttggcat-------ttactg B D Hawaiian monk seal t--tata-accttacc----actga-----c----gctgg-tggcat-------ttacag B D Hedgehog t--cata-acttcaca----agtga-----tactcattca-cggcat-------ttt--- B D Shrew t--tagc-cttttacc----catga-----t----cttta-tggcat-------tct-ac B D Elephant c--tgta-tccctgcc----actgc-----c----atttg-tggggt-------ttag-- B D Tenrec c--ttta-accctgcc----actgc-----t----gttgt-tgcggg-------gcag-- B D Zebrafish ============================================================ B D X. tropicalis ============================================================ B D Opossum ============================================================ B D Chicken ============================================================ Inserts between block 20 and 21 in window B D Guinea pig 43bp B D Rabbit 12bp B D Pika 12bp B D Pig 1bp B D Dolphin 1bp B D Cow 1bp B D Sheep 1bp B D Horse 1bp B D Chinese pangolin 1bp B D Dog 1bp B D Hawaiian monk seal 1bp B D Hedgehog 1bp B D Shrew 1bp Alignment block 21 of 313 in window, 56746057 - 56746067, 11 bps B D Mouse aatta---------------ctat----tt B D Rat acttag--------------ttat----tt GCF_003668045 atgtaa--------------gtcc----ct Beaver tagcag--------------ttacaggatt B D Squirrel tgtcagcgacaga-----atttat----tt B D Rabbit ------------attttttttttt----tt B D Pika ------------g-----attgtt----tc B D Human -----------------tggtaat----t- B D Chimp -----------------tggtaat----t- B D Bonobo -----------------tggtaat----t- B D Gorilla -----------------tggtaat----t- B D Rhesus -----------------tggcaat----t- B D Marmoset -----------------tggtaat----t- B D Tarsier -----------------tggtcac----t- B D Bushbaby -----------------tgttaat----t- B D Tree shrew -----------------tggtaat----t- B D Malayan flying lemur -----------------tggtaat----t- B D Pig ------------------ggtaat----t- B D Dolphin ------------------gataac----t- B D Cow ------------------ggtaac----t- B D Sheep ------------------ggtaat----t- B D Horse ------------------ggtaac----t- B D Chinese pangolin ------------------ggtaac----t- B D Dog ------------------ggtaac----t- B D Hawaiian monk seal ------------------ggtaat----t- B D Hedgehog ------------------gggtgt------ B D Shrew ------------------ggtaac------ B D Elephant ---------------agtggt--------- B D Tenrec ---------------agtggt--------- B D Guinea pig ============================== B D Zebrafish ============================== B D X. tropicalis ============================== B D Opossum ============================== B D Chicken ============================== Inserts between block 21 and 22 in window B D Human 13bp B D Chimp 13bp B D Bonobo 13bp B D Gorilla 13bp B D Rhesus 14bp B D Marmoset 10bp B D Tarsier 13bp B D Bushbaby 14bp B D Tree shrew 41bp B D Malayan flying lemur 14bp B D Pig 2bp B D Dolphin 2bp B D Cow 2bp B D Sheep 2bp B D Horse 2bp B D Chinese pangolin 2bp B D Dog 2bp B D Hawaiian monk seal 2bp Alignment block 22 of 313 in window, 56746068 - 56746087, 20 bps B D Mouse aaaaaca------------------atatgcatataa---c B D Rat aaaaaga------------------ataggcatatac---c GCF_003668045 aaaaacacctttctttagctgacccattaacattcac---g Beaver aaaaaaa---------------ataatgtgcacataa---c B D Squirrel ctgagtc------------------atacacatataa---c B D Rabbit ttgagtc------------------agaggcacaaaa---c B D Pika aaaagtc------------------agaggtgcataa---c B D Human ttaagtc------------------atatgcacatat---c B D Chimp ttaagtc------------------atatgcacatat---c B D Bonobo ttaagtc------------------atatgtacatat---c B D Gorilla ttaagtc------------------atatgcacatat---c B D Rhesus ttaagtc------------------atatgcacatat---c B D Marmoset ---agtc------------------atatgcacttat---c B D Tarsier tt--gtc------------------acgtgcacatatcagc B D Bushbaby ttgaatc------------------atatgtaggtga---c B D Malayan flying lemur ttgagtc------------------atacgcatattt---a B D Pig ----------------------------agtatttat---t B D Dolphin ----------------------------agtatttat---t B D Cow ----------------------------actatttgt---t B D Sheep ----------------------------actgtttgt---t B D Horse ----------------------------agtatttgt---t B D Chinese pangolin ----------------------------catatttat---t B D Dog ----------------------------agtctttat---t B D Hawaiian monk seal ----------------------------agtatttac---t B D Hedgehog ------------------------------tacttat---t B D Shrew ------------------------------tatttat---c B D Elephant ------------------aattgtaaaatttattt------ B D Tenrec ------------------ggcggtgaaatgcattt------ B D Guinea pig ========================================= B D Tree shrew ========================================= B D Zebrafish ========================================= B D X. tropicalis ========================================= B D Opossum ========================================= B D Chicken ========================================= Inserts between block 22 and 23 in window B D Pig 29bp B D Dolphin 998bp B D Cow 1bp B D Sheep 2bp B D Horse 1bp B D Chinese pangolin 1bp B D Dog 1bp B D Hawaiian monk seal 1bp B D Hedgehog 1bp B D Shrew 1bp Alignment block 23 of 313 in window, 56746088 - 56746103, 16 bps B D Mouse tctaaattatatgcat------ B D Rat ctta------------------ GCF_003668045 gtttaattaaaaatat------ Beaver cttc------------------ B D Squirrel ctca------------------ B D Rabbit caca------------------ B D Pika cata------------------ B D Human a--------------------- B D Chimp a--------------------- B D Bonobo a--------------------- B D Gorilla a--------------------- B D Rhesus a--------------------- B D Marmoset a--------------------- B D Tarsier a--------------------- B D Bushbaby actg------------------ B D Malayan flying lemur a--------------------- B D Cow -------ttgagtcat------ B D Sheep -------ttgagtcat------ B D Horse ------tttgagtcat------ B D Chinese pangolin ------tttgaatc-------- B D Dog ------tttaagttat------ B D Hawaiian monk seal ------tttaagttat------ B D Hedgehog ------cttgagtcac------ B D Shrew ------tttgagtcat------ B D Elephant ------tctgagttatatgcat B D Tenrec ------tctaactcttatacac B D Guinea pig ====================== B D Tree shrew ====================== B D Zebrafish ====================== B D X. tropicalis ====================== B D Opossum ====================== B D Chicken ====================== B D Pig ====================== B D Dolphin ====================== Inserts between block 23 and 24 in window B D Elephant 114bp Alignment block 24 of 313 in window, 56746104 - 56746122, 19 bps B D Mouse atatataaatatgcat--ata B D Rat ------------------ctt GCF_003668045 gcatatagactta-----ctc Beaver ------------------cat B D Squirrel ------------------tat B D Rabbit ------------------cgg B D Pika ------------------caa B D Human ------------------cat B D Chimp ------------------cat B D Bonobo ------------------cat B D Gorilla ------------------cat B D Rhesus ------------------cat B D Marmoset ------------------cat B D Tarsier ------------------cat B D Bushbaby ------------------caa B D Malayan flying lemur ------------------tgt B D Cow atgca-------------cat B D Sheep atgca-------------cat B D Horse atgca-------------cat B D Chinese pangolin atgca-------------caa B D Dog gtgca-------------cat B D Hawaiian monk seal atgca-------------cat B D Hedgehog a--ca-------------cat B D Shrew atgca-------------cat B D Tenrec --------acaaaccttacgt B D Guinea pig ===================== B D Tree shrew ===================== B D Zebrafish ===================== B D X. tropicalis ===================== B D Opossum ===================== B D Chicken ===================== B D Elephant ===================== B D Pig ===================== B D Dolphin ===================== Inserts between block 24 and 25 in window B D Human 5bp B D Chimp 5bp B D Bonobo 5bp B D Gorilla 5bp B D Rhesus 5bp B D Marmoset 5bp B D Tarsier 5bp B D Bushbaby 5bp B D Cow 9bp B D Sheep 9bp B D Horse 10bp B D Chinese pangolin 10bp B D Dog 10bp B D Hawaiian monk seal 10bp B D Hedgehog 10bp B D Shrew 10bp Alignment block 25 of 313 in window, 56746123 - 56746137, 15 bps B D Mouse atttagcaggcagag B D Rat atttagcaggcagtg GCF_003668045 atttagcaggcagag Beaver atttaatgcatagag B D Squirrel atttaatgtgtacag B D Rabbit atttagtgtgtggag B D Pika atttaatgtctaggg B D Human -----atgt------ B D Chimp -----atgt------ B D Bonobo -----atgt------ B D Gorilla -----atgt------ B D Rhesus -----atgt------ B D Marmoset -----atgt------ B D Tarsier -----acgt------ B D Bushbaby -----aggc------ B D Tree shrew atttaatgt------ B D Pig atttaatgtgcagag B D Cow atttaacgtgtagag B D Sheep atttaatgtgtagag B D Horse atttagtgtgtagag B D Chinese pangolin atttaacatgtagac B D Dog atttaacgtgtagac B D Hawaiian monk seal acttaatgtgtagac B D Hedgehog atttaatacgtagag B D Shrew acttattgtatggag B D Tenrec atttcgcgt------ B D Guinea pig =============== B D Zebrafish =============== B D X. tropicalis =============== B D Opossum =============== B D Chicken =============== B D Elephant =============== B D Dolphin =============== B D Malayan flying lemur --------------- Alignment block 26 of 313 in window, 56746138 - 56746170, 33 bps B D Mouse gcagaagcagagaaagta-----------agga---agtcctgta----------gg B D Rat gc----------gatgta-----------gggt---agtcctgaa----------tc GCF_003668045 ------------aacgtagg---------gggg---ggtcccata----------ta Beaver atag--------catgca-----------gggt---agtttcatg----------ca B D Squirrel agagc-------acagaa-----------gaat---agtcccttg----------ct B D Guinea pig gtagaggcaaagcttgca-----------gagt---agacctagg----------ca B D Rabbit ------------------agggagcatcagggt---agtcctatg----------ta B D Human gtagaggtagtgtatcaa-----------gggg---agccctatg----------ca B D Chimp gtagaggtagtgtatcaa-----------gggg---agccctatg----------ca B D Bonobo gtagaggtagtgtatcaa-----------gggg---agccctatg----------ca B D Gorilla gtagaggtagagtatcaa-----------gggg---agccctatg----------ca B D Rhesus gtagaggtagagtatcaa-----------gggg---agccctatg----------ca B D Marmoset gtagaggtagagtatcaa-----------gggg---agccctatg----------ca B D Tarsier gtagccacagagaaccca-----------gggg---ggtcccttg----------ca B D Bushbaby agagagctagggtaccca-----------ggct---aggc--agg----------ca B D Tree shrew gctgagatacagcagcaa-----------gggc---agtcc---------------- B D Malayan flying lemur gtagagatagagcatcaa-----------gggt---cgtcctatg----------ca B D Pig ------atggagcatcaa-----------gggt---agtcacaca-cggtagacgca B D Cow ------atagagcgcgga-----------gggt---agt------------------ B D Sheep ------atagagcacgaa-----------gggt---agtcaca------------ca B D Horse ------atagagcatcaa-----------gggtttgacccacacagtacac-----a B D Chinese pangolin ------atagagcattaa-----------gggt---agtcacacattaaattatgaa B D Dog ------atagagcattaa-----------gggc---agtcacata-tgaattacgca B D Hawaiian monk seal ------atagagcatcaa-----------aggt---agtcacata-taaattatgca B D Hedgehog ------ctcaagtatcaa-----------gggt---agtcacaca-ggggttatgta B D Shrew ------ct--agtagcaa-----------gg--------------------tatgta B D Tenrec -------------------------------------gtcctagg----------ct B D Pika --------------------------------------------------------- B D Zebrafish ========================================================= B D X. tropicalis ========================================================= B D Opossum ========================================================= B D Chicken ========================================================= B D Elephant ========================================================= B D Dolphin ========================================================= Alignment block 27 of 313 in window, 56746171 - 56746227, 57 bps B D Mouse cacacaacgtgg-gaatctatgtacttagattttgcatatgtattgtg-----ggcatcactt B D Rat catacaatgcgg-gaatctgtgtacttacattttgcataggtattgtg-----ggcatcgctc GCF_003668045 cacacaacgtgg-agatctgtgcatggatattttgcatgcgcattgtg-----ggcgtcattt Beaver cacagaaggtgg-aagtctatgtacagatactttgcatgtgtattgtg-----ggcatcattt B D Squirrel caaacaagttgg-aaatct-------tgcattttgcatgtgtattgtg-----tgcatcattt B D Guinea pig cacacaaggcag-agatccacgcatgtatattttgcacgtgtattgtg-----cacatcattt B D Rabbit cacacaaggtgg-aaatctgtgcacatatattttgcatgtgtattgtg-----ggcatcgttt B D Pika -----------------------------attttgcacgcgcattgtg-----ggcatccttg B D Human cacacaaagcag-aaatctgtgcatgtatattttgcac-tgtatcgtg-----ggaataattt B D Chimp cacacaaagcag-aaatctgtgcatgtatattttgcac-tgtatcgtg-----ggaatagttt B D Bonobo cacacaaagcag-aaatctgtgcatgtatattttgcac-tgtatcgtg-----ggaatagttt B D Gorilla cacacaaagcag-aaatctgtgcatgtatattttgcac-tgtatcgtg-----ggaataattt B D Rhesus cgcacaaagcag-aaatctgtgcacgtatattttgcac-cgtatcgtg-----ggaataattt B D Marmoset catacaaagcag-aaatctgtgaacatatcttttgcac-tgaattgtg-----ggaatcattt B D Tarsier cacacaaagcag--aatctacgcatgtatattctgcatgcgtattgtg-----ggcatcgttt B D Bushbaby ccctcaaaacag-aaatctatgcacatatattttgcatgtatattatg-----gacatcgttt B D Tree shrew cccacaaggcag-acacccactccggtgtagtctgcatgtgtattacg-----ggcatcattt B D Malayan flying lemur cacccaaggtag-aaatctatgcatgtgtattttgcatgtgtattgtg-----ggcatcgt-- B D Pig cacaggaggcag-aaacctacacacctatgttttgca-------tgtg-----ggcatccttt B D Cow ---------cac-acacctatgcatttctgctttgcatgtatattgtg-----ggcatccttt B D Sheep caaggtaggcac-acacctatgcactcatgctttgcatgtatattgtg-----ggcatccttt B D Horse tacacaaggcagaaaacctatgcacttatattttgcatatgtattgca-----ggcatcattt B D Chinese pangolin cacacaaggcag-aaacctatggatgtacattttgcatgtgtgctgtg--------atcattt B D Dog cacacaagacaa-a---ctacgcatgtctattttgcgtgtgtattgtg-----ggcatcatgc B D Hawaiian monk seal cacacaagacaa-a---ctatgcatgtacattttgcatgtgcattgtg-----ggtatcttgt B D Hedgehog cacgcagg-cag-gaatctatgcaggtatattgtgtgtgtatattgtg-----ggcatctttt B D Shrew cacacaggacag-aagcctttgcagggatagtttgcatgtgtattgtgcatgtggcatcattt B D Elephant tactctaggcag-aaacctatgcacgtgtacttggcatgtgtattgta-----ggcaacgttt B D Tenrec taccttctgcag-aaaccgaagcaagcagactttgcatgtatattgta-----ggcttcggtt B D Zebrafish =============================================================== B D X. tropicalis =============================================================== B D Opossum =============================================================== B D Chicken =============================================================== B D Dolphin =============================================================== Alignment block 28 of 313 in window, 56746228 - 56746737, 510 bps B D Mouse agt--tatttgtttgcaaaggactttgcgggtc-ttttgttctgtcttattgacatagctatcagatccc B D Rat agt--tatttgtttgcaaaggactttgcgggcc-ttttgttctgtcttattgacatagctatcagatccc GCF_003668045 agt--tatttgtttgcaaaggactttgcaggtc-ttttgttctgtcgtgttgacagaactatcagatccc Beaver agt--tatttgtttgtaaaggactttgcaggtc-ttttgttctgtc-tattgacataagtaccagatccc B D Squirrel agg--tatttgtttgcaaaggactttgcaggtc-tttcgccctatt-tgttgacataagtaccagatccc B D Rabbit agt--tatttgtttgcaaaggactttgcagat--ctttgttttgtt-tcttggcgtcagttccagacatc B D Pika ggc--ta----tttgcaaaatattttgcaggtc-ctttgttttgtc-ttttggtatacattgcagatact B D Human agt--tatttgtttgcaaaggacagtgcaggtctttttgttc--tc-tattgacataagtaccagatccc B D Chimp agt--tatttgtttgcaaaggactgtgcaggtctttttgttc--tc-tattgacataagtaccagatccc B D Bonobo agt--tatttgtttgcaaaggactgtgcaggtctttttgttc--tc-tattgacataagtaccagatccc B D Gorilla agt--tatttgtttgcaaaggactgtgcaggtctttttgttc--tc-tattgacataagtaccagatccc B D Rhesus agt--tatttgtttgcaaaggactttgcaggtcgttttgttc--tc-tattgacataagtaccagatccc B D Marmoset ag------ttgtttgcaaaggactttgcaggtcattttgttc--tt-tattgacaaaagtgccagatccc B D Tarsier agt--tacttgtttgcaaaggtctttgcaagtcttcttg--------ggttgacataagtaccagatccc B D Bushbaby agt--ta--tgtttgcaaaagactttgcaggtc-ttttgttc-----tattgacataggcactagatccc B D Tree shrew agt--tacttgtttgcaaaggactttacagctc-ttttgttctgtc-ttttgacgtaaacacaagagacc B D Malayan flying lemur --t--tatttgcttgcaaaggactttgtgggtc-ttttgttctatc-tattgatataagcaccagatccc B D Pig agt--tatttgtttgcaaaggactttgcaggtc-ttttgtt-cgtc-tgttgacaaaagtactagatccc B D Cow agt--catttgtttgcaaaagactttacaggtc-ttttgttccatc-tgttgacttaagtactagatccc B D Sheep agt--catttgtttgcagaagactttacaggtc-ttttgtttcatc-tgttgacttaagtactagatccg B D Horse agt--tatttgtttgcaaaggactttgcaagtc-ttttgttccatc-tgttgacataaaaa--------- B D Chinese pangolin agt--tacttgtttgcaaagga----------c-ttttgctccatc-tattgacagaagtactaggtccc B D Dog agt--tatttgtttgcaaaggactttgcaggtc-tttggtc---tc-tgttgacctaagtgcgagatccc B D Hawaiian monk seal agt--tacttgtttgcaaaggactttgtaggtc-ttttgtctcatc-tattgacataagtactagatccc B D Hedgehog agttctacttgtttgcaaaggattttgcaaatc-ttttgttccaac-tgttgacttaaataccagattgc B D Shrew agt--tatttgtttgcaaaggactttgcaggtc-ttttg-tccatc-tgttaacataagtactagaattc B D Elephant agt--tatttgtttgcaaatgatct-gtgggtc-ttttattctatc-tgttgac-----------acagt B D Tenrec agt--ggttggtttgcaaatgacccagcggatc-ttttgttcggtc-tgttgactcacttacccgacctt B D Guinea pig NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN B D Zebrafish ====================================================================== B D X. tropicalis ====================================================================== B D Opossum ====================================================================== B D Chicken ====================================================================== B D Dolphin ====================================================================== Mouse cacagtgtagtgagcatttttc--ag-cctgtctctg------agcatca--gccaggtc-----acact Rat cacagtgtagtgagcatttgtc--ag-gttgtttctg------cgcatca---ccgggtc-----acact GCF_003668045 cacagtgcggtgagcatttttc--ag-gctgtctttg------agcaaga---------c-----acact Beaver cacagagcagtgagc-------------ctgtttctg------gata------------c-----acctt Squirrel cacaatgcactgagcacttttc--ta-gatgtctctg------aacaccaa-gccagg-t-----ac-ct Rabbit cacagcacagtgagc----------------gctctg------agcacgga-tacagg-c-----aa-ct Pika cgcagcgcaaccaga---------------ggctcct------agggtagagtgcagg-c-----ac-ct Human cacagtgcag-------------------------tg------agcaccag-tgcagg-c-----accct Chimp cacagtgcag-------------------------tg------agcaccag-tgcagg-c-----accct Bonobo cacagtgcag-------------------------tg------agcaccag-tgcagg-c-----accct Gorilla cacagtgcag-------------------------tg------agcaccag-tgcagg-c-----accct Rhesus cacagcgcag-------------------------tg------agcaccag-tgcagg-c-----accct Marmoset cacagtgcag-------------------------tg------agcaccag-tgcagg-c-----accct Tarsier cacagtgtagtgagagcactt---tgggatgtctctg------agcagcag-aggcag-c-----acctt Bushbaby cacagcgcaatgagcacttttc--tgcaaagtctctg------aacacca---gcagg-c-----gccct Tree shrew -acagcactgtgaacacttttc--t--gatgtctttg------agcacgcg-cacggg-c-----accct Malayan flying lemur tggagcacagtgagcacttttc--tg-gacgtctctc------agctccag-cacagt-c-----accct Pig cgaggcacagtgagcactcttc--tg-gatgcctctg------agagccag-cacggg-c-----tcagt Cow cacagcacagtgagcact-ttc--tg-gacgtttctg------agagccag-aacagg-c-----atagt Sheep cacagcacagtgaacact-ttc--tg-gacgtttctg------agcgccag-aacagg-c-----atagt Horse --------agtgaggacttttc--tg-aatgtctttg------agcaccag-cacagg-c-----gcggt Chinese pangolin cacagtgcagtgaacacttaac--tg-gatgtctttg------agcaccag-cacagg-c-----tccat Dog cactgcgcggcgagcacttttc--tg-gatgtctcggagcagcagcagcag-cacagg-cccaagacggt Hawaiian monk seal cacagcacggtgagcacttttc--tg-gatgtctctg------agcaccgg-cccagg-ccaaggacggt Hedgehog cacagca----gagcagttttttcta-gatgtctctg------aacacaag-ta-tga-c-----taggg Shrew cgcaataaattgagcacttttt--ta-gatgattctg------agcaccgg-cactgg-c-----agaga Elephant actagcactgtgagcacttttc--tg-gatatctccg------tatgccag-cgcagg-c-----accct Tenrec cccagcatggtgagcactttgc--tg-aacgtctctg------gat--cag-tgcagg-c------ttct Guinea pig NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN Zebrafish ====================================================================== X. tropicalis ====================================================================== Opossum ====================================================================== Chicken ====================================================================== Dolphin ====================================================================== Mouse tgggcca--gg---cctcctc-aac--------------------------------------gtcacct Rat tgggcca--gg---cctcctc-tcttcct--catca----gt----c-----c-tccccactggtcatgt GCF_003668045 taggcca--ct---actcctc-tctcccg--catca----gtcttcc-----c-tccccaat-ggcaggt Beaver tggatct--gg---acgcttc-tctctcgtttttca----gc----c-----t-gctccatt-accagga Squirrel caggtca--gg---gcactcc-tctctccattttca----aa----c-----t-gccacaat-ctcagat Rabbit taggtca--gggtctctcctc-tcttcct--tttta----gt----cctagag-atcccggt-actgcat Pika ----tta--gg-----ttctt-gctgccc--tttca----at----c-----------------cagcat Human taggtca--ga--cgctcctc-tctttct--tttca----gc----c-----a-gccccact-gccaaat Chimp taggtca--ga--cgctcctc-----tct--tttca----gc----c-----a-gccccact-gccaaat Bonobo taggtca--ga--cgctcctc-tctttct--tttca----gc----c-----a-gccccact-gccaaat Gorilla taggtca--ga--cgctcctc-tctttct--tttca----gc----c-----a-gccccact-gccaaaa Rhesus taggtca--ga--cgcccctc-tctttct--tttca----gc----c-----a-gccccact-cccaaat Marmoset taggtcc--gg--cgc-------ctttct--tttta----gc----c-----a-gccccagt-cccaaaa Tarsier taggtca--ga--ctcccccaatctctct--tttca----ag----t-----g------agt-cctagat Bushbaby caggtta-gga--agctgctc-----tct--ttttt----ga----c-----a-gccctagt-cccagat Tree shrew taggtga-gga--tg------------ct--tttca----gt----t-----c-atcatagt-cccaggg Malayan flying lemur caggtca-gga--agctcctc-tttgcct--cttca----gc----c-----c-gccccagt-ctcagat Pig taggcta-gag--cgaccttc-tctccct--tttcagtccgc----a-----c-gcaccaat-ttgagat Cow taggcca-gca--cgaccctt-tctcc-------------------------c-gcaccagt-ctcagat Sheep taggcca-gca--cgaccctt-tctc-------------------------------------------- Horse gaggcca-gga--cactcctc-tctccct--tttca----gt----c-----c-c-----------agac Chinese pangolin taggcca-gga--cgctcccc-tctccct--tttca----gt----c-----c-tcaccaat-gcaggat Dog taggccaggga--cgctcctc-tctcccc--tttcactccgc----c-----c-gcaccagt-cc-ctgt Hawaiian monk seal taggccaaggg--cgctcctc-tctccct--tttca----gt----c-----c-gcaccagt-cc-ccgt Hedgehog tagacca-aaa--cacc--ct-tcttcct--tttca----ac----c-----c-aagccagt-cccaggg Shrew taggcca-gga--cacccacc-tctccct--tttca----gc----c-----t-gcctcagt-cccagat Elephant tagccca-gga--cactcctc-tctccct--ttcca----gc----c-----g-gcgccagt-cctagat Tenrec tagacca-gga--cgtatctc-attccat--gcccc----cc----c-----gcggcccagt-cccagac Guinea pig NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN Zebrafish ====================================================================== X. tropicalis ====================================================================== Opossum ====================================================================== Chicken ====================================================================== Dolphin ====================================================================== Mouse ctttgcctctctc-c--t-------------------ttag-----tagg------------------g- Rat ctttgccactctc-c--t-------------------tcag-----tagg------------------g- GCF_003668045 ctttgccactctc-c--t-------------------ccag-----taag------------------g- Beaver ttttatcactctcgc--t-------------------ccag-----tcggtcctgtgttagtactggag- Squirrel ctttgccacctcc-c--t-------------------ccag-----ttcg------------------c- Rabbit ctttgtcagtctc-cagt-------------------ccag-----cctg------------------g- Pika ctttgtccatttc-caac-------------------gtag----ccctg------------------a- Human tgttgtcaacccc-cagt-------------------cggc----cttgg------------------g- Chimp cgttgtcaacccc-cagt-------------------cggc----cttgg------------------g- Bonobo cgttgtcaacccc-cagt-------------------cggc----cttgg------------------g- Gorilla cgttgtcaacccc-cagt-------------------cggc----cttgg------------------g- Rhesus cgttgtcaacccc-cagt-------------------cggc----cttgg------------------g- Marmoset cgttgtcaacccc-cagt-------------------cggc----cttgg------------------gt Tarsier ctttgtcaa-ccc-tggt-------------------tggc----cttgg------------------g- Bushbaby ctttgtcaaccca-gagt--------------------ggc----cttgg------------------g- Tree shrew cct-------ccc-tcct-------------------catcctcacctct------------------g- Malayan flying lemur catagttaacccc-cagt-------------------cggtcgc-cctgg------------------g- Pig ttttgtcaacccc-cagtggatcctgggttaggattgggac----cctgg------------------g- Cow ttttgtcaacccc-cagt-------------------cgac----cctgg------------------g- Sheep ---------cccc-cagt-------------------cgac----tctgg------------------g- Horse tcttgtgaagccc-cagt-------------------cggc----cctgg------------------g- Chinese pangolin ttttgtcaactcc-caga-------------------cgac----cctgg------------------g- Dog ttcctgc-ctccc-gagt-------------------cgac----cccgg------------------a- Hawaiian monk seal tttcgtcaatccc-gagt-------------------cgac----cctgg------------------g- Hedgehog ttatg---------gagt-----------------------------tgg------------------g- Shrew cttt----------------------------------------------------------------g- Elephant ctttgtcagtcct-cact-------------------cggc----cctgg------------------g- Tenrec tttggccggttcc-cacc-------------------cggg----cctgg------------------g- Guinea pig NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN Zebrafish ====================================================================== X. tropicalis ====================================================================== Opossum ====================================================================== Chicken ====================================================================== Dolphin ====================================================================== Mouse --acagagatgagga--acaga----tatc---------------c------cac-ttca---------- Rat --acagaggtaagga--acaaa----tatc---------------c------ca--ttta---------- GCF_003668045 --acaggggtgatga--attaa----tatc---------------c------aac-ttca---------- Beaver --aaagagagaatgg-----gg----catc---------------c------aac-ctca---------- Squirrel --cccaggttaaagaaaaaagg----tatt---------------c------aac-ctca---------- Rabbit --attaggatgggcg-agttgg----gaac---------------a------gcg-catc---------- Pika --gttaggatgggga-ggtgga----gaag---------------c------aag-cgcg---------- Human --ttaagaatgagga-ggtgga----gaac-----ggcacgt--gc------agc-ctta---------- Chimp --ttaagaatgagga-ggtgga----gaac-----ggcacgt--gc------agc-ctta---------- Bonobo --ttaagaatgagga-ggtgga----gaac-----ggcacgt--gc------agc-ctta---------- Gorilla --ttaagaatgagga-ggtgga----gaac-----ggcacgt--gc------agc-ctta---------- Rhesus --ttaagaatgagga-ggtgga----aaac-----ggcgcgt--gc------agc-ctta---------- Marmoset tattaagactgagga-ggtaga----gaacccgcgggcgcgt--gc------agc-ctta---------- Tarsier --ttaggactgagga-ggtgga----gaat-----ggcctga--cc------agt-ctca---------- Bushbaby --ttaagattgagga-ggtgga----gaat-----ggcgtgt--cc------agc-ctct---------- Tree shrew --cca----tgaggg-ggtaga----gcag-----aatgcat--cc------aac-ttta---------- Malayan flying lemur --ttaggattgggga-ggtgaa----gaag-----ggcccat--ct------agc-ctca---------- Pig --ttaggactgggga-----------gaat-----ggcgcat--cc------agt-ttca---------- Cow --ttaggactgagga-----------gaac-----agcgcgt--cc------agt-ttca---------- Sheep --ttagtactgggga-----------gaac-----ggggcgt--cc------agt-ttca---------- Horse --tcagggtgggga------------gaac-----cacgcat--cc------gac-ttca---------- Chinese pangolin --tcaggattgggat-----------gaac-----agggcat--cc------aac-ttca---------- Dog --cgaggactgggac-----------gagc-----ggcgcgt--cc------agc-ttcg---------- Hawaiian monk seal --ttaggactgggac-----------gaac-----agcgcat--cc------agc-ttca---------- Hedgehog --ttaga-------------------gaac-----agcattt--cc------agc-ttcag--ggtttgt Shrew --tcagc-------------------cacc-----aatcgtc--ccccgggtagcattcagcaggaaaat Elephant --ttagtattgagga-ggaggaggaagaat-----atggtgcatcc------agc-ctca---------- Tenrec --ttcgtcctgggga-ggacaag---aaat-----gtggcgc--tc------agc-ctaa---------- Guinea pig NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN Zebrafish ====================================================================== X. tropicalis ====================================================================== Opossum ====================================================================== Chicken ====================================================================== Dolphin ====================================================================== Mouse ---------caactttggg--tttttct------tc-tgtttgg-----------gggga---------- Rat ---------caggtttggatttttttct------tc-tgtttgg-----------gaaaa---------- GCF_003668045 ---------caactctggg-ttctttct------tc-catttgg-------------------------- Beaver ---------c------ggg-ttctttct------tc-aatttgg-------------------------- Squirrel ---------c------agg-ttctttctatgaggtt-cattcgg-------------------------- Rabbit ---------c------agc-ttctgtcc------ca-gatttgg-------------------------- Pika ---------c------agg-c----acc------ca-gatttgg-------------------------- Human ---------a------ggg-ttccttct------cc-gattt---------------------------- Chimp ---------a------ggg-ttccttct------cc-gattt---------------------------- Bonobo ---------a------ggg-ttccttct------cc-gattt---------------------------- Gorilla ---------a------ggg-ttccttct------ct-gattt---------------------------- Rhesus ---------a------ggg-ttccttcc------cc-tattt---------------------------- Marmoset ---------a------gag-ttccttc-------ct-gattt---------------------------- Tarsier ---------c------gag-ctctttcc------tc-gattt---------------------------- Bushbaby ---------g------gac-ttctttcc------ccagattt---------------------------- Tree shrew ---------a------agg-ttatttct------ct-gatttgg-----------agaaatttgggaaaa Malayan flying lemur ---------c------ggg-ttctttcc------tt-gatttgg-----------gaaaatttggg-aaa Pig ---------c------ggg-ttctttcc------cc-gatttgg-----------gaaaagtt------- Cow ---------c------gcg-ttctttcc------cc-gatttga-----------gaaaattc------- Sheep ---------c------gcg-ttctttcc------cc-gatttaa-----------gaaaattc------- Horse ---------c------gga-ttctttcc------ca-gatttgg-----------gaatactg------- Chinese pangolin ---------c------ggg-ttctttcc------tc-gatttgg-----------gaaaac--------- Dog ---------c------gtg-ttcgttcc------tc-gatttag-----------gaaaac--------- Hawaiian monk seal ---------c------gtgtttcattcc------tc-gatttag-----------gaaaac--------- Hedgehog ttgttttt-t------gtt-ttttttcc---------tgttgtg-----------ggaatgtt------- Shrew ctgcttccac------agg-ttcattcc---------gactggg-----------gaaaattt------- Elephant ---------a------ggg-ttctttcc------ct-gatttgggagaatattgaggaaattt------- Tenrec ---------c------agg-ttcttttt------cc-cactcgg-----------agaaattt------- Guinea pig NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN Zebrafish ====================================================================== X. tropicalis ====================================================================== Opossum ====================================================================== Chicken ====================================================================== Dolphin ====================================================================== Mouse -----aa--------------aaaaaa----------------------------------ccctctttc Rat -----ac--------------aaacaaacaaacaacaaacaaaaatcaaaacaagactc--ctctctttc GCF_003668045 -----aa--------------aaatat------------------------------tc--gtctctttc Beaver -----ag--------------aaatta------------------------------tcgggtttctttc Squirrel -----ga--------------aaattc------------------------------tca-atttcttcc Rabbit -----ga--------------aaacgc------------------------------tcgggtttctttc Pika -----gaaactctgagggggcaaaacc------------------------------tcagattttctcc Human -----ag------------------------------------------------------gtttcttcc Chimp -----ag------------------------------------------------------gtttcttcc Bonobo -----ag------------------------------------------------------gtttcttcc Gorilla -----ag------------------------------------------------------gtttcttcc Rhesus -----ag------------------------------------------------------atttcttcc Marmoset -----gg------------------------------------------------------gtttcttcc Tarsier -----gg------------------------------------------------------gtttctacc Bushbaby -----gg------------------------------------------------------gtttcttcc Tree shrew ctctcag------------------------------------------------------atttcttcc Malayan flying lemur ctctcag------------------------------------------------------gtttcttgc Pig -----gg--------------gggaaa---------------------------ctctcgggttccttcc Cow -----gg--------------gggaaa--------------------------attttcagattccttcc Sheep -----gg--------------gggaaa----------------------------cttcagattccttcc Horse -----gg--------------gggcaa---------------------------ctttcaggccccttcc Chinese pangolin ---------------------------------------------------------tcaggttccttcc Dog -------------------------------------------------------tctcaggttccttcc Hawaiian monk seal -------------------------------------------------------tctcaggttccttgc Hedgehog -----tg------------tagagaaa---------------------------ctttctgactcttctg Shrew -----tg--------------ggaaaa---------------------------ctcctgggttctttcc Elephant -----gg--------------gaaatc----------------------------tcccaggtttcttcc Tenrec -----gg--------------aaaatc----------------------------tctccggtttctttc Guinea pig NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN Zebrafish ====================================================================== X. tropicalis ====================================================================== Opossum ====================================================================== Chicken ====================================================================== Dolphin ====================================================================== Mouse aat--cc-attccct--ggga----------gatcaagaagggagaaaggaaatc-taatgctgacttag Rat aat--cc-gttccct--ggga----------gatcaaggaggaagaaagaaaatc-taatgctgccttag GCF_003668045 aac--cc-attccct--gaga----------gatcaagaagggagaaaggaaatc-taacgctggtttaa Beaver act--tg-tttccct--gagt----------taccaagggcagag---ggaaatc-aaaggccagttgaa Squirrel ac----------------------------------ggaaaggaggagggaaatc-cagggctgcttgaa Rabbit actcgct-ttcctcg--gggt----------agtgaagaggggaggagggaaatc-gaaggttagcagaa Pika actaaca-gtcttcg--gaga----------agcgcagaggggagctgggaaatc-gaaggttggtggga Human act--cc-tttgccc--tggg----------agagcaaaggggcgaagggaaatc-aaaaaccggttga- Chimp act--cc-tttgccc--tggg----------agagcaaaggggcggagggaaatc-aaaaaccggttga- Bonobo act--cc-tttgccc--tggg----------agagcaaaggggcggagggaaata-aaaaaccggttga- Gorilla act--cc-tttgccc--tggg----------agagcaaaggggcggagggaaatc-aaaaaccggttga- Rhesus act--cc-tttgccc--tggg----------agagcggagggtcggagggaaata-aaatactggttga- Marmoset act--cc-tttgccc--tggg----------agagcggaggagtggagggaaagc-aaagaccggttga- Tarsier acc--ca-tttccgc--gtgg----------agtgaggagggatggagggaaatc-aagggctgattgaa Bushbaby act--tt-tttcctt--gggg----------attgaggaggggaggagggaaatc-aaagtctggttgaa Tree shrew act--ta-ttccctg--gggg----------agccaaaaggggaggagggaaact-gaaggctgattga- Malayan flying lemur act--tgttttccca--ggga----------atcgaggaggggaggagggatata-aaaaaccggttga- Pig att--cg-ttttccc-cgggg----------agagaggatgggaaga-agaaacc-aaaggccggcccg- Cow act--cg-ttt-ccc-agggg----------agcgaggacgggagga-ggtaatc-aaaggccgttggg- Sheep act--cg-tttcccc-agggg----------agcgaggatgggagga-ggtaatc-aaaggccggttaa- Horse act--ca-tttcccc--ggga----------agcgaggag-ggagga-ggaactc-aaaggccggttga- Chinese pangolin act--cg-tttcccttggggg----------agcgaggag----ggg-agaaatc-aaatgcaggctga- Dog att--cg-cttcccc-ggggg----------aacaaggagaggagga-gggaatc-aaaggcttttgaa- Hawaiian monk seal att--cg-atttccc-ggggg----------aatgaggaggggagga-ggaaatc-aaaggctgttgaa- Hedgehog act--tt-gtggtgc---act----------a------agaggggga-ggaaatc-taaggtctgttga- Shrew act--tg-tttcccc-agact----------agcgaggaggggagga-agaagccaaaaggccagatga- Elephant act--cg-ttttccc--gggggagcgaggacagaaggaggaggagga-aaaaatc-aaaggccggtaga- Tenrec act--cc-ttgtcac--ggagaa--------agccgggcaaggagga-ggaactc-aaagaccagtgggg Guinea pig NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN Zebrafish ====================================================================== X. tropicalis ====================================================================== Opossum ====================================================================== Chicken ====================================================================== Dolphin ====================================================================== Mouse gaa---aagaaag--aaaggg---g-aaa---------a---aattaaaaaacaaaaacacttcagtcag Rat gaaacgaagaaaggaaaaaaa---a-aaa---------a---aaaaaaaaaaaaaaaaaacatccgccag GCF_003668045 aaa------------aaataa---a-aca---------a---aacaaagcaaaacaaaa--ttccgtcag Beaver aac------------gaagaa---a-aaa---------a---aa-----------aaaatcttcctgcag Squirrel aac------------aaaagg---c-aaa---------acccaccaaaatcccaaacgatcttcacgcag Rabbit aa-----------------gg---g-aaa---------a-----------------ctgtcttcttgcaa Pika aag------------gagggg---g-gga---------g-----------------ggagcttctcccag Human ---------------aaaaga---a-aaa---------a-----------------gtgtcttccctcag Chimp ---------------aaaaga---a-aaa---------a-----------------gtatcttccctcag Bonobo ---------------aaaaga---a-aaa---------a-----------------gtatcttccctcag Gorilla ---------------aaaaga---a-aaa---------a-----------------gtatcttccctcag Rhesus ---------------aaaaga---a-aaa---------a-----------------atattttccctcag Marmoset ---------------aaaaga---a-aaa---------a-----------------atatcttccctcag Tarsier aaa---taagaaattaaaaaa---a-aaa---------a-----------------aaatcttccctcag Bushbaby aaa---g--------aaaaaa---a-aaa---------a-----------------aaatcctcccgcag Tree shrew ---------------aaaaaa---a-aat---------t-----------------a---------gaag Malayan flying lemur ---------------aaaaga---a-aaa---------a-----------------a-atcctcccacag Pig ---------------aaaaag------aa----aaaaaa-----------------gtatcttcctgcgg Cow ---------------ggtggg---g-ggg----ggggga-----------------atgtcttcccgcgg Sheep ---------------aaaaagaaaa-aaa----aaaaaa-----------------atgtcttcccgcgg Horse ---------------aaaaga---a-aaa---------g-----------------cggcctcctggcag Chinese pangolin ---------------aaaaga---a-aaataaaaaatga-----------------aaaccttcccgcag Dog ---------------aaaaag---g-ggg--------aa-----------------accccttcccgcag Hawaiian monk seal ---------------aagggg---g-ggg----gaaaaa-----------------aaatcttcccgcag Hedgehog ---------------aaaaga---a-aaa-----------------------------aatatctcgcag Shrew ---------------aaagga---atcaa-----------------------------attctctcgcag Elephant ----------------aaaaa---a-aaa---------a-----------------aaatctccccacag Tenrec gtgcggggg------tggggg---g-aca---------a-----------------ctttctacccacag Guinea pig NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN Zebrafish ====================================================================== X. tropicalis ====================================================================== Opossum ====================================================================== Chicken ====================================================================== Dolphin ====================================================================== Mouse gcgtgggtgaaacttaactc----aggcctactt--ttaggcc-gttaaaacg-tctcc-aggccctaga Rat gagtgggtgaaacttaactc--agaggcctactt--tcaggcc-attaaaact-tctcc-aggccctagc GCF_003668045 gcgtgggtgaaacttaactc--acaggcctactt--tcaggcc-attaaaact-tctcc-aggccctaag Beaver gcatgagtgaaac--aactc--agaggcctactc--tcaagcg-agaaaacct-tcagc-aggccctagg Squirrel gcaggggtggaac--gactcagagaggcctactc--ttaggcg-agtacaact-ttact-aggtcctggg Rabbit gcac-----------gactg--gaaggcctggtc--tcaggcg-aggcgaact-tcacc-aggccccggg Pika gcgc-----------cgcgg--aaaggcctcttt--tcaggag-agtgacact-tggcc-ag---ccacg Human gcgtgggtcagag--aatttggaaaggcctactc--tgagggg-agtaaaact-tcacc-aggccctggg Chimp gcgtgggtcagag--aatttggaaaggcctactc--tgagggg-agtaaaact-tcacc-aggccctggg Bonobo gcgtgggtcagag--aatttggaaaggcctactc--tgagggg-agtaaaact-tcacc-aggccctggg Gorilla gcgtgggtcagag--aatttggaaaggcctactc--tgagcgg-agtaaaact-tcacc-aggccctggg Rhesus gcgtgggtcagag--aatttggaaaggcctactc--tcaggca-agtaaaact-tcacc-agg-cctggg Marmoset ac----gtcagat--aactcggaaaggcctgcat--tcaggcg-agtaaagct-tcacc-aggccctggg Tarsier gcgtgggtgacag--aattcggggaggcctactc----aggcg-agcaaaact-tcacc-aggccctgga Bushbaby gcgtgggtgagag--aacttggagaggcctactc--tcaggcg-agtgaaact-tctcc-aggcctgggg Tree shrew acttgggagagaa--cgcggagagagatctattc--tcaaagg-aataaaacttccgcc-gggtcgccag Malayan flying lemur gcgtaggtgagag--acctcggagaggccta--c--tcaggag-agtaaagctcttgtc-aggccgtggg Pig cctgggggc-gag--agctgggagaggcctactc--cgaggcg-ggt-cacct-tcgcc--ggccctggg Cow gcgtggggcagag--agcggggagaggcctactc--cgaggc---gt-cacct-gggcc-ggggcctggg Sheep gcgtggggcagag--agcggggagaggcctactc--cgaggc---gt-cacct-gggcc-gggccctggg Horse gcgtgggtgagag--agctgggaaaggcctac-c--cgaggcg-agt-ccgct-ccacc---agcccggg Chinese pangolin gcgtgggtaagag--agctgagagaggcctactc--tggggcg-agc-aaatt-tcacccggggtctggg Dog gcgtgggggagag--cgctgggagaggcctacgc--cgagggg-cgt-gaact-gcgcc-ggggcccggg Hawaiian monk seal gcgtgggtgaaag--agctgggagaggcctactc--tgaggag-agt-aaact-tcgcc-gggccctggg Hedgehog gggtgggcgtgag--ctctcagagagagcttttt--------------------tctca--------gtg Shrew gcctttgtgagag--agctgggagaggcccacttagagaggcg-agt-gcacg-tccca--ggccttgcg Elephant gcgtgggggaaaa--agcttggcagggcctactc--tgaggag-tgtaaaaat-ccacccaggccctgga Tenrec gggtg----------agtttggcgaggcctactc--cgaggcgaaataaaagt-tcccccaggcctgagg Guinea pig NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN Zebrafish ====================================================================== X. tropicalis ====================================================================== Opossum ====================================================================== Chicken ====================================================================== Dolphin ====================================================================== Mouse -ctgaaa---actg----aggagtctatgcttaggcccagcg-tc----cctaggaggc--------cta Rat -ctgaaa---acag----aggagtctgcgcctaggcccagcg-tc----cttaggaggc--------cta GCF_003668045 -ctgaaa---accg----agaggtctacccttgggcccagcg-cc----ggtaggaagc--------cta Beaver -ctgaca---gcag----acgaggcagcagctgggctcagcg-tt----cctgggaggc--------cta Squirrel -ctgtga---gtgg----tggaggccgcagatggccacaggg-ac----cctctgggccaccctcttccc Rabbit ----------------------------ggctggtgtcggc--cc----ccggcgatgc--------cga Pika ----------------------------ggctggc----------------------------------- Human -ctggaa---gcac----aggaggtcgcggctgggcccagcg-cc----ctcgggaggc--------caa Chimp -ctggaa---gcac----aggaggtcgcggctgggcccagcg-cc----ctcgggaggc--------caa Bonobo -ctggaa---gcac----aggaggtcgcggctgggcccagcg-cc----ctcgggaggc--------caa Gorilla -ctggca---gcac----aggaggtcgcggctgggcccagcg-cc----ctcgggaggc--------caa Rhesus -ttggaa---gcac----aggaggtcgcggctgggcctagcg-cc----ctcgggaggc--------caa Marmoset -ctggaa---gcaccggacggaggtcgcggctgggcccagcg-cc----ctcgggagac--------cga Tarsier -ctggaa---gcag----aggaggccgcggctggaccccgcgccc----ctggggaggc--------ctt Bushbaby -ctgg-----------------ggctgtaactgggcccagcg-tc----c-gagcaggc--------tta Tree shrew -ctagaa---gctg----agaaggtcctggctg------gtg-ct----cttgggaggc--------cta Malayan flying lemur -ctggaa---gc-g----gggagaccgcggctgggcccagcg-tc----cctgggaggc--------cta Pig -ctgcca---gcgg----gagagacccggcccgcgcc------------cccgggaggc--------cga Cow -ctgccg---gccg----gagaggtgggccccgcgcc------------cctgggaggc--------gga Sheep -ctgccg---gccg----gagaggcgggccccgcacc------------ccttggaggc--------gga Horse -ccggga---g-cg----gagaggcggcgcccgggcccagcg-c-----cccgggaggc--------cga Chinese pangolin -ctggaa---gccg----gaaaggccgcgcctgggcccggcg-c-----cccgggaggc--------tga Dog -ctgcga---gccg----ccgaggccgcg--------------------cccgggaggt--------cgg Hawaiian monk seal cctggaa---gccg----gcgaggccgcgcctgggcccggcg-cc----cccgggaggt--------cga Hedgehog -ttacaaactgtca----c-tagac----cctggacaccgta-ctcctgcctgggaggc--------ca- Shrew -ctggaa---gtca----g-ggggccctgcctgggtcccgcg-ct----cctgggaggc--------caa Elephant -ctggaa---gcgg----aggaggccgcggttgggcccagag-cc----cctgggaggc--------cga Tenrec -ctagaa---tcga----aggaggagacggctggggcccgcg-tc----cccgggagtt--------cga Guinea pig NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN Zebrafish ====================================================================== X. tropicalis ====================================================================== Opossum ====================================================================== Chicken ====================================================================== Dolphin ====================================================================== Mouse g----ttcaggggagttgaccaaaggtcttagcctagga---------ccttt--gt------------- Rat g----tgcaggggagtggaccaaaggtcttagcctagga---------ccttt--gtggtaggggatt-c GCF_003668045 g----tgca-aggagttgacccaaggtcttagccctgaa---------gcttt--gtggttagggatt-c Beaver g----cgca-gggggcccaccggaggttttagccccaga---------gctta--gtggtcacgggtt-c Squirrel g----cccccgggagc--acccgggttgctgggctagg----------------------------tt-c Rabbit g----ggca-gggggcctagccgaggtcgcggg---------------------------------tg-c Pika ----------ggagtcctggccgaggtcggg--------------------------------------- Human g----ggca-gggagccgacccaaggtctaagccctcca---------gctct--c-cgtcgcgggtt-t Chimp g----ggca-gggagccgacccaaggtctaagccctcca---------gctct--c-cgtcgcgggtt-t Bonobo g----ggca-gggagccgacccaaggtctaagccctcca---------gctct--c-cgtcgcgggtt-t Gorilla g----ggca-gggagccgacccaaggtctaagccctcca---------gctct--c-cgtcgcgggtt-t Rhesus g----ggca-gggggccgacccaaggtcttagccctcca---------gctct--c-cgtcgcgggtt-t Marmoset g----ggca-gggggccgacccaaggtctgagccctcga---------gctct--ctcgtcgcttact-t Tarsier g----ggc---ggggcggacccgaggtctgagctctcat---------gctct--cgggtcgcgggtt-c Bushbaby gggaaggca-gggggtccacccgaggccggagtccaggc---------gcttt--ctaggctaggatt-c Tree shrew g----ggca-aatagacgatccgagatcggagctctagt---------gctct--ctgatcgagggtt-c Malayan flying lemur g----ggca-gg-ggctgaacgtcggtcagagccctcga---------gctct--ctggtcgcagact-c Pig g----ggca-gggggccga-ccgaggtcgcaagcctcgc---------gctcg----------------c Cow g----ggca-gggggccga-ccgaggtcgcggccctggc---------gctcg----------------c Sheep g----ggca-gggggccga-ccgaggtcgcggccccggc---------gctcg----------------c Horse g----ggca--ggggccg--ccgaggtccgggcgcgggt---------gctcg----------------c Chinese pangolin g----ggca-gggggccg--acgaggtcggagcccttgt---------gctca----------------c Dog g----ggca-------------ggggtcggcgccccgga---------gctcg----------------c Hawaiian monk seal g----ggca-------------ggggtcggagccctgga---------gctcg----------------c Hedgehog -----------------gc-acaaggtgggggggcagtgtcaaccaaggtcagcccaagtgcctgctgcc Shrew g----ggca-------ggc-acgaggcaaaggacctggg-------agactag----------tattg-c Elephant g----ggca-gggggccgacccgaggtcggagtcctcgt---------gccct--ctggtcttgggtt-c Tenrec a----ggca-gggggtcgccccaaggtcgg---------------------------------ggctt-c Guinea pig NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN Zebrafish ====================================================================== X. tropicalis ====================================================================== Opossum ====================================================================== Chicken ====================================================================== Dolphin ====================================================================== Mouse -ggtctt Rat gggtctt GCF_003668045 gggtgtt Beaver gggtcgc Squirrel cggccgc Rabbit gggtctc Pika ------- Human gggtccc Chimp gggtccc Bonobo gggtccc Gorilla gggtccc Rhesus gggtccc Marmoset gggtccc Tarsier aggtcct Bushbaby cggtccg Tree shrew gggtccc Malayan flying lemur gggtccc Pig gggtggg Cow gggtcgc Sheep gggtcgc Horse ggggggc Chinese pangolin aggtcgc Dog cggtcgc Hawaiian monk seal gggtcgc Hedgehog ggaccct Shrew gggtcac Elephant gggtcca Tenrec gggtcct Guinea pig NNNNNNN Zebrafish ======= X. tropicalis ======= Opossum ======= Chicken ======= Dolphin ======= Inserts between block 28 and 29 in window B D Pig 13bp B D Cow 13bp B D Sheep 13bp B D Horse 13bp B D Chinese pangolin 13bp B D Dog 13bp B D Hawaiian monk seal 13bp B D Hedgehog 13bp B D Shrew 13bp Alignment block 29 of 313 in window, 56746738 - 56746741, 4 bps B D Mouse gtct B D Rat gtct GCF_003668045 gtct Beaver gtct B D Squirrel gtct B D Rabbit gtct B D Pika gtct B D Human gtct B D Chimp gtct B D Bonobo gtct B D Gorilla gtct B D Rhesus atct B D Marmoset gtct B D Tarsier gtct B D Bushbaby gtct B D Tree shrew ttct B D Malayan flying lemur ctct B D Pig gtct B D Dolphin gtct B D Cow gtct B D Sheep gtct B D Horse gtgt B D Chinese pangolin gtct B D Dog gtct B D Hawaiian monk seal gtct B D Hedgehog cttt B D Shrew gtct B D Elephant gtct B D Tenrec gtct B D Guinea pig NNNN B D Zebrafish ==== B D X. tropicalis ==== B D Opossum ==== B D Chicken ==== Alignment block 30 of 313 in window, 56746742 - 56746761, 20 bps B D Mouse c-aggaggggg--gcg----cg-ggttg B D Rat c-aggaggggg-cgcg----cg-ggttg GCF_003668045 c-aggaggggg-cgcg----cg-ggttg Beaver c-aggaggggggcgcg----cg-ggtta B D Squirrel c-cggaggggggcaag----cg-ggcag B D Rabbit c-aggaggggg-cgcg----cg-ggttg B D Pika t-tgga---------g----cg-ggttg B D Human c-aagagtggggcgcg----cg-ggctg B D Chimp c-aagagtggggcgcg----cg-ggctg B D Bonobo c-aagagtggggcgcg----cg-ggctg B D Gorilla c-aagagtggggcgcg----cg-ggctg B D Rhesus c-aagagtggggcgcg----cg-ggctg B D Marmoset c-atgagtggggcgtg----cg-ggctg B D Tarsier c-aggagggggacgcg----cgcggctg B D Bushbaby c-cggaggggggcgcg----ca-gttgg B D Tree shrew c-aggagtggggcgcg----cg-agttg B D Malayan flying lemur c-gggaagggggcgcg----cg-ggtcg B D Pig c-aggaggggg-cgcg----c--ggttg B D Dolphin cgagggagggg-cgcg----c--ggtta B D Cow c-aggaggggg-cgcg----c--ggtcg B D Sheep c-aggaggggg-cgcg----c--ggtcg B D Horse c-aggcggggg-cgc-----ag-ggtcg B D Chinese pangolin c-aggaggggg-cgct----cg-ggttg B D Dog c-cggaggggg-cgcg----cg-ggtcg B D Hawaiian monk seal c-aggaggggg-cgcg----cg-ggttg B D Hedgehog g-gggtgtggg-ggtgggtagg-ggtga B D Shrew c-aggaggggg-cgcg----ct-ggtgg B D Elephant c-tggagggag----g----tt-gg--- B D Tenrec c-tggagggag----g----ct-g---- B D Chicken c-aggaggcga--ggg----ac-ggctg B D Guinea pig NNNNNNNNNNNNNNNNNNNNNNNNNNNN B D Zebrafish ============================ B D X. tropicalis ============================ B D Opossum ============================ Alignment block 31 of 313 in window, 56746762 - 56746780, 19 bps B D Mouse a----a-c-ccccgc-------ct-------gaaatttc B D Rat a----g---ccccgc-------ct-------gaaatctc GCF_003668045 a----g--------c-------ct-------gacaactc Beaver g----tgc-ctcagc-------ct-------gaca--tc B D Squirrel g----c-c-atcagc-------tt-------gaca--tc B D Rabbit g----g-ctaccaac-------ct-------gaca--cc B D Pika g----a-c-acccac-------ct-------gata--cc B D Human g----g-cctccggc-------ct-------gaca--cc B D Chimp g----g-cctctggc-------ct-------gaca--cc B D Bonobo g----g-cctccggc-------ct-------gaca--cc B D Gorilla g----g-cctccggc-------ct-------gaca--cc B D Rhesus g----g-cctccggc-------ct-------gaca--cc B D Marmoset g----g-cctccggc-------ct-------gaca--cc B D Tarsier g----g-cttccagc-------ct-------gaca--cc B D Bushbaby g----a-cctccagc-------ct-------gaca--cc B D Tree shrew g----g-cctccagc-------ct-------gaca--cc B D Malayan flying lemur g----g-cctccagc-------ct-------gaca--cc B D Pig g----c-cctcggac-------ct-------gatg--cc B D Dolphin g----c-cctccagc-------ct-------gacg--cc B D Cow g----c-cctacagc-------ct-------gacg--gc B D Sheep g----c-cctccagc-------ct-------gacg--gc B D Horse g----a-gctccggc--------t-------gacg--cc B D Chinese pangolin g----a-cctccagc--------g-------g--g--tc B D Dog g----c-cctcccgc-------tt-------gacg--cc B D Hawaiian monk seal g----a-tctccagc-------tt-------gacg--cc B D Hedgehog atactc-tgcttgga-------ctccagttggatg--ct B D Shrew a----c-tgcgtggc-------ct-------gacg--cc B D Elephant -----g-gctccggt-------ct-------gatg--cc B D Tenrec ----------------------------------a--cc B D Opossum ------aacttctgc-------ct-------t-----tt B D Chicken ------ccccttagctctacctct-------aacc--cc B D Guinea pig NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN B D Zebrafish ======================================= B D X. tropicalis ======================================= Alignment block 32 of 313 in window, 56746781 - 56746944, 164 bps B D Mouse tcttccac--cttct--caggagtgagcgacagctccccctaccacagccccaaggtggaggagtggagc B D Rat ccttccac--cttct--caggagtgagcgacagctccccctaccacagccccaaggtggaggagtggagc GCF_003668045 tcttccac--cttcc--taggagtgagcgatagctccccctaccacagccccaaggtggaggagtggagc Beaver ttgtcctc--cttcg--caggagtgagcgacagctccccctaccacagccccaaggtggaggagtggagc B D Squirrel ttctcctc--cttcc--caggagtgagcgacagctccccctaccacagccccaaggtggaggagtggagc B D Rabbit ttctcctc--ctt-c--caggagtgagcgacagctccccctaccacagccccaaggtggaggagtggagc B D Pika ctctcccg--cttcc--caggagtgagcgacagctccccctaccacagccccaaggtggaggagtggagc B D Human ctctctt---ctctc--catcagtgagcgacagctccccctaccacagccccaaggtggaggagtggagc B D Chimp ctctctt---ctctc--catcagtgagcgacagctccccctaccacagccccaaggtggaggagtggagc B D Bonobo ctctctt---ctctc--catcagtgagcgacagctccccctaccacagccccaaggtggaggagtggagc B D Gorilla ctctctt---ctctc--catcagtgagcgacagctccccctaccacagccccaaggtggaggagtggagc B D Rhesus ttctctc---ctctt--cagcagtgagcgacagctccccctaccacagccccaaggtggaggagtggagc B D Marmoset ttctcttc--ctctc--cagcagtgagcgacagctccccctaccacagccccaaggtggaggagtggagc B D Tarsier ttctcctc--ctctc--caggagtgagcgacagctccccctaccacagccccaaggtggaggagtggagc B D Bushbaby tctcctc---ctccc--caggagtgagcgacagctccccctaccacagccccaaaatggaggagtggagc B D Tree shrew ttctcctc--ctccc--caggagtgagcgacagctccccctaccacagccccaaggtggaggagtggagc B D Malayan flying lemur ttctgctc--cttcc--caggagtgagcgacagctccccctaccacagtcccaaagtggaggagtggagc B D Pig ctctcctc--ctccc--caggcgtgagcgacagctccccgtaccacagccccaaggtggaggagtggagc B D Dolphin ctctcctc--ctccc--caggagtgagcgacagctccccctaccacagccccaaggtggaggagtggagc B D Cow ctctcctc--ctcccctcaggagtgagcgacagctccccctaccacagccccaaggtggaggagtggagc B D Sheep ctctcctc--ctccccccaggagtgagcgacagctccccctaccacagccccaaggtcgaggagtggagc B D Horse ttctcctc--ct-cc--cagcagtgagcgacagctccccctaccacagccccaaggtggaggagtggagc B D Chinese pangolin ttcttctc-----cc--caggagtgagcgagagctccccctaccacagccccaaggtggaggagtggagc B D Dog ttcttctc--ctccc--caggcgtgagcgacagctccccctaccacagccccaaggtggaggagtggagc B D Hawaiian monk seal tcctcctc--ctccc--caggcgtgagcgacagctccccctaccccagccccaaagtggaggagtggagc B D Hedgehog ttctcttc--ctccc--caggagtgagcgacagctcctcctaccacagccccaaggtggaggagtggagc B D Shrew ttctgttc--ttccc--caggagtgagcgacagctccccctaccacagccctaaggtggaggagtggagc B D Elephant ttctcctc--ctccc--taggagtgagcgacagctccccctaccacagccccaaggtggaggagtggagc B D Tenrec ctttcctc--ctccg--caggagtgagcgacagctccccctaccacagccccaaggtggaggagtggagc B D Opossum tcctgtac--ttcca--ccacagtgagcgacagctccccctaccacagtccaaaggtagaagagtggagc B D Chicken ttgcccccgtgtttc--cctcagtgagcgacacctcgtcgtaccccagccccaaggtggaggagtggagc B D X. tropicalis ---tcccc--caccc--ta---gtcagtgacacctcgccgtaccccagtcccaagctggaggagtggagc B D Guinea pig NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN B D Zebrafish ====================================================================== Mouse agcctgggccgcaacaacttccctgccgccgccccgcacgcagtgaatggattggagaagggagccttgg Rat agcctgggccgcaacaacttctctgctgcagccccgcacgcagtgaatggattggagaagggagccttgg GCF_003668045 agcttgggccgcaacaacttcccggccgccgccccgcacgcagtgaacggactggagaagggggccttgg Beaver agcttgggccgcaacaacttccccgccaccggcccgcacgcggtgaacgggctggagaagggagcgttgg Squirrel agcctgggccgcaacaacttccctgctgccgctccgcacgcggtgaacgggctggagaagggagccttgg Rabbit agcctgggccgcaacaacttccctgccgccgccccgcacgcggtgaacgggctggacaagggagccttgg Pika agcctggcccgcaacaacttccctgcggctgctccgcacgcggtgaacggactggacaagggcgccttgg Human agcctgggccgcaacaacttccccgccgccgccccgcacgcggtgaacgggttggagaagggagccctgg Chimp agcctgggccgcaacaacttccccgccgccgccccgcacgcggtgaacgggttggagaagggagccctgg Bonobo agcctgggccgcaacaacttccccgccgccgccccgcacgcggtgaacgggttggagaagggagccctgg Gorilla agcctgggccgcaacaacttccccgccgccgccccgcacgcggtgaacgggttggagaagggagccctgg Rhesus agcctgggccgcaacaacttccccgccaccgccccgcacgcggtgaacgggttggaaaagggagtcctgg Marmoset agcctgggccgcaacaacttccccgccgccgccccgcacgcggtgaacgggctggagaagggagccctgg Tarsier agcctgggccgcaacaacttccctgccaccgccccgcacgcggtgaacgggctggagaagggagccttgg Bushbaby agcctgggccgcaacaacttccctgccgctgccccgcacgccgtgaacgggctggagaagggagccttgg Tree shrew agcctgggccgcaacaactttcctgccaccgccccgcatgcggtgaacgggctggagaagggaaccttgg Malayan flying lemur agcctgggccgcaacaacttccctgccgcggccccgcacgcggtgaacgggctggagaagggagccttgg Pig agcctgggccgcagcaacttcccggccgccgccccgcacgcggtgaacgggctggagaagggggccttgg Dolphin agcctgggccgcagcaacttccccgccgccgccccgcacgcggtgaacgggctggagaagggggccttgg Cow agcctgggccgcagcaacttccccgccgccgccccgcacgcggtcaacgggctggagaagggggccttgg Sheep agcctgggccgcagcaacttccccgccgccgccccgcacgcggtcaacgggctggagaagggggccttgg Horse agcctgggccgcgccagcttccccgccgccgccccgcacgcggtgaacgggctggagaagggagccttgg Chinese pangolin agcctgggccgcaacaacttccctgccgccggcccgcacgcggtgaacgggctggagaagggagccctgg Dog agcctgggccggaacaacttcccggcggccgccccgcacgcggtgaacgggctggagaagggcgccctgg Hawaiian monk seal agcctgggccggaacaacttcccggccgccgccccgcacgcggtgaacgggctggagaagggagccctgg Hedgehog agcctaggccgcaacaacttctctgccactgccccgcacgctgtgaacgggctggagaagggagccttgg Shrew agcttgggccgcaataactttcccgcggccaccccgcacgcggtgaacggcctggagaagggcaccttgg Elephant agcctaggccgcagcaacttccctgccgccgcgccgcacgcggtgaacgggctggagaagggagccttgg Tenrec agcttgggccgcagcaacttccccgccgccgcgcctcacgcggtcaacgggctggacaagggcgccctgg Opossum agtttgggccgcaacaacttttccacccctgccccgcacccggtcaatgggctggagaaagggtctttgg Chicken agcctgggccggagcagcttccccgctgcagcccagcatgccgtgaacgggctggagaagagctccctgg X. tropicalis agcctgagcagaaaca-cgtttcagtcg--gcccagcatgtcctcaatggcttagagaagagctcactgg Guinea pig NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN Zebrafish ====================================================================== Mouse agcaggaagccaagtacggccaggtgag Rat agcaagaagccaagtacggccaggtgag GCF_003668045 agcaggaggccaagtacggccaggtgag Beaver agcaggaagccaagtacggccaggtgag Squirrel agcaggaagtcaagtacggccaggtgag Rabbit agcaggaagccaagtacgggcaggtgag Pika aacaggaggccaagtacgggcaggtgag Human agcaggaagccaagtacggtcaggtgag Chimp agcaggaagccaagtacggtcaggtgag Bonobo agcaggaagccaagtacggtcaggtgag Gorilla agcaggaagccaagtacggtcaggtgag Rhesus agcaggaagccaagtacggtcaggtgag Marmoset agcaggaaaccaagtacagtcaggtgag Tarsier agcaggaagccaagtacggtcaggtgag Bushbaby agcaggaagccaagtacggtcaggtgag Tree shrew agcaggaagccaagtacggtcaggtgag Malayan flying lemur agcaggaagccaagtacggccaggtgag Pig agcaagaagccaagtacgctcaggtgag Dolphin agcaggaagccaagtacgctcaggtgag Cow agcaggaagccaagtacgcgcaggtgag Sheep agcaggaagccaagtacgcgcaggtgag Horse agcaggaggccaagtacgggcaggtgag Chinese pangolin agcaagaagccaagtacggtcaggtgag Dog agcaggaagccaagtacgctcaggtgag Hawaiian monk seal agcaggaagccaagtacggccaggtgag Hedgehog aacaagaagccaagtacggtcaggtgag Shrew agcaggaagccaagtacggtcaggtgag Elephant agcaggaagccaagtacggtcaggtgag Tenrec agcaggaagccaagtacggtcaggtgag Opossum agcaggaggtcaaatatggacaggtaag Chicken aacaggaggccaagtacagccaggtaaa X. tropicalis aacaggaggtcaagtacagccaggtaag Guinea pig NNNNNNNNNNNNNNNNNNNNNNNNNNNN Zebrafish ============================ Inserts between block 32 and 33 in window B D X. tropicalis 20321bp Alignment block 33 of 313 in window, 56746945 - 56746946, 2 bps B D Mouse ga B D Rat ga GCF_003668045 ga Beaver ga B D Squirrel ga B D Rabbit gc B D Pika ga B D Human ga B D Chimp ga B D Bonobo ga B D Gorilla ga B D Rhesus ga B D Marmoset ga B D Tarsier ga B D Bushbaby ga B D Tree shrew ga B D Malayan flying lemur ga B D Pig ca B D Dolphin ga B D Cow ga B D Sheep ga B D Horse ca B D Chinese pangolin ga B D Dog ga B D Hawaiian monk seal ga B D Hedgehog ga B D Shrew ga B D Elephant ga B D Tenrec ga B D Opossum ga B D Chicken g- B D Guinea pig NN B D Zebrafish == B D X. tropicalis == Inserts between block 33 and 34 in window B D Bushbaby 3bp B D Shrew 11bp B D Opossum 1351bp Alignment block 34 of 313 in window, 56746947 - 56746952, 6 bps B D Mouse ---ggagag B D Rat ---ggagag GCF_003668045 ---ggagag Beaver ---ggcgag B D Squirrel ---ggcgag B D Rabbit ---ggcgag B D Pika ---ggcgag B D Human ---ggcgag B D Chimp ---ggcgag B D Bonobo ---ggcgag B D Gorilla ---ggcgag B D Rhesus ---ggcgag B D Marmoset ---ggcgag B D Tarsier ---ggcgag B D Bushbaby ---ggcgag B D Tree shrew ---ggcgag B D Malayan flying lemur ---ggcgag B D Pig ---ggcgag B D Dolphin ---cgcgag B D Cow ---ggcggg B D Sheep ---ggcggg B D Horse ---ggcgcg B D Chinese pangolin ---ggtgag B D Dog ---ggc-ag B D Hawaiian monk seal ---ggcgag B D Hedgehog ---ggcggg B D Shrew ---ggtggg B D Elephant ---ggcgag B D Tenrec ---ggtgcg B D Chicken gtagac--- B D Guinea pig NNNNNNNNN B D Zebrafish ========= B D X. tropicalis ========= B D Opossum ========= Alignment block 35 of 313 in window, 56746953 - 56746984, 32 bps B D Mouse ggct-tggc-c----ag--gc-agctgcc-tggtgtgggggg B D Rat ggct-tagc-t----cg--gcgggctgcc-tgctgttgggga GCF_003668045 ggct-tggc-c----ag--gcaggcctcc-tggtgcggggga Beaver ggct-tggc-c----ag--gtgggccgcg-tggcggcggggg B D Squirrel ggcc-tggc-c----ag--gtgggccgcg-cgccg--agggg B D Rabbit ggcc-gggg-c----ag--gtgggccgcg-tggcggctgggt B D Pika cacc-agggcc----ag--gggggccaagagggccgcggggt B D Human ggtc-aggc-c----ag--gtgggccgcg-tggcggcgggga B D Chimp ggtc-aggc-c----ag--gtgggccgcg-tggcggcgggga B D Bonobo ggtc-aggc-c----ag--gtgggccgcg-tggcggcgggga B D Gorilla ggtc-cggc-c----ag--gtgggccgcg-tggcggcgggga B D Rhesus ggtc-aggt-c----ag--gtgggtcgct-tggcggcaggga B D Marmoset gtcc-cggc-c----ag--gtggaccgcg-tggcgccgggga B D Tarsier ggcc-aggc-c----ag--gtgggctgcg-tggcagcgggga B D Bushbaby cgcc-cggc-c----at--ttgggccgcg-tggcggcggggg B D Tree shrew ggcc-cagc-c----ag--gtgggccgcg-tggcgacggggg B D Pig ggcc-ccgc-c----gg--gtgggccgcg-ggg--------g B D Dolphin ggcc-ccgc-c----gg--gtgggccgcg-ggg--------g B D Cow ggcc-ccgc-c----gg--gtgggccgcg-gcg--------g B D Sheep ggcc-ccgc-c----gg--gtgggccgcg-ggg--------g B D Horse ggccgccgg-c----ggccgcgggcggcg-ggg--------- B D Chinese pangolin ggcc-ccgt-c----gg--gtgggcagca-gggcagcgggcg B D Dog ggcc-ccgc-c----gg--ctgcgccgcg-tggcggc-cggg B D Hawaiian monk seal ggcc-ccgc-c----gg--gtgggccgct-tggcggcggggg B D Hedgehog gaga-catg-t----gg-------ctgct-gaa--------- B D Shrew tggg-cgcg-c----gg-------ccacg-gga--------- B D Elephant ggtc-gggc-cgcgtgg--ggccgcggc--ggcgagcggggg B D Tenrec gctc-gggc-c----gg--ggccgctgcg-ggctcggggagg B D Chicken -ggc-cggc-c----gg--gtggg----g-gggtgcgtgggg B D Guinea pig NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN B D Zebrafish ========================================== B D X. tropicalis ========================================== B D Opossum ========================================== B D Malayan flying lemur NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN Inserts between block 35 and 36 in window B D Hedgehog 16bp B D Shrew 1bp B D Chicken 7572bp Alignment block 36 of 313 in window, 56746985 - 56746986, 2 bps B D Mouse tt B D Rat tt GCF_003668045 tt Beaver cg B D Squirrel tt B D Rabbit tt B D Pika tg B D Human tt B D Chimp tt B D Bonobo tt B D Gorilla tt B D Rhesus tt B D Marmoset tt B D Tarsier tt B D Bushbaby tt B D Tree shrew tt B D Pig tc B D Dolphin tt B D Cow tt B D Sheep tt B D Horse -t B D Chinese pangolin tt B D Dog tt B D Hawaiian monk seal tc B D Elephant c- B D Tenrec c- B D Guinea pig NN B D Hedgehog == B D Zebrafish == B D X. tropicalis == B D Opossum == B D Chicken == B D Shrew == B D Malayan flying lemur NN Inserts between block 36 and 37 in window B D Human 1bp B D Chimp 1bp B D Bonobo 1bp B D Gorilla 1bp B D Rhesus 1bp B D Marmoset 1bp B D Tarsier 1bp B D Bushbaby 1bp B D Tree shrew 14bp B D Pig 1bp B D Dolphin 1bp B D Cow 1bp B D Sheep 1bp B D Horse 1bp B D Chinese pangolin 1bp B D Dog 1bp B D Hawaiian monk seal 1bp Alignment block 37 of 313 in window, 56746987 - 56747007, 21 bps B D Mouse --------gggggttggggg-at-gaaggat B D Rat ----------------ggag-at-gagggac GCF_003668045 ---------------gggag-at-ggaggac Beaver --------------tgggag-tt-ggaggac B D Squirrel --------------tgggag-gt-ggaggac B D Rabbit ---------------gggcg-gt-ggaggac B D Pika ---------------gggcc-at-ggaggac B D Human ---------------aggcg-at-ggaacac B D Chimp ---------------aggcg-at-ggaacac B D Bonobo ---------------aggcg-at-ggaacac B D Gorilla ---------------aggcg-at-ggaacac B D Rhesus ---------------aggcg-at-ggag-ac B D Marmoset ---------------aggcg-ataagaagac B D Tarsier ---------------gggcg-at-ggagtac B D Bushbaby ---------------gggcg-at-ggaggac B D Pig ---------------gggcg-ac-gcaggcc B D Dolphin ---------------gggcg-ac-ggaggcc B D Cow ---------------gggcg-ac-ggagg-c B D Sheep ---------------gggcg-ac-ggagg-c B D Horse ---------------gggcg-ct-gcaggac B D Chinese pangolin ---------------gggcg-at-g-aggac B D Dog ---------------gcgcg-ac-ggaggac B D Hawaiian monk seal ---------------gggcg-ac-gggggac B D Shrew ---------------cgaag-at-gccaggc B D Elephant gaccggctta-----gggcg-ag-ggag--- B D Tenrec g------tgg-----gggcgcag-cgcg--- B D Guinea pig NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN B D Tree shrew =============================== B D Hedgehog =============================== B D Zebrafish =============================== B D X. tropicalis =============================== B D Opossum =============================== B D Chicken =============================== B D Malayan flying lemur NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN Inserts between block 37 and 38 in window GCF_003668045 15bp Beaver 16bp B D Squirrel 16bp B D Rabbit 16bp B D Pika 16bp B D Human 22bp B D Chimp 16bp B D Bonobo 16bp B D Gorilla 16bp B D Rhesus 16bp B D Marmoset 16bp B D Tarsier 24bp B D Bushbaby 16bp B D Pig 7bp B D Dolphin 16bp B D Cow 16bp B D Sheep 16bp B D Horse 17bp B D Chinese pangolin 16bp B D Dog 15bp B D Hawaiian monk seal 15bp B D Shrew 16bp Alignment block 38 of 313 in window, 56747008 - 56747050, 43 bps B D Mouse ------------------gcctc----------------------------------gaag-gggagaag B D Rat ------------------gcctt----------------------------------gaagagggagaag GCF_003668045 ------------------gcctc----------------------------------gacg-gagagaaa Beaver ------------------gcttt----------------------------------gacg-gacagaag B D Squirrel ------------------gccct----------------------------------aacc-aagaggaa B D Rabbit ------------------gcctc----------------------------------gagc-gaggggag B D Pika --------------------------------------------------------------gaggcaag B D Human ------------------gcttc----------------------------------ccgc-gagagaag B D Chimp ------------------gcttc----------------------------------ccgc-gagagaag B D Bonobo ------------------gcttc----------------------------------ccgc-gagagaag B D Gorilla ------------------gcttc----------------------------------ccgc-gagagaag B D Rhesus ------------------gcttc----------------------------------ccgc-gagagaag B D Marmoset ------------------gcctc----------------------------------ccgg-gagaaaaa B D Tarsier ------------------gcttc----------------------------------ggtc-gagagaag B D Bushbaby ------------------gcctcgactcactgctgtcactatgcggatccctcgtagttgg-gggcgaaa B D Tree shrew ------------------gcctc----------------------------------gacg-gagggaag B D Pig ---------------------------------------------------------------------- B D Dolphin ------------------acctc----------------------------------gaccgaggagagg B D Cow ------------------gcctc----------------------------------gaccgaggagaag B D Sheep ------------------gcctc----------------------------------gaccgaggggaag B D Horse ------------------acctc----------------------------------gaccgaggggcag B D Chinese pangolin ------------------gcttc----------------------------------caccaaggggcag B D Dog ------------------gcctc----------------------------------gacc-aggggaag B D Hawaiian monk seal ------------------gcctc----------------------------------gacctaggggaag B D Hedgehog ------------------gccca----------------------------------ccagggaaggaag B D Shrew ------------------ccctg----------------------------------cacttaagaggag B D Elephant gacccaggtcctttctgagcctc----------------------------------gaccgaggggaag B D Tenrec gacccgggccctctctgggcggt----------------------------------cgtcg------ag B D Guinea pig NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN B D Zebrafish ====================================================================== B D X. tropicalis ====================================================================== B D Opossum ====================================================================== B D Chicken ====================================================================== B D Malayan flying lemur NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN Mouse ctcaggctgg-cgaccc-tctggggcc---------------g Rat t---ggctgc-cgaccc-actggggcc---------------- GCF_003668045 t------------gccc-actggtgcc---------------a Beaver cccagccggg-cgaccc-gttgcggctggatccggactgaacg Squirrel cccaggctga-ggacct-gctgctgcc---------------a Rabbit cccgggccgg-cgacccggctgctgac---------------a Pika cccgagctggtcacccccgttggtgcc---------------a Human cccaggctgg-cgtccc-tttgctgct---------------a Chimp cccaggctgg-cgtccc-tttgctgct---------------a Bonobo cccaggctgg-cgtccc-attgctgct---------------a Gorilla cccaggctgg-cgtccc-tttgctgct---------------a Rhesus cccaggctgg-cgcccc-tttgctgct---------------a Marmoset cccaggcccg-cgccca-tttgctgct---------------a Tarsier cccaggcccg-cg-----gttgctgac---------------a Bushbaby ttgaggtccc-agcgcc-ttgacaccc---------------a Tree shrew cccgggctgg-cgaccc-tttgctgcc---------------a Pig -ccaggccga-ctaccc-ctggaggcc---------------a Dolphin cccaggtcca-ctcccc-gtggcggcc---------------a Cow ccctggccgc-ctcccc-gtgacggcc---------------a Sheep ccctggccgc-ctcccc-gtgacggcc---------------a Horse tccaggccga-ggaccc-gtcgcggcc---------------a Chinese pangolin cccagaccgg-ctacac-gtcgccgcc---------------g Dog ccgcggccga-cccccc-gccaatgcc---------------g Hawaiian monk seal cccaggccga-ccaccc-gtcactgcc---------------g Hedgehog ----ggtcaa-gctatg-tcggccacc---------------c Shrew ----ggcc----ccctc-gcggcggcc---------------c Elephant cccaggccga-cctccc-gggactgcc---------------t Tenrec cccagcccgg-tcccct-ggg---gcc---------------t Guinea pig NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN Zebrafish =========================================== X. tropicalis =========================================== Opossum =========================================== Chicken =========================================== Malayan flying lemur NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN Inserts between block 38 and 39 in window B D Chinese pangolin 807bp B D Hedgehog 22bp B D Shrew 16bp Alignment block 39 of 313 in window, 56747051 - 56747249, 199 bps B D Mouse -------------------------gga----------------ggcgga-accc------ggctaggct B D Rat -------------------------gga----------------gatgga-tccc------gggttggct GCF_003668045 -------------------------gga----------------gatggg-tccc------aggttgact Beaver -------------------------ggg----------------gctcgg-gcct------tggaaggcg B D Squirrel -------------------------cta----------------gccgga-atcc------cagtcgatg B D Rabbit -------------------------gga----------------gcccgacgctcagttgctggggggcg B D Pika -------------------------gga----------------acccga-gttc--------------- B D Human -------------------------cga----------------gccaga-tcct------tcgtggact B D Chimp -------------------------cga----------------gccaga-tcct------tcgtggact B D Bonobo -------------------------cga----------------gccaga-tcct------tcgtggact B D Gorilla -------------------------cga----------------gccaga-tcct------tcgtggacc B D Rhesus -------------------------cca----------------gtcaga-tcct------tcgtggact B D Marmoset -------------------------cca----------------gccaga-tcct------ctgtgcttt B D Tarsier -------------------------cga----------------gccggg-gccc------cggttgatt B D Bushbaby -------------------------ctagggtcggggagcgctcgccagg-gcac------atacagact B D Tree shrew -------------------------ctt----------------gtcgga-ttcc------acgttgatt B D Pig -------------------------cga----------------gcctga-agcc------gaggtgacg B D Dolphin -------------------------cga----------------gcccca-agcc------ggggcaatg B D Cow -------------------------cga----------------gcccca-ggcc------acggcggcg B D Sheep -------------------------cga----------------gccccg-ggcc------agggcggcg B D Horse -------------------------cga----------------gcccga-tgcc------cggttgccc B D Dog -------------------------gga----------------gcccat-t-cc------gggtcgggc B D Hawaiian monk seal -------------------------gga----------------gtccta-t-cc------cggtcggct B D Hedgehog --------------------------gg------------------c------tc------agatcctcc B D Shrew --------------------------gg----------------gcc------cc------aggcccccg B D Elephant cgagccttatccgggcagattggggcgt----------------gaccaa-agcc------cgg-ccttc B D Tenrec cgagct-----------------ggcct----------------ggcgca-aacc------cggaccccc B D Guinea pig NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN B D Zebrafish ====================================================================== B D X. tropicalis ====================================================================== B D Opossum ====================================================================== B D Chicken ====================================================================== B D Chinese pangolin ====================================================================== B D Malayan flying lemur NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN Mouse gagtctg--------ggcc-taggg--ct-------------------------------------gggc Rat gagtctg--------ggct-gatgc--ct-------------------------------------gggt GCF_003668045 aagtctg--------ggct-gaagt--tt-------------------------------------gagt Beaver gagtgag--------gcct-ccacc--ctgcca--------------------------------agggc Squirrel gaggcaggacag--aggct-gctgc--ctccga------------------------gg----gcagagt Rabbit ggacggc--------ggtt-cgggc--ctccga------------------------gg----gcggagc Pika -----ga--------ggct-cgggc--ctgaga------------------------gggagcgcagagt Human ggggcgaagcag--aggcc-tgagc--cttgga------------------------ag----gcggagc Chimp ggggcgaagcag--aggcc-tgagc--cttgga------------------------ag----gcggagc Bonobo ggggcgaagcag--aggcc-tgagc--cttgga------------------------ag----gcggagc Gorilla ggggcgaagcag--aggcc-tgagc--cttgga------------------------ag----gcggagc Rhesus ggggctaagcag--aggcc-cgagc--cttgga------------------------ag----gcggagc Marmoset ggggtgaaacag--aggcc-cgggc--cttcga------------------------ag----gcggagc Tarsier gggagggaacag--aggtc-cg-gc--ctcccg------------------------ag----gcagagc Bushbaby ggggtgccagct--aggc------c--cttggg------------------------aa----gc----- Tree shrew ggggaggaacag--aggcc-cgggc--cttcct------------------------gg----gcggagt Pig gggctg--------aggcc-tcgac--ccccg------------------------------------gc Dolphin ggggcgggacag--aggcc-cggac--ccgcga------------------------gg----gcgtagt Cow ggggcgggaca---acgcc-cagac--gcgcga------------------------gg----gcggggt Sheep gggccgggacgggtacgcc-cagacgggcgcga------------------------gg----gcgggtt Horse ggcgcgggacag--aggcc-c-gac--cctcga------------------------gg----gcgctgt Dog gaggcgggaccg--gggcc-cggag--cttccg------------------------gg----gcgcagt Hawaiian monk seal gaggcgggaccg--aggcc-cggac--cgtccg------------------------gg----gcggagt Hedgehog agggcagagtag--aggcc-agact--cctccc------------------------c------------ Shrew acgacc---tcg--aggac-aggac--ccccgt------------------------cg----c------ Elephant gaggcggagccg--aggcctcggcc--ctcgcccccgggagctcagagccctggtcggg----acgtaag Tenrec gcggtggagccc--aggcc-cgggc--ctccccgcggggtgc---------------gg----gcgcacg Guinea pig NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN Zebrafish ====================================================================== X. tropicalis ====================================================================== Opossum ====================================================================== Chicken ====================================================================== Chinese pangolin ====================================================================== Malayan flying lemur NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN Mouse aaaagcc-------tggc-atccagcc-----------------------------------------gc Rat taaagcc-------tagc-atcccgcc-----------------------------------------gc GCF_003668045 agaagtc-------taac-atcccgct-----------------------------------------gc Beaver cgcggcctccgggatggt-ggctcgcc-----------------------------------------gg Squirrel tgaggcc---------ac-gaccc-ct-----------------------------------------tc Rabbit tgaggcc-------tcga-ccctcgcc-----------------------------------------ag Pika tgaggcc-------tgga-tc------------------------------------------------- Human tggggcc-------tcga-cccccgccaggggccgg------------------gagcgctcgtcagggc Chimp tggggcc-------tcga-cccccgccaggggccgg------------------gagcgctcgtcagggc Bonobo tggggcc-------tcga-cccccgccaggggccgg------------------gagcgctcgtcagggc Gorilla tgggacc-------tcga-cccccgccaggggccgg------------------gagctctcgtcagggc Rhesus tggggcc-------tcga-cccctgccaggggtcgg------------------gagagctcgccagggc Marmoset ttgggcc-------tcaaccccccgccaggggccgggagcgctcgccagggcgcggg------------- Tarsier ggaggcc-------tcga-cccccgccagggtcccg------------------gggcgctcg-cacagc Bushbaby -----------------a-cccccaggcctgtttgg--------------------------------cc Tree shrew tgaggtt-------tcgt-cccccgccgggaggcta------------------ccgcgcgctccgaggc Pig -cgggcc-------ccgg-agcggcgg------------------------------------------- Dolphin -gaggcc-------tcga-ccccc---------------------------------------------- Cow -gaggcc-------tcga-cccctcgg------------------------------------------- Sheep -gaggcc-------tcga-cccgc--g------------------------------------------- Horse ggaggcc-------tcg--ccccgcgccg---------------------------------------gg Dog tgaggcc-------tcga-cccccccccc---------------------------------------cc Hawaiian monk seal tgaggcc-------tcga-ccccccgc------------------------------------------- Hedgehog -----ct-------ccgc-ccgaggtcgg---------------------------------------ga Shrew -gacgcc-------ccgc-cagag---------------------------------------------- Elephant -ggggct-------tcgg-gccgcggc---------------------------------tccccgaggc Tenrec tggggct-------gcga-ac----------------------------------------------ggt Guinea pig NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN Zebrafish ====================================================================== X. tropicalis ====================================================================== Opossum ====================================================================== Chicken ====================================================================== Chinese pangolin ====================================================================== Malayan flying lemur NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN Mouse gc-ct-----------gtggcc-cc------------------cag------------------------ Rat gc-ct-----------gtgg-c-tc------------------caa------------------------ GCF_003668045 ac-gt-----------ttggcc-cc------------------cag------------------------ Beaver gc--------------gcgacc-ctggg---------------aag------------------------ Squirrel ac-cc-----------gcgccc-gc------------------cag------------------------ Rabbit ga--------------gtgggc-ctgggt--------------cag------------------------ Pika ----------------gctggt-ccg-----------------ccc------------------------ Human gc-tg-----------ggggtc-tggggc------------ggcag-ctccccggggcgaggctctggga Chimp gc-tg-----------ggggtc-tggggc------------ggcag-ctccccggggcgaggctctggga Bonobo gc-tg-----------ggggtc-tggggc------------ggcag-ctccccggggcgaggctctggga Gorilla gcggg-----------ggggtc-tggggc------------ggcag-ctccccggggcgaggctctggga Rhesus gc-gg-----------ggggtc-tggggc------------ggtgg-ctccccggggcgcggctctggga Marmoset ------------------ggtc-tggggc------------ggccg-ctccccggggcgcggctctggga Tarsier gc-gc-----------ggggtcagggggc------------ggcggcccccccgaggcgtggccctggga Bushbaby gc-tg-----------gacatt-ttagaa------------gtccg------------------------ Tree shrew gc-tc-----------ggggtc-tccggc------------ggcgg-ct-ctcggggcgcagcacttgga Pig -t-tg-----------c----c-cgaagc-------------gctg-----------------ccctgga Dolphin ------------------------------------------gcgg-----------------ccctgga Cow -c-tg-----------gaggcc-cggggc------------ggcgg-----------------ccctgga Sheep -c-cg-----------g----c-cggagc-------------gcgg-----------------gcctgga Horse cc-gg-----------gggcct-gggaggcggctccccgggcgcgg------------------cctgga Dog gc-gc-----------ccgccc-ccgcgcccg-----cccccgcgg--------------------tgga Hawaiian monk seal -c-ag-----------gagccc-aggagcccggggtcctggggcgg--------------------tgga Hedgehog tc-tggggcagaggcagctccc-taaggc-------------cggg-----------------ccctgga Shrew ----------------gctccc-cgaggc-------------ctgg-----------------tttcgga Elephant ag-gc-----------gcggcc-cgggaa----------------g------------------------ Tenrec cc-gg-----------gcggcc-gggccc----------------g------------------------ Guinea pig NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN Zebrafish ====================================================================== X. tropicalis ====================================================================== Opossum ====================================================================== Chicken ====================================================================== Chinese pangolin ====================================================================== Malayan flying lemur NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN Mouse --cccttcca----gg----ccag-cc-------gggttt------------------------------ Rat --accttcca----gc----ccag-cc-------gggttc------------------------------ GCF_003668045 --ccctttcactacac----ctag-cc-------gatctc------------------------------ Beaver --cgcctcca----gg----ccgg-tt-------tggcctcc---------------------------- Squirrel ---------a----gg----ccag-ga-------gcgctcgccag------------------------- Rabbit --cgcctgca----gg----cccg-tg-------tggcttcg---------------------------- Pika --cgcctgca----gg----ccc--cg-------tggcttcc---------------------------- Human agcgcctcca----gg----cctg-tc-------ggcctccgggagcttggggaggcggctcccgaagcc Chimp agcgcctcca----gg----cctg-tc-------ggcctccgggggcttggggaggcggctcccgaagcc Bonobo agcgcctcca----gg----cctg-tc-------ggcctccgggggcttggggaggcggctcccgaagcc Gorilla agcgcctcca----gg----cctg-tc-------ggcctccgggggcttgggga---------------- Rhesus agcgcctcca----gg----cctc-tc-------ggcctctgggggcttggagaggcggctcccgaagcc Marmoset agcgcctcca----gg----cctt-tc-------ggtctctggaggcttggggaggcggctcccgaag-c Tarsier agcgcctcta----ag----cctgctt-------ggcctttgggggctcggggaggcctcgcctgagccc Bushbaby --tgcctaaa----gc----ccac-tc-------ggctcctcgca------------------------- Tree shrew agagcctcca----gg----tctgttt-------ggcccctggaggt--------------------gcc Pig aatgcgttcg----gg----cctattt-------ggct-ccggaggctcggggaggccgcgcc------- Dolphin agcgcctccg----gg----cctgctc-------ggccgctggaggcgcggggaggtcgcgcc------- Cow agcgcctcgg----gg----cc-tgtt-------ggcc-----aaac------ggcttgcgcc------- Sheep agcgcctcgg----gg----ccttgtg-------ggcc-----aaac-----gggcttgcgcc------- Horse ggcccctgca----gg----cctctgg-------ggccggt---ggagcggggaggccgcgcc------- Dog ggcgccgccg----gg----cccgcct-------ggcctccgc-ggcgcggggaggcggcgcc------- Hawaiian monk seal agcgcctcca----gg----cctgcgt-------ggcctctgcaagcgccgggaggccgcgcc------- Hedgehog agtgccccca----aa----cctactt-------ggcctctggaggctcaggcaggccgagc-------- Shrew agcagccccg----caggcgcccgctgaccaagaggccgcaggaggcgcggggaggccgcgc-------- Elephant --cgcttcca----gg----cctgctt-------ggcctctggaggg-----gaggccgcgtg------- Tenrec --cg----------------------t-------ggcctcgggaggagccgcgaggccgcatc------- Guinea pig NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN Zebrafish ====================================================================== X. tropicalis ====================================================================== Opossum ====================================================================== Chicken ====================================================================== Chinese pangolin ====================================================================== Malayan flying lemur NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN Mouse ------------------------------------------a--g--tcaagc----ca--------ag Rat ------------------------------------------a--g--tctatc----ca--------ag GCF_003668045 ------------------------------------------a--g--ttaacc----ca--------ag Beaver ----------------------g------------------ga--g--cgcccg----ca--------gg Squirrel ----------------------g------------------gc--g--tgtgcc----ct--------gg Rabbit ------------------------------------------a--g--agcgca----cg--------ga Pika ------------------------------------------c--c--agcgcg----cg--------gg Human ctttcggcggctctcgttggggg----------------taga--g--ttaacc----aa--------ag Chimp ctttcggcggctctcactggggg----------------taga--g--tcaacc----aa--------ag Bonobo ctttcggcggctctcactggggg----------------taga--g--tcaacc----aa--------ag Gorilla -----ggcggctgtcattggggg----------------taga--g--ttaacc----aa--------ag Rhesus ctttcagcggctctcattgaggg----------------taga--g--ttaacc----aa--------ag Marmoset ctttcagcgactcatattggggg----------------taga--g--ttagcc----aa--------ag Tarsier -----------------tagtggctgcttgccttgaggctaga--t--ttaacc---aaa--------aa Bushbaby -----------------cggggc----------------taga--g--ttaacc----aa--------ag Tree shrew -----------------cggagg----------------ccgt--gcctgaacctttcag--------tg Pig ---------------------------------------tgaa--g--cccatt----cg---------- Dolphin ---------------------------------------tgaa--g--ccttt---------------aa Cow ---------------------------------------ccag--c--cctctc----cgcggctcg-ag Sheep ---------------------------------------cggagcc--cctctc----cgcggctcgaag Horse ---------------------------------------tgag--c--cttcct----gc--------cg Dog ---------------------------------------tgaa--g--cccac----------------- Hawaiian monk seal ---------------------------------------cgaa--g--ccca------------------ Hedgehog ----------------------------------------aag--g--ca-------------------- Shrew ----------------------------------------gaa--g--cgctcg----ga--------gc Elephant ---------------------------------------tcaa--g--gccttt----ct--------gc Tenrec ---------------------------------------tcag--g--ccttcc----ct---------- Guinea pig NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN Zebrafish ====================================================================== X. tropicalis ====================================================================== Opossum ====================================================================== Chicken ====================================================================== Chinese pangolin ====================================================================== Malayan flying lemur NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN Mouse g--------------------------ccg------agct-------------tt--gg----------- Rat g--------------------------ccg------agct-------------tc--gg----------- GCF_003668045 g--------------------------ccg------agct-------------tc--gg----------- Beaver c--------------------------ctgtccgctaccc-------------cc--gg----------- Squirrel g--------------------------aag------cgct-------------ttcagg----------- Rabbit ggccgcaactgaagccccttcggctgctcg------cgcc-----------------gg----------- Pika g--------------------------ccg------tgcc-----------------gg----------- Human a--------------------------agg------cgct-------------tc--tg----------- Chimp a--------------------------agg------cgct-------------tc--tg----------- Bonobo a--------------------------agg------cgct-------------tc--tg----------- Gorilla a--------------------------agg------cgct-------------tc--tg----------- Rhesus a--------------------------agg------cgct-------------tc--cg----------- Marmoset a--------------------------aga------ccct-------------tc--cg----------- Tarsier a--------------------------agg------cgct-------------tc--cg---------a- Bushbaby a--------------------------aga------gtct-------------tc--ca----------- Tree shrew t--------------------------gtt------cgca-------------tc--cg----------- Pig ---------------------------gcg------gctc-------------gc--gt-cgggccccgc Dolphin c--------------------------gcg------gctc-------------gc--gtcggggtacac- Cow t--------------------------cgg------ggct-------------ac--ag----------- Sheep t--------------------------cgg------ggcc-------------ac--at----------- Horse c--------------------------tct------gctc-------------gc--cg----------- Dog ------------------------------------------------------c--cg----------- Hawaiian monk seal ---------------------------------------------------------cg----------- Hedgehog ------------------------------------------------------t--ag----------- Shrew t--------------------------gcg------gccg-------------tc--gg----------- Elephant tgctggtac------------------aag------ggctggagttatggagatg--cg----------- Tenrec -----------------------------g------ggccggcg---------ag--cg----------- Guinea pig NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN Zebrafish ====================================================================== X. tropicalis ====================================================================== Opossum ====================================================================== Chicken ====================================================================== Chinese pangolin ====================================================================== Malayan flying lemur NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN Mouse --cacggcc-------a--gg---------ctt--tg---ggg---ttc------------ga------g Rat --cacggcc-------a--ga---------ctt--tg---ggg---ttc------------ag------a GCF_003668045 --agtggcc-------g--gg---------ctt--tg---ggc---ttt------------ag------a Beaver --cggggct-------g--ga---------------g---gtc---acc------------aa------a Squirrel --cctgttt-------g--ga---------cc----g---gg---------------------------- Rabbit --ccagggt-------t--aa---------ccg--ca---gca---g----------------------- Pika --ct------------------------------------------------------------------ Human --aagggcc-------g--agcggagcagccct--gg---ggc---ctc------------ag------a Chimp --aagggcc-------g--ggtggagcggccct--gg---ggc---ctc------------ag------a Bonobo --aagggcc-------g--ggcggagcggccct--gg---ggc---ctc------------ag------a Gorilla --aagggcc-------g--ggcggagcagccct--gg---ggc---ctc------------ag------a Rhesus --aagggcc-------a--ggcggagcagccct--gg---ggc---ctc------------ag------a Marmoset --aagggcc-------g--ggtcgagcaaccct--gg---ggc---ttc------------gg------a Tarsier --aaaggct-------g--ggcctcgcggccct--gg---ggt---ctc--------------------- Bushbaby --atagggc-------g--agc-aagcag-cct--gg---gat---ccc------------cg------a Tree shrew --gctggc------------gttgaccaaagaa--gg---cgc---ttctccatgctgagccg------a Pig actt--acc-------c--gggaaggcggctcc--ga---ggg---g-c------------gg------g Dolphin --tt--acc-------c--gggaaggcgcctcc--ga---ggg---gcc------------gg------g Cow --tc--acc-------t--gggacggcgtctcc--ga---ggg---gcc------------ag------g Sheep --tc--acccc--ggac--gggacggcgtctcccgag---ggg---gcc------------ag------g Horse --gc--gctgcagggac--gggcaggcgctccg--gg---agg---gcc------------cg------g Dog --gccggccgctcgcac--gggctggcgagccg--gg-cctgg---gtc------------ct------c Hawaiian monk seal --gc--gctgctcgcacaggggctggtgaccca--cg-cgaggcgcgtc------------cg------c Hedgehog --ag--acc-------c--gg--------------gggaaggt---gct------------cgcaaaagg Shrew --gg--gcc-------c--ga----gtgtctcc--gggacggc---gcg------------cgcgc---g Elephant --aaaggca-------c--ggccaggtggcctg--gg---gcc---ccc------------ag------a Tenrec --ccaggcc-------c--ggc------gcccg--gg---gcc---ccg------------gg------a Guinea pig NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN Zebrafish ====================================================================== X. tropicalis ====================================================================== Opossum ====================================================================== Chicken ====================================================================== Chinese pangolin ====================================================================== Malayan flying lemur NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN Mouse -----gggc------------------------------gc-------c-------------c----cg- Rat gcagcgagc------------------------------gc-------c-------------c----gg- GCF_003668045 g----cagc------------------------------gc-------c-------------c----tg- Beaver ga---aggg------------------------------gc-------c-------------t----cg- Squirrel -----gagc------------------------------gc-------c--------------------- Rabbit -----gagc------------------------------gt-------g-------------c------- Pika ---------------------------------------------------------------------- Human g----ccgc------------------------------gc-------c-------------ttca-cg- Chimp g----ccgc------------------------------gc-------c-------------ttca-cg- Bonobo g----ccgc------------------------------gc-------c-------------ttca-cg- Gorilla g----ccgc------------------------------gc-------c-------------ttca-cg- Rhesus c----ccgc------------------------------ac-------c-------------ttca-cg- Marmoset g----ccg--------------------------------c-------c-------------tcca-cg- Tarsier ----------------------------------------------------------------ca-cg- Bushbaby g----cagc------------------------------gc-------t-------------tcca-ct- Tree shrew g----cggccgggttcccggggcagcgcgggcccccacggc-------c-------------tcca-cg- Pig c----aagc------------------------------gg-------c-------------gatg-ggc Dolphin a----gagc------------------------------gg-------c-------------cgtg-gg- Cow c----gagc------------------------------gg-------c-------------cgtg-gg- Sheep c----ga-c------------------------------gg-------c-------------c----tg- Horse c----cagc------------------------------gg-------c-------------ctcc-tc- Dog g----gagc------------------------------gg-------c-------------ctccgtg- Hawaiian monk seal a----gggc------------------------------cgggcgaccc-------------cgctggg- Hedgehog c----gtgc------------------------------gg-------agccccctgcgtctctc--tg- Shrew g----gtgc------------------------------gg-------g-------------ctc--gg- Elephant g----caac------------------------------gc-------g-------------ggtg-gg- Tenrec c----ccgc------------------------------gc-------g-------------ggc--gg- Guinea pig NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN Zebrafish ====================================================================== X. tropicalis ====================================================================== Opossum ====================================================================== Chicken ====================================================================== Chinese pangolin ====================================================================== Malayan flying lemur NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN Mouse tt-----agt-----------g--------agctgc-g---cctggaggcctc----------------- Rat ct-----agc-----------g--------ggctgc-g---cctggag---------------------- GCF_003668045 cc-----agc-----------g--------ggctgcag---cctggacaccgc----------------- Beaver cc-----gactcggcttctcag--------cgcagc-g---ccgcggcctcgc----------------- Squirrel -------ggc-----------a--------ggccgc-g---cctgaagcccttccgttattcgcaaaggg Rabbit -------gaa-----------g--------ggccgc-g---t-------ccgt----------------- Pika -------------------------------gacgc-g---tt----aacctt----------------- Human cc-----cgc-----------g--------aaacgc-g-------------------------------- Chimp cc-----cgc-----------g--------aaacgc-g-------------------------------- Bonobo cc-----cgc-----------g--------aaacgc-g-------------------------------- Gorilla cc-----cgc-----------g--------aaacgc-g-------------------------------- Rhesus cc-----cgc-----------g--------aaacgc-g-------------------------------- Marmoset cc-----cgc-----------g--------aaatgc-c-------------------------------- Tarsier cc-----agc-----------g--------ggtcgc-g-------------------------------- Bushbaby cc-----tca-----------a--------aag----g-------------------------------- Tree shrew cc-----cgc-----------c--------aaatgc-g-------------------------------- Pig tcccc--agc-----------t--------gcgcgc-g---gcgcgag---------------------- Dolphin ttccc--agc-----------t--------gcgcgc-g---ggacgag---------------------- Cow ttccc--agc-----------t--------gcgcgc-g---cggcgag---------------------- Sheep ttccc--agc-----------t----------gcgc-g---cggcgag---------------------- Horse tccgccgagc-----------g--------cctgcc-g----aggtcg---------------------- Dog cccgcgaagc-----------g-------cacgccc-g----aggtcg---------------------- Hawaiian monk seal ttctcagggc-----------g--------acgccc-g---ccgagcg---------------------- Hedgehog acc----agc-----------a--------ccagct-ggcatgtcttc---------------------- Shrew gccgcggggc-----------g--------ccgtct-g-------------------------------- Elephant -------agc-----------gcctcggacgcccgc-g---acacgcgcgc------------------- Tenrec -------agc-----------g--------gcccgc-a---------gcgc------------------- Guinea pig NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN Zebrafish ====================================================================== X. tropicalis ====================================================================== Opossum ====================================================================== Chicken ====================================================================== Chinese pangolin ====================================================================== Malayan flying lemur NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN Mouse -------------------------------a----a-gccaga-gtcgc-a-- Rat --------------------------------------gccgga-gtcgc-a-- GCF_003668045 -------------------------------c----a-gctgga-gtcgc-a-- Beaver -------------------------------a----c-gccccaggtcgc-g-- Squirrel gctagaattaaccaaaaaaggaatttcctaaa----g-gccggg-gcctc-g-- Rabbit -------------------------------g----g-cctcgg-gtcgc-g-- Pika -------------------------------a----a-cctggg-gtcgc-a-- Human -------------------------------c----g-ccccgg-gtctc-g-- Chimp -------------------------------c----g-ccccgg-gtctc-g-- Bonobo -------------------------------c----g-ccccgg-gtctc-g-- Gorilla -------------------------------c----g-ccccgg-gtctc-g-- Rhesus -------------------------------c----g-caccgg-gtctc-g-- Marmoset -------------------------------c----g-ccccgg-gtctc-g-- Tarsier -------------------------------c----g-cccagg-gtcgc-g-- Bushbaby -------------------------------c----a-caggag-gtcgc-g-- Tree shrew -------------------------------c----g-cccgag-gtcgc-g-- Pig -------------------------------c----g-gcccgc-acgcc-c-- Dolphin -------------------------------c----g-gtctgc-acgcc-c-- Cow -------------------------------c----g-gcctgt-acgcc-c-- Sheep -------------------------------c----c-ggcggc-gcgac-a-- Horse -------------------------------g----g-ccgtgc-gca---c-- Dog -------------------------------c----g-gcctgc-gggtc-g-- Hawaiian monk seal -------------------------------c----acgcttgc-gggtctg-- Hedgehog -------------------------------c----a-ccctct-gccct-g-- Shrew -------------------------------c----a-gccgcg-aagct-c-- Elephant -------------------------------cctgaa-gtcggg-gccct-gcg Tenrec -------------------------------c----g-gccggt-ggatc-gcg Guinea pig NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN Zebrafish ====================================================== X. tropicalis ====================================================== Opossum ====================================================== Chicken ====================================================== Chinese pangolin ====================================================== Malayan flying lemur NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN Inserts between block 39 and 40 in window B D Pika 71bp B D Human 13bp B D Chimp 13bp B D Bonobo 13bp B D Gorilla 13bp B D Rhesus 13bp B D Marmoset 13bp B D Tarsier 9bp B D Bushbaby 8bp B D Tree shrew 12bp B D Pig 1bp B D Dolphin 1bp B D Cow 1bp B D Sheep 1bp B D Horse 1bp B D Dog 1bp B D Hawaiian monk seal 1bp B D Hedgehog 1bp B D Shrew 1bp Alignment block 40 of 313 in window, 56747250 - 56747257, 8 bps B D Mouse agg-cttgt------ B D Rat agg-cttgt------ GCF_003668045 agg-cttgt------ Beaver cggccctga------ B D Squirrel cag-cctgg------ B D Human -a------------- B D Chimp -a------------- B D Bonobo -a------------- B D Gorilla -a------------- B D Rhesus -g------------- B D Marmoset -a------------- B D Tarsier -a------------- B D Bushbaby -a------------- B D Pig ------agg------ B D Dolphin ------agg------ B D Cow ------agg------ B D Sheep ------agg------ B D Horse ------agg------ B D Dog ------ggg------ B D Hawaiian monk seal ------ggg------ B D Hedgehog ------aag------ B D Shrew ------agg------ B D Elephant -------gggactgc B D Tenrec -------ggca---- B D Guinea pig NNNNNNNNNNNNNNN B D Tree shrew =============== B D Pika =============== B D Zebrafish =============== B D X. tropicalis =============== B D Opossum =============== B D Chicken =============== B D Rabbit --------------- B D Chinese pangolin =============== B D Malayan flying lemur NNNNNNNNNNNNNNN Inserts between block 40 and 41 in window B D Pig 2bp B D Dolphin 2bp B D Cow 2bp B D Sheep 2bp B D Horse 2bp B D Dog 2bp B D Hawaiian monk seal 2bp B D Hedgehog 2bp B D Shrew 2bp Alignment block 41 of 313 in window, 56747258 - 56747297, 40 bps B D Mouse gg-----ga-ggctg-c----g---------------ggctc-------------c-tgtg--------- B D Rat gg-----ga-ggctg-c----g---------------gggtc-------------a-tgtg--------- GCF_003668045 gg-----gc-ggctg-c----g---------------ggc-c-------------c-cgtg--------- Beaver gg-----ga-ccctg-a----g---------------ggacc-------------c-tgtgggaccctgg B D Squirrel ggttctcag-aactg-c----gcccgacatggatcgcggcct-------------c-cgag---ccaggg B D Rabbit ----------agctg-c----acc-------------ggctc-------------c-cgca--------- B D Human -----ctgc-ggctg-c----g---------------gggtc-------------ctcacg--------- B D Chimp -----cggc-ggctg-c----g---------------gggtc-------------ctcacg--------- B D Bonobo -----cggc-ggctg-c----g---------------gggtc-------------ctcacg--------- B D Gorilla -----cggc-ggctg-c----a---------------gggtc-------------ctcacg--------- B D Rhesus -----cagc-ggctg-c----g---------------gggtc-------------ctcagg--------- B D Marmoset -----cggc-ggctg-t---gg---------------gggtc-------------ctcgcg--------- B D Tarsier -----ctgc--gctg-c----g---------------ggctc-------------ctggcg--------- B D Bushbaby -----ccgccggctg-c----a---------------gcgtc-------------cccgcg--------- B D Tree shrew ------ggc-gaacg-c----g---------------gggtc---------------cgtg--------- B D Malayan flying lemur ------ggc-ggcctcc----g---------------gggtc-------------ctcgcg--------- B D Pig --------------g-c----g---------------gccct----gcggct--cctcccg--------- B D Dolphin --------------g-c----g---------------ccgct----gcggct--cctcccg--------- B D Cow --------------g-c----g---------------gcgcc----gcggct--cctcccg--------- B D Sheep --------------g-c----g---------------gcgcc----gcgtct--actcccg--------- B D Horse --------------g-c----g---------------gggcc---------------cacg--------- B D Dog --------------g-c----g---------------gggcc-------------ctcgcg--------- B D Hawaiian monk seal --------------g-c----g---------------gggtc-------------cgcacg--------- B D Hedgehog --------------g-cagcag---------------aggccactggctgctgtcctcatg--------- B D Shrew --------------a-acgtgg---------------gggac-----caggcggccacgcg--------- B D Elephant ---------gggctg-c----c---------------ggggc-------------ctcgcg--------- B D Tenrec ---------gggcgg-t----c---------------gggcc-------------ggcagg--------- B D Guinea pig NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN B D Pika ====================================================================== B D Zebrafish ====================================================================== B D X. tropicalis ====================================================================== B D Opossum ====================================================================== B D Chicken ====================================================================== B D Chinese pangolin ====================================================================== Mouse -------------------------cac-----agaca--gc-------t-cc--------------ctg Rat -------------------------cac-----agaca--gc-------tccc--------------ccg GCF_003668045 -------------------------caa-----agaca--gt-------tccc--------------ctg Beaver ccaccg---------cgcctcgc-cctc-----ggaca--gt-------tccc--------------ctg Squirrel gcgcaggaggatggtcgctcggc-cctg-----gggga--cc-------ccgc--------------ctg Rabbit ---------------gcctccacgcccg-----agccc--gc-------ggcc--------------ctg Human -------------------------ttc-----ggact--tt-------ctct--------------ccg Chimp -------------------------ttc-----ggact--tt-------ctct--------------ccg Bonobo -------------------------ttc-----ggact--tt-------ctct--------------ccg Gorilla -------------------------ttc-----ggact--tt-------ctct--------------ccg Rhesus -------------------------ctc-----ggact--tt-------ccct--------------ccc Marmoset -------------------------ctc-----ggact--tt-------tgcc--------------ccc Tarsier -------------------------ctg-----ggaca--tt-------cccc--------------gcc Bushbaby -------------------------ctc-----ggccaggtc-------cgct--------------act Tree shrew -------------------------gtc-----ggaca--tttc-----tccc--------------act Malayan flying lemur -------------------------ctc-----ggaca--ctgc-----ccct--------------gcc Pig -------------------------tgc-----ggacg--gtcg--gcgccgc--------------ggc Dolphin -------------------------cgc-----gggcg--gt-------ccgc--------------ggc Cow -------------------------cat-----ggacg--gc-------ccgc--------------ggc Sheep -------------------------cgc-----ggacg--gt-------ccgc--------------ggc Horse -------------------------ctc-----ggagc--tgttgcgcgccct--------------ggc Dog -------------------------ccc-----ggcgg--gctctcgtgccgc--------------ggc Hawaiian monk seal -------------------------ctc-----ggaca--tttctcgggccgt--------------ggc Hedgehog -------------------------gta-----ggccg--cttcgcttcccac--------------tcc Shrew -------------------------gtgctcgcgtcca--ctccacccccagc--------------cca Elephant -------------------------ctt-----ggacg--tttcggtgactctcagaaaacgaacaaccg Tenrec -------------------------ctc------------ctgcggaagctcc--------------ctc Guinea pig NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN Pika ====================================================================== Zebrafish ====================================================================== X. tropicalis ====================================================================== Opossum ====================================================================== Chicken ====================================================================== Chinese pangolin ====================================================================== Mouse tc----g Rat tg----c GCF_003668045 cctggac Beaver cg-gtgg Squirrel tggcggg Rabbit cg----- Human g------ Chimp g------ Bonobo g------ Gorilla g------ Rhesus g------ Marmoset g------ Tarsier g------ Bushbaby t------ Tree shrew g------ Malayan flying lemur g------ Pig t------ Dolphin t------ Cow t------ Sheep t------ Horse t------ Dog t------ Hawaiian monk seal t------ Hedgehog a------ Shrew g------ Elephant ------- Tenrec ------- Guinea pig NNNNNNN Pika ======= Zebrafish ======= X. tropicalis ======= Opossum ======= Chicken ======= Chinese pangolin ======= Inserts between block 41 and 42 in window B D Human 4bp B D Chimp 4bp B D Bonobo 4bp B D Gorilla 4bp B D Rhesus 4bp B D Marmoset 4bp B D Tarsier 4bp B D Bushbaby 4bp B D Tree shrew 4bp B D Malayan flying lemur 4bp Alignment block 42 of 313 in window, 56747298 - 56747313, 16 bps B D Mouse t---ggcggacac----ca---------act-t B D Rat t---tccagacat----ca---------gct-t GCF_003668045 t---tccagagac----ca---------gct-t Beaver c---tccaggggc----aagaga----ggct-g B D Squirrel a---cctggagct----cc---------gac-c B D Guinea pig t---gtcggagag----ca---------gcg-c B D Rabbit g---atcagaaac----gagcaagcgtggct-c B D Human t---ctcgg--ac----aaacacgcttggcc-a B D Chimp t---ctcgg--ac----aaacacgcttggcc-a B D Bonobo t---ctcgg--ac----aaacacgcttggcc-a B D Gorilla t---ctcgg--ac----aaacacgcttggcc-a B D Rhesus t---ctcgg--ac----aaatccgcttggcc-a B D Marmoset t---ctcgg--ac----aaacccgcgtggtt-c B D Tarsier g---ctcagaaac----agacaagcgcggct-c B D Bushbaby t---ctaagacac----aaacaagcgtggct-t B D Tree shrew t---ctcggaaac----aaatgagcggggctcc B D Malayan flying lemur t-------------------------------t B D Pig c---cgcgacaag----aggcgc---------- B D Dolphin c---ccagagaac----gggcgc---------- B D Cow c---ccggggcac----aagcgc---------- B D Sheep c---cgcgggcac----aggcgc---------- B D Horse c---ccggaacac----aagcca---------- B D Dog c---cccgaagac----aaacaa---------- B D Hawaiian monk seal c---cccgaaagc----aaacaa---------- B D Hedgehog cgg-tcctaacac----acacag---------- B D Shrew c---tccaggcaccccaacacac---------- B D Elephant -tggcgtgt------------------------ B D Tenrec -tgcccagc------------------------ B D Pika ================================= B D Zebrafish ================================= B D X. tropicalis ================================= B D Opossum ================================= B D Chicken ================================= B D Chinese pangolin ================================= Inserts between block 42 and 43 in window B D Pig 5bp B D Dolphin 5bp B D Cow 5bp B D Sheep 5bp B D Horse 4bp B D Dog 5bp B D Hawaiian monk seal 5bp B D Hedgehog 2bp B D Shrew 2bp Alignment block 43 of 313 in window, 56747314 - 56747330, 17 bps B D Mouse gtcc-----g--------tccggcg-----agaat B D Rat ---------g--------tccggtg-----agaat GCF_003668045 ---------g--------tccggcg-----ataat Beaver ---------g--------acccgcg-----gtaat B D Squirrel ---------g--------ctccccg-----aaggt B D Guinea pig ---------gcgcggtgctgcggcg-----cggag B D Rabbit ---------g--------tcctgcg-----tggta B D Human ---------a--------tcctgcg---------- B D Chimp ---------a--------tcctgcg---------- B D Bonobo ---------a--------tcctgcg---------- B D Gorilla ---------a--------tcctgcg---------- B D Rhesus ---------g--------tcctgtg---------- B D Marmoset ---------c--------tcctgcg---------- B D Tarsier ---------g--------tctt--g---------- B D Bushbaby ---------g--------tcctgcg---------- B D Tree shrew ---------t--------ccttgcgagagt----- B D Malayan flying lemur ---------g--------tcctgcgataga----- B D Pig gctt-----g--------tcccgcg-----acagt B D Dolphin gctg-----g--------tcctgcg-----acggc B D Cow gcgg-----g--------tcccgcg-----acggc B D Sheep gcgg-----g--------ccccgcg-----acggc B D Horse gccg-----g--------tcctgcg-----acagt B D Chinese pangolin gctt-----g--------tcctgcg-----gtaat B D Dog gctt-----g--------ccctgcg-----acggc B D Hawaiian monk seal gctc-----g--------ccctgcg-----atagt B D Hedgehog gcct-----a--------tcctctg-----agagt B D Shrew gcctggcagg--------tcccgtg-----ctcgt B D Elephant ccta-----a--------catgaag---------- B D Tenrec gccg-----g--------ccacacg---------- B D Pika =================================== B D Zebrafish =================================== B D X. tropicalis =================================== B D Opossum =================================== B D Chicken =================================== Inserts between block 43 and 44 in window B D Rabbit 3bp Alignment block 44 of 313 in window, 56747331 - 56747497, 167 bps B D Mouse g-----g--aa--------gaggggcaaccagataaac--g-ta--------------ataaagttac-- B D Rat g-----g--aa--------gaggggcaaccagataaac--g-ta--------------ataaagttac-- GCF_003668045 g-----g--aa--------gaggtgcagccagataaat--g-ta--------------ataaacttac-- Beaver g----cc--gg--------gaggagcaa-caaatgacc--t-ta--------------gtcaagttac-- B D Squirrel ggttccg--agagagacccgaggggcgacccgagaaac--c-ta--------------acagagttac-- B D Guinea pig g-----g--aa--------gaggggccagcggataaac--c-gacgccgtgcgcgcagataaaccgacgc B D Rabbit g-----g--ac--------gtgggacaactaggtaacc--g-cc--------------gtaaagttac-- B D Pika g-----g--aa--------gagggacaacccgataactcga-ta--------------gtaaagtgac-- B D Human ---------ga--------gaggggcacccagataaac--g-ta--------------acaaagctac-- B D Chimp ---------ga--------gaggggcacccagataaac--g-ta--------------acaaagctac-- B D Bonobo ---------ga--------gaggggcacccagataaac--g-ta--------------acaaagctac-- B D Gorilla ---------ga--------gaggggcacccagataaac--gtta--------------acaaagctac-- B D Rhesus ---------aa--------gaggggcactcagataaac--g-ta--------------acagagctac-- B D Marmoset ---------aa--------gaggggcacccagataaac--g-ta--------------acaaagctac-- B D Tarsier ---------ga--------gaggggcgacc-gataaac--g-ta--------------atgaggttac-- B D Bushbaby ---------aa--------gaggggcaaccagataaac--g-tt--------------ataaagtaac-- B D Tree shrew ------ggaaa--------gaggggcaaccagataaat-gg-ta--------------ataaagttac-- B D Malayan flying lemur ------gagga--------gaggggcagccagataaac--a-ca--------------ggaaagtcac-- B D Pig -------gagg--------agcgagcaggcggagagac--c-tg--------------gtaaagttgc-- B D Dolphin -------gagg--------agagggcaagcagataaac--t-gc----------------gtagttac-- B D Cow -------gagt--------agagggcagccagagaaac--t-tc--------------agacagttcc-- B D Sheep -------gagt--------agagggccgccagagaaac--t-tc--------------agacagttcc-- B D Horse -------gaga--------ggagggcaagcagataaac--g-ca--------------gtaaagttac-- B D Chinese pangolin -------caga--------agaaggcaaccagataaac--t-ta--------------ataaagttac-- B D Dog -------gaag--------agagggccaccagataaac--c-ta--------------ataaagttac-- B D Hawaiian monk seal -------gaag--------agagggcaaccagataaac--t-ta--------------ata---ttac-- B D Hedgehog -------gaga--------aggggcccaccagataaac--c-ta--------------atgaagttac-- B D Shrew -------gaga--------agggggcgatcagatcaac--c-gg--------------caaaagtgac-- B D Elephant -------ggaa--------gaggggcaaccagacaaac--t-ca--------------ataaagttac-- B D Tenrec -------ggaa--------gagggacagccggatgaac--g-ta--------------atgaagttac--