Multiz Alignments of 35 Vertebrates

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Capitalize exons based on show bases

Place cursor over species for alignment detail. Click on 'B' to link to browser for aligned species, click on 'D' to get DNA for aligned species.
Alignment block 1 of 407 in window, 56747477 - 56747497, 21 bps B D Mouse cttttactctc------tgaaa----------gaaaa B D Rat cctctactctc------tgaaa----------gaaaa GCF_003668045 cctctactctc------tgaag----------gaaaa Beaver cccctactctc------caaaa----------ggaaa B D Squirrel ccccaactctc------caaaa----------taaaa B D Guinea pig ctttgactctc------cagaa----------gaaaa B D Rabbit ccccgattctc------caaaa----------gaaaa B D Pika ccccggttctc------caaaa----------agaaa B D Human cctcatgtctc------caaag----------gaaaa B D Chimp cctcatgtctc------caaag----------gaaaa B D Bonobo cctcatgtctc------caaag----------gaaaa B D Gorilla cctcatgtctc------caaag----------gaaaa B D Rhesus cctcatgtctc------caaag----------gaaaa B D Marmoset cctcaagtctc------caaag----------gaaaa B D Tarsier ccccaaccctc------caaaa----------gaaaa B D Bushbaby ccccaattctc------caaaa----------gaaaa B D Tree shrew ccccaactctc------caaaa----------gaata B D Malayan flying lemur ctctgactctc------caaaa----------gaaaa B D Pig ccccgactctc------taaaa----------gaaaa B D Dolphin ccccgactctc------cataa----------gaaaa B D Cow cctcgactctc------caaaa----------gaaaa B D Sheep cctcgactctc------caaaa----------gaaaa B D Horse ccccaactctcaaaaaaaaaaa----------aaaaa B D Chinese pangolin ccccgactctc------cgaaa----------gaaaa B D Dog ccccgactctg------cagaa----------gaaaa B D Hawaiian monk seal ccccgactctg------caaaa----------gaaaa B D Hedgehog cccccacttcc------aaaaaaaaaaaagttgaaaa B D Shrew ccccgactctc------agaaa----------gaaac B D Elephant cctccactctc------caaga----------gaaaa B D Tenrec ctcctactctc------ccaaa----------gaaaa B D Opossum ccccatttttc--------aaa----------gaaaa B D Zebrafish ===================================== B D X. tropicalis ===================================== B D Chicken ===================================== Inserts between block 1 and 2 in window B D Opossum 3607bp Alignment block 2 of 407 in window, 56747498 - 56747943, 446 bps B D Mouse tttaaaaca-ctga-----t-----ttttt-----cccttttttcc--------c---cc---tccttga B D Rat tttaaaaca-ctgg-----tgtttcttttt-----ttttttttttc--------t---cc---tccttga GCF_003668045 tttaaaaca-ctcg-----t-----gcttc-----cttttcttttt--------t---cc---ccgttga Beaver tttaaaaca-ctcg-----t-----gtttt-----gttgttttttc--------t---tc---c---tga B D Squirrel tttaaaaca-cttg-----t-----g---------------tcccc--------c---tc---cccctgg B D Guinea pig gtgaaaaca-ctcc-----t-----gtttt-------------------------------------taa B D Rabbit tgtcaaacg-ctcg-----c-----gatct-----gggctttccct--------g---a----------- B D Pika attcaaa-a-cacc-----c-----gttct-----gtgttttacct--------t---ac---------g B D Human tttaaaaca-ctcg-----t-----gtttt------------tatt--------t---tc---cccccga B D Chimp tttaaaaca-ctcg-----t-----gtttt------------tatt--------t---tc---cccccga B D Bonobo tttaaaaca-ctcg-----t-----gtttt------------tatt--------t---tc---cccccga B D Gorilla tttaaaaca-ctcg-----t-----gtttt------------tatt--------tccccc---cccccga B D Rhesus tttaaaaca-ctcg-----t-----gtttt------------t---------------tc---cccccga B D Marmoset tttaaaaca-ccgg-----t-----gtttt------------c-tt--------t---tc---ccccaga B D Tarsier tttaaaaca-ctcg-----t-----gttttg----ctgggggtttt--------t---ct---cccctga B D Bushbaby tttaaaaca-cttg-----t-----gtcct------------cccc--------cc--ac---cccccgc B D Tree shrew cttaaaaca-ctcg-----t-----gattt-----------ttttt--------t---tt---tccctga B D Malayan flying lemur tttaaaaca-ctcg-----t-----gtttt-----attttatttta--------t---tt---ttcctga B D Pig attaaaaca-cccg-----t-----gt----------tcttttttt--------t---cc---cccttga B D Dolphin attaaaaca-cccg-----t-----gtt---------ttttttttt--------c---tt---cctttga B D Cow cttaaaacaccccg-----t-----gttgttgt----ttttttttc--------t---tt---tccttga B D Sheep cttgaaacaccccg-----t-----gttgttgt--tgttgtttttc--------t---tt---tccttga B D Horse attaaaaca-cccg-----t-----gg------------ttttttt--------t---tt---tccctga B D Chinese pangolin tttaaaaca-cccg-----t-----gt------------tttgttttgttttgct---tt---ttcctga B D Dog attaaaaca-ctcg-----t-----g--------------ttttta--------t---tc---cccctga B D Hawaiian monk seal attaaaaca-ctcg-----t-----g-------------ttttttt--------t---tc---cccctga B D Hedgehog agtaaaaca-ttca-----t-----tttcttccacc------tcta--------t---cc---ctcctga B D Shrew agggaaaca-cccgtctttt-----ttttttccccccttccttctt--------c---tt---cccctga B D Elephant a----aaca-ccca-----c-----------------------ttt--------t---cc---cccctga B D Tenrec gt---tacc-ccca-----c-----------------------ccc--------t---tccaactctcca B D Zebrafish ====================================================================== B D X. tropicalis ====================================================================== B D Opossum ====================================================================== B D Chicken ====================================================================== Mouse gaagaattaagcaaccgccacacgaa------------ag-------tgtg-agtccaaa-ttcgtc--- Rat gaagaatgaagcaacagtcacacaaa------------ag-------tgtg-agtccaaatttcgtc--- GCF_003668045 gaagaactaagcagccgccacacaaa------------ac-------cgtg-agtccaaa-tatatc--- Beaver gaaaagctaaacaaccgtgacaataaaag--ccc---gag-------tctg-agtctaag-ttcatccct Squirrel gggaggctaaggaatcaccacaaggaaac--cccaa-gag-------actg-agtctaaa-ttccgc--- Guinea pig aaacctctgagcactcactacaacaaaag--cccg---ag-------gctg-agtctgaa-ttcatg--- Rabbit -----------caaccg---------------ccgggagg-------tttg-attctaaa-ttcatc--- Pika aaaaagctaagcgaccgctccaacagacg--cccaagagg-------gtcg-agtctaaa-ttcatc--- Human gaaaagctaaacaaccaccacaacaaaag--cccca--ga-------ttta-agtctaaa-ttcatc--- Chimp gaaaagctaaacaaccaccacaacaaaag--cccca--ga-------ttta-agtctaaa-ttcatc--- Bonobo gaaaagctaaacaaccaccacaacaaaag--cccca--ga-------ttta-agtctaaa-ttcatc--- Gorilla gaaaagctaaacaatcaccacaacaaaag--cccca--ga-------ttta-agtctaaa-ttcatc--- Rhesus gaaaagctaagcaaccaccacaacaaaag--cccca--ga-------ttta-agtctaaa-ttcatc--- Marmoset gaaaagctaagcaaccaccacaacaaaag--ctcca--ga-------ttta-agtctaaa-ttcatc--- Tarsier gaaaagccaagcaaccaccgccacaaaag--cccaa--gagt-----gttg-agtctaaa-tgcatc--- Bushbaby aaaaatctaagcaaaccccaccacaaaag--ctggc--gt-------ttgg-ggtctaag-ttcatc--- Tree shrew gaaaagctaagca---accacaacaaacg--ctcaa--gagt-----tttg-ggtctaaa-ttcatc--- Malayan flying lemur gagaagctaagcaaccaccacaacaaaag--tccaa--gagt-----tttgagatttaaa-ttcacc--- Pig gaataactaagcaaccacaacaacaaaag--cccaa--gaat-----tttg-agtctaaa-ttcatc--- Dolphin gaaaaactaagcaaccacaacaacagaag--cccag--gagt-----tttg-agtttata-ttcatc--- Cow gaaaagctaaacaaccataacaacaaaag--ccccc--gagt-----tttg-agtctaaa-ttcatc--- Sheep gaaaagctaaacaaccgtaacaacaaaag--cccca--gagt-----tttg-agtctaaa-ttcatc--- Horse gaaaaactactcaaccacaccaacaaaaa--tccaa--gagt-----tttg-agtctaaa-ttcatc--- Chinese pangolin gaaaaaataagcaattacagcaataaaaaagcccac--gagt-----tttg-agtctaaa-ttcttc--- Dog ggaaaactaagcaaccaccaccacaaaag--cccta--gagt-----tttg-agtctaaa-ttcatc--- Hawaiian monk seal gaaaaactaagcaaccaccaccacaaaag--cccta--gagt-----ttta-agtctaaa-ttcatc--- Hedgehog aaaac--taagcagccacaacagcacaag--cctac--gagtt----tttg-aatctaaa-ttcatc--- Shrew gtaacaatgagcaagcacaatagcaaaag--cccag--gggtttaagtctg-aat-taaa-gtcacc--- Elephant gaaaagctacgctaccaccaccacaaaag--cccaa--gaat-----tttg-ggtctaaa-ttcatc--- Tenrec gaaaagct--------gctaccacaaaag--cccaa--gaat-----tttg-tgtctaaa-tttatc--- Zebrafish ====================================================================== X. tropicalis ====================================================================== Opossum ====================================================================== Chicken ====================================================================== Mouse a-gtac----gttagaatgaagacgagtttaaaa--ct--c-aaat------------------------ Rat a-gtat----gctagaatgaa---gagttcaaaa--ct--c-aaat------------------------ GCF_003668045 a-gtat----gctagaatgaa---gatttcaaaa--ct--c-aaat------------------------ Beaver a-ctat----gctagagtcaa---gacttcaaacctct--c-aaaa------------------------ Squirrel a-ctaa----gatag--tcaa---gagttggaaactct--c-aaaa------------------------ Guinea pig a-ctattctcactggagtcaa---gaattcaaaa--ct--c-gtaa------------------------ Rabbit a-ccac----gctggagtcaa---gagttcaaaactct--c-aaaa------------------------ Pika a-ccac----gctggagtcaa---gagttcaaaactct--c-agaa------------------------ Human a-ccgt----cctggagtcaa---gagttcaaaactct--caaaaa------------------------ Chimp a-ccgt----cctggagtcaa---gagttcaaaactct--caaaaa------------------------ Bonobo a-ccgt----cctggagtcaa---gagttcaaaactct--caaaaa------------------------ Gorilla a-ccgt----cctggagtcaa---gagttcaaaactct--c-aaaa------------------------ Rhesus a-ccgt----cctggagtcaa---gagttcaaaactct--c-aaaa------------------------ Marmoset a-ccgc----cgtggagtcaa---gagttcaaaactct--c-aaaa------------------------ Tarsier a-ccat----gttggaatcaa---gagttcaaaactct--c-aaaa------------------------ Bushbaby a-ccat----gctggagttga---gagttcaaaacttt--c-taaa------------------------ Tree shrew a-gcac----attggagtcaa---gagttcaaaactcc-ac-aaaa------------------------ Malayan flying lemur a-ctac----gctggagtcaa---gagttcaaaactct--c-aacc------------------------ Pig a-ccag----gctggagtttg---gagttctaaattct--c-aaaaaccct--cac-------------- Dolphin a-ccac----ggtggagtcag---gagttcaaagctct--c-aaaaaagca--aacaacaacaaa----- Cow a-ccac----ggtggagtcag---gagttcaaagctct--c-aaaaaacca--aac-------------- Sheep a-ccac----ggtggagtcag---gagttcaaagctcg--c-aaaaaacca--aac-------------- Horse a-ccgc----gctcgagtcag---gagctccaagctct--c-agaagcc--------------------c Chinese pangolin a-tcac----gctggagtcag---gagtccaaagctct--c-aaaaaccaa--aaca-aaatgcaaaaac Dog a-tcat----gatggagtcag---gggttcaaacctct--g-aaacacaca--cacacacacacacacac Hawaiian monk seal a-ccag----gatggagtctg---gagctcaaagctct--g-aaaagcaag--caaacaaacaca----- Hedgehog a-tgaa----actggagccag---gagttcaaaatttt--c-aataagcaa--atc-------------- Shrew actcgg----gatggagtcag---gagtataaagttct--t-agaaaacaaacaca-------------- Elephant a-tcac----cccggagtcag---gagttgcaaacttaaac-aaaaacaaacaaacaaacg--------- Tenrec a-ccac----ctcaag-------------ccaaactta----aaaaaaagaagaagaaagg--------- Zebrafish ====================================================================== X. tropicalis ====================================================================== Opossum ====================================================================== Chicken ====================================================================== Mouse -------ggca------------------aaacttcaaggcactgtacgg--tattcccg---------- Rat -------ggca------------------aaacttcaaggcagtgtgcct--tattcccg---------- GCF_003668045 -------gcgg------------------a---cttaaggcagtgtaagg--catttacg---------- Beaver -------accg------------------g-cctttaaggcagcataagg--ttttccta------ctt- Squirrel -------accg------------------gactttgaaggcagactgaga--tgtccttgagcagacct- Guinea pig -------tggg------------------a--ctttaaggcagagtgagg--ttttcctgagcagactt- Rabbit -------accg------------------gaccttcggg-cagcgggagg--tttcccggagcagccct- Pika -------accg------------------gactttcgggccagcgggagg--tttcccggagcaaacct- Human -------accg------------------gacc-ttaaggcaatgtaagg--tttcccc-agcagaccc- Chimp -------accg------------------gacc-ttaaggcaatgtaagg--tttcccc-agcagaccc- Bonobo -------accg------------------gacc-ttaaggcaatgtaagg--tttcccc-agcagaccc- Gorilla -------accg------------------gacc-ttaaggcaatgtaagg--tttcccc-agcagaccc- Rhesus -------accg------------------aacc-ttaaggcaatgtaagg--tttcccc-agcagacct- Marmoset -------acct------------------gatc-ttaaggcagtgtaaga--tttcccc-agcagacct- Tarsier -------accg------------------gaac-ttaaggcagcgtgagg--tttccctgagcagacct- Bushbaby -------acgg------------------gacctttaagagaatgcgagg--ttttcttgagtagacat- Tree shrew -------actg------------------aacc-ttaaaccagcgtaagggttttcctg-agcggacct- Malayan flying lemur -------accg------------------gacc-ttaagactatgtaagg--tttcccg-ggcagacct- Pig -------aacaagtaaccca---------gacc-ttagagcagg--------tttctctgagc------- Dolphin -------aaca---aacctg---------gacc-ttaaagcagcgtaagg--tttatttgagcagacct- Cow -------aaca---aagccg---------gacc-t-------------------tctttgaacagaccta Sheep -------aaca---aagccg---------gacc-t-----------------tctctctgaacagacct- Horse ctccccaccca---aagccgca-------gacc-ttaaagcagcgaaagc--tttctttgagcagacct- Chinese pangolin aaaacaaaaca---aaactg---------gacc-ttaaacgaatggaag---tttcttagagtatacct- Dog acacacacaca---cacacacacggacctgacc-tgaaggcagcctaagg--tttctaagagcggatct- Hawaiian monk seal -----------------------------gatc-ttaaggcagcctaagg--tttcttagagcagatct- Hedgehog -------agca---aagcaaag-------gatg-ttaaggca-------------gttggaccagatct- Shrew -------aaca---aacaaaag-------ggcg-gcaaagcaccccaggt--ttcattgg-tcagacct- Elephant -------aaag------------------gatg-tt-aagcctcctaagg--tttcctttggcagaact- Tenrec -------aaaa------------------gatg-ctaaaggcatttacag--tgtccttgagcagaact- Zebrafish ====================================================================== X. tropicalis ====================================================================== Opossum ====================================================================== Chicken ====================================================================== Mouse ------------------------------------------------------a--------------- Rat ------------------------------------------------------a--------------- GCF_003668045 ------------------------------------------------------g--------------- Beaver g------gg--------------------------------------------ta--------------- Squirrel c------tg--------------------------------------------ta--------------- Guinea pig a------gg--------------------------------------------ca--------------- Rabbit g------gg--------------------------------------------ct--------------- Pika g------gc--------------------------------------------tt--------------- Human c------ag--------------------------------------------ta--------------- Chimp c------ag--------------------------------------------ta--------------- Bonobo c------ag--------------------------------------------ta--------------- Gorilla c------ag--------------------------------------------ta--------------- Rhesus c------ag--------------------------------------------ta--------------- Marmoset c------ag--------------------------------------------ta--------------- Tarsier g------gg--------------------------------------------taggtttgcagtttttt Bushbaby g------gg--------------------------------------------ta--------------- Tree shrew g------gg--------------------------------------------aa--------------- Malayan flying lemur g------gg--------------------------------------------ta--------------- Pig agacctgcg--------------------------------------------ta--------------- Dolphin g------tg--------------------------------------------ta--------------- Cow a------tg--------------------------------------------ta--------------- Sheep a------tg--------------------------------------------ta--------------- Horse g------ag--------------------------------------------ta--------------- Chinese pangolin g------gg--------------------------------------------tg--------------- Dog g------cg--------------------------------------------ta--------------- Hawaiian monk seal g------gg--------------------------------------------ta--------------- Hedgehog g-----agg--------------------------------------------ta--------------- Shrew g------gg--------------------------------------------ta--------------- Elephant g------gg--------------------------------------------ta--------------- Tenrec g------gggcaaacccttcaaaactccctgcccttcagccggttccccctcaga--------------- Zebrafish ====================================================================== X. tropicalis ====================================================================== Opossum ====================================================================== Chicken ====================================================================== Mouse ------------------------------------agt---------------------agacgccacc Rat ------------------------------------agt---------------------ag-----acc GCF_003668045 ------------------------------------agt---------------------agactccacc Beaver ------------------------------------agtttg-----------taactccaaactccaat Squirrel ------------------------------------ggtttgc--aaatttcttaatcctcaactccaac Guinea pig ------------------------------------cctctgc--aaatttcttcatcccaaactccagt Rabbit ------------------------------------ggtttgc--aaattgcttcatcccagaggccagt Pika ------------------------------------ga-----------------acctcccgctccaac Human ------------------------------------ggtttgc--aaatctcttaatcccaaactc-aat Chimp ------------------------------------ggtttgc--aaatctcttaatcccaaactc-aat Bonobo ------------------------------------ggtttgc--aaatctcttaatcccaaactc-aat Gorilla ------------------------------------ggtttgc--aaatctcttaatcccaaactc-aat Rhesus ------------------------------------ggtttgc--aaatttcttaatcccaaactc-aat Marmoset ------------------------------------ggtttgc--aaatttcttaatccaaaattctaat Tarsier tttaaaaatggttaaacctatttaattatccattttggtttgc--aaatttcttaatctcaaactccaat Bushbaby ------------------------------------ggtttgc--aaatttctgagtcac-------aat Tree shrew ------------------------------------ggtctgc--aaatgtcttagtcccagacttcaat Malayan flying lemur ------------------------------------ggtttgc--aagttgcttaaacccaaactctaat Pig ------------------------------------ggtttgc--aaaattattcataccaaactccaga Dolphin ------------------------------------ggtttgc--aaatttattcataccaaactccaat Cow ------------------------------------ggtttgc--aaatttattcatgccaaactcctat Sheep ------------------------------------ggtttgc--aaatttattcatgccaaactcctat Horse ------------------------------------ggtttgc--gaatttcctaataccaaactccaat Chinese pangolin ------------------------------------agtttgc--tgattgtttcttacgaaactccaat Dog ------------------------------------gatttgc--aaatttcttaatcccaaactccaat Hawaiian monk seal ------------------------------------gatttgc--aaatttcttaataccaaattctaat Hedgehog ------------------------------------gggttacaaatatttcttaatagtaaacgccaat Shrew ------------------------------------gctttgc--ccatttctt-------aacactaat Elephant ------------------------------------gatttgc--aaggttcttaatcctaaaccccaat Tenrec ------------------------------------ggtctgc--aaatgccttcatcctaaatcccagc Zebrafish ====================================================================== X. tropicalis ====================================================================== Opossum ====================================================================== Chicken ====================================================================== Mouse tccaaagcttcaa-agtact------------tagt-----------------cttattttaaagcctta Rat tccaaagcctcaa-cgtact------------tagt-----------------cttattttagagcctta GCF_003668045 ttggaagcttcaa-agtact------------tagt-----------------gttatcttaaagcctca Beaver tccaaagccttaa-aacacg------------tagtttttt-tttcttttttcttttttttgaagtctta Squirrel ttcaaagcctcaa-aatact------------tagtttttg-tttg-------attattttgaaggctta Guinea pig accaaagcctcaa-aatatg------------tatttttcg-tttg-------attatcttaaagtctta Rabbit cccacagcctcaa-aacact--------------gtttcgg-tttggtttt--attatttcgaagtctta Pika gccacagcttcag-agcgct--------------gtttggg-tt--------------------gtatta Human tccaaagcctcaa-gctatt------------cagttttcc-tttt-------attattttgaagactta Chimp tccaaagcctcaa-gctatt------------cagttttcc-tttt-------attattttgaagactta Bonobo tccaaagcctcaa-gctatt------------cagttttcc-tttt-------attattttgaagactta Gorilla tccaaagcctcaa-gctatt------------cagttttcg-tttt-------attattttgaagactta Rhesus tccaaagcctcaa-gctatt------------cagttttcg-tttt-------attattttgaagactta Marmoset tccaaagcctcaa-gctatt------------cagttttcg-tttt-------attattttgaagtctta Tarsier accagagcttcaa-actaca------------cagtttatg-tttt-------attattttgaagtcttg Bushbaby tccaaagcctcaa-actact------------caattttca-ttgc-------attattttgaagtctta Tree shrew gccaaagtctcagaaatact------------aagttttcg-tttt-------cttattttgaagccttt Malayan flying lemur tctgaagccttcg-aatact------------cagttttcg-tttt-------attattttgaagtcttt Pig tcta-agcctcaa-aagacc------------cggttttcg-tt----------ttattttgaaatctta Dolphin tccaaagcctcaa-aatacc------------cagttttca-tttt-------attattttgaaatctta Cow tccagagcctcaa-agtact------------cagttttcg-tttt-------attattttgaaatctta Sheep tccagagtctcaa-aatacc------------cagttttcg-tttt-------attattttgaaatctta Horse tctaaagcctcaa-aatacc------------cagttttcg-tttt-------attattttgaagtctta Chinese pangolin tccaaagcctcaa-aatatc------------cagtttccg-tttt-------attattttgaattatta Dog tccaaagcctcaa-aatacc--------------gtttgca-tttt-------attattttgaagccgta Hawaiian monk seal tccaaagcctcaa-aatacc------------caattttcgttttt-------attattgtgaagtcata Hedgehog tccaaagctttaa-aaaatctttttttttttttttttttttttttt-------accattttgaagtgttt Shrew tcccaagcctcca-aacacc------------cactttcccctttg-------atcatgttgaagtcttt Elephant gccaaagtctgaa-aatact------------cagctttta-tttt-------attactttgaagcctta Tenrec tccagaggtgcaa-gttgcc------------caatttctg-ttgt-------agtctttcgaaccctta Zebrafish ====================================================================== X. tropicalis ====================================================================== Opossum ====================================================================== Chicken ====================================================================== Mouse aaacttttt-t-tta---tgtcttctca-------aaaatcagtt----------------------tta Rat aa----ttt-t-ttaaagtgtcttctca-------aaaatcagtt------------------at-aata GCF_003668045 aaa---ctt-t-tta---tttcttgtc--------aaaatcagtt------------------ac-aata Beaver aaa---ctt-t-taa---tgttttgtc---------aaatcagct-----------------ttt-aaaa Squirrel caa---agt-t-taa---tgctttcttacaggtt-aaaatcagctgttaaacttattattaataa-atta Guinea pig aaa---ctt-t-caa---catttccttg-------gaagtcagct----------------tcta-aaaa Rabbit aaa---ctc-c-tac---tgttttcctatctgtc-caagtcggct-----------------tttcaaaa Pika aca---ctc-cgcgg---ggttttctcatctgtc-cacatcaact-----------------tgt-aaaa Human aaa---ttt-t-taa---tgcttttttgtctgtc-aaaatcagct-----------------ttt-aaaa Chimp aaa---ttt-t-taa---tgtttttttgtctgtc-aaaatcagct-----------------ttt-aaaa Bonobo aaa---ttt-t-taa---tgtttttttgtctgtc-aaaatcagct-----------------ttt-aaaa Gorilla aaa---ttt-t-taa---tgttttcttgtctgtc-aagatcagct-----------------ttt-aaaa Rhesus aaa---ttt-t-taa---tgttttcttatctgtc-aaaatcagct-----------------ttt-aaca Marmoset aaa---ttt-t-taa---agttttcttatctgtc-aaaattagcc-----------------tttaaaaa Tarsier aaa---cgt-t-tga---tgtttacttgtctgtc-aaaatcagct-----------------ttt-gaaa Bushbaby aac---ttt-t-aga---tgttttcttatctgtc-aaaacgaact-----------------ttt-aaaa Tree shrew aaa---acgtt-taa---tgttttctt---tgtc-aaaatcagat-----------------ttt-aaaa Malayan flying lemur aaa---ctg-t-taa---tgttttcttatctgtc-aaaatcagct-----------------ttt-aaga Pig aaa---cat-t-taa---tgttttcttatctgta-aaaatcagct-----------------ttt-taag Dolphin aaa---ctt-t-taa---tgttttcttatctgtt-aaaataaact-----------------ttt-taag Cow aaa---ctt-t-gaa---tgttttcatatctgta-aaaatcagtt-----------------ttt-tccg Sheep aaa---ctt-t-caa---tgttttcatat--------aatcagtt-----------------ttt-tcca Horse aaa---ctt-t-taa---tgttttcttatctgtt-aaaatcagct-----------------ctt-tagt Chinese pangolin aac---ctt-c-taa---agtt---ttatcggtt-caaatcagct-----------------ttt-tagg Dog aaa---ctc-c-ta----tgttttcttatctgtc-aaaattagcg-----------------ttt-taca Hawaiian monk seal gaa---ctc-t-tag---tgttttcttatctgtc-aaaatcagcg-----------------ttt-t--- Hedgehog a------------ag---tattttcttacctgtc-aaattcaact-----------------ttt-taag Shrew --------------g---cgttttcttccgtgtcaaaagtcaaca-----------------ttt-gaag Elephant aaa---ctt-t-tag---tgccttcttatctgtcaaaaaccagct-----------------ttt-taaa Tenrec caa---cat-t-gca---tgctttcttaactgcccacacccagct-----------------ttt-caaa Zebrafish ====================================================================== X. tropicalis ====================================================================== Opossum ====================================================================== Chicken ====================================================================== Mouse tttatt-gg-aattta-ttattcttatcta-------------------------------------t-- Rat tttgtt-gg-aattta-ttatttttatcta-------------------------------------t-- GCF_003668045 tttatt-gg-aactta-ttatccttatcca-------------------------------------t-- Beaver ttaaga-tg-aactta-ttattattattcg-------------------------------------t-- Squirrel ttaata-at-aatgta-ttattcttattca-------------------------------------t-- Guinea pig ttaagt-ga-aacttg-ttattttcattca-------------------------------------c-- Rabbit ttagat-ag-aacttg-ctcctctcactca-------------------------------------tct Pika ttaggtcag-aacgtg-ctattcttactct-------------------------------------ccc Human ttaagt-gg-aatttg-ttcctcttattca-------------------------------------ct- Chimp ttaagt-gg-aatttg-ttcctcttattca-------------------------------------ct- Bonobo ttaagt-gg-aatttg-ttcctcttattca-------------------------------------ct- Gorilla ttaagt-gg-aatttg-ttcctcttattca-------------------------------------ct- Rhesus ttaagt-gg-aacttg-ttcctctcattca-------------------------------------ct- Marmoset ttaagt-gg-aacgtg-tccctcttattca-------------------------------------ca- Tarsier ttaatt-ga-aacatg-ttactcttattca-------------------------------------gt- Bushbaby ttaagt-gg-aattcg-ttcctcttattca-------------------------------------gt- Tree shrew ttaaat-gg-aagtgg-tcactcctatgca-------------------------------------ct- Malayan flying lemur ttaagt-gg-aacatg-ttactctaatcca-------------------------------------ct- Pig tgaaat-gg-aactcg-taactttgggtca-------------------------------------ct- Dolphin cacaat-ag-aacttg-caacgtttattca-------------------------------------at- Cow ctcagt-ga-aacttg-taacttttattca-------------------------------------ct- Sheep ctcaat-gg-aacttg-tagctcttattca-------------------------------------ct- Horse ggaa-t-gg-aacttg-ttacttttattcg-------------------------------------ct- Chinese pangolin tgaa-----------a-ttacttttattta-------------------------------------ct- Dog tgaaat-gt-aacttg-ttacttttattca-------------------------------------ct- Hawaiian monk seal -----------acttg-ttacttttgttca-------------------------------------ct- Hedgehog tggaag-ggaaatttgatagtttttattaa-------------------------------------tg- Shrew taaaat-ag-aacttattaagtcttactaactttggtggtggtggtgtgagtgtgtgtgtgtatgtgtg- Elephant ttaaat-ga-aatttg-ctacttctattca-------------------------------------ct- Tenrec ctaaat-ga-aatttg-ctacttctgttcc-------------------------------------ct- Zebrafish ====================================================================== X. tropicalis ====================================================================== Opossum ====================================================================== Chicken ====================================================================== Mouse ----t-g-------ag---------------gggtta--tcc-t-aatcatc-a-ctgtcgttaacaaat Rat ----t-g-------gg---------------cggata--tcc-t-aaccat-----tttcgctaataaat GCF_003668045 ----t-g-------gg----------------ggaca--tcc-c-aaccatc-a-ttttctctaacaaat Beaver ----t-g-------gg---------------ggaaaa--act-t-agttgtt-a-ttttctctcacaaac Squirrel ----g-g-------gggacagcccggtgtgtgtgtga--tcc-t-agtcact-a-ttttctctaacaaag Guinea pig ----t-g-------gg---------------gggaaa--tcc-t----cacg-c-atttctctaa-ggag Rabbit t---g-g-------ga---------------tggaac--tcc-t-agtcgat-a-ttctgcgtcccagtt Pika tcagg-g-------aa---------------gaaaac--tcc-g-ggtggttcg-ttttgtgtgacaatt Human ----t-g-------aa---------------aaaaca--tct-t-agtcatt-a-ttttctgtaacaaat Chimp ----t-g-------aa---------------aaaaca--tct-t-agtcatt-a-ttttctgtaacaaat Bonobo ----t-g-------aa---------------aaaaca--tct-t-agtcatt-a-ttttctgtaacaaat Gorilla ----t-g-------aa---------------aaaaca--tct-t-agtcatt-a-ttttctgtaacaaat Rhesus ----t-g-------ca---------------aaaaaa--tcc-t-ggtcatt-a-ttttctgtaacaaat Marmoset ----t-g-------gc---------------aaaaaa--tcc-t-agtcgtt-g-ttttctgtaacaaat Tarsier ----tgg-------aa---------------aaaaaa--tcc-t-agtcatc-a-ttttttctaacaaat Bushbaby ----t-g-------ag---------------aaaaaac-tct-t-attcatt-a-ttttctctaacaaat Tree shrew ----t-g-------ga---------------aaaaagagtct-t-agtcctt-a-ttttccctaataagt Malayan flying lemur ----t-g-------ga---------------aaacc---cctgt-agccgtt-a-ttttctctaacaaat Pig ----t-g-------gg-------------aaaaaaaa--gcc-tcagtcgtt-a-ttttctctaacaaac Dolphin ----t-g-------gg-------------aaaaaaaa--tcc-t-agtcttt-a-ttttccctaacaaac Cow ----t-g-------ga-------------aaaaaaaa--tcc-t-agtcttt-a-ttttctctaacaaac Sheep ----c-g-------gg-------------agaaaaaa--tcc-t-agtcttt-a-ttttctctaacagac Horse ----t-g-------gg---------------aaaaaa--tcc-t-agtcgtt-a-ttttctctgacaaac Chinese pangolin ----t-g-------gg---------------gaaaaa--tcc-t-aatcgtt-a-ttttctctaacgaac Dog ----t-g-------gg-------------aaaaaaaa--tcc-t-catcctt-a-ttttctctaacaaac Hawaiian monk seal ----t-g-------gg---------------aaaaaa--tcc-t-aatcctt-g-ttttcttgaacaaac Hedgehog ----t-g-------gg---------------gggaaa--tcc-t-agttgtt-atttttccctaacaaac Shrew ----t-g-------tg---------------tggggt--gcc-t-agtctgt-a-ttttctctaacaaat Elephant ----t-gtaaaaaaaa---------------aaaaaa--atc-a-ag-ggtg-atttttctctaacaaag Tenrec ----t-gt------ga---------------aaaata--tcc-a-agtggtg-a-ttttctcaaacaaat Zebrafish ====================================================================== X. tropicalis ====================================================================== Opossum ====================================================================== Chicken ====================================================================== Mouse tacattttg--------atttcctcttctctctcaaggtttgt-----------cagaat-tc------- Rat cgcattttg--------atttcctcgtctctctcaaggtttgt-----------cagaat-tc------- GCF_003668045 tacatttct--------atttcctagtccctctcaagtattgt-----------caggat-gc------- Beaver tctatttcc--------acttccgtttccgtccttagttttgttcaa------gtagaat-taaaatgag Squirrel cccatttcc--------acttcctcttccctccctgatttcgttcaatcagagtcagaat-gc------- Guinea pig cccgtttcc--------acgtcctcttccctctcagtttttgttaaag------cagggt-ga------- Rabbit cttgg---c--------gcttcc-ctgcccaccctcgtttgtt-----------tgaagcttc------- Pika ttcaagtcc--------acttcc-ctgcccgcccttggttggt-----------gggagc-ac------- Human cccatttcc--------acttcctcttccctctcttattttgttgaaatagaatcagaat-ac------- Chimp cccatttcc--------acttcctcttccctctcttattttgttgaaatagaatcagaat-ac------- Bonobo cccatttcc--------acttcctcttccctctcttattttgttgaaatagaatcagaat-ac------- Gorilla tccatttcc--------acttcctcttccctctcttattttgttgaaatagaatcagaat-ac------- Rhesus cccatttcc--------acttcctcttccctctcttattttgttgaaatagaatcagaat-ac------- Marmoset cccatttcc--------acgtcctcttccttctctta-ttcgttgaagctgaatcagaat-ac------- Tarsier cctgtttcc--------atgtcctcttgtctcttgtattttgttgaagtagagttagaat-ac------- Bushbaby cccatttcc--------ccttccctttacctctctgattttgttgaagcagggtcagaat-at------- Tree shrew cccatttcg--------actt---cttccctctctgatttggtcgaagcaggaccggaat-ac------- Malayan flying lemur tccatttcc--------acttccacttccctctcttattttgttgaagcagagtcagaat-ac------- Pig cccatttcc--------acttcattttccttcccttattttgttaaaacagaatccga-t-ac------- Dolphin cccattttc--------agttcctcttccctcccttattttgttaaaacagaatccca-t-at------- Cow accatttcc--------acgttctcttccctcctttattttgttaaaacagaatcccg-t-at------- Sheep accatttcc--------actttctcttcgctcctttattttgttaaaacagaatgccg-t-ag------- Horse tccatttcc--------acgtcctcttccctcccttattttgttaaaat--agtcaga-t-ac------- Chinese pangolin actatttcc--------acttactcttctttccattattttgttgaaacagagtcaga-t-ac------- Dog cccatttcc--------acttccttttctctccctgattttgctaaaacagaattaga-t-ac------- Hawaiian monk seal accatttcc--------atttccttttctctcccttattttgctaaaacagagtcaga-t-ac------- Hedgehog cccattttcaccaacaaactccct-----tccctttattttgtt--------ttttaa-a-aa------- Shrew ctcatttct--------actttct-----ctcccttactctgttgaga---gtccaga-t-aa------- Elephant gctatttcc--------actccgtcttctctccctcattttattaaaacagaatcacaat-ac------- Tenrec accttctcc--------actc--tcttccctcctgc--ttcgttaagacagcatcacaa----------- Zebrafish ====================================================================== X. tropicalis ====================================================================== Opossum ====================================================================== Chicken ====================================================================== Mouse -a-----------------ttagtagcta---atttc-cttgcaaa--t-----gtcacc-aaaaaac-- Rat -a-----------------ttagtagcta---atttc-ctggcaaa--t-----attacc--aaaaac-- GCF_003668045 -a-----------------ttagtagctagctattcc-ctggcaaa--t-----aacacc--aaaaac-- Beaver ga-----------------ttagtacgt----atcct-gtggcgaa--t-----atcaca--gaaaat-- Squirrel -a------------------tatcagct----atccc-atgataaa--c-----accacacagaaaat-- Guinea pig ga-----------------atagcagcg----atccc-atggcaag--t-----atcata--gcaaat-- Rabbit -a-------gactgtgtacatagtcgct----tcccc-gtggccaa--g-----accgca--ggcaac-- Pika -a-------ga--------gaagtagct----ttccc-ggagccaa--t-----agcaca--gaactc-- Human -a-------ta--------ttagtggct----ctcca-atggcaaa--t-----aacaca--gaaaat-- Chimp -a-------ta--------ttagtggct----ctcca-atggcaaa--t-----a--aca--gaaaat-- Bonobo -a-------ta--------ttagtggct----ctcca-atggcaaa--t-----a--aca--gaaaat-- Gorilla -a-------ta--------ttagtggct----ctcca-atggcaaa--t-----aacaca--gaaaat-- Rhesus -a-------ca--------ttggtggct----ctcca-ataacaaa--t-----aacaca--gaaaat-- Marmoset -a-------tg--------tcagtggct----ctcca-atagcaaa--t-----agcaca--gaaaat-- Tarsier -a-------ta--------tcagtaact----ctctt-gtagcaga--------aataca--gaaaaa-- Bushbaby -g-------ta--------tccgtctct----tgcttcatggcata--g-----accaca--gaaaat-- Tree shrew -g-------ta--------ttagtagct----ctccc-a-ggcaac--t-----attacc--gagaatac Malayan flying lemur -a-------ta--------ttagtagct----gtccc-atggcaca--t-----accaca--aaaaa--- Pig -a-------ta--------ttagtagct----ctcct-atgacaaa--c-----atcaca--gaaaat-- Dolphin -a-------ta--------ttagtagct----ctccc-atgacaaa--t-----atcaca--gaaaat-- Cow -a-------ta--------ttagtagct----ctccc-atgacaaa--t-----atcaca--gaaaat-- Sheep -a-------ta--------ttagtagct----ctccc-atgacaaa--t-----atcaca--gaaaat-- Horse -g-------ta--------ttagtagct----ctccc-atgacaaa--c-----atccca--gaaaac-- Chinese pangolin -a-------ca--------ttagtaaca----gtctc-aaga-aaa--t-----gtcaca--gaaaat-- Dog -c-------ta--------taagtagct----ctccc-gtgacaaattt-----ctccca--agaaat-- Hawaiian monk seal -a-------ta--------ttagtagct----ctccc-atgacaaa--t-----atccca--gaaaat-- Hedgehog -gttttttttt--------tttgtagct----cttgc-ataacaaa--a-----atttca--gaa----- Shrew -g-------gt--------ttaatagct----ctccc-aggaaaaa--a-----gtcaca--gagagt-- Elephant -a-------tt--------ttagtagcc----cttcc-atggcaaa--tttgccatcaca--gaaacc-- Tenrec -----------------------tagct----cttgg-gtagcaag--tttgccttctca--gaaaca-- Zebrafish ====================================================================== X. tropicalis ====================================================================== Opossum ====================================================================== Chicken ====================================================================== Mouse ------agcaaggagagagtga---gccgcttttctaagtc-tggtt------------------ccact Rat ------agcaaggagagagcaa---gccgcttttctaagtc-tggtt------------------ccact GCF_003668045 ------agcaaggaaagag--a---gccgc-tttcttagtc-tggtt------------------ccact Beaver ---------------------a---gtcatttttctta--c-tgttt------------------ctgct Squirrel ------agcaagaggag----a---atcctcttccttagtc-tcttt------------------ctgtt Guinea pig ------agcacataga-----a---gttcctttccttagtc-tgttt------------------ctatt Rabbit ------agcagccagggc---a---gccccttccctcgctc-tgttt------------------ccact Pika ------ggctgccaaggc---a---gccacc-------ccc-tgttt------------------ctgcc Human ------agcaaggaaagag--a---gcccttttccttagtc-tgttt------------------ctact Chimp ------agcaaggaaagag--a---gcccttttccttagtc-tgttt------------------ctact Bonobo ------agcaaggaaagag--a---gcccttttccttagtc-tgttt------------------ctact Gorilla ------agcaaggaaagag--a---gcccttttccttagtc-tgttt------------------ctact Rhesus ---agcagcaaagaaagag--a---gcccttttccttagtc-tgttt------------------ctact Marmoset ---ggcagcaaggaaagag--a---gccctttttcttagtc-tgctt------------------ctact Tarsier --------------aagag--a---gtcattttcattagtg-tgttt------------------ccact Bushbaby ---agcagtaaggaaagag--a---gttcttttccttagtc-gtctt------------------ctact Tree shrew tgaagcagcaaggaaagag--c---gttcctttccctggtc-tatct------------------ctact Malayan flying lemur -atagcaacaggaaaagag--a---atccttttccttagtc-tgttt------------------ctact Pig ---agcaacaagg----aa--a---atccctctccggaatc-ccttt------------------ctaca Dolphin ---agcagcaaggaaggag--g---gtccctttcctgaatc-tcctt------------------ctacc Cow ---agcagcaaggaaggag--g---gtccctttcctgaatc-tctat------------------tt--- Sheep ---agca----------ag--g---aatcctttcctga-----ctat------------------tt--- Horse ---agcagcaa----ggag--a---gtccctttcctgagtc-tgttt------------------ct--- Chinese pangolin ---agcaagga-----aag--a---ggccctttcctgaatt-ggtat------------------ctata Dog ---agcagcaaag--aaaa--agaggtccctttcctgagtt-tgttt------------------ctact Hawaiian monk seal ---agcagcgaag--aaag--a---gtccctttcccgagta-tgttt------------------ctact Hedgehog ---aacagcatggagagtt--t---ctttctttcctgggtc-tgttt------------------ctact Shrew ---aactgcaaggaaagag--a---gccccctttctgagtc-ctactgaaactaatacaagtgagatact Elephant --taacatcaagc--aaag--a---gtccctttcctgagtc-ttttt------------------ctagt Tenrec --tggcagccagc----ag--a---gcccctttctttagtcgtttgc------------------ctagg Zebrafish ====================================================================== X. tropicalis ====================================================================== Opossum ====================================================================== Chicken ====================================================================== Mouse gtaaagaataccc Rat gtaaagaataccc GCF_003668045 gtaaagaatgccc Beaver gtaaaaaatgcca Squirrel gcaaagaatgcca Guinea pig gcataaactgcca Rabbit gtcaagaacgctg Pika gtccagagcgc-- Human gtgaagaatgtca Chimp gtgaagaatgtca Bonobo gtgaagaatgtca Gorilla gtgaagaatgtca Rhesus gtaaagaatgtca Marmoset gtaaagaatgcca Tarsier gtaaagaatacca Bushbaby ggagagaaagcca Tree shrew gcaaagaatgcca Malayan flying lemur gtaaagaatttca Pig gtaaagaatgcca Dolphin gtaaagaatgcca Cow gcaaagcacgcga Sheep gtaaagcatgcga Horse ----agaatgtca Chinese pangolin gtaaagaatgcca Dog gtaaacaatgcca Hawaiian monk seal gtaaagaatgcca Hedgehog gcaaagaatatcc Shrew gaaactaatacaa Elephant gaaaagaatgcca Tenrec gacaaaaatgcca Zebrafish ============= X. tropicalis ============= Opossum ============= Chicken ============= Inserts between block 2 and 3 in window B D Dog 189bp Alignment block 3 of 407 in window, 56747944 - 56748024, 81 bps B D Mouse at-gaggtctctataagcaaactcgcc---attttctttcgc-----a-aagacctgc--ctgtaactct B D Rat gt-taggtatctataagcaaattcacc---attttctttcgc-----a-aagacctgc--ctataactct GCF_003668045 at-gaggtatc-gtaagcaaactcacc---attttcttt-gc-----a-aagacctgc--ctgtaacaat Beaver at-aggatatt-ctaagcaagtttgtc---attttcttttat-----a----acttgtaattgtaattcg B D Squirrel at-gggatatt-ataaggaagtttatc---gttttcttttac-----aaaagggcccc--atttatttca B D Guinea pig at-gagtcac--ataagtaagtttgcc---gttttcttttac-----a-a--aactgc---cataatttg B D Rabbit at-gaggaggt-gtgagaaagtctgcc---atttttccttca--tgaa-agggcccat--ccaagctcgt B D Pika -------------tgagaaggtct-----------------------a-agggggca------------- B D Human at-gagaaatg-ataaggaagtttgtc---attttcttttac---taa-acgacccac--ccttaattcg B D Chimp at-gagaaatg-ataaggaagtttgtc---attttcttttac---taa-acgacccac--ccttaattcg B D Bonobo at-gagaaatg-ataaggaagtttgtc---attttcttttac---taa-acgacccac--ccttaattcg B D Gorilla at-gagaaatg-ataaggaagtttgtc---attttcttttac---taa-acgacccac--ccttaattcg B D Rhesus at-gagaaatg-ataaggaagtttgtc---attttcttttgc---taa-agcacccac--ccttaattcg B D Marmoset at-ggaaaatg-ataaggaagtttgtc---attttcttttac---tat-aggacccac--ccttaacttg B D Tarsier at-aagaaatt-atatgaaagtctgtt---attttcttttac---taa-atggcccac--ccttaattct B D Bushbaby gt-gagacatt-acaagaaagtttgtg---actttctttcac---aat-agggcctgc--ctttatatcg B D Tree shrew gt-gagaaatt-ataaggaagtttgcc---attttcttttacaataaa-agggtgtac--c-------ca B D Malayan flying lemur at-gaaaaatt-atgagaaagtttgtc---attttcttttac---aca-agggcctac--ctgtaactca B D Pig ga-gagaaatt-ataggaaagtttgtc---attatctgctac-aaaaa-aaagcaggt------------ B D Dolphin aa-gagaaatt-gtaagaaagtttgtc---actaccttccac---aga-agagcaggt------------ B D Cow ac-aagaaatt-ataagaaagtttgtc---actaccttctgc---aaa-aaagcaggt------------ B D Sheep aaggagaaatg-ataagaaagtgtgtcattaccaccttctgc---aaa-agagcaggt------------ B D Horse at-gagaaatt-ataagaaagcttgtc---gttttcttcgac---aaa-agggcctgt------------ B D Chinese pangolin at-gagcaatt-ataagaaaggttgtc---attttcttttat---aaa-aagggccct------------ B D Dog ag-gggaaatt-atatgaaagtttgca---attttcttttat---aag-aa-gccccc------------ B D Hawaiian monk seal ag-gagaaatt-atatgaaaacttgcc---attttcttttat---aaa-aa-gccctt------------ B D Hedgehog at-gagaaatt-gtaggaaggttgttc----ttttctttgac----aa-agggcctgc------------ B D Shrew gt-gagaaatt-ttaagaaagcttttc---attttcttttac---aaa-agggcctgc---------ata B D Elephant tt-gagaaatt-ataataatgtatatc---attttctttaac---aaa-agggttggc------------ B D Tenrec at-cagaaatt-ataagaacctatata---attttctttaac---aa----ggccagt------------ B D Zebrafish ====================================================================== B D X. tropicalis ====================================================================== B D Opossum ====================================================================== B D Chicken ====================================================================== Mouse ca---------------------------------------------------gcac---cgtgatt--a Rat cagctc--------ac-------------------t-gagc---ggtggt-gtgcgc---catgatt--a GCF_003668045 ctgctc--------ac-------------------a-gaga---ggcggtggtgcgc---agtggtt--a Beaver caattc--------ac-----------------aga-gaga---ggcagt-acctac---aatggtt--a Squirrel ccattc--------at-------------------c-aaat----------atgtgc---aatggtt--a Guinea pig caa--------------------------------a-gaaa---ggcagt-atgtgc---agtgatt--a Rabbit taactc--------gc-------------------a-gagt----------acaggc---agtggag--a Pika ---------------------------------------------------acaggc---agtg--g--a Human taattt--------gc-------------------a-aagaaaaggcagaatagtac---aatggtt--a Chimp taattt--------gc-------------------a-aagaaaaggcagaatagtac---aatggtt--a Bonobo taattt--------gc-------------------a-aagaaaagacagaatagtac---aatggtt--a Gorilla taattt--------gc-------------------a-aagaaaaggcagaatagtac---aatggtt--a Rhesus taattt--------gc-------------------a-aagaaaaggcagaatagtac---aatggtt--a Marmoset caattt--------acaaaaaaaaaaaaaaaaaaaa-aaaaaaaggcagaatagtac---aatggtt--a Tarsier taattc--------gc-------------------a-aagaaaaaatagtgtagtac---aatggtt--a Bushbaby taattt--------gc-------------------a-aagaaaaggcagtatagcac---aatggtt--a Tree shrew taattt--------ac-------------------a-aagaaga-gcagtata-tac---aatggtt--a Malayan flying lemur taattc--------at-------------------a-aagaagaggcagtataggat---aatggtt--a Pig -aattc--------at-------------------a-aagaagagac----gtgta-------------- Dolphin -aattc--------at-------------------a-aagaagaggcatt-atgtac---aat------- Cow -a------------gt-------------------a-cagaagaggcttt-atgttc---agt------- Sheep -a------------gt-------------------a-cagaagaggcttt-atgttc---aat------- Horse -aattg--------gt-------------------a-aggaacaggcagt-atgtac---aatggtt--a Chinese pangolin -aattt--------gt-------------------a-aagaagaagcatt-atgtacaataatagtt--a Dog -cattc--------at-------------------a-aagaagaggcagt-atgtac---aatgattaca Hawaiian monk seal -cattc--------at-------------------a-aagaagaggcagt-ata-gc---attggtt--a Hedgehog -tgttt--------gt-------------------a-aggaagaggtgat-atgttt---agtggtta-- Shrew taattt--------at-------------------atatatacatatata-agattc---aatggtta-- Elephant -aattctcagggaagt-------------------a-gccg-------------tac---catggtt--a Tenrec -agttct-------gt-------------------a-attgattacaatt-gattac---tgtcatc--t Zebrafish ====================================================================== X. tropicalis ====================================================================== Opossum ====================================================================== Chicken ====================================================================== Mouse gaagctcct Rat aaagctcgg GCF_003668045 gacgcctgg Beaver ggagctcca Squirrel gaagctctg Guinea pig ggagttttg Rabbit ggaccacgg Pika ggaccgtgg Human ggagctccg Chimp ggagctccg Bonobo ggagctccg Gorilla ggagctccg Rhesus ggagctcca Marmoset ggagctctg Tarsier ggaggtacg Bushbaby ggagtt-tg Tree shrew -gaactttg Malayan flying lemur ggagctcca Pig --------- Dolphin --------- Cow --------- Sheep --------- Horse ggagctttc Chinese pangolin ggagcccct Dog ggagctccg Hawaiian monk seal ggaactccg Hedgehog --------- Shrew --------- Elephant tgagctctg Tenrec agagttcct Zebrafish ========= X. tropicalis ========= Opossum ========= Chicken ========= Inserts between block 3 and 4 in window B D Elephant 2bp B D Tenrec 177bp Alignment block 4 of 407 in window, 56748025 - 56748065, 41 bps B D Mouse t-ac------gcaccacag-cttcttaagcaagttg-ttt-acccagt----tag B D Rat taac------ccaccacag-cttcttaagcaagcgg-ttt-acccatt----tag GCF_003668045 c-gct-t-tggtactgctg-cttctgaagcaagctg-tta-gctcatt----tag Beaver a-tc------ttttggctg-ctt-----------ta-tt-------tt----tag B D Squirrel a-tc----tagcaccacca-cttcttaagcaagtta-tttaatttttt----tag B D Guinea pig a-cct-tctggtaccactg-cttcttaagc----ta-ttt-aattctt----tag B D Rabbit t--g----aggcacctccg-cttcttctgcaagttc-gtt-----att----tag B D Pika g-ag----aggtgccccag-cttcggaagcaaggtc-gtt-----att------- B D Human a-tc--tctggctgtacga-cttctt-aggaaaata-ttt-aattttt------- B D Chimp a-tc--tctggctgtacga-cttctt-aggaaaata-ttt-aattttt------- B D Bonobo a-tc--tctggctgtacga-cttctt-aggaaaata-ttt-aattttt------- B D Gorilla a-tc--tctggctgtacga-cttctt-aggaaatta-ttt-aatgttt------- B D Rhesus a-tc--tctggctgtacga-ctcctt-cggaaaata-ttt-aattttt----tag B D Marmoset a-tc--tctggctgtatga-cttctt-agtaaaata-ttt-aattttt----tag B D Tarsier a-tc--tcgggcactatca-cttcttcagcaagtta-ttt-aaagttt----tag B D Bushbaby g-gc--tctggcactaccagcttcttaagcaagtta-att-aatttctttttttg B D Tree shrew a-tct-tctgaaactacca-ttttctaagcaaattatttc-atttttt----aag B D Malayan flying lemur a-tct-tctggcaacactg-cttcttaagca------ttt-aattttg----tag B D Pig --------------cattg-ccacggaagcaagtta-ttt-aaccttt----tag B D Dolphin ---------ggcaccattg-ccacttactcaagtta-tt--aaccttt----tag B D Cow ---------ggcaccactg-ccacttaagcaagtta-ttg-aaccttt----tag B D Sheep ---------ggcaccactg-ccacctaagcaagtta-ttt-aaccttt----tag B D Horse a-tct-tcaggcaccacca-ccgcttaggcaagtta-ttt-aaccttt----tag B D Chinese pangolin a-tct-tctggtaccacca-ccatttaagcaagtta-ttt-aacttcc----tag B D Dog a-tct-tctggcacca--g-tcactaaagcaagtta-ttt-aaccttt----tag B D Hawaiian monk seal a-tct-tctggtaccattg-tcactaaagcaagtta-ttt-aaccttt----tag B D Hedgehog ---------aacaatattg-tcaccatagcatgttg-ttt-ggcttct----tag B D Shrew ---------ggcaccccta-ccac---------tta-ttt-accct-t----tag B D Elephant ----cacctggcgccataggctttttaagcaagtta-ttt-aaccttt----taa B D Tenrec ======================================================= B D Zebrafish ======================================================= B D X. tropicalis ======================================================= B D Opossum ======================================================= B D Chicken ======================================================= Alignment block 5 of 407 in window, 56748066 - 56748148, 83 bps B D Mouse -------------------------------------------------agcctcttcattttcttagac B D Rat -------------------------------------------------agcctcttcattttcttagac GCF_003668045 -------------------------------------------------agcc----------------- Beaver -------------------------------------------------agctcc--------------a B D Squirrel -------------------------------------------------agccctc-------------a B D Guinea pig -------------------------------------------------agccttc-------------a B D Rabbit -------------------------------------------------agcctcc-------------g B D Pika ---------------------------------------------------------------------- B D Human -------------------------------------------------agtctct-------------a B D Chimp -------------------------------------------------agtctct-------------a B D Bonobo -------------------------------------------------agtctct-------------a B D Gorilla -------------------------------------------------agtctct-------------a B D Rhesus -------------------------------------------------agtctct-------------a B D Marmoset -------------------------------------------------agtttct-------------a B D Tarsier -------------------------------------------------aacttca-------------a B D Bushbaby -------------------------------------------------agtttac-------------a B D Tree shrew -------------------------------------------------aaccctt-------------a B D Malayan flying lemur -------------------------------------------------agcctcc-------------a B D Pig -------------------------------------------------agtctct-------------g B D Dolphin -------------------------------------------------agactcc-------------a B D Cow -------------------------------------------------agtctct-------------g B D Sheep -------------------------------------------------agtctct-------------g B D Horse -------------------------------------------------agccttc-------------a B D Chinese pangolin -------------------------------------------------agcctcc-------------a B D Dog -------------------------------------------------cacctcc-------------a B D Hawaiian monk seal -------------------------------------------------cacctcc-------------a B D Hedgehog -------------------------------------------------aacctct-------------g B D Shrew -------------------------------------------------gctctct-------------a B D Elephant -------------------------------------------------agcctca-------------a B D Tenrec ggcctcctctcttttggctccactttaaacaatttgtttaaacttgcaacacctca-------------g B D Zebrafish ====================================================================== B D X. tropicalis ====================================================================== B D Opossum ====================================================================== B D Chicken ====================================================================== Mouse -tttcttca-tt-ttcaaaataa-ggaactaatagtcccaaagtcaa----------------------- Rat -tttcttca-tt-ttcaaaataa-ggaactagtaattccaaagtc-a----------------------- GCF_003668045 ------tca-gt-ttcgagataa-gaaaataatagtcccaaagtc------------------------- Beaver -tttcttca-tc-ttcaaaataa-ggatacaatag-cccaacctcaaaaggtgttaca---aaagattca Squirrel -tttcttta-tc-tttaaaagga-agaaataatagtcccaacgtcaaaagatattatg---agacttcaa Guinea pig -tttcttca-tc-cttaaaaatc-ggaaataatagtcctaacctcaaaaggtgttatg---gggatacag Rabbit -tggcttcc-tg-tttaaaagta-ggaaatcatagtgccaggctccaacgaggtcctg---gggactcag Pika ---gcttca-cg-attaaaa---------------tgctaagttgtagagatgtcccc---aggactcac Human -tttcttca-tc-tttaaaacag-ggaaatgatattcccaaccc--agagatgttatg---agtattcaa Chimp -tttcttca-tc-tttaaaacag-ggaaatgatattcccaaccc--agagatgttatg---agtattcaa Bonobo -tttcttca-tc-tttaaaacag-ggaaatgatattcccaaccc--agagatgttatg---agtattcaa Gorilla -tttcttca-tc-tttaaaacag-agaaatgatattcacaaccc--agagatgttatg---agtattcaa Rhesus -tttcttca-tc-tttaaaacag-ggaaatcatactcccaaccc--agaggtgttatg---agtattcaa Marmoset -tttcttca-tc-tttaaaacag-ggagatgatactcccaaccccaagagatgttatg---ggtattcaa Tarsier -atgcttca-tctttttaaatgg-ggaaatgatagtctcaacctcaagagatgttatg---agtattcaa Bushbaby tttttttca-cc-ttaaaaacag-ggaaatgctagttctaacct-----------------------caa Tree shrew -tttttttgatg-tttaaaatga-aggaataatggtcccactctcaagagagattatg---aggatttaa Malayan flying lemur -tttcttcg-tc-tttgaaatgagaaaaataatagtcccaacctccagagatgttaag---agtattcaa Pig -ttttttcg-tc-tatgaaac---agaaataataggcccaacttcaagagatgtt------gagtttcaa Dolphin -ttttttca-tc-tataaaac---ggaaataatagggtcaacctcaagagatgtg------aaatttcaa Cow -ttttttca-ct-tatgaagcac-ggaaataataggcccaacctcaagcagtgtg-------aatttcaa Sheep -ttttttca-tc-tataaaacag-ggaaataataggcccaacctcaagcagtgtg------aaatttcaa Horse -tttcttca-tc-tgtaaaacgg-aga---aatagtcccaacctcaagagatgttgac---aagagtcaa Chinese pangolin -tttcttca-tc-tgtaaaacag-caaaataataatcctaacctcaagagatgttggttgaaagattcag Dog -tttcttca-tc-tgtaaacccg-ggacacaatagtcctaacctcaggagatgttgtg---aagattcaa Hawaiian monk seal -tttcttca-tc-tttaaaaggg-ggaaataatagtcccaacctcaggagatgttgtg---aagattcag Hedgehog -ttttttca-tt-tgtaaaactg-agaa----tagatccagtctcagaagatgttgtg---aaaattcag Shrew -ttttt----tt-catcaaacaa-ggac-------------tctcaagaga---tagg---aagattcaa Elephant -tttcttca-tc-tataaaaaag-ggaaataagagtttcatcctcaagagatgtcatg---aggattcaa Tenrec -tttgttca-tc-tgtaaaaagg-ggaagggatatttccaacctcaggagctgtcagg--------ccca Zebrafish ====================================================================== X. tropicalis ====================================================================== Opossum ====================================================================== Chicken ====================================================================== Mouse --gagtca-------gtacaactatatg Rat --gagtca-------gtacaatgttaag GCF_003668045 -------a-------gtacatcgatagg Beaver gtgagacg-------atgtaaccatatg Squirrel t-gagatg-------atgcaaccatatg Guinea pig t-gagata-------atgcagtcatatg Rabbit g-aagc-a-------gtgcaaccatatg Pika c-gagtgg-------gtgccaccttatg Human t-gagata-------atgcaaccatatg Chimp t-gagata-------atgcaaccatatg Bonobo t-gagata-------atgcaaccatatg Gorilla t-gagata-------atgcaaccatatg Rhesus t-gagata-------atgcaaccatatg Marmoset t-gagata-------atgcaaccatatg Tarsier t-gagata-------gtgcaacctcata Bushbaby --gagata-------atgtaaccatatg Tree shrew t-gaaata-------atgcaaccatatg Malayan flying lemur t-aagata-------atgcaaccatatg Pig t-gaggta-------atgcaaccatgtg Dolphin t-gagata-------atgcaaccatagg Cow t-gtgata-------atacaaccatggg Sheep t-gtgata-------atacaaccagggg Horse t-gagata-------atgcaaccatatg Chinese pangolin t-gagtta-------gtgcaaccatatg Dog t-gagata-------atgcagccctatg Hawaiian monk seal t-gagata-------atgcagccgtatg Hedgehog c-aagaca-------atgcaactgtagg Shrew t-gagata-------atgcaaacatggg Elephant t-gagata-------gtgcgaccatatg Tenrec t-aagatatgtacacatgcaaccatatg Zebrafish ============================ X. tropicalis ============================ Opossum ============================ Chicken ============================ Inserts between block 5 and 6 in window B D Shrew 4bp B D Elephant 212bp Alignment block 6 of 407 in window, 56748149 - 56748168, 20 bps B D Mouse gctggaaagaaacattcatt B D Rat gctcttaggaaacattcatt GCF_003668045 gcccttaggaaacattcatt Beaver gcacatagtaagcattcatt B D Squirrel gcacatagtaagcactcagt B D Guinea pig agccatagtaaatgttcatt B D Rabbit gcacgccataagccctcttc B D Pika gcactcaggaatccctcatt B D Human gcacatagtaagcatttatt B D Chimp gcacatagtaagcatttatt B D Bonobo gcacatagtaagcatttatt B D Gorilla gcacatagtaagcatttatt B D Rhesus gcacatagtaagcatttatt B D Marmoset gcacatagtaaacagttatt B D Tarsier gcacataataagcattcatt B D Bushbaby gcatatagtaagcattcatt B D Tree shrew gcacatagtaagcattcatt B D Malayan flying lemur gcatagagtaagcattcagt B D Pig gcacacagtaagctttcatt B D Dolphin gcacatagtaggcattcatt B D Cow gcacatagtaagtcttcatt B D Sheep gcaca---taagtcttcatt B D Horse gcacacactgaacattcatt B D Chinese pangolin gcacatagtaagcattcatt B D Dog gctcatagtaagcacgcatt B D Hawaiian monk seal gcacatagtaagcttccatt B D Hedgehog ggacattataag----catt B D Shrew tgaca-cataag----catt B D Tenrec gcacacagcaaatattcagt B D Zebrafish ==================== B D X. tropicalis ==================== B D Opossum ==================== B D Chicken ==================== B D Elephant ==================== Inserts between block 6 and 7 in window B D Rabbit 55bp B D Pika 108bp Alignment block 7 of 407 in window, 56748169 - 56748202, 34 bps B D Mouse aagtaa-----------------------cctc--------cctggttaaaaatggcagcaagag B D Rat aagtat-----------------------cccc--------tgtggttaaaaatggcagtgagag GCF_003668045 aaatat-----------------------cccc--------tgtggttccaaatggcagttagag Beaver aactgt-----------------------tacc--------tgtggttataagtggcagttagag B D Squirrel aaagat-----------------------tacc--------tat-gttctaaatggtacagattg B D Guinea pig aaatgt-----------------------tacc--------tgtggttataaatggtagagactg B D Rabbit attttt-----------------------cacccccctttttgaagttataaatggtgtttagag B D Human aagtat-----------------------tgtc--------tgtggttctaagtggcagttaaaa B D Chimp aagtat-----------------------tgcc--------tgtggttctaagtggcagtttaaa B D Bonobo aagtat-----------------------tccc--------tgtggttctaagtggcagtttaaa B D Gorilla cagtat-----------------------tgcc--------tgtggttctaagtggcagttaaaa B D Rhesus aagtat-----------------------tacc--------tgtggttctaagtggcagttaaag B D Marmoset aagtatttattaagcatttattaagtatatacc--------tgtggttctaagtggcagttaaag B D Tarsier aaatat-----------------------tacc--------ta------taagtggcagttagag B D Bushbaby aaatat-----------------------tacc--------tgtggttaaaactgacagataaca B D Tree shrew aaatat-----------------------tacc--------tgtggttataaatggcggttacag B D Malayan flying lemur aaatat-----------------------tagt--------catatttataaatggctattagag B D Pig aaatat-----------------------tacc--------tgtggatacaaatgagggttagcg B D Dolphin aaatat-----------------------tacc----------ctgatagaaatggcgttagag- B D Cow aaatat-----------------------tgcc--------tatggatagaaatggcacttagag B D Sheep aaatat-----------------------tgcc--------tatggatagaataggcattaaata B D Horse aaatat-----------------------tacc--------tgtgcttacaaatgtcggtcagag B D Chinese pangolin gaattt-----------------------tacc--------tgtggttataaatggcagttagag B D Dog aaatag-----------------------tacc--------tgtggttataaatggcggttggaa B D Hawaiian monk seal taatag-----------------------tacc--------tgtggttataaatggcggttggag B D Hedgehog atctac-----------------------tacc--------tatactgatcaatgttgcttagag B D Shrew aaatat-----------------------tacc--------tgtggttataaatggcagttagag B D Tenrec aaatat-----------------------tacc--------tctggttctgagtggtgattaaag B D Pika ================================================================= B D Zebrafish ================================================================= B D X. tropicalis ================================================================= B D Opossum ================================================================= B D Chicken ================================================================= B D Elephant ================================================================= Inserts between block 7 and 8 in window B D Sheep 68bp Alignment block 8 of 407 in window, 56748203 - 56748220, 18 bps B D Mouse acaggctttt--------taaaaaaa B D Rat a----ctttt--------t------- GCF_003668045 attgactttt--------a------- Beaver a----tattt--------t------- B D Squirrel a----ctttt--------a------- B D Guinea pig a-----tttt--------a------- B D Rabbit attaactttt--------a------- B D Human agacacgtgt--------a------- B D Chimp agacacgtgt--------a------- B D Bonobo agacacgtgt--------a------- B D Gorilla agacacgtgt--------a------- B D Rhesus agagacgtgt--------a------- B D Marmoset agagacttgt--------a------- B D Tarsier gatgactttt--------a------- B D Bushbaby ----accttt--------a------- B D Tree shrew attgccttgt--------a------- B D Malayan flying lemur attgactt-t--------g------- B D Pig attgacttct---------------- B D Dolphin attgactca----------------- B D Cow attgactta----------------- B D Horse attgactttt---------------- B D Chinese pangolin attgactttt---------------- B D Dog atcgactttt---------------- B D Hawaiian monk seal attgactttt---------------- B D Hedgehog accgactttt---------------- B D Shrew attgatttctcaagaaca-------- B D Tenrec -ataacattt---------------- B D Sheep ========================== B D Pika ========================== B D Zebrafish ========================== B D X. tropicalis ========================== B D Opossum ========================== B D Chicken ========================== B D Elephant ========================== Inserts between block 8 and 9 in window B D Hedgehog 7bp B D Shrew 227bp Alignment block 9 of 407 in window, 56748221 - 56748234, 14 bps B D Mouse caaaaaacaaaaaa B D Pig ---------aaaaa B D Dolphin ---------aaaaa B D Horse ---------aaaaa B D Chinese pangolin ---------aaaaa B D Dog ---------aaaaa B D Hawaiian monk seal ---------aaaaa B D Guinea pig -------------- B D Sheep ============== B D Rhesus -------------- B D Marmoset -------------- B D Gorilla -------------- B D Bonobo -------------- B D Chimp -------------- B D Human -------------- B D Tenrec -------------- B D Tarsier -------------- B D Tree shrew -------------- B D Hedgehog ============== B D Pika ============== B D Zebrafish ============== B D X. tropicalis ============== B D Cow -------------- B D Opossum ============== B D Chicken ============== B D Shrew ============== B D Elephant ============== B D Squirrel -------------- B D Rabbit -------------- B D Bushbaby -------------- Beaver -------------- B D Malayan flying lemur -------------- GCF_003668045 -------------- B D Rat -------------- Inserts between block 9 and 10 in window B D Pig 6bp B D Dolphin 19bp B D Horse 9bp B D Chinese pangolin 19bp B D Dog 19bp B D Hawaiian monk seal 19bp Alignment block 10 of 407 in window, 56748235 - 56748261, 27 bps B D Mouse aacccaaacaaacaacaaaaacaaaac B D Cow -----------------------aaat B D Tenrec -------------------------a- B D Guinea pig --------------------------- B D Sheep =========================== B D Rhesus --------------------------- B D Hawaiian monk seal =========================== B D Dog =========================== B D Horse =========================== B D Marmoset --------------------------- B D Gorilla --------------------------- B D Bonobo --------------------------- B D Chimp --------------------------- B D Human --------------------------- B D Tarsier --------------------------- B D Tree shrew --------------------------- B D Hedgehog =========================== B D Pika =========================== B D Zebrafish =========================== B D X. tropicalis =========================== B D Opossum =========================== B D Chicken =========================== B D Shrew =========================== B D Elephant =========================== B D Squirrel --------------------------- B D Pig =========================== B D Rabbit --------------------------- B D Chinese pangolin =========================== B D Dolphin =========================== B D Bushbaby --------------------------- Beaver --------------------------- B D Malayan flying lemur --------------------------- GCF_003668045 --------------------------- B D Rat --------------------------- Inserts between block 10 and 11 in window B D Cow 9bp Alignment block 11 of 407 in window, 56748262 - 56748266, 5 bps B D Mouse aaaac B D Rat ---ac GCF_003668045 aaaac Beaver aaagt B D Squirrel aaaat B D Guinea pig agaat B D Rabbit aaagc B D Human aaagt B D Chimp aaagt B D Bonobo aaagt B D Gorilla aaagt B D Rhesus aaagc B D Marmoset aaagc B D Tarsier aaaac B D Bushbaby aaaac B D Tree shrew aaaac B D Malayan flying lemur aaacc B D Sheep aaaac B D Elephant ataac B D Tenrec aaaac B D Hawaiian monk seal ===== B D Dog ===== B D Horse ===== B D Hedgehog ===== B D Pika ===== B D Zebrafish ===== B D X. tropicalis ===== B D Cow ===== B D Opossum ===== B D Chicken ===== B D Shrew ===== B D Pig ===== B D Chinese pangolin ===== B D Dolphin ===== Alignment block 12 of 407 in window, 56748267 - 56748275, 9 bps B D Mouse aagtgatat B D Rat aagtgatac GCF_003668045 aagtgacat Beaver aagcaatat B D Squirrel cagccatat B D Guinea pig cagcagcat B D Pika aaatgatgt B D Human aagtaatat B D Chimp aagtaatat B D Bonobo aagtaatat B D Gorilla aagtaatat B D Rhesus aagtaatat B D Marmoset aagtaatat B D Tarsier aagcaatat B D Bushbaby aagctatat B D Tree shrew aagcaatat B D Malayan flying lemur aggcaatat B D Cow --------t B D Sheep aagcagttt B D Horse --------t B D Chinese pangolin --tgtgtgt B D Hawaiian monk seal --------t B D Hedgehog aagcttttt B D Elephant aagcaattt B D Tenrec aagtggtta B D Dog ========= B D Zebrafish ========= B D X. tropicalis ========= B D Opossum ========= B D Chicken ========= B D Shrew ========= B D Pig ========= B D Rabbit --------- B D Dolphin ========= Inserts between block 12 and 13 in window B D Cow 9bp B D Sheep 9bp B D Horse 3bp B D Chinese pangolin 3bp B D Hawaiian monk seal 3bp B D Hedgehog 21bp Alignment block 13 of 407 in window, 56748276 - 56748308, 33 bps B D Mouse tc------------------ataatatacattgtttagaa---aatccgtagta B D Rat ac------------------ataatattcatggtttagaa---aatctatagta GCF_003668045 tc------------------ataataggcattgtttagaa---aatctatagta Beaver tta---------------tgataatatgctttgtttagag---agcccatagta B D Squirrel tta---------------aaataatacacgttgtttagag---agcccatagca B D Guinea pig tta---------------aaagaatgtactttgtttagag---aggccatagta B D Rabbit -------------------------aagcactgtttatcg-------------- B D Pika ttagagattgact--tttaaaaagcaatcactgtttatcagacgtctcatagta B D Human tta---------------tcagagtatactttgttctgag---agaccatagtc B D Chimp tta---------------tcagagtatactttgttctgag---agaccatagtc B D Bonobo tta---------------tcagagtatactttgttctgag---agaccatagtc B D Gorilla tta---------------tcagagtatacttcgttctgag---agaccatagtc B D Rhesus tta---------------tcagagtatactttgttctgag---agaccatagtc B D Marmoset tta---------------tcagagtatatcttgttcagag---agcccatagtc B D Tarsier tta---------------ggagaatatactttgttccaag---agcccatagta B D Bushbaby tta---------------tcagaatatactttgttcagag---aggccgtactc B D Tree shrew ata---------------ccagaatatagtttgtc-agaa---agtccatggtc B D Malayan flying lemur tta---------------tcagaatatactttgttgggag---agcccatagtt B D Pig ---------------------------actttgttcagag---agcccatagtc B D Dolphin ------------------tcagaatatactttggtcagcc---agctcatagtc B D Cow ------------------tcacaatttactttgatcaggg---aatacatagtc B D Sheep ------------------tcacaatatactttgatcaggg---agttcat---- B D Horse ------------------taagagaatactttgttcagag---agctcattgtc B D Chinese pangolin ------------------tgaggatatactttatttaggg---agctcatagtc B D Dog ------------------tgagaatatactttgttcagag---agctcatagtc B D Hawaiian monk seal ------------------tgagaatagactttattcagag---agctcatagcc B D Hedgehog ------------------tgagtgtatgctttgctctgag---aactc--tgtc B D Elephant -------ttatcc--------gagtattctttgcccagag---agcttatagtc B D Tenrec -------cctcccccactccataatattccttgcttagag---agcttatagtc B D Zebrafish ====================================================== B D X. tropicalis ====================================================== B D Opossum ====================================================== B D Chicken ====================================================== B D Shrew ====================================================== Inserts between block 13 and 14 in window B D Pig 10bp B D Dolphin 10bp B D Cow 10bp B D Sheep 10bp B D Horse 10bp B D Chinese pangolin 10bp B D Dog 10bp B D Hawaiian monk seal 10bp B D Hedgehog 10bp Alignment block 14 of 407 in window, 56748309 - 56748448, 140 bps B D Mouse agaa--------------a---------------------cactt-gtg----acagacaa--taaaa-- B D Rat agaa--------------a---catcctacca------agcatct-atg----acaaacaa--tggaa-- GCF_003668045 agaa--------------a---cattcctcca------agcattt-gtg----acaaacaa--tagga-- Beaver aaaa--------------a----aagtggcga------ggcatttcgtt----acaaacaa--tagaa-- B D Squirrel aaag--------------aaaaaaaaagtcaa------agcattttgct----acaaacac--taaaaag B D Guinea pig aaaa--------------t-----aaagtcaa------gccattttggt----acaagcaa--tagaa-- B D Rabbit -----------------------------gaa------tatactttgtt-----cagacagcctagag-- B D Pika aaaa--------------aaaaaaggtgtgaa------ggcatgttgttacccacaga-----tagag-- B D Human aaaa--------------a------gcttcaa------gagattttgtt----acaaacaa--tagaaag B D Chimp aaaa--------------a------gcttcaa------gggattttgtt----acaaacaa--tagaaag B D Bonobo aaaa--------------a------gcttcaa------gggattttgtt----acaaacaa--tagaaag B D Gorilla aaaa--------------a------gcttcaa------gggattttgtt----acaaacaa--tagaaag B D Rhesus aaaa----------------------cttcaa------gggattttgtt----acaaac-a--tagaaag B D Marmoset aaaa--------------a------gcttcaa------gggattttgtt----acgaacaa--tagaaag B D Tarsier aaaaacaaaacaaaacaaa------acttcaa------ggcattttgtt----acaaacaa--tagaaag B D Bushbaby aaaa--------------a------gctttga------ggcattttgtt----gcaaacaa--tagaaag B D Tree shrew aaaa--------------a------gtgtcaa------ggtattttgct----acaaacaa--tagaagg B D Malayan flying lemur gaaa--------------a------cagtcaa------ggtgttttgtt----acagacaa--tggaaag B D Pig ------------------------------aa------ggtattttgtt----acaaacca--tag---- B D Dolphin ------------------------------aa------ggtattttgtt----acaaacaa--aag---- B D Cow ------------------------------aa------ggtattttgtt----acaaacaa--tag---- B D Sheep ------------------------------aa------ggtattttgtt----acaaacaa--tag---- B D Horse ------------------------------aa------ggcatttcgtt----acaaacaa--tagaaag B D Chinese pangolin ------------------------------aa------ggcattttgtt----acaaacaa--tagaggg B D Dog ------------------------------aa------ggcattttgtt----acaaacaa--tag-agg B D Hawaiian monk seal ------------------------------aa------ggcattttgtt----acaaacgt--tagaagg B D Hedgehog ------------------------------at------agcattttgtc----ggaaacag--tgtg--- B D Shrew ------------------------------accttaaaagcaaaaaaaa----aaaaaaaa--agta--- B D Elephant --------------------aacaagtgtcaa------ggcattttgtt----ccaaacaa--tag---- B D Tenrec --------------------aaaacatttcaa------ggcatttagtt----acaaacaa--tag---- B D Zebrafish ====================================================================== B D X. tropicalis ====================================================================== B D Opossum ====================================================================== B D Chicken ====================================================================== Mouse agtgtacacaaagcctggag-----aacagtagcag----------------gca------ttt-aacag Rat aatgtacagaaagcctggag-----aacagtagcag----------------gta------ttt-aacag GCF_003668045 agtgtacacaaagcatcaag-----aacagtaggga----------------gcatttaacttt-aacag Beaver --cgtatataaagcgctgag-----catagtaacaa----------------gca------ttt-aatag Squirrel agtgcatacaaaacactgaa-----catagtagcaa----------------gca------tttaaaaag Guinea pig aatgtatataaagcactgag-----cttagaaacaa----------------gca------tca-agtat Rabbit tcca---------aacgtag-----catagtagcaa----------------gca------ttt-aatag Pika gctgtgcacatgcagtgtag-----cctagtagcaa----------------acg------ttt-aatag Human agtgtatataaagcacctac-----catagaagcaa----------------gca------ttt-aatag Chimp agtgtatataaagcacctac-----catagaagcaa----------------gca------ttt-aatag Bonobo agtgtatataaagcacctac-----catagaagcaa----------------gca------ttt-aatag Gorilla agtgtatataaagcacctac-----catagaagcaa----------------gca------ttt-aatag Rhesus agtgtatacaaggcacctac-----cagagaagcaa----------------gca------ttt-aatag Marmoset agtgtatataaagcgtctac-----catagaagcaa----------------gca------ttt-aatag Tarsier agtgtatataaagtgcctaa-----cataatagcaa----------------gca------ttt-aatag Bushbaby agtatatataaagctcctac-----cagagcagcaa----------------aca------ttt-attag Tree shrew agtggatataaaacaaccac-----tgtagtagcaa----------------gca------ttt-aatag Malayan flying lemur agt------------------------------------------------------------------- Pig agtgtctataaagcacctagtata-cagagtagcaa----------------gca------ttt-aatag Dolphin agcatctataaagcacctagtata-cagagtagtaa----------------gca------ttt-aattg Cow agtgtctataaagcacctagcata-tagagtagtaa----------------gca------ttt-actag Sheep cgtgtctataaagcacccagcata-tagagtagtaa----------------gca------ttt-aatag Horse agtgtatataaagtgcctagtatt-catagtagcta----------------gca------ttt--atag Chinese pangolin agtgtatacaaagcacctag-----catagtagcaa----------------gaa------ttc-aatag Dog agtgtttttaaagcactgag-----cagagtagcaa----------------gca------ttt-aatag Hawaiian monk seal agtgtttttaaagcacctag-----catagtagcaa----------------gca------ttt-aatag Hedgehog agtgcatgcaaagcgcctacctgg-cctagtagcaa----------------gca------ttt-aatag Shrew -------gcaaggtattttgatggaaataataggaatgactataaaacaccttta------ttt-aacag Elephant agtctatctaaagcatttag-----caaagcagcaa----------------gcg------ttt-aatag Tenrec tagctatctaaagcatttag-----tatagtagcaa----------------aca------ttt-aatag Zebrafish ====================================================================== X. tropicalis ====================================================================== Opossum ====================================================================== Chicken ====================================================================== Mouse gggctcag-tgctgtc-------------------tgga--------gtcacatcatgaagttcagagtt Rat gagctctg-cgctgtct------------------tgga--------atcacatcatgaagttctgagtt GCF_003668045 gggctcag-tgccttctgtt-gctcattg-ttttgggga--------atcacactgtgaagactggagtt Beaver gtgctcag-tgcttattattaggtcatca-tttcttgga--------ataacattgcgaagtatacagct Squirrel gtatttag-tgctttttattagctcacca-tttcttgga--------ataacattgtgaagtatggtttt Guinea pig gtgctcag-agcttttcattag---atca-tttcttgga--------ataacattgtgaagcatagagct Rabbit gtgcccag-tgcttttgattaggtcatca-tttcttgga--------ataacattgtgaagtatagagtt Pika gtgcccag-cacttttgattaggtcatgg-tttcttgga--------ataacattgtgaagtacagagtt Human gcgctcag-tgctttttattaggtcatca-ttgattgga--------ataacattgtgaagtatagagtt Chimp gcgctcag-tgctttttattaggtcatca-ttgattgga--------ataacattgtgaagtatagagtt Bonobo gcgctcag-tgctttttattaggtcatca-ttgattgga--------ataacattgtgaagtatagagtt Gorilla gtgctcag-tgctttttattaggtcatca-tttattgga--------ataacattgtgaagtatagagtt Rhesus gcgcttag-tgctttttattaggtcatca-tttattgga--------ctaacgttgtgaagtatagagtt Marmoset gcactcag-tgctttttattaggtcatca-tttattgaa--------ataacgttgtgatgtatagagtt Tarsier gtgctcag-tgctttttattaggtcatca-tttcttgga--------ataatattgtgaagcatagaatt Bushbaby gtgcttat-tgctccttattagatcatca-ttcctagaa--------ataacat------gtgaagagct Tree shrew atgctcag-tgctttcgatgagatcatca-ttgcttggaagaacatcataacatcatgaagcacagagtt Malayan flying lemur -----------------------------------------------atagtgtc--------------- Pig gtgatggg-ttatgtttactagatcataa-tttcctgga--------ataacattgtaaagtatgaagtt Dolphin gtgctcag-taatgtttattaggtcttca-tttcctgga--------ataacattgtgaagtacagagtt Cow gtgctcag-taatgtttattaggtcatca-tttcctgaa--------ataacattgtgaagtacagagct Sheep gtgctcag-taatgtttattaggtcatca-tttcctgaa--------ataacattgtgaagtatagagct Horse gtgctcag-taggttttattgggtcatca-tttcctgga--------ataacatcgtgaagtatagagtt Chinese pangolin gtgctcag-tagtttttattaagtcatca-tttcttgga--------ataccatcatgaagtatagagtt Dog gtgctcag-gagtttttattaggtcatca-tttgttgga--------ataacatcaggaagtatagagtc Hawaiian monk seal gtgctcag-tagtttttattgggtcatca-tttgttata--------ataacatcaggaagtaaagagtt Hedgehog gtagtcag-ttatttgtatgaggttatcatttttttgga--------atgacaccatgaaatacagaatt Shrew gtattcag-taatttttatgaggtcatta-ttttctgga--------atatcttcatggagtatagagta Elephant gtgtgcag-taatttttattaggtcatca-tttcttaga--------ataacattgtgaagtacagagtt Tenrec acatgcagttaatttttatgaggccatca-tttcttaga--------ataacactgtgcagtatcaggct Zebrafish ====================================================================== X. tropicalis ====================================================================== Opossum ====================================================================== Chicken ====================================================================== Mouse c----aaaa-t-cag---cttctgttcccacaagcagtc Rat c----aaaa-t-cag---ccccagttcccacaatccgtc GCF_003668045 c----agaa-a-aag---ctccaattcccacaggcagtc Beaver g----aaaa-a-tag--tctctaattcccacatgtagtt Squirrel a----aaag-t-------ttctaattcttctgggtagtt Guinea pig g----aaag-a-taa--tctctatttcccatgcaccgtt Rabbit g----aaaa-a-tag--tctctaattcccacatgtagtt Pika g----aaaa-g-tag--cctctaattc------------ Human g----aaaa----ag--tttctaattcccacatgtcatt Chimp g----aaaa----ag--tttctaattcccacatgtcatt Bonobo g----aaaa----ag--tttctaattcccacatgtcatt Gorilla g----aaaa----ag--tttctagttcccacatgtcatt Rhesus g----aaaa----ag--tttctaattcccacatgtcatt Marmoset g----aaaa----ac--tttctaact-ccacatgtcatt Tarsier gaaaaaaaa----ag--tatctaacttccacatggggtt Bushbaby g----aaaa-a-tag--tctctaatccccacactgggct Tree shrew a----aaaaaa-taa--tctc-aattcccacatatagtt Malayan flying lemur -----gaaaaa-tag--tctctaattcccacatgtagtt Pig g----aaaa-a-aag--cctttaatttccacatacagtt Dolphin g----aaaa-t-aaaggtctctaattcccacatgtagtt Cow g----aaaa-a-aaaaa-----gtctcccacatagagtt Sheep g----aaaa-a-aaa--------tctcccccatagagtt Horse g----agaa-a-tag--tctgtaattcccagatattgtt Chinese pangolin g----aaaa-a-tag--tttctaattcccacatacaggt Dog g----aaaa-a-tag--ttttaaattcttacatatagtt Hawaiian monk seal g----aaaa-a-tag--tttttaattctcacatgtagtt Hedgehog g----aaaa-agcag--cctcttttt--cacagatagct Shrew g----aaaa-a-cag--tttgtaatt--ctcgtgtattt Elephant g----aaaa-a-gag--tct-gaattcccacatggagat Tenrec g----ag--------------gattttctacatgtagtt Zebrafish ======================================= X. tropicalis ======================================= Opossum ======================================= Chicken ======================================= Inserts between block 14 and 15 in window B D Human 355bp B D Chimp 84bp B D Bonobo 338bp B D Gorilla 350bp B D Rhesus 82bp B D Marmoset 278bp B D Bushbaby 4bp Alignment block 15 of 407 in window, 56748449 - 56748491, 43 bps B D Mouse agtacattccgtttttt------aca---taaaaagcagctgccccat--ct---aa--- B D Rat aatccatcccg---ttt------gca---taaaaagcagcttcctcat--cg---aa--- GCF_003668045 aatgaa-ccag---cttaaaaaaaaa---aaaaaagcggtttcctcat--cc---aa--- Beaver gatgaacccag---ttt------gta---taagacac----------------------- B D Squirrel gatgaacccag---ctt------atg---tataaaccagccttataat--cc---aa--- B D Guinea pig aatgaaaccag---ttt------ata---catgatgtagtcttata----ca---aa--- B D Rabbit gatgaactcaa---ctt------atg---tgtaaagcagactcataat--gc---aa--- B D Pika ----aactcca---ctt------ata---tgtaaagcaaactcataat--gc---aa--- B D Chimp gtctagctctg---tcg------ccaggttggagtgcagtggcgcgat--ct---ct--- B D Rhesus gtctagctctg---tcc------ccaggctggagtgcagtggcacgat--ct---ca--- B D Tarsier gatgaatccag---ttt------aca---tataaaacagcctcataat--cc---aa--- B D Bushbaby ----agtccaa---t---------------------cagtctcataat--cc---aa--- B D Tree shrew gatgaacac-------t------ata---tataaagctgtctcattat--ccaaaaa--- B D Malayan flying lemur gatgaacccag---ttt------ata---tataaaacagtctcataat--cc---aa--- B D Pig gatgaacatgg---ttt------ata---tataaagcagtattataat--cc---aa--- B D Dolphin gatgaacccag---ttt------ata---tataaagcagcatcataat--cc---aa--- B D Cow gatgaacctag---tta------ata---aataaagcagtattataat--cc---aa--- B D Sheep gatgaacctag---ttt------ata---aataaagcagtgtcataat--cc---aa--- B D Horse gatgaacccag---ttt------aaa---aacaaagcaatgtcataatccca---aa--- B D Chinese pangolin gatgaacccag---ttt------ata---tataaagcagcatcataat---a---aa--- B D Dog gatacacccgg---ttt------att---tatgaagcagtgtcataat--tc---aa--- B D Hawaiian monk seal gataaacccag---ttt------ata---tataaagcagtgtcataat--tc---aa--- B D Hedgehog cataaacccag---ttc------ata---tgtagaacactgtcttaat--cc---aa--- B D Shrew cacgatcctac---tt--------ta---tataaaacagtgtcaaaat--ga---aa--- B D Elephant gatgaatccag---cct------gta------acagctgtctcactgg--cc---caaaa B D Tenrec gatgaagccag---ttt------gcc------atagcagtctcacatg--cc---ccaaa B D Marmoset ============================================================ B D Gorilla ============================================================ B D Bonobo ============================================================ B D Human ============================================================ B D Zebrafish ============================================================ B D X. tropicalis ============================================================ B D Opossum ============================================================ B D Chicken ============================================================ Inserts between block 15 and 16 in window B D Rabbit 3bp B D Pika 15bp B D Chimp 211bp B D Rhesus 47bp B D Tarsier 2bp B D Bushbaby 4bp B D Tree shrew 1bp B D Malayan flying lemur 1bp B D Pig 1bp B D Dolphin 1bp B D Cow 1bp B D Sheep 1bp B D Horse 1bp B D Chinese pangolin 1bp B D Dog 1bp B D Hawaiian monk seal 1bp B D Hedgehog 1bp B D Shrew 1bp Alignment block 16 of 407 in window, 56748492 - 56748499, 8 bps B D Mouse a--ac---------ctcca B D Rat a--ac---------cttcc GCF_003668045 a--aaccttcatagcttca Beaver ---ac---------cttta B D Squirrel a--ac---------attta B D Guinea pig a--cc---------tttta B D Rabbit a--gc---------ctttg B D Pika a--ac---------cttcg B D Chimp a--gc---------caccg B D Bonobo a--gc---------cacca B D Rhesus a--gc---------ctccg B D Marmoset a--gc---------ctcct B D Tarsier a--ac---------tttta B D Bushbaby a--ac---------cttta B D Tree shrew a--ac---------cttta B D Malayan flying lemur a--ac---------cttca B D Pig a--at---------cttta B D Dolphin a--at---------cttta B D Cow a--at---------cttta B D Sheep a--at---------cttta B D Horse t--ct---------ctat- B D Chinese pangolin a--at---------cttt- B D Dog a--at---------cttt- B D Hawaiian monk seal a--at---------cctt- B D Hedgehog attgt---------tgtga B D Shrew a--aa---------tctaa B D Elephant --tgt---------tttta B D Tenrec --tgc---------cttct B D Gorilla =================== B D Human =================== B D Zebrafish =================== B D X. tropicalis =================== B D Opossum =================== B D Chicken =================== Inserts between block 16 and 17 in window B D Chimp 8bp B D Bonobo 8bp B D Rhesus 172bp B D Marmoset 40bp Alignment block 17 of 407 in window, 56748500 - 56748500, 1 bps B D Mouse -t B D Rat -t GCF_003668045 -t Beaver -t B D Squirrel -t B D Guinea pig -t B D Rabbit -t B D Pika -t B D Tarsier -t B D Bushbaby -t B D Tree shrew -t B D Malayan flying lemur -c B D Pig -t B D Dolphin -t B D Cow -g B D Sheep -g B D Hedgehog -t B D Shrew -t B D Elephant c- B D Tenrec g- B D Rhesus == B D Hawaiian monk seal -- B D Dog -- B D Horse -- B D Marmoset == B D Gorilla == B D Bonobo == B D Chimp == B D Human == B D Zebrafish == B D X. tropicalis == B D Opossum == B D Chicken == B D Chinese pangolin -- Alignment block 18 of 407 in window, 56748501 - 56748603, 103 bps B D Mouse agctactttca--ttttc--ctctct---gaatgatgtacc-tgtcagtgaggcttgttt---------- B D Rat agctactttca--cttcc--ctctct---------tgaatc-tctcagtgaagcttgttt---------- GCF_003668045 agctactttca--ttttc--tcctcccttgaatgatgtatc-tgtcagtgaaacttgttt---------- Beaver agttattttca--ttttta-ctctct-tgaattaatgtatc-tggcattgaagcttgttt---------- B D Squirrel agttattttca--ttttta-ctcttt--tgacttacatatg-ttgtaaatcattttattcttttgattta B D Guinea pig agttattttca--ttttt--actgtt---gacttatatgtc-tagtcttaagacttgtag---------- B D Rabbit agttattgtcactttttta-ctccct--tgaattatagaac-tggcgtttaaacttggtt---------- B D Pika ag-----------ttttct-ctccct--taagttataatac-cagcatttacgcttgttt---------- B D Human agtaattttta--ttttct-cttcct--tgaattatagatc-taacattgaaatttgttt---------- B D Chimp agtaattttta--ttttct-cttcct--tgaattatagatc-taacattgaaatttgttt---------- B D Bonobo agtaattttta--ttttct-cttcct--tgaattatagatc-taacattgaaatttgttt---------- B D Gorilla agttattttta--tttgct-cttcct--tgaattatagatc-taacattgaaatttgttt---------- B D Rhesus agttattttta--ttttca-cttcct--tgaattatagatc-tagcattgaaacttgttt---------- B D Marmoset agttatgttaa--ttttca-cttcct--tgaattatagatc-tagcatttaaacttgttt---------- B D Tarsier agctatttata--ttttta-ttccct--tgaattatacatc-tagcatttaaacttgttt---------- B D Bushbaby aattattttta--t-------tccct--tgaattagagatc-catcatttaaacttgttt---------- B D Tree shrew agttactttta--ttttta-cttcct--tgaatcacagatc-tagcatttaaattcactt---------- B D Malayan flying lemur agttattttta--ttttta-ctacct--tgacttatacatc-tagaatttaaacttgttt---------- B D Pig gattactttta--ttttta-ctccct--tgaattacagacc-tcgtatttaatcttgttt---------- B D Dolphin gattactttta--ttttta-ctcctt--tgaattatagacc-tagtg-----tattgttt---------- B D Cow ggttactttta--ttttta-ctctcc--tgaattatagacc-tagtgtttaatcttgttt---------- B D Sheep ggttactttta--ttttta-ctccct--tgaattatagacc-tagtgtttaatcttgttt---------- B D Horse gattattttta--ttttta-ctctct--tgaattatagact-tagcatttaagcttgttt---------- B D Chinese pangolin gattattttaa--ttttta-ct-tct--tgaattataggtc-tagcatttgaacttgttt---------- B D Dog gattatttca---tttttt-ctctct--tcaattatagatc-tagtgtttatactcattt---------- B D Hawaiian monk seal ggttatttcgt--tttttt-ctccct--cgaattatagatc-tagtgtttatactcattt---------- B D Hedgehog tattattatta--ttttttactcagt--tgaatac-agacc-tagagttgaaactggttt---------- B D Shrew gattaatttta--tatttc-ctccct--tgaatta-agatcatatacataaaatt-gttt---------- B D Elephant acttattttca--ttttaa-ctgctt--tgaattattgacc-tagattttaaacttgttc---------- B D Tenrec a-ttattttca--ttttta-gttctt--tgaattacagacc-tagattttcaacttcctt---------- B D Zebrafish ====================================================================== B D X. tropicalis ====================================================================== B D Opossum ====================================================================== B D Chicken ====================================================================== Mouse ------ataaagggctaatt--tata-atatgctt--caaaattaaactta-caacttattta------- Rat ------agaaagggctaatt--taaa-atatgctt--cagaactaaacttg-caacttattt-------- GCF_003668045 ------agaaatggctaatt--tatc-atatgctt--taaaactaaactga-cagtttattt-------- Beaver ------agaagtagttaatt--tcta-atacactt--ca-aactaaac---------tattt-------- Squirrel cattgaagaaatggttaatt--tatg-atacattt--caaaaccaaactgt-caattaattt-------- Guinea pig ------agatattgttaatt--tatt-atgtactt--caaaattaatctgg-caatttatct-------- Rabbit ------agcaatgatgaatt--tata-atacactt--caaaactaaactga-caagttactt-------- Pika ------cgggatgatgaatttgtata-atacactt--caaagccaaactga-caagttactc-------- Human ------ggaaatgcttaatt--tata-atacactt--caaaactaaactga-caaattattt-------- Chimp ------ggaaatgcttaatt--tata-atacactt--caaaactaaactga-caaattattt-------- Bonobo ------ggaaatgcttaatt--tata-atacactt--caaaactaaactga-caaattattt-------- Gorilla ------ggaaatgcttaatt--tata-atacactt--caaaactaaactga-caaattattt-------- Rhesus ------ggaaatgcttaatt--tata-atacactt--caaaactaaactga-caaattattt-------- Marmoset ------gggaatgcttaatt--tata-atacactt--caaaactaaactga-caaattattt-------- Tarsier ------aga-------aatt--tgta-atacactt--ctaaactaaaatga-cagattattt-------- Bushbaby ------agaa-------------ata-atacactt--caaaacaaaacaca-caaatcattt-------- Tree shrew ------ggagacggttcatt--tata-atacactt--caaccctaaaggga-caaattatgt-------- Malayan flying lemur ------agaaatggttaatt--t-ta-acacactt--taaaactaaactga-caatttattt-------- Pig ------agaaatggttaatt--tatatatgtattt--caaaatgaaactagtcaattta----------- Dolphin ------agaaatggttagtt--aatacatacactt--caaaatgaaactaatcaattta----------- Cow ------agaaatggttagtt--aatacacacactt--caaaatgaaaccaatcaattta----------- Sheep ------agaaatggttagtt--aatacacacactt--caaaatgaaaccagtcaattta----------- Horse ------agaaatggttaatt--tatatatacacct--caaacctaaactgatcaattta----------- Chinese pangolin ------agaagtacttaatt--tataccaacactt--caaaacaaaaccgataaattta----------- Dog ------agaaatggttaatt--catacac----ct--caaaaccacactgaccaattta----------- Hawaiian monk seal ------agaaatggttaatt--tatacacacatat--caaaaccacacagacaggttta----------- Hedgehog ------agcaagagttaatt--tatactggcactt--caacattcacctgaataatttc----------- Shrew ------agaaatggttca-t--tatatgtgcacttagctaagttcac-----tgattta----------- Elephant ------agaaatgg-----t--tatgcattcactt--caaacctaaattga-tgaaatattt-------a Tenrec ------agaaatgg-----t--tacacaatcaatt--caagcctaaaccga-taaagtattt-taaatga Zebrafish ====================================================================== X. tropicalis ====================================================================== Opossum ====================================================================== Chicken ====================================================================== Inserts between block 18 and 19 in window B D Rabbit 1bp B D Pika 33bp B D Human 1bp B D Chimp 1bp B D Bonobo 1bp B D Gorilla 1bp B D Rhesus 1bp B D Marmoset 1bp B D Tarsier 1bp B D Bushbaby 1bp B D Tree shrew 1bp B D Malayan flying lemur 1bp Alignment block 19 of 407 in window, 56748604 - 56748616, 13 bps B D Mouse aaaataaa------------------tagca-- B D Rat aaaataaa------------------tagca-- GCF_003668045 aaaataaa------------------tagca-- Beaver aaaataga-------------aaattaaaca-- B D Squirrel aaaatgaga------------aaattaaata-- B D Guinea pig aagacaag--------------ttttaaacc-- B D Rabbit --------atttgttttactaattttaaatt-- B D Human -aaataaa------------------aaatt-- B D Chimp -aaataaa------------------aaatt-- B D Bonobo -aaataaa------------------aaatt-- B D Gorilla -aaataaa------------------aaatt-- B D Rhesus -aaataaa------------------aaatt-- B D Marmoset -aaataaa------------------aattt-- B D Tarsier -aaataaa------------------atttt-- B D Bushbaby -aaagaaa------------------aaatt-- B D Tree shrew -aaatcaa------------------aattt-- B D Malayan flying lemur -aaagaaa------------------aa-gt-- B D Pig -aaataaa------------------aatag-- B D Dolphin -aaataaa------------------aatag-- B D Cow -aaataaa------------------aatag-- B D Sheep -aaataaa------------------aatag-- B D Horse -aaataaa------------------aatag-- B D Chinese pangolin -aaataaa------------------aatag-- B D Dog -aaataaa------------------aatag-- B D Hawaiian monk seal -aaataaa------------------aatag-- B D Hedgehog -caataaa------------------aatat-- B D Shrew -aaattaa------------------aatag-- B D Elephant aaattcaa------------------aacatta B D Tenrec aaatttaa------------------aacatga B D Pika ================================= B D Zebrafish ================================= B D X. tropicalis ================================= B D Opossum ================================= B D Chicken ================================= Inserts between block 19 and 20 in window B D Rabbit 1bp B D Human 5bp B D Chimp 5bp B D Bonobo 5bp B D Gorilla 5bp B D Rhesus 5bp B D Marmoset 5bp B D Tarsier 9bp B D Bushbaby 9bp B D Tree shrew 9bp B D Malayan flying lemur 9bp B D Pig 7bp B D Dolphin 7bp B D Cow 5bp B D Sheep 5bp B D Horse 6bp B D Chinese pangolin 6bp B D Dog 7bp B D Hawaiian monk seal 7bp B D Hedgehog 1bp B D Shrew 3bp Alignment block 20 of 407 in window, 56748617 - 56748698, 82 bps B D Mouse t---ttcaagtaa---atgc-------tgttt--------c-----act-aaaaat-cattca------- B D Rat t---ttcaagtga---atgc-------cattt--------c-----act-aaaaat-cactca------- GCF_003668045 ----ttcgagtaat--ttgc-------tgttt--------c-----cttaaaaaat-cattta------- Beaver tggcttcagat-----actc-------tattc----tgaac-----att-gaaaat-tgatta-atttta B D Squirrel tgatttcaaataatccactc-------tatgtattctgaac-----act--aaaat-agattacctttta B D Guinea pig tagtttcaaatct---attc-------tatgt--tacgaac-----att-aaaatt-tgactagattata B D Rabbit ---tttcaaacgatatactc-------tatat--tctgaat-----gtt-aaaa-t-tgattacatttta B D Pika ---tttcaagtaatgaactg-------tgtat--tctaaat-----gtt-aaaatt-tgattacatttta B D Human ---ttttaaat-----aatt-------gatat--tctgatt-----att-aaaaat-agattacatttta B D Chimp ---ttttaaat-----aatt-------gatat--tctgatt-----att-aaaaat-agattacatttta B D Bonobo ---ttttaaat-----aatt-------gatat--tctgatt-----att-aaaaat-agattacatttta B D Gorilla ---ttttaaat-----aatt-------gatat--tctgatt-----att-aaaaat-agattacatttta B D Rhesus ---tttcaagt-----aatt-------gatat--tctgatt-----agt-aaaaat-agattatctttta B D Marmoset ---ttttaaac-----aatt-------gatat--tttgat--------t-aaaaat-agat---gtttta B D Tarsier ---tttaaaat-----aatc-------tattt--tctgatc-----att--atatt-gggtaacatttta B D Bushbaby ---tttcaaac-----aatctactctgtatat--cctgatc-----att-aaaaat-ggtttacatttta B D Tree shrew ---ttttgaat------------------tat--cttgcag-----att-taaaat-tgattacatttta B D Malayan flying lemur ---ttttaaat-----actctgctctgtgtat--tcaaaac-----att-aaaaat-tggttacatttta B D Pig ---tgtcaagt-----aatctgctctctatat--tctgaatattttatt-aaaaataacatgacatttta B D Dolphin ---tgtcaagt-----aatctatcctgcatat--tctgaac-----att-aaaaat-ccattacatttta B D Cow ---tgttaagt-----aatctattttgtattt--tctgaac------tt-aaaaat-ccattacatttta B D Sheep ---tgttaagt-----aatctactttgtattt--tctgaac-----att-aaaaat-ccattacatttta B D Horse ----ttcaaat-----aatctactctgtatat--tctgaag-----att-aaaaat-ctattacatttta B D Chinese pangolin ----ttcaaat-----aatttactctatatat--tctgaac-----att-aaaaat-ata-tacacttta B D Dog ---attcaaat-----aatctactctgtatac--tttgacc-----att-tatatt-gat-taca-ttta B D Hawaiian monk seal ---attcaaat-----aatctactctgtatat--tctgaac-----att-aaaatt-gat-taca-ttta B D Hedgehog --------------------------gcagaa--taaaatg-----att-aaaaat-aaatgacattttg B D Shrew ---tttctgat-----tatgtactttgtacat--tctgaac-----att-aaaaat-ggattgtatttaa B D Elephant ---ttaaaaac-----aatttaccctgtgtgt--tttgaac-----aat-aaaaat-tgattatatact- B D Tenrec ---cttcaaac-----aacctactttgtgtat--tctcaac-----att-aaaaat-tgattatgttgt- B D Zebrafish ====================================================================== B D X. tropicalis ====================================================================== B D Opossum ====================================================================== B D Chicken ====================================================================== Mouse --caaagaattttaa---------agtagtaaatgat--gttttataaaagcaaataatt Rat --cgaagaattttaa---------agtagtaaacaat--gtttcataaaagcaaataact GCF_003668045 --caaagaattttag---------atgactgaattac--attttataaaagcaagtaatt Beaver ttcactgaattttaa---------atcattaagttatcagttttataaaaacaagtaatt Squirrel tacactgaatttgaaatcatatttattattgattagttagttttacaaaagcaagtgatt Guinea pig tacact-aatttaaa---------ataatcaaattaccagtttgataagaggagataatt Rabbit cactctaaagtgtaa---------atcactaatgtatcagatttgtaaaagcaagtaatt Pika cacaatgaagtgcaa---------atcactaatttaccggattaatagaagcaagtaatt Human tatactaaattttaa---------atcactaaattatcacatttataaaagaatataatt Chimp tatactaaattttaa---------atcactaaattatcacatttataaaagaatataatt Bonobo tatactaaattttaa---------atcactaaattatcacatttataaaagaatataatt Gorilla tatactaaattttaa---------atcactaaattatcacatttataaaagaatataatt Rhesus tatactaaattttaa---------accactaaattatcacatttataaaataatataatt Marmoset tatactaaattttaa---------atcactaaattatcacatttataaaagaata----- Tarsier tatgccgaat----------------cac-aaattatcagatttttaaaagcaagtaat- Bushbaby tacactgaat----------------cactaaattaccagattcataaaaccaggcaatt Tree shrew tacactgaatattaa---------atcattaaattatcagatttacagaagcaagaaatt Malayan flying lemur tacactgaattttaa---------atcattaa---atcagattcatataagcaagtaatt Pig tacagtgaatatcaa---------atcactaaattgtcagattta------tgagtaaca Dolphin tacagtgaatatcaa---------gtcacttaattatcagatttataagagtaagtaact Cow tgcagtgactatcaa---------atcactaaattatcagatttataaaaatgagtaatt Sheep tgcagtgactatcaa---------atcactaaatgatcaggtttataagaatgagtaatt Horse tacagtgaatattaa---------atcactaaattatcagatttataagagcaagtaact Chinese pangolin tacact-aatattta---------attaccaaattgtcagatttataaaagcaagcaaat Dog aacact-gatattat---------atcactaaattatgagatttgtaaaggcaagtaaat Hawaiian monk seal aacactaaatattat---------atcactaaattatgagatttataaaagcaagcaaat Hedgehog -acactgaatattaa---------at----atatcacttaatttataaaatc-aacaact Shrew tacactgaatattaa---------attctcaaattataagatttataaaagcaaataact Elephant ------gaatattaa---------atcactaaattcttggatttatataagtaag----t Tenrec ---------tactga---------atgactaaattttgggacttataaaaggaagcaact Zebrafish ============================================================ X. tropicalis ============================================================ Opossum ============================================================ Chicken ============================================================ Alignment block 21 of 407 in window, 56748699 - 56748737, 39 bps B D Mouse caaggaaaggg-ggcagac--aaat----aaa-tgt--tgttctcaata B D Rat tcaggaaaatg-ggtggac--aaat----aaa-tgt--tgttctaaata GCF_003668045 taaggaaaa---agtggcc--aaat----aga-tgc--tgttctaaatg Beaver taaagaaat-a-agtggcc--aaataataaaa-tat--cgatcta---- B D Squirrel t-----aaatc-agtggcc--acat---------at--tgctcta---- B D Guinea pig taaagaaat------agcc--aaat----caa-tat--tgctctg---- B D Rabbit aaaagaaat---aagtggc--caat----gaa-tgt--tgctcta---- B D Pika taaa--------agggggcaaaaaa----aaa-tac--tgctcta---- B D Human taaagaaat-a-agtaacc--aaat----aaa-tat--tgctcta---- B D Chimp taaagaaat-a-agtaacc--aaat----aaa-tat--tgctcta---- B D Bonobo taaagaaat-a-agtaacc--aaat----aaa-tat--tgctcta---- B D Gorilla taaagaaat-a-agtaacc--aaat----aaa-tat--tgctcta---- B D Rhesus taaagaaat-a-agtagcc--aaat----aaa-tat--tactcta---- B D Marmoset taaagaaat-a-agtagcc----------aaa-tat--tgctcta---- B D Tarsier taaagggaa-a-agtggcc--aaat----aaa-tat--tgctcta---- B D Bushbaby taaagaaat-a-agtggcc--aaac----aaattat--ttcttga---- B D Tree shrew taaag-----a-agtaacc--aaat----aaa-tattatgctcta---- B D Pig t----aaat-a-agtgaac---agc------t-tat--tgttcta---- B D Dolphin t----aaat-a-agtggcc--aaat----aag-tat--tgctcta---- B D Cow t----aaac-a-agtggcc---aat----aag-tat--tgttctg---- B D Sheep t----aaac-a-agtggcc---aat----aag-cat--tgttcta---- B D Horse t----aaat-a-agtgttc--aaat----aag-tat--tgttcta---- B D Chinese pangolin taaagaaat-a-agtggct--ggat----aag-tat--tgttcta---- B D Dog gagagacat-a-agtggct--aaat----aag-tat--tgttcta---- B D Hawaiian monk seal gaaagacgc-a-agtggcc--aaat----aag-tat--tattcta---- B D Hedgehog t----aa---a-agtagcc--aaat----aag-tac--tgttcta---- B D Shrew t----aaag-a-agtggtt--aaat----a------------------- B D Elephant --cagaaat-a-agtgctc--gaat----aag-tat--tgttcta---- B D Tenrec --caaaaaa-atagtgctg--aaat----aaa-tat--tgtttta---- B D Zebrafish ================================================= B D X. tropicalis ================================================= B D Opossum ================================================= B D Chicken ================================================= B D Malayan flying lemur NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN Inserts between block 21 and 22 in window B D Pig 4bp B D Dolphin 4bp B D Cow 4bp B D Sheep 4bp B D Dog 251bp B D Hedgehog 4bp Alignment block 22 of 407 in window, 56748738 - 56748791, 54 bps B D Mouse ttataatactt-----aa-----gaga-------acagggc------------------ccc--agata- B D Rat ttataatactt-----aa-----gaga-------acaggcc------------------ccc--agata- GCF_003668045 ttataatgctt-----aa-----gaga-------acaggcc------------------acc--aaatc- Beaver ----aatactt-----ag-----gaga-------acaaatc-----------tttt-t-cca--gaatg- B D Squirrel ----aatattt-----aa-----gaga-------acacatttt--atttttttttt-t-aca--gaata- B D Guinea pig ----aatactt-----ag-----gaga-------ataagtt----------tttct-t-ctg--aacta- B D Rabbit ----agtattt-----aa-----gaga-------atgaggc----------atttt-t-cca--aaata- B D Pika ----gatagtg-----aa-----gaga-------atg-----------------------ca--gaata- B D Human ----aatactt-----aa-----taag-------cta--------------ttttt-t-cca--gaata- B D Chimp ----aatactt-----aa-----taag-------cta--------------ttttt-t-cca--gaata- B D Bonobo ----aatactt-----aa-----taag-------cta--------------ttttt-t-cca--gaata- B D Gorilla ----aatactt-----aa-----taag-------cta--------------ttttt-t-cca--gaata- B D Rhesus ----aatactt-----aa-----taaa-------cta--------------atttt-t-cca--gaata- B D Marmoset ----aatactt-----tg-----ttat-------ttagatg------ttacttttt-t-cca--gaata- B D Tarsier ----aattctt-----ag-----aaaaaacaagtttc--------------tttcc-t-aaa--gtata- B D Bushbaby ----aatactt-----aaaagagcaag-------tta--------------tttttgt-cca--gagtaa B D Tree shrew ----aatacttgtaagaa-----caag-------ata--------------tgtat-a-tct--gatat- B D Pig --------ttt-----aa-----gaga-------acaagttaa--aa----gtttt-t-tca--gcaga- B D Dolphin --------ctt------------gagg-------acaagtcaa--aa----ttttt-ttgca--gaaga- B D Cow --------ctt------------gaga-------aaaaattaa--aa----ttttt-t------gaaga- B D Sheep --------ctt------------gaga-------aaaaattaa--aa----aattt-t------gaaca- B D Horse ----aatactt-------------aga-------acaagttaa--at----ttttt-t-cta--gaaga- B D Chinese pangolin ----aatactc-----aa-----gaga-------acaagttaa--at----atttt-t-cta--gaacc- B D Hawaiian monk seal ----aatacat-----aa-----gaga-------acaagttaa--tt----ttttt-t-cca--gaaga- B D Hedgehog --------tct-----aa-----gaga-------acaaattaa--ca----tgttt-t-ttagaaaaaa- B D Shrew ----------------aa-----ataa-------acaagttac--aa----ttttt-c-c----aaaag- B D Elephant ----aatgctt-----aa-----gaga-------ataagttaa--at----ttttt-c-cca--gaaga- B D Tenrec ----agtcctt-----aa-----gaga-------acatgttaagtat----ttttt-c-cca--gaaga- B D Dog ====================================================================== B D Zebrafish ====================================================================== B D X. tropicalis ====================================================================== B D Opossum ====================================================================== B D Chicken ====================================================================== B D Malayan flying lemur NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN Mouse -aaagg--at-attta----------tatc----------acgttg Rat -aaagg--at-actta----------tgtc----------aagtta GCF_003668045 -aaagg--at-atttc----------catc----------aaattt Beaver -aaaag--at-ttttg----------tatc----------aagcta Squirrel -aaaat--g--atttt----------aatc----------aaacta Guinea pig -aaaag--at-attta----------tata----------aaacta Rabbit -aaaag--aa-attta----------catt----------atactt Pika -aaaagatac-atgta----------tgct----------caactt Human -aaa----at-attta----------tatg----------aaactt Chimp -aaa----at-gttta----------tatg----------aaactt Bonobo -aaa----at-attta----------tatg----------aaactt Gorilla -aaa----at-attta----------tatg----------aaactt Rhesus -aaa----a------a----------tatc----------aaactt Marmoset -aat----aa-aatta----------tatt----------aaactt Tarsier -aag----at-attta----------tatc----------atactt Bushbaby caag----at-gttta----------catc----------aaacct Tree shrew -ata----at-ttttaacagcatacctatc----------acattt Pig -g-aag--ac-attca----------tatc----------aaactt Dolphin -aaaag--ac-atttg----------tatc----------aaactt Cow -aaaag--ac-atttg----------tatc----------agactt Sheep -gaaag--ac-atttg----------tatc----------aaactt Horse -agaag--at-atttg----------aatc----------gaactt Chinese pangolin -aaaaa--at-at--------------att----------aaactt Hawaiian monk seal -aaaag--at-attta----------tatcttaaatttggaaactt Hedgehog -aaaag--at-agcta----------tacc----------aaaatg Shrew -aaaag------gcta----------tcac----------aaactt Elephant -aaaag--atggttta----------tatt----------aaactc Tenrec -aaaag--atggttta----------tgct----------aaactt Dog ============================================== Zebrafish ============================================== X. tropicalis ============================================== Opossum ============================================== Chicken ============================================== Malayan flying lemur NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN Inserts between block 22 and 23 in window B D Hawaiian monk seal 25bp Alignment block 23 of 407 in window, 56748792 - 56748814, 23 bps B D Mouse atattta---------aaaagccctt-a-------------c--tgaa B D Rat atattta---------aacagttctt-a-------------c--tgaa GCF_003668045 atatttg---------aagagctctgaa-------------t--tgag Beaver atatctg---------aaaaattcttaa-------------ttgtgat B D Squirrel atatttg---------aaaagttctgaa-------------ttgtaac B D Guinea pig tcatttg---------aaaaatccttaa-------------ccgtagc B D Rabbit acatttg---------gaaatttcttac-------------ttgcaat B D Pika acctata---------gaacatttttaa-------------ttgcaat B D Human acatttg---------cgaagttcttaa-------------ttgcaat B D Chimp acatttg---------cgaagttcttaa-------------ttgcaat B D Bonobo acatttg---------cgaagttcttaa-------------ttgcaat B D Gorilla acacttg---------cgaagttcttaa-------------ttgcaat B D Rhesus acttttg---------caaagttctcaa-------------ttgcaat B D Marmoset acatttg---------cagagttcttaa-------------ttgcaat B D Tarsier acatttg---------cagagttcttaa-------------ttgcaat B D Bushbaby gcgtttg---------aaaagtt---aa-------------ctgcaat B D Tree shrew acatttg---------gaaagttcttaa-------------ttagcaa B D Pig tcatttg---------gaaagttct----------------tgga--- B D Dolphin tcgtttg---------gaaagttcttaa-------------tggc--- B D Cow tcatttg---------gaaagttcttaa-------------tggc--- B D Sheep tcatttg---------gaaagttcttaa-------------tggc--- B D Horse aaatttg---------gaaagttcttaa-------------ttgc--- B D Chinese pangolin aaatttg---------caaagttcgtaa-------------ttgc--- B D Dog aaatttg---------gaaacttcttaa-------------ttgc--- B D Hawaiian monk seal ttatttgagagagagagagacagcacaa---------------gc--- B D Hedgehog gagtttg---------gaaatttcttaa-------------ttac--- B D Shrew aaa-ttg---------aataattcttaa-------------ttgc--- B D Elephant ccctttg---------gaaaattcttac-------------------- B D Tenrec acctttg---------gacaatttttatcatagtttgtaaa------- B D Zebrafish ================================================ B D X. tropicalis ================================================ B D Opossum ================================================ B D Chicken ================================================ B D Malayan flying lemur NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN Inserts between block 23 and 24 in window B D Pig 3bp B D Dolphin 3bp B D Cow 3bp B D Sheep 3bp B D Horse 3bp B D Chinese pangolin 3bp B D Dog 3bp B D Hawaiian monk seal 153bp B D Hedgehog 3bp B D Shrew 3bp Alignment block 24 of 407 in window, 56748815 - 56748933, 119 bps B D Mouse atgt---tatcccattctgccat------------tta----------------ggttgatacttcaaat B D Rat atgt---tattccattctgccat------------tta----------------ggtagataattcaaat GCF_003668045 atgt---tgccccatactgccat------------gtc----------------aggagataattcaaat Beaver atgc---tattctgcaatgccat------------gta----------------tttagataattcaaat B D Squirrel atgcttgtcttctgccttgtcat------------gta----------------ggtaggaaattaaaat B D Guinea pig atactaatcttctgtatttccatgtatataggtaggta----------------ggtagataatttaaat B D Rabbit atgctaatcttctgcatggtgac------------gta----------------gttagaaaattgaaat B D Pika atgctaatcttctaccttatggt------------gta----------------attagaaaattcaaat B D Human atgctaatcttctgcattgcaat------------gta---------tttaatagttagataattcaaat B D Chimp atgctaatcttctgcattgcaat------------gta---------tttaatagttagataattcaaat B D Bonobo atgctaatcttctgcattgcaat------------gta---------tttaatagttagataattcaaat B D Gorilla aggctaatcttctgcattgcaat------------gta---------tttaatagttagataattcaaat B D Rhesus atgctaatcttctgcattgcaat------------gta---------tttaatagttagataattcaaat B D Marmoset atgctaatcttctgcattgccat------------gtat--------tttaatagttagataattcaaat B D Tarsier gtgtgaatcttctgca-tgccat------------gta----------------gttagataattc-aat B D Bushbaby atgctaatcttccgtattgccct------------gta----------------gttagataattcaaat B D Tree shrew atgctaatcatgtgcattgccat------------aca----------------gttagaccatttcaat B D Pig atgctaatcttctgcattgccat------------gta----------------gtacggtaatactaat B D Dolphin atgctaatcttctgcattgccat------------gta----------------gcaagataatacaaat B D Cow ctgctaaccttctgcattgccat------------gtt----------------gtaagataatataaat B D Sheep ctgctaaccttctgcattgctat------------gtt----------------gtaagatactataaac B D Horse atgctaatcttctgcattgccat------------gta----------------ataaaataattcaaat B D Chinese pangolin gtgttgaccttctacattgccat------------ata----------------gtaaggtaattaaaat B D Dog atgctaatcttctccattgccag------------gta----------------ataatataattcagat B D Hawaiian monk seal atgctaatcttctgcattgccat------------gta----------------gtaatataattcagat B D Hedgehog atgccaatattgtgcagtgtcat------------gta----------------gtaagataatttaaac B D Shrew atgccaaatttctacatcattat------------gta----------------gtaagataattcaaat B D Elephant ---------------------------------------------------------atgtaat------ B D Tenrec -------ttttaagcagtgccag------------gcattaaggcaatttaaagatgaggcaatttaag- B D Zebrafish ====================================================================== B D X. tropicalis ====================================================================== B D Opossum ====================================================================== B D Chicken ====================================================================== B D Malayan flying lemur NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN Mouse aacacacaatcataaaaac-tt-cagagtttctaagcacaacata-------------------gatcag Rat gacacaggatcataaaacg-tt-cagagtttctaagcacaacatg-------------------aatcag GCF_003668045 gttacacaatcataaaact-gc-aagagtttctaagcacaaccta-------------------aaccag Beaver gatgcaaaatttcaaaaac-ctgaaaagtttctaagcacaatatg-------------------aatcag Squirrel gatacagaatttcagaata-tg-aaaag---------------ta-------------------aatcag Guinea pig gttgcaaagtttcaaaacc-tg-aactttttctgagtataatgta-------------------aatcaa Rabbit gttgaaaaatttcaaaacc-tg-aaaagtttctaagcataatgta-------------------agttag Pika gtt-agaaatataaaaacc-tg-aaaagtttggaaagccaacata-------------------aattag Human gatgtaaaatttcaaaacc-tg-aaaagtttctaagaataatata-------------------aattag Chimp gatgtaaaatttcaaaacc-tg-aaaagtttctaagaataatata-------------------aattag Bonobo gatgtaaaatttcaaaacc-tg-aaaagtttctaagaataatata-------------------aattag Gorilla gatgtaaaatttcaaaacc-tg-aaaagtttctaagaataatata-------------------aattag Rhesus gatgtaaaatttcaaaacc-tg-aaaagtttttaagaataatata-------------------aatcag Marmoset gatgtaaaatttccaaacc-tg---gagtttctaagaataatata-------------------agtcag Tarsier aatgtaaaacttcaagaac-tg-aaaagtttctaagcacaatgta-------------------aatcac Bushbaby gacttaacatttaaaaacc-tg-aaaagtctccaagcagaatgtt-------------------aatcag Tree shrew gatgtgaaattttaaaatc-tg-aaaagtttctaggcaaaatgca-------------------aggtag Pig gatgtaaattatcaaaact-tg--aacattttaaagcataat-ta-------------------aatcag Dolphin gatgtaaaatatcaaaact-tg-aaaaatttctgtgcataat-ta-------------------aatcag Cow gatgtaaaatttcaaaact-tg-aaaaatttccatgcataat-ta-------------------agtcag Sheep gatgtaaaatttcaaaact-tg-aaaaatttccatgcataat-taagtcagttcagttcagttcagtcag Horse gatataaaatttccaaacc-tg---aaaagtttaagcacaat-ga-------------------aattgg Chinese pangolin gatgtaaattttcaaaact-tc---aagtttctaagcacaat-ta-------------------aatcag Dog gatgtaaaatttcaaaact-tg-aaaagtttctaagtacaat-ta-------------------aatcag Hawaiian monk seal gatgtaaaatttcaaaact-tg-aaaagtttctaagcacaat-ta-------------------aatcag Hedgehog actgtagaatttataaact-ta-aaagatccca-aatccaat-ta-------------------aattat Shrew gatgtaaaatttctgaact-tg-aaatgtttcacaatcaaat-tt-------------------agtta- Elephant -atgcaaatttccaaaacccgg-aaaagtttctaagcacagtgca-------------------gatcag Tenrec gatgcaaatttccaaaacagtg-aaaagtttctgagcacagtgaa-------------------aattgg Zebrafish ====================================================================== X. tropicalis ====================================================================== Opossum ====================================================================== Chicken ====================================================================== Malayan flying lemur NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN Mouse tggatac---------------tcttagga----------------tgaagactaaagatat Rat tggatac---------------tcttat----------------------gacaaaagatat GCF_003668045 tgtgtac--------aa-----cattatga----------------taaaggctgaagatag Beaver tagttat--------tc-----tattatcaaaatggta-ct-----taaatgctaaagatat Squirrel ttgctag--------tc-----tattatgattattaaa-atagtgcttaatactgacaatag Guinea pig tgac------------------tattatgtttgtcaaa-gtaatgtttagtgctgaaggtat Rabbit tggctac--------ac-----tattaggattatttaa-atggtg-tttatgctgaagatat Pika tggctgc--------tc-----tgtcaagactgttaga-atagtc-tttttgctgaagattt Human tggctac--------tc-----tatgataattatcaaa-atagtgcttaatgttgaagatgt Chimp tggctac--------tc-----tatgataattatcaaa-atagtgcttaatgttgaagatgt Bonobo tggctac--------tc-----tatgataattatcaaa-atagtgcttaatgttgaagatgt Gorilla tggctac--------tc-----tatgataattatgaaa-atagtgcttaatgttgaagatgt Rhesus tggctac--------tc-----tatgataattatcaaa-atagtgcttaatgctgaagatgt Marmoset tggctac--------tc-----taagataattatcaaa-atagtgcttaatgctgaagaagt Tarsier tagctac--------tc-----tattataatcatcaaa-atagtgcttagtgctgaagatgt Bushbaby tagctgc--------tc-----tgttatgatga-gaaa-atagtgctcagtgctg-agatgt Tree shrew tggctat--------tcaataatatgatgattatggaa-at--------------------- Pig tagctac--------tc-----tattataattatcaaa-atagtgcttaatgctgaagatgt Dolphin tagctac--------tc-----tattatgattatcaaa-atagtgcttaatgctgaaggtgt Cow cagctac--------tc----------taactatcaaa-atagtgcttaatgctgaagatgt Sheep cagctac--------tc-----tattatagctgtcaaa-atagtgcttaatgctgaaggtgt Horse tagctac--------tc-----tatt---gttatcaaa-atagtgcttaatgctgaaagtgt Chinese pangolin tggttat--------tc-----tattataattatcaga-atagtgcttaacgatgaaggtgt Dog tggttac--------tc-----tattataattatcaaa-atagtccttaatgatgaaggtgt Hawaiian monk seal tggttac--------tc-----tattataattatcaaa-attgtgcttaatgatgaaggtgt Hedgehog aaattagcgcttgtcct-----tgttacaatgatcaca-atagttcttgatgctgaagatat Shrew ---------------ct-----cattacaatgtccaaa-acagagtttaatggtgaaggtat Elephant tggatac--------tc-----tattataatgattaaa-atagtgcttggtgctgaagatgt Tenrec tggatat--------tc-----taatataatgatcacatttagtgcttaggattgaaga-gt Zebrafish ============================================================== X. tropicalis ============================================================== Opossum ============================================================== Chicken ============================================================== Malayan flying lemur NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN Inserts between block 24 and 25 in window B D Tree shrew 522bp Alignment block 25 of 407 in window, 56748934 - 56748953, 20 bps B D Mouse gttaaggagacaaa---------------------------------------------cacttc B D Rat gttaaggagacaaa---------------------------------------------aacctc GCF_003668045 gttaaggaggcaaa---------------------------------------------cacttc Beaver gttaagtaggcaca------taaac--aggttg--tcaatttttgat------------cagttt B D Squirrel gctacataggcata------taagcttaggttgtatcagtttttgatctgtttt----ggacttt B D Guinea pig tctaagtaggttca------taaacttatgctgtctttttttttttttttttttttgagcaattt B D Rabbit gtgaagtaggctga------------taggagataccattttttgag------------aaattt B D Pika gctaagtaggcaca----------tgtaggctgtatcatttttggag------------ccattt B D Human gccaag-------------------ttc------------------------------------- B D Chimp gccaag-------------------ttc------------------------------------- B D Bonobo gccaag-------------------ttc------------------------------------- B D Gorilla gccaag-------------------ttc------------------------------------- B D Rhesus gctaagtaggcaca------taaacttc------------------------------------- B D Marmoset accaagtaggcaca------taaatttc------------------------------------- B D Tarsier gctaagtaggcaca------taagctta------------------------------------- B D Bushbaby ggcaagtaggcaca------tacactta------------------------------------- B D Pig gctaagtagac------------acttagagtatgttatctt----------------------- B D Dolphin gctaagtagacaca------tacacttagactgtgtcatttt----------------------- B D Cow gctaagtagacaca------tatacttagaatgtatcatttt----------------------- B D Sheep gctaagtagacaca------tatacttagaatgtatcatttt----------------------- B D Horse gctaagtggacac--------aaacttaggctgtgtcatttt----------------------- B D Chinese pangolin gctaattaggcaca------taaacttaggccgtgccatttt----------------------- B D Dog tctaagtaggcaca------gaaatttaggctgtgtcatttt----------------------- B D Hawaiian monk seal gctgagtaggcgca------gaaactgaggctgtgtcatttt----------------------- B D Hedgehog gctaaattggcaag------taga-----acgttatcatttt----------------------- B D Shrew gcaaagtaggcgca------tagctt---acactgtcatttt----------------------- B D Elephant gctaagtagccaca------tagact--------------------------------------- B D Tenrec gctaagtagtcataacaacttaagct--------------------------------------- B D Tree shrew ================================================================= B D Zebrafish ================================================================= B D X. tropicalis ================================================================= B D Opossum ================================================================= B D Chicken ================================================================= B D Malayan flying lemur NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN Inserts between block 25 and 26 in window B D Guinea pig 3bp B D Rabbit 4bp B D Pika 3bp B D Human 29bp B D Chimp 29bp B D Bonobo 29bp B D Gorilla 29bp B D Rhesus 27bp B D Marmoset 27bp B D Tarsier 28bp B D Bushbaby 29bp B D Pig 14bp B D Dolphin 14bp B D Cow 14bp B D Sheep 14bp B D Horse 14bp B D Chinese pangolin 14bp B D Dog 14bp B D Hawaiian monk seal 14bp B D Hedgehog 14bp B D Shrew 14bp Alignment block 26 of 407 in window, 56748954 - 56749100, 147 bps B D Mouse ------------------acgttagacattaat-------ttggtgtaaaatta----cat---ttaaaa B D Rat ------------------actttagagattaat-------ttggtgtaaaatta----ca----taaaaa GCF_003668045 ------------------actttagacactgatt-t-c--ttgatgtaatatta----ca-----ataag Beaver ------------------tcttcagatattgag-----------ggtaaaatta----ta----tattaa B D Squirrel ------------------acctt---cattaag-----------ggtaaagtga----ta----tattaa B D Guinea pig ------------------actttggatattgatt-t-caatgaggattaaatta----ta------tcaa B D Rabbit ------------------aacttagacattgatg-t-cattaaatgtaaaattaattata----tcttaa B D Pika ------------------accttggacattgatg-t-cactaagggtaaaattaaatgta----tcctaa B D Human ------------------actttagacattgatt-t-catgtaaggttaaattg----ca----cattaa B D Chimp ------------------actttagacattgatt-t-catgtaaggttaaattg----ca----cattaa B D Bonobo ------------------actttagacattgatt-t-catgtaaggttaaattg----ca----cattaa B D Gorilla ------------------actttagacattgatt-t-catgtaaggttaaattg----ca----cattaa B D Rhesus ------------------actttagacattgatt-t-cgtgtaaagttaaatta----ca----cagtaa B D Marmoset ------------------actttagacattgatt-t-catgtaggcttaaatta----ca----cataaa B D Tarsier ------------------actttagacatttatt-t-cattgagggcaaaattg----tc----tattaa B D Bushbaby ------------------attttagacattgatt-t-cgttgaaggtaaaatta----ta----ttttac B D Tree shrew ------------------actttagacattgatt-t-cattaagggtacaatta----ca----tattaa B D Pig ------------------aatttagacattaatt-a-ccttgagggtaaaatta----ta----cattaa B D Dolphin ------------------aatttagatgttgatt---------------aaata----ta----cattaa B D Cow ------------------agtttagacattaatt-t-ccttgagggtaaagtta----ta----cattaa B D Sheep ------------------agtttagacattaatt-t-ccttgagggtaaagtta----ta----cattaa B D Horse ------------------aatttagacattgttt-tccatgagggt-aaaatta----ta----cattaa B D Chinese pangolin ------------------aatttagactttgatt-t-ccttgagggtaaaatta----ta----tat--- B D Dog ------------------aatttagaccttgact-t-ccttgagggtaaaattc----ta----tactaa B D Hawaiian monk seal ------------------aatttagacattgatt-t-ccttgagtgtaaaattc----ta----tactaa B D Hedgehog ------------------agtgcaggcattgactat-tcttgaagataaaatca----tatttccattaa B D Shrew ------------------agcatagacattgatt-t-ccttgagggcaaaatca----ta----cataaa B D Elephant atgtaatttttgtgaacaattttgga-----att-t-ccttgagggtaaaatta----ta----cattag B D Tenrec atgtca--tttgtgagtaattttgga-----att-t-c----agcattgatttc----ct----tgaggg B D Zebrafish ====================================================================== B D X. tropicalis ====================================================================== B D Opossum ====================================================================== B D Chicken ====================================================================== B D Malayan flying lemur NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN Mouse ct-cataggaactaa------------ga----ac----acatag-----------------g--att-- Rat tg-cttaagaactta------------ga----ac----acacag-----------------g--att-- GCF_003668045 ct-cataaga-------------------------------atag-----------------g--agt-- Beaver ta-ctttctgacaaa------------at----gc----aaaaa-------------------------- Squirrel ca-ttcacttataaaaatgcaaaggtgaa----gt----gtatag-----------------c--ata-- Guinea pig ca-cttgctcagaaa------------aa----at----gcaaagataaagc----------a--tgt-- Rabbit ta-cttgttca-aaa------------ac----at----gcagagatcaagtgtgttgcatat--att-- Pika ca-cttgctc--aaa------------ac----at----gccaagatcaagtgtgttgtgcag--tct-- Human ta-cttgttta-taa------------ac----at----acaaaggtaaa------------g--tgt-- Chimp ta-cttgttta-taa------------ac----at----acaaaggtaaa------------g--tgt-- Bonobo ta-cttgttta-taa------------ac----at----acaaaggtaaa------------g--tgt-- Gorilla ta-cttgttta-taa------------ac----at----acaaaggtaaa------------g--tgt-- Rhesus ta-cttgttta-taa------------ac----at----acaaaggtaaa------------g--tgt-- Marmoset ta-cttgttca-taa------------ag----aa----acaaaggtaaa------------g--tgt-- Tarsier ta-cttgctca-taa------------ac----ag----g-aaaggtaaact----------g--tgt-- Bushbaby ta-ctttttca-taa------------ac----at----gcaaaagtaaa------------g--tg--- Tree shrew ta-cttgccca-taa------------ac----at----gtggatgtaaa------------gtatgt-- Pig ag-ctggctca-tag------------aca----t----gcaaatgtaaggc----------a--tgt-- Dolphin aa-cttgctca-taa------------acaaacat----gcaaat-----gt----------g--tgt-- Cow aa-tttgctca-tca------------acaaactt----ggaaatgtaaggt----------g--tgt-- Sheep aa-tttgttca-tca------------acaaactt----ggaaatgtaaggt----------g--tgt-- Horse ta-cttgctca-tga------------ac----at----gcaaagataagtt----------g--tgt-- Chinese pangolin ---------------------------at----at----acatatata---------------------- Dog ta-tttgctca-taa------------acaagaaa----gcagtgataaggt----------g--tctca Hawaiian monk seal ta-cttgctca-taa------------acaaaaaa----gcaatggtaaggt----------g--tgt-- Hedgehog ta-tttctgcc-taa------------acaa--ac----atagagttgcagc----------a--agt-- Shrew ta-cttgctca-taa------------gcaaacac----atacaggcaaagc----------a--aac-- Elephant ta-gctcttca-tag------------acaaatat----gcaaaggttagat----------g--tgt-- Tenrec aatgtatttca-tac------------atgaatatttcctcataaacaaa-------------------- Zebrafish ====================================================================== X. tropicalis ====================================================================== Opossum ====================================================================== Chicken ====================================================================== Malayan flying lemur NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN Mouse ---------------------------------------tgca----tatgtgtgtatttctctta---- Rat ---------------------------------------tgca----tatgtgtgtatttctcttg---- GCF_003668045 ---------------------------------------tgcatgtgtgtgtgtgtatttctcttg---- Beaver ---------------------------------------tgaa----gaaatttgcatttctcttgc--- Squirrel ---------------------------------------tgtg----tgtgtgtgcatttctctta---- Guinea pig ---------------------------------------tgca----tatatgcatgcatttcttac--- Rabbit ---------------------------------------agta----tatgtgtgcattcctcttac--- Pika ---------------------------------------agca----tatgtgtgcattcccctcgc--- Human ---------------------------------------tgcc--catatatgtgcatttctcttac--- Chimp ---------------------------------------tgcc--catatatgtgcatttctcttac--- Bonobo ---------------------------------------tgcc--catatatgtgcatttctcttac--- Gorilla ---------------------------------------tgcc--catatatgtgcatttctcttac--- Rhesus ---------------------------------------tgcc--catatatgtgcatttctcttac--- Marmoset ---------------------------------------taca--catatatgttcatttctcttac--- Tarsier ---------------------------------------tgta--ctcatatgtccatttctgttac--- Bushbaby -------------------------------------------------------catttctcttac--- Tree shrew ---------------------------------------tcca--tgtatacatgtatttttctttc--- Pig ----------------tgtgtgtgtgt--------------------cacacacacacttctcttac--- Dolphin ----------------tgtgtgtgtgtattcc----------a--tacatatatgcatttctcctac--- Cow ------------tgtgtgtgtgtgtgtattcc--------ata--tatgtatatgcatttctcctac--- Sheep --------------tgtgtgtgtgtgtattccatatatatata--tatatatatgcatttctcctac--- Horse -------------------------------------tgtata--tgtatatgtgcatttctcatac--- Chinese pangolin -------------------------------------tatata--tatatatatgtat-----atat--- Dog tatatatatatatatatatatataagtgtctcatatatatgca--tatatatatgcatttctcttac--- Hawaiian monk seal -----------------------------------tgtgtgta--tatatatgtgcatttctcttac--- Hedgehog --------------------------------------------------ctcagcaattctcttgcctt Shrew --------------------------------------------------atatgtgtttgtcttaccat Elephant ---------------------------------------tata--t-tgtgtttacattgctcttac--- Tenrec ---------------------------------------catg--c-aaaggtta-gttg-tgatat--- Zebrafish ====================================================================== X. tropicalis ====================================================================== Opossum ====================================================================== Chicken ====================================================================== Malayan flying lemur NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN Mouse ------------aaata--------------------ttctaaa--------gctaattttaatgtta-c Rat ------------aaata--------------------ttctaaa--------gctaagtttaatttta-c GCF_003668045 ------------caata-------------------tttttaaa--------gctaactttaatttta-c Beaver ------------cagta--------------------gtcaaaa--------ggcagctttaatttta-g Squirrel -------------------------------------cttg----------------------------- Guinea pig ------------cagta--------------------ttcaaag--------ggcagctttaattttt-a Rabbit ------------ccata--------------------ttcaaag--------ggcagctttatttttc-a Pika ------------tcata--------------------tacagaa--------agaaactttcttgctc-a Human ------------caata--------------------ttcaaag--------ggcagatttattttta-a Chimp ------------caata--------------------ttcaaag--------ggcagatttattttta-a Bonobo ------------caata--------------------ttcaaag--------ggcagatttattttta-a Gorilla ------------caata--------------------ttcaaag--------ggcagatttattttta-a Rhesus ------------caatg--------------------ttcaaag--------ggcagatttattttta-a Marmoset ------------caata--------------------tttaaag--------gacagattta-gttta-a Tarsier ------------caaca--------------------tacaaag--------ggaagatttatctttt-a Bushbaby ------------tgata--------------------ctaaaag--------ggcagatttatttttg-a Tree shrew ------------taata--------------------ctcaatg--------ggcaattttattttta-a Pig ------------cagta--------------------ttcaaagggcagcttggtagctttattttttaa Dolphin ------------aaata--------------------ttcaaag--------ggtagttttatttttt-t Cow ------------aaata--------------------tttgaag--------ggtaattttatttttt-a Sheep ------------aaata--------------------tttgaag--------ggtaatttta----tt-a Horse ------------caata--------------------ttcaaag--------ggcagctttattttta-c Chinese pangolin ------------atata-----------------------------------------tatatatata-c Dog ------------aaata--------------------ttcaaag--------ggcaggtttattttta-a Hawaiian monk seal ------------caata--------------------ttcaaag--------ggcagctttattttta-a Hedgehog ctg-ccagtatgcaata--------------------ttcaaag--------ggcaact----------- Shrew atattcagatctcaaaa--------------------tttaagg--------gtggagttaattt-ta-a Elephant ------------cagta--------------------tttaaag--------ggcagcttta-tttta-a Tenrec ------------atgtagcagtttctctcacccatatttaaaag--------agcagctttgtttttt-a Zebrafish ====================================================================== X. tropicalis ====================================================================== Opossum ====================================================================== Chicken ====================================================================== Malayan flying lemur NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN Mouse atgt--ccaccacccccccaccactaccaca Rat a-----acacccccccccaaaca----cata GCF_003668045 aagttgccactgcccc-------------ta Beaver aag---tcattt-----------------tt Squirrel ------ttatct-----------------tt Guinea pig ggta--caactt-----------------tt Rabbit aagttttttttt-----------------tt Pika aag---tcattt-----------------tc Human aag---ttattt-----------------tt Chimp aag---ttattt-----------------tt Bonobo aag---ttattt-----------------tt Gorilla aag---ttattt-----------------tt Rhesus aag---ttattt-----------------tt Marmoset aag---ttattt-----------------tt Tarsier aag---ttattt-----------------tt Bushbaby aag---ttattt-----------------tt Tree shrew aag---ttactt-----------------tt Pig aag---tcattt-----------------tt Dolphin aag---ttatat-----------------tt Cow agg---ttattt-----------------tt Sheep agg---ttattt-----------------tt Horse aag---ttactt-----------------tt Chinese pangolin aca---tttctc-----------------tt Dog aaa---tcattt-----------------tt Hawaiian monk seal aag---ttattt-----------------tt Hedgehog ------ttattt-----------------tt Shrew agg---ttattt-----------------tt Elephant aag---ttattt-----------------tt Tenrec aag---ttgttc-----------------tt Zebrafish =============================== X. tropicalis =============================== Opossum =============================== Chicken =============================== Malayan flying lemur NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN Inserts between block 26 and 27 in window B D Tree shrew 2bp Alignment block 27 of 407 in window, 56749101 - 56749533, 433 bps B D Mouse caaagtattg-------tcaat---at-at---------tctgataaaaa-attaac------ttaggca B D Rat cacagtgttg-------tcaac---at-at---------tctgataaaaa-gttaac------tcacgta GCF_003668045 caaagtattg-------ttagc---at-at---------tcggataaaaaggttaac------tcaggta Beaver taaaatgtta-------tcaat----------------------caaagc-ataaac------tcaggta B D Squirrel caaaatgtta-------tta------t-at---------tccaaccaaaatgtgaac------tcaggta B D Guinea pig ggaaatgtcg-------ttctcataat-at---------tctagccaaatgatgaac------tcaggta B D Rabbit cacagtgtta-------tcagc---at-at---------tccaatccaaatgtaaat------ctaggta B D Pika cacaatgtaa-------ccagc---at-at---------tccaactcagttgtgaac------ccaggca B D Human caaaatggaa-------tcagc---at-at---------ttcaaccaaaatgtaaac------tctggta B D Chimp caaaatggaa-------tcagc---at-at---------ttcaaccaaaatgtaaac------tctggta B D Bonobo caaaatggaa-------tcagc---at-at---------ttcaaccaaaatgtaaac------tctggta B D Gorilla caaaatggaa-------tcagc---at-at---------ttcaaccaaaatgtaaac------tctggta B D Rhesus caaaatggaa-------tcagc---at-at---------ttcaaccaaaatgtaaac------tcaggta B D Marmoset caaaatggtg-------tcagc---at-at---------ttcaaccaaaatgtaaac------tcaggca B D Tarsier caaaatgtta-------tcagc---at-at---------ttcagccaaaatgtaaac------tcaggta B D Bushbaby caaactgctagtacttgtcgct---gt-at---------ttcaaccaaaatgtcaat------ccaggta B D Tree shrew -aaaatgttt-------ttggc---ataat---------tttgaccaaaatgtaagc------tcaggtg B D Malayan flying lemur caaaatgtta-------tcagc---at-at---------tccaaccaaaatgtaaac------tcagata B D Pig caaagtgtta-------tcagt---gt------------tacaacccaagtttagcc------ttgggta B D Dolphin caaaatgtta-------tcagc---at-atgtccatttccacaaccctagtgtaaac------ttaggta B D Cow caaaatgtta-------tcagc---at-atgtaagtttctacaatcctagtataaac------ttgggta B D Sheep caaagtgtta-------tcagc---at-atgtatgtttctacaatcctagtgtaaac------ttgggta B D Horse caaaatgttg-------taagc---at-atgtacatttttacaaccaaaatgtaaac------tcaggta B D Chinese pangolin -------------------------------------------accaatattcaaag------ggaagt- B D Dog caaaatgtta-------tcagc---at-aagtacacttttacaat-caaatgtaaac------ttaagta B D Hawaiian monk seal caaaatgtta-------tcagc---at-aagtacacttttacaacaaaaatgtaaac------ttaagaa B D Hedgehog aaaaatatta-------tcagc---at-atgt-tgtttttacaac-aaaatgtgaac------tcagcta B D Shrew caaaatatta-------taaat---at-gta--catttttacaaa-caaatataaat------tcaggta B D Elephant caaaacgtta-------tcagt---at-at---------ttcaaccaaaatgtaaac------tcaagta B D Tenrec caaagtatta-------tcagt---at-at---------ttcaaccaaaatgtaaacttaaagtcaggtt B D Zebrafish ====================================================================== B D X. tropicalis ====================================================================== B D Opossum ====================================================================== B D Chicken ====================================================================== Mouse cca---tt-tg------cccc--------------------tgtg-------------gccagcaa-aac Rat cca---tt-tg------tctc--------------------tctg-------------gccagcaa-acc GCF_003668045 ccc---at-tg------cccc--------------------tctg-------------gccaacaa-aac Beaver tca---tt-tt------cctc--------------------tctgt---------ataattaataa-aac Squirrel aca---tt-tc------cccc--------------------tctgt---at--gaataactatcaa-aac Guinea pig gcc---tt-tt------tttc--------------------tctg---------tataattaacaa-aac Rabbit aca---tc-tc------cacc-c------------------tctg---------tatagtgagcaa-aac Pika aca---gc-tc------cccctt------------------tctg---------tataatgaacaa-aac Human aca---cg-ta--tttttccc--------------------tctgc---tt--atattatggacaataac Chimp aca---ca-ta--tttttccc--------------------tctgc---tt--atattatggacaaaaac Bonobo aca---ca-ta---ttttccc--------------------tctgc---tt--atattatggacaaaaac Gorilla aca---cg-ta--tttttccc--------------------tctgc---tt--atattatggacaaaaac Rhesus aca---ca-ta--tttttccc--------------------tctgt---tt--atattatggacaaaaac Marmoset aca---ca-tt-cttttttcc--------------------tcagt---tt--atattatggacaaaatc Tarsier aca---tg-t---ttggaaaa--------------------catgt---tt--atattatggacaa-aac Bushbaby aca---t------tttttcct--------------------tctgt---tt--atattttggacaa-aac Tree shrew tat---tcatcccctgcccct--------------------gccat---ct---taataagaacaa-agc Malayan flying lemur aca---tc-ccccctgccccc--------------------ccccc---ctccatattatgaacaa-aac Pig aga---ct-tt------tctc--------------------tat-----tt--gtattatgaacaa-aaa Dolphin aaa---ct-tt------tctc--------------------tat-----tt--gtattataaacaa-aaa Cow aca---ct-tt------tctc-----------------------------t--gtgttatgaacaa-aaa Sheep aca---ct-tt------tctc-----------------------------t--gtgttatgaacaa-aaa Horse aca---at-tt------ttct-c------------------tat-----tt--gtattatgaacaa-aat Chinese pangolin ------------------------------------------------------tattatgaacaa-aat Dog aca---tt-tc------tcct--------------------tat-----tt--gtattatgaacaa-aat Hawaiian monk seal aca---tt-tc------tcct-c------------------tat-----tt--gtattatgaacaa-aat Hedgehog aca---tt-tt------ttt---------------------tttccatctt--gtactatgaacaa-aca Shrew aca---ta-tt------ttct-ctatttgtatagagtaaaatttgtatttt--ctatt-tgggcaa-aat Elephant aca-gttt-tt------tttc--------------------tccat---tt--atattatgaacaa-act Tenrec acatgctt-ct------tccc--------------------tccat---tt--gtact----actc-cat Zebrafish ====================================================================== X. tropicalis ====================================================================== Opossum ====================================================================== Chicken ====================================================================== Mouse ttgaatgtccttgag----------aaagg-aa------a---g-c------------------------ Rat ttgaaagtcttaggg----------aaagg-ga------a---g-c------------------------ GCF_003668045 ttaaaagcccttaac----------aaagg-aa------a---g-c------------------------ Beaver ttgaaggtctttcgc----------a------a------a---g-c------------------------ Squirrel ttgaaagtttttgac----------aa-----a------a---g-c------------------------ Guinea pig ttgaaagtatttgat----------aaagg-aa------a---g-a------------------------ Rabbit ttgaaagtctttcac----------caaaa-aa------a---g-gg---gggggaggg----------- Pika tttaaagcctttcac----------caaaa-aa------a---g-gaggcgggggagggaggaagaatat Human ttgaatgtctttggc--c-------aaaaa-aa------a---g-c------------------------ Chimp ttgaatgtctttggc--c-------aaaaa-aa------a---g-c------------------------ Bonobo ttgaatgtctttggc--c-------aaaaa-aa------a---g-c------------------------ Gorilla ttgaatgtctttggc--c-------aaaaa-aa------a---g-c------------------------ Rhesus ttgaatgtctttggc--c-------aaaaa-aa------a---atc------------------------ Marmoset ttgaatgtctttggc--c-------aaata-aa------a---g-c------------------------ Tarsier ttgaaagtctttggc--c-------aaaat-a-------------t------------------------ Bushbaby ttgaaagtctttggc--c-------aaaaa-a-------g---g-c------------------------ Tree shrew ttggaaatttttcct--caagggaaaaaaa-aa------t---g-c------------------------ Malayan flying lemur ttgcaagtctctggc--caaaagaaaaaaa-ga------a---a-c------------------------ Pig ttgaaagtctttg-c----------aaaaa-aa------aaaat-c------------------------ Dolphin ttgaaagtctttggc--a-------aaaaa-aa------aaatt-c------------------------ Cow ttgaaagtctttgacaaa-------aaaaa-aa------aaatt-c------------------------ Sheep ttg--agtctttgac----------aaaaa-aa------aaatt-c------------------------ Horse ttgaaagtcttcagc----------aaaaa-aa------aaatt-c------------------------ Chinese pangolin tataaagtgtttgcc----------aaaaa-at------g---t-c------------------------ Dog tt-aaagttttcagc----------aaaag-ag------a--tt-c------------------------ Hawaiian monk seal ttgaaagcttttgac----------aa------------a--tt-c------------------------ Hedgehog ttcaaagtatttagc----------aaaca-aa------g---c-t------------------------ Shrew ttt--ggtctttggc----------aaaaataa------a---t-t------------------------ Elephant ttgagggtctttggt--taaa----gataa-aa------a---t-c------------------------ Tenrec ttgaaagtctttggt--taaa----aaaga-aaggaagta---t-c------------------------ Zebrafish ====================================================================== X. tropicalis ====================================================================== Opossum ====================================================================== Chicken ====================================================================== Mouse ---tg-aagaaatttgc-----------ct-gtaatgctttttgggcgtttgca-gttgtaaataattac Rat ---tg-aagaaatttgc-----------ct-gtgatac-ttttgggcttttgcc-gttataactaattac GCF_003668045 ---tgaaaaaaaatcac-----------ct-gcaatat-atttgggtgttcaca-gttataattaactac Beaver ---tgtaacatagttgc-----------cc-ctacaactttcagggcatttata-gttgttattaaatag Squirrel ---tg-aaaatttttgc-----------cc-aaaataa-tttagggcatttatg-gttgttattaaataa Guinea pig ---tc-aagaattttgc-----------tt-ataatactttcagggtactcaca-gttgttattaaatag Rabbit ---ta-aaaatgttttc-----------cc-ataatactttcagggaatttata-gtagttattaagtag Pika taata-aatttgcttcc-----------cctacattactttcagggcatttgca-gttgttactaagtag Human ---tt-taaaatttttc-----------cc------actttcagggcatttgtg-attgttattaaatag Chimp ---tt-taaaaattttc-----------cc------actttcagggcatttgtg-attgttattaaatag Bonobo ---tt-taaaaattttc-----------cc------actttcagggcatttgtg-attgttattaaatag Gorilla ---tt-taaaaattttc-----------cc------actttcagggcatttgtg-attgttattaaatag Rhesus ---tt-taaaaattttc-----------ca------actttcagagcatttgtg-attgttattaaatag Marmoset ---tt-taaaaattttc-----------cc------actttcagggcatttgtg-attgttattaaataa Tarsier ---ct-taaaaattttg-----------cccacaatactttcagggcattttta-gttgttattaactag Bushbaby ---ta-cagaaag-----------------------gggggaaggatatgtttacaattttattaaatag Tree shrew ---ta-aaaatttcttg-----------accataatacttccagggcatttatg-gttgttattaaatag Malayan flying lemur ---ct-aaaaatttttg-----------tccctaacttttccaaggcatttatg-attgttattaaatac Pig ---tc-aaaaattttgc-----------at-ataatacttttagggcatttata-gttgttactgattcg Dolphin ---tc-aaaatttttgc-----------ac-ataatacttttagttcatttatg-gttgttattaaatag Cow ---tt-aagatttttgc-----------cc-ataatacttttatggtatttatg-gttgttattaaatag Sheep ---tc-aagatttttgc-----------cc-ataatacttttatggtatttatg-gttgttattaaatag Horse ---ta-aaagtttttgc-----------ac-atagtgctttcagggcatttaca-gttgttattaaatag Chinese pangolin ---aa-atttttcttgc-----------at-attatactttcagggcattta----tgcttattaaatag Dog ---tc-aaaaattatgc-----------ac-ataatactttcagggcatttata-atttttggtaaatag Hawaiian monk seal ---tc-aaaaattatgc-----------ac-ataatactttcagggcacttata-atttttattaaatag Hedgehog ---ct-aaagattttttttttttttttgac-aaaacactttcagggcattt-ta-gttgctattgaatag Shrew ---ct-aaaaattttgc-----------ac-gtaacattttaagtgaattt----atcattactaaataa Elephant ---tt-gcaattttggc-----------ac-atgatattttcagggcatttaca----gttattaaagag Tenrec ----a-acatttttggc-----------ac-aca----ttttagggcatttacc-tttgttattaaaaag Zebrafish ====================================================================== X. tropicalis ====================================================================== Opossum ====================================================================== Chicken ====================================================================== Mouse tgtgatacc---ctttaatgctag-tttccttctggtgtgcaca--g-gggagactgagagttcagact- Rat tgtgttttc---ctttaatgctag-tttccttttggtgtgcaca--g-gggagattgagagttcagact- GCF_003668045 cgtgctatt---cttaaaagctag-tttccttttggtgcactca--gtgggggattgagagaacagact- Beaver tgagatatt---atgtgatatcag-tttcattttttaatataaa--ggaggaaactaaggttctcgaatg Squirrel tgcaaaatg---atattataccag-tttcattttagtgtataaa--ggaggaaattgagaattcagaat- Guinea pig cgcagtatt--------atactag-tttcattttagtatataaa--ggaggaagttgagaattcagtatc Rabbit tgcaatatt----tgtgatagcag-tttcattttagcatgcaaa--ggaggaaattgagacttcagagtc Pika agcaatagt---atgtaatacctg-tttcatttcggcatgcaaa--ggagaaaattcagatttcagaatc Human tgcaaaatt---atatgatactag-tttaattttattatacaaa--gaaggaaattgagaattcagaatc Chimp tgcaaaatt---atatgatactag-tttaattttattatacaaa--gaaggaaattgagaattcagaatc Bonobo tgcaaaatt---atatgatactag-tttaattttattatacaaa--gaaggaaattgagaattcagaatc Gorilla tgcaaaatt---atatgatactag-tttaattttattatacaaa--gaaggaaattgagaattcagaatc Rhesus cgcaatatt---atgtgatactag-tttaattttattatataaa--gaaggaaattgagaattcagaatc Marmoset tgcgatact---atacgatactag-tttaattttattatataaa--gaaggaaattgagaattcagaatc Tarsier tacagtatt---atatgatgccag-tttag------tatataaa--ggaggaaatcaagaattcagaatc Bushbaby cacaatatt---atatgacgccagctttcattttagtatctgaactgaaggagactgagaacttataatc Tree shrew tacggtatt---atatgatatcgg-tttcat--------------------------------------- Malayan flying lemur tgcaatatt---atatgattccag-tttcattttatcatataaa--ggaggaaattgagaattcagaatc Pig tgcactattataatatggtctcag-tttcattttattacatgaa--ggaggaaattgagggttcaggatc Dolphin tgtagtatt---atataatctcag-tttcattttagtatataaa--ggaggaaatcaagggttcaggatt Cow cgcactatt---acatgatctcag-tttcattttagttaataaa--ggaggaaattgagagttcaggatc Sheep cacactatt---atatgatctcag-tttcattttagttaataaa--ggaggaaattgagagttcaggatc Horse cgccatatt---gtatgatcctag-ttttattttagtatataaa--ggaagaaattgagaattcagaatc Chinese pangolin ttcaatatt---atatgatctcag-cttcattttagtacacaaa--ggaggaagttgagaattcagaatc Dog tgcaacatt---atatgagcctag-tttcaatttagtatataga--ggaggaaattgagaattcaaaatc Hawaiian monk seal tgcaatatt---atctgatcccag-tttcaatttagtatataga--ggaggaaattgagaattcagaatc Hedgehog tgcaatatg---atatgatcccag-tttcattttaacatataga--ggaggaaattgagactttagaatc Shrew ttcaatatt---atatgtccccag-tttagtttttatatgtaaa--ggaggatattgaaaattcagaatc Elephant tgcggtatt---atctaatgccag-gttcattttagtgtacaaa--ggtagaaattaagaatt-----ct Tenrec ggtagtctg---acatagcatcag-tttcattttg--atataaa--ggaagaaattaagaattgagagcc Zebrafish ====================================================================== X. tropicalis ====================================================================== Opossum ====================================================================== Chicken ====================================================================== Mouse -cagagcttagagc-gtg----ctttc---ttgggagacacctgtaaa-atggctacagaa-t-aagctg Rat -cagagcttagagc-atg----ttttc---ttggaagacacctgtaaa-atggctatagaa-c-aagctg GCF_003668045 -cagagctcagggt-ata----ttttc---ttggaagacacctgtaaa-atgaccacagaa-c-aagccg Beaver ataaagcttagagcaata----gcttc---tcagaagacacctgtgaa-attaccaaaggg-ctgaactg Squirrel -caggacttagagc-aca----ttttc---tcagaagtcccctataaa-attaccaaatgg-ctgaactg Guinea pig ataggacttagagc-aga----tttt----ttggaagacatttgttaa-attacca-agcc-t-gagtcg Rabbit acagggcttggtgc-ata----tttcc---ccagaagacacctgtaaa-attaccaaaggg-ttgaattg Pika atagggcttcatgt-gta----ttttg---ccaggagacacctgtaaa-attaccagaggg-ttgaactg Human atagagcttaaagc-ata----ttttt---cttgaggacatctgtaga-attaccaaaggg-ctaaacta Chimp atagagcttaaagc-ata----ttttt---cttgaggacatctgtaga-attaccaaaggg-ctaaacta Bonobo atagagcttaaagc-ata----ttttt---cttgaggacatctgtaga-attaccaaaggg-ctaaacta Gorilla atagagcttaaagc-ata----ttttt---cttgaggacatctgtaga-attaccaaaggg-ctaaacta Rhesus atagtgcttaaagc-ata----ttttt---cctgaggacacctgtaga-attaccaagggg-ctaaacta Marmoset ataggatttaaagc-ata----ttttt---cctgaggacacctggaga-attaccaaaggg-ctaaacta Tarsier atagagcttagaac-ata----ttttc---ccaaaagacaactgtaaa-attaccataggg-ctgaactg Bushbaby ataaggcttagagc-ata----tttttttcccagatgacacctgtaaa-attaccaaaagg-ctgaacta Tree shrew ----------------------tttcc---ccagaagacacctgtaaa-attaccaaaggg-atgaaata Malayan flying lemur ataggtcttagagc-ata----ttttt---ccagaagacacctgtaaa-attaccaaaggg-ctgaactg Pig ataggacttaga-c-acaatc-ctttc---tcaaaagacacctgtaaattttaccaaagtatataaattg Dolphin atagggtttagagc-ataatc-ctttg---tcagaatatacctgtaaa-attaccagaggggctgacttg Cow ataggacttagagc-ataatc-ctttg---tcagaatatacctgtaaa-attacca-------------- Sheep ataggacttagagc-ataatc-ctttg---tcagaatatacctgtaaa-attacca-------------- Horse gtaggacttacagc-ataatc-ttttc---ccagaagacacctgtaaa-attaccaaaagggctgaattg Chinese pangolin ataggatttcaagc-ataatc-ttttt---ccagaagacatctgtaaa-attaccaaaggggctgaattg Dog ataggaattagagc-ataatc-ttttc---ccagaagacacctgtaaa-attaccaaagggactgaattg Hawaiian monk seal ctaggaattagagc-ataatc-ttttc---ccagaagacacctgtaaa-attaccaaagggactgaattg Hedgehog atagaactcagagc-ataatc-ttctc---ccaggggacacctgtaaa-ttaacaaagggg--tgattga Shrew acagtacacatggc-ata--c-ttttc---cca-gacacacctgtaaa-attaccaagggggctgaatta Elephant ac----ctttgaac-atg----ttttc---ttggaagacatcggtaca-attactaaagggggtgaattg Tenrec atagggcttagcgc-atactattttcc---caagaagacatctgtaga-attaccgaagtgggtgaattg Zebrafish ====================================================================== X. tropicalis ====================================================================== Opossum ====================================================================== Chicken ====================================================================== Mouse -gaacc---------------tgagcac------tgatactattggccaccatgatctagactttctatt Rat -gaggc---------------tgagccc------tgatactgttggttatcatgatctagactttctat- GCF_003668045 -gcaac---------------tgagtac------tgagtctatgggctaccatgatctagagttcctatt Beaver -gcaac---------------tgattat------tgatgttattgattaccataatctagaatctctatt Squirrel -gcaac---------------taattat------ggatcctattgattactgtaatctacagttttta-- Guinea pig -ccagc---------------cgattat------caaaactattgattaatacaatggagagtttctgtt Rabbit -gcaac---------------tgattat------agattctgttcattaccataatctagagttt-tctt Pika -gcaac---------------caattat------agatcctattgtttagcataatgtagagtttctatt Human tgcaac---------------tgagtat------agatactattgattaccataatctagagtttctatt Chimp tgcaac---------------tgagtat------agatactattgattaccataatctagagtttctatt Bonobo tgcaat---------------tgagtat------agatactattgattaccataatctagagtttctatt Gorilla tgcaac---------------tgagtat------agatactattgattaccataatctagagtttctatt Rhesus cacaac---------------tgagtat------agatactattgattaccataacctagagtttctatt Marmoset tgcaac---------------taagtat------agatactattgattaccataatctagagtttctatt Tarsier -gcaac---------------tgattat------agatactattgattactgtaatctagggtttctatt Bushbaby ----at---------------tgattac------agatactattgattactataatctagagtttctatt Tree shrew -gcaac---------------tgattat------agataccgttgattatcataatctggactttctatt Malayan flying lemur -gcatc---------------tgattgt------agagattattgattactttaatctagaatttctatt Pig -acaac---------------tgatcat------aggttctattgattatcataacctagagtttctatt Dolphin -acaac---------------tgatcat------aggttctattgattactgtaatctagagtttctatt Cow -acaat---------------tgatcat------aggttttattgattactgtaatctagagtttctgtt Sheep -acaat---------------tgatcat------agattctattgattactatagtctagagtttctgtt Horse -acaac---------------tgattat------aggtactattgattactgtaatttagagtttctact Chinese pangolin -ataat---------------tgattgt------aggtactattgattaccgtaaactagagtttctatt Dog -acaac---------------tgattgt------aggtactagtgattaccgtaatctagagattctatt Hawaiian monk seal -acaag---------------tgattgt------aggtac--gtgattaccgtaatctagagtttctatt Hedgehog ---------------------tgattcc------aggtcctactgattactgtaatctagagtttttact Shrew -aaaac---------------tgattgc------aggtacgattgattactgtaatctagagttcctatt Elephant -acaac---------------tgagtac------aggtacaattaatgacagtaatcgagagtttgtatt Tenrec -acaactgttatgggtaaaattgattactgtaataggtacaattgattactgtcatctagagttcctatt Zebrafish ====================================================================== X. tropicalis ====================================================================== Opossum ====================================================================== Chicken ====================================================================== Mouse ctcaa--taaac------------------------tgc----------aaagatgccc---------ga Rat -tcaa--taact------------------------tgc----------aaacaggtcc---------aa GCF_003668045 ttcaggtcagac------------------------ttc----------aaagatgact---------ga Beaver ttcagcttaaac------------------------tgc------aaagaaagatgcct---------ga Squirrel ---ag--ttaca------------------------tgg----------aaagat--------------- Guinea pig ttcaccttaaac------------------------tgatttaagacagaaagacacct---------ga Rabbit tgcaacttcaac-------------------------gt------aaagaacgatgtgc---------ca Pika tgcagcttcaac------------------------tgt------aaagaaagatgccc---------ca Human ttcagcttaaac------------------------tgt------aaagacagatgtcc--------tga Chimp ttcagcttaaac------------------------tgt------aaagacagatgtcc--------tga Bonobo ttcagcttaaac------------------------tgt------aaagacagatgtcc--------tga Gorilla ttcagcttaaac------------------------tgt------aaagacagatgtcc--------tga Rhesus ttcagcttaaac------------------------tgt------agagacagatgccc--------tga Marmoset ttcagctt-aac------------------------tgt------aaagacagatgccc--------tga Tarsier ttcagcttaagc------------------------tgc------aaagaaa----------------ga Bushbaby tttcacttaaat------------------------cgc------aaagaaagatgtctgactcgtagga Tree shrew tttagacc-aac------------------------tac----------ataaatgtcc---------aa Malayan flying lemur tttagcttaaac------------------------tgc------aaagaaagatgccc---------aa Pig gtcagcttaaac------------------------tgc------aaagaaagattccc---------aa Dolphin ttcagcttaaac------------------------tgc------aaagaaagatgccc---------aa Cow ttcagcttaaac------------------------tgc------aaagaaagttgccc---------ga Sheep ttcagcttaaac------------------------tgc------aaagaaagttgccc---------aa Horse ttcagcttaaac------------------------tgc------aaagaaagatgtct---------gc Chinese pangolin ttcagcttaaac------------------------tgc------aaagaaagatgcct---------ga Dog ttcagcttaaac------------------------gca------aaaaaaggatgact---------ga Hawaiian monk seal ttcagtttaaactgcaaaaaaaaaaaaaaaaaaaaagaa------aaagaaagatgcct---------ga Hedgehog atcagctgaaac------------------------tgt------aaaaaaagatgcct---------ga Shrew tttagcttaaac------------------------tgt------aaagaaagatgtcc---------ga Elephant ct-agcttaaac------------------------tgc------agataaagatgcct---------aa Tenrec ttcaacttaaac------------------------tgc------agagaaagatcctt---------gg Zebrafish ====================================================================== X. tropicalis ====================================================================== Opossum ====================================================================== Chicken ====================================================================== Mouse ttgcc-aggaatcagaactgcatgcacatttcagccat-----atgtgtac---ctacttaaca-tgt-t Rat tccct-aggaattagaaatgcatgcatagttcagtcat-----acatgtac---ctcctattcactgtgt GCF_003668045 tcacc-aggaattagaactgtgtgcacatttcagtcat-----acccgtac---ctattcactg-tgt-t Beaver ttcat-aataattagaact--------atcttcgatat-----gcataagc---ttt--------tgttt Squirrel -------agaaagaggactgtg---------caactat-----atacatat---cttttg-----ttt-t Guinea pig ttctt-actagttagaattgtatgcacattttagctatgtacagtatatac---ctatattttg-ttt-t Rabbit ttcct-agtcattataactgtgtgcaca-tacagccac-----atgcatgcaatcttttg-----ttt-t Pika ttcct-ggtaattac-actgtgtgcacatttcagcaac-----atgcacaaaa-catcta-----ttt-g Human ttcct-agtaattaaaactgtatgcacatttcagctat-----gcatatac---ctatcttttg-tct-t Chimp ttcct-agtaattaaaactgtatgcacatttcagctat-----gcatatac---ctatcttttg-tct-t Bonobo ttcct-agtaattaaaactgtatgcacatttcagctat-----gcatatac---ctatcttttg-tct-t Gorilla ttcct-agtaattaaaactgtatgcacatttcagctat-----gcatatac---ctatcttttg-tct-t Rhesus ttcct-actaattaaaactgtatgcacatttcagctat-----gcatatag---atatcttttg-tct-t Marmoset ttcct-agtaattaaaacggtatgcacatttcagctat-----gcgtatac---ctatcttttg-tct-t Tarsier ttccc-agtaattaccatcatatgcacatttcagctat-----aaacacac---ctatcttttg-ttt-c Bushbaby gtccc-agtaattggaactgcgcacacatttctgctat-----acacacac---ctatcttttg-ttt-t Tree shrew ttcct-gctaattagaactctatgtacatttcagctat-----acagacac---ctatcttttg-tat-t Malayan flying lemur ttcct-agtaagtagaactgcatgcacatttcaggtat-----ctacacac---ctatcttttg-ttt-t Pig ttgct-agtaataataaccttataca--------------------cacat---ctatc--ttg-ttt-t Dolphin ttgct-agtaattagaaccttatgca--------------------cacat---ctatc--ttg-ttt-t Cow ttgct-agtaattagaaccttatgca--------------------cacat---ctatc--ttg-ttt-t Sheep ttgct-agtaattagaaccttatgca--------------------cacat---ctatc--ttg-ttt-t Horse ttgct-agtaattagaaccttatgcacatttcagctat-----acacacac---ctatcttttg-ttc-t Chinese pangolin acgct-agtaattagaaccttatgcacatttcagctat-----acgcacac---ctatcttttg-ttt-t Dog tcact-agtaattagaaccttatgcacatttcagctat-----agacatac---ctatcttttg-ttt-t Hawaiian monk seal tcgct-agtaattagaagcttatgtacatttcagctgt-----atacacac---ctatcttttg-ttt-t Hedgehog ct----------------ttcatgcacatttcagctat-----atgcacac-----agctcttg-ttt-t Shrew ttgct-agtaattagaaccttatgctcatttcagctat-----gcacatac---ctaccttttc-ttt-t Elephant ttcct-ggtaattataac---------atttcagccat-----acaca-tt---ttatctttgg-ttt-g Tenrec ttcctgggggatcaggac---------atttcagttat-----atacactc---ttatctttgg-tgt-g Zebrafish ====================================================================== X. tropicalis ====================================================================== Opossum ====================================================================== Chicken ====================================================================== Mouse tg-aaaat-t-agttttgaatgtctgaa-ttta---tctta Rat tg-aaaat-t-agttgtgaatgcccaaa-ttta---tctta GCF_003668045 tg-aaaat-t-agtttagaatatccaaa-ttca---tcttg Beaver tt-gaaat-t-agtttagaatattcaaa-tctg---tcttg Squirrel aa-aaaat-t-agtttagaatattaaaattttc---tctta Guinea pig tg-aaaat-t-agtttagaacactccta-tttgtgttctta Rabbit tg-aaaaa-t--gtctagaatattcaaa-tgtc---t-taa Pika tg-aaaat-ttagtttagaatattcaaa-tgtc---t---- Human tg-aaaat-tcagtgtagaatattctaa-cttg---tctta Chimp tg-aaaat-tcagtgtagaatattctaa-cttg---tctta Bonobo tg-aaaat-tcagtgtagaatattctaa-cttg---tctta Gorilla tg-aaaat-tcagtttagaatattctaa-cttg---tctta Rhesus tg-aaaat-tcagtttagaatattccaa-cttg---tctta Marmoset tg-aaaat-ttagtttagaatattcaac-cttg---tctta Tarsier ag-gaaaa-ttagcttaaaatattcaaa-cttg---tctta Bushbaby tg-aaaaa-ttagtttacaacattcaaa-cttg---tctta Tree shrew tg-aaaaa-ttagtttagaatattcaaa-cttg---aatta Malayan flying lemur tg--aaaa-ttagtttagaatattgaaa-cttg---tctta Pig ta-aaaca-ttagcttagaatattcaaa-ctta---cctta Dolphin ta-aaaca-ttagtttagaatattcaaa-c-------tgta Cow ta-aaaca------ttagaatattcaaa-cttg---ttgta Sheep ta-aaaca------ttagaatattcaaa-cttg---ttgta Horse ta-aaatatctagtttagaatattcaaa-cttg---tctta Chinese pangolin ta-aaatg-ctagtttagaatattcaaa-cttg---tctta Dog tt-aaata-ctaatttagaatattcaaa-cttg---tctta Hawaiian monk seal ttaaaata-ctaatatagaatattcaag-cttg---tctta Hedgehog ta-aaaca-ctagtttagcatattcaaa-cgtg---cttta Shrew tg-aaa----------------------------------- Elephant tg-aaaca-ttagttcagaatattcaaa-cttg---tctta Tenrec tg-aaaca-tt-----gaaatattcaaa-ctta---tctta Zebrafish ========================================= X. tropicalis ========================================= Opossum ========================================= Chicken ========================================= Inserts between block 27 and 28 in window B D Hedgehog 86bp Alignment block 28 of 407 in window, 56749534 - 56749538, 5 bps B D Mouse cacat---- B D Rat cacat---- GCF_003668045 cacat---- Beaver tacat---- B D Squirrel cacat---- B D Guinea pig tgcat---- B D Rabbit tacat---- B D Pika tacat---- B D Human catat---- B D Chimp catat---- B D Bonobo catat---- B D Gorilla catat---- B D Rhesus catat---- B D Marmoset catat---- B D Tarsier cacat---- B D Bushbaby gatgt---- B D Tree shrew tacat---- B D Malayan flying lemur cacat---- B D Pig cac------ B D Dolphin cac------ B D Cow cac------ B D Sheep cac------ B D Horse cac------ B D Chinese pangolin cac------ B D Dog ctg------ B D Hawaiian monk seal ctg------ B D Elephant aacgttaat B D Tenrec aacactaat B D Hedgehog ========= B D Zebrafish ========= B D X. tropicalis ========= B D Opossum ========= B D Chicken ========= B D Shrew --------- Inserts between block 28 and 29 in window B D Guinea pig 171bp B D Rabbit 4bp B D Pika 4bp B D Pig 1bp B D Dolphin 1bp B D Cow 1bp B D Sheep 1bp B D Horse 1bp B D Chinese pangolin 1bp B D Dog 1bp B D Hawaiian monk seal 1bp Alignment block 29 of 407 in window, 56749539 - 56749539, 1 bps B D Mouse -a B D Rat -t GCF_003668045 -t Beaver -t B D Squirrel -t B D Human -t B D Chimp -t B D Bonobo -t B D Gorilla -t B D Rhesus -t B D Marmoset -t B D Tarsier -g B D Bushbaby -t B D Tree shrew -t B D Malayan flying lemur -t B D Elephant a- B D Tenrec a- B D Guinea pig == B D Sheep == B D Hawaiian monk seal == B D Dog == B D Horse == B D Hedgehog == B D Pika == B D Zebrafish == B D X. tropicalis == B D Cow == B D Opossum == B D Chicken == B D Shrew -- B D Pig == B D Rabbit == B D Chinese pangolin == B D Dolphin == Inserts between block 29 and 30 in window B D Human 4bp B D Chimp 4bp B D Bonobo 4bp B D Gorilla 4bp B D Rhesus 4bp B D Marmoset 4bp B D Tarsier 4bp B D Bushbaby 4bp B D Tree shrew 95bp B D Malayan flying lemur 4bp Alignment block 30 of 407 in window, 56749540 - 56749575, 36 bps B D Mouse tg-------agccttg--------tagctcata-----------------------tgggactcccgttc B D Rat aa-------tgtattg--------taactcata-----------------------tgggactcccgttc GCF_003668045 ca-------agc--tg--------taattcata-----------------------ttggaatcccattc Beaver aa------ttgcacta--------tagttgatatttttaacaatattattttaatgttttaatgcctttc B D Squirrel aac----actacaccc--------taattgaca-----------------------t---attattattc B D Rabbit -------atcacactg--------tatttaatatt---------------------ttataataccattc B D Pika -------ataacactt--------taattggtatt---------------------ttatagtaccataa B D Human --------ttacattg--------taattaatatt---------------------ttgcagtgccattc B D Chimp --------ttacattg--------taattaatatt---------------------ttgcagtgccattc B D Bonobo --------ttacattg--------taattaatatt---------------------ttgcagtgccattc B D Gorilla --------ttacattg--------taattaatatt---------------------ttgcagtgccattc B D Rhesus --------ttacattg--------taattaacatt---------------------ttgcagtgccattc B D Marmoset --------ttacattg--------taattaatatt---------------------ttgcactgccattc B D Tarsier --------ttatggtgtattacaataattaatatt---------------------ttactgtgccaatc B D Bushbaby --------tcacattgtaat----taattaatatt---------------------ttatagtgccaggc B D Malayan flying lemur --------ttacactg--------tagttaatatt---------------------ttacagtgccattc B D Pig --ttaatattacactg--------taactgatacg---------------------ttatagtgccattc B D Dolphin --ttaatattacactg--------caattgatatt---------------------ttatattgccattc B D Cow --ttactgttatactg--------caattgatatt---------------------ttatagtgccattc B D Sheep --ttactgttatatta--------caattgatatt---------------------ttatattgccattc B D Horse --ttaatgttacactg--------caatcaatgtt---------------------atatggtgccttcg B D Chinese pangolin --ttaatattacactg--------ccaaggatatt---------------------ttatagtgccatgc B D Dog --ttaatattacattg--------aagtcaacatt---------------------tcacattgccatgc B D Hawaiian monk seal --ttaatactacattg--------aagtcaatatt---------------------ttatattaccattc B D Elephant --------ttacagag--------taactgatatt---------------------ttatagtgccattc B D Tenrec --------ttgcactg--------tagttaatatt---------------------ttatagtgccattc B D Guinea pig ====================================================================== B D Tree shrew ====================================================================== B D Hedgehog ====================================================================== B D Zebrafish ====================================================================== B D X. tropicalis ====================================================================== B D Opossum ====================================================================== B D Chicken ====================================================================== B D Shrew ---------------------------------------------------------------------- Mouse agaa Rat agaa GCF_003668045 agaa Beaver agaa Squirrel agaa Rabbit agaa Pika ataa Human agaa Chimp agaa Bonobo agaa Gorilla agaa Rhesus agaa Marmoset agaa Tarsier ggaa Bushbaby agaa Malayan flying lemur agaa Pig agaa Dolphin tgaa Cow agaa Sheep agaa Horse ggag Chinese pangolin agag Dog agaa Hawaiian monk seal agaa Elephant agaa Tenrec tgaa Guinea pig ==== Tree shrew ==== Hedgehog ==== Zebrafish ==== X. tropicalis ==== Opossum ==== Chicken ==== Shrew ---- Alignment block 31 of 407 in window, 56749576 - 56749657, 82 bps B D Mouse ctcgttgttgact-----------------aggag---------agaatatttctt----tatct---tg B D Rat ctctttgttaact-----------------aggat---------agaatatttatt----tatct---ta GCF_003668045 gtctttgttgact-----------------aggat---------agaatatttatt----tatct---ta Beaver gtctttattgtccaattcta----------agaac---------agaatactcatt----tattt---ta B D Squirrel gactttattgagtatctctg----------aagat---------agaatatttact----tcttt---ta B D Guinea pig gcccttatggtgtatctctg----------aagat---------agaatatttatt----tattt---ta B D Rabbit gtccttattgtccatctctg----------agaac---------agaatatttattttagttttt---ta B D Pika gtccttgttgtctatctctg-----------gaac---------agaatatttagtgt--ttttt---tt B D Human gtccttattgtc----tctg----------aggat---------agaatattta--------ttt---tg B D Chimp gtccttattgtc----tctg----------aggat---------agaatgttta--------ttt---tg B D Bonobo gtccttattgtc----tctg----------aggat---------agaatgttta--------ttt---tg B D Gorilla gtccttattgtc----tctg----------aggat---------agaatattta--------ttt---tg B D Rhesus gtccttattgtc----tctg----------aggat---------agaatattta--------ttt---tg B D Marmoset gtccttattgtc----tctg----------aggat---------agaatattta--------ttt---tg B D Tarsier gtctttattgtctatatctg----------aggac---------aggatatttatt----tgttt---tg B D Bushbaby gtccttattgtctatctctg----------cagat---------agaatatttatt----tattt---tg B D Malayan flying lemur gtccttattgtctgtctctg----------aggat---------agagtattgatt----tattt---tg B D Pig gtccttattgtctacctctg----------aggatggaagaaaaagaatatttatt----tatttaggtt B D Dolphin gtcc-tattgtctatcttta----------aggataggagaaaaaggatatttagt----t-------tg B D Cow atccttattgtctatcttt----------------------aaaaggatatttatt----t-------tt B D Sheep atccttattgtctatctttg----------aggatagaagaaaaaggatatttatt----t-------tt B D Horse tt-cttattgtctacctctg----------aggttagaagaaaaagaatacttatt----tattt---tg B D Chinese pangolin gt-cctattgtctacctctg----------gggatagaagaaaaagagtacatatt----tattt---tg B D Dog gtccttattgtctaccgttg----------aggatagaagaagaggaatacttatt----tgttt---tg B D Hawaiian monk seal gtacttattatctacccttt----------gggatagaagaagaagaagatttatt----tg-tt---tg B D Shrew -----tactgact-------------------------------------------------------ta B D Elephant atccatattgtctacttctgaggataaaaaaggatagaggaaagataatatttatt--------t---tg B D Tenrec ttccatattaccacctttgg-----------ggagagaggaaa-ataatatttact--------t---tg B D Tree shrew ====================================================================== B D Hedgehog ====================================================================== B D Zebrafish ====================================================================== B D X. tropicalis ====================================================================== B D Opossum ====================================================================== B D Chicken ====================================================================== Mouse ga----tt-at-tc---aac-----cacatttgtaagt-aaggaagtacactgagaaaag Rat ga----ct-tt-tc---aac-----tacatttgtaagt-aagg---------------ag GCF_003668045 ga--tttt-tt-tc---aac-----cacacttactatt-gggc---------------ag Beaver gc--cttt-ct-tc---acc-----tgtatttaatatt-gggc---------------aa Squirrel gc----tt-tt-cc---acc-----tacatttaatatt-gagc---------------tg Guinea pig gcttttct-tt-tc---act-----tccttttaatatt-ggac---------------ta Rabbit aa---------------atc-----tacatctaatatt-ggac---------------ta Pika aa---------------gcc-----ctcatgtaatatc-ggac---------------ta Human gc--tttt-tt-at---acc-----cacagttaatattggggc---------------ta Chimp gc--tttt-tt-at---acc-----cacagttaatattggggc---------------ta Bonobo gc--tttt-tt-at---acc-----cacagttaatattggggc---------------ta Gorilla gc--tttt-tc-at---acc-----cacagttaatattggggc---------------ta Rhesus gc--tttt-tt-aa---acc-----cacagttagtatgggggc---------------ta Marmoset gc--tttt-ta-aa---acc-----cacagttaatattgaggc---------------ta Tarsier gc--tttt-tt--c---act-----cactttttctatt-aggc---------------ta Bushbaby gc--tttt-tt--c---acc-----tacatttcatatt-gggc---------------ta Malayan flying lemur gc--tttt-ttttc---acc-----tacttttaatatt-gggc---------------ta Pig tt--tttt-tt--taaaacc-----caca-ttaatatt-gggc---------------ta Dolphin gc--tttt-tt--c---acc-----cacatttaatatt-gggc---------------ta Cow ac--tttt-tt--c---acc-----tacatttaatgtt-gggc---------------tc Sheep ac--tttt-tt--c---act-----tacatttaatgtt-gggc---------------tt Horse gc-ttttt-tt--c---tcc-----cgcatttaatatt-gggc---------------ta Chinese pangolin gc--tttt-tt--c---acc-----tacatttaatatg-tggc---------------ta Dog gc--tttt-tt--c---acc-----tgcatttaatatt-gggc---------------ta Hawaiian monk seal gc--tttt-tt--c---acc-----tgcatttaatatt-gggc---------------ca Shrew aa--atat-tc--c---actgattatacaattaacatt-acac---------------ag Elephant ac--tttt-tctcc---tct-----cacatttaatttt-gggc---------------ta Tenrec gc--ttttcttttt---tcc-----cacatttaatatt-gggc---------------ta Tree shrew ============================================================ Hedgehog ============================================================ Zebrafish ============================================================ X. tropicalis ============================================================ Opossum ============================================================ Chicken ============================================================ Inserts between block 31 and 32 in window B D Pig 1bp B D Dolphin 1bp B D Cow 1bp B D Sheep 1bp B D Horse 1bp B D Chinese pangolin 1bp B D Dog 22bp B D Hawaiian monk seal 1bp B D Shrew 1bp Alignment block 32 of 407 in window, 56749658 - 56749704, 47 bps B D Mouse g----aaatccttagcc-----tcg-----------tctgactgtgaa-ggaaacgttg---tctacttg B D Rat g----aaatccttactc-----tca-----------tcttactgcgaagggaaacaatg---tttacttg GCF_003668045 g----aaatccttactc-----tca-----------tctacttgtgaaaggaaacaatg---ttttctat Beaver g----aaatccttaat--------a-----------tctcattctgaatggcagcaatg---ttctctgg B D Squirrel g----acat-tttaatc-----tca-----------gccaattctgaatggcaacaatg---ttccctgg B D Guinea pig g----aagtctttagat-----ttagtaaactattttctaattgtgaatgggcacagtt---ttgtctgg B D Rabbit c----aagttcttaata-----cca-----------tctaattctgaatggcaacaatg---ttctctgg B D Pika g----aaatctttaata-----cca-----------actaattctgaatgacaccaatg---ttttctgg B D Human g----aagtacttaatt-----cca-----------tttacttctgaatggcaacaatg---ttctctgc B D Chimp g----aagtacttaatt-----cca-----------tttacttctgaatggcaacaatg---ttctctgc B D Bonobo g----aagtacttaatt-----cca-----------tttacttctgaatggcaacaatg---ttctctgc B D Gorilla g----aagtacttaatt-----cca-----------tttacttctgaatggcaacaatg---ttctctgc B D Rhesus g----aagtacttaatc-----cca-----------tttgcttctgaatggcaacaatg---ttctctgg B D Marmoset a----aagtccttaatc-----tca-----------tttacttctgaatggcaacaatg---ttctctgg B D Tarsier g----aaatccctaatc-----tta-----------cttaattctgaat-gcaacaatg---ttctctga B D Bushbaby g----aaatccttaatctaaaatca-----------tttaattcttaatggcaacagtg---ttccctcg B D Tree shrew g----caatccttaatc-----tca-----------tcactttttgaatg---acagtg---ctctctgg B D Malayan flying lemur g----aaatccttaatc-----tca-----------tttaattctgaatggcaacaatg---ttctct-g B D Pig -----aattctttaatc-----tca-----------tctaaccctgaatatcaacaaagctgttctcttg B D Dolphin -----aactctttaatc-----tca-----------tctaactctgaatgacaataatg---ttctctgg B D Cow -----aactctttaatc-----tca-----------tctaactctcaatgacaataatgt--ttctctgg B D Sheep -----aactctttaatc-----tca-----------tttaactctcagtgacaataatgt--ttctctgg B D Horse -----aactctttaatc-----tct-----------tctgtttt-gaatggtaacagtg---ctccctgg B D Chinese pangolin -----aaatctttactc-----tca-----------tctaattc-tgatggcaacaatg---ctctctgg B D Dog aaaaaaaatccttaaac-----tca-----------tctaattctgaatggcaaaca-----ttctctgt B D Hawaiian monk seal -----aaatccttaatc-----tca-----------tctaattctgaatggcaaccatg---ttctcttg B D Shrew -----aatttat---------------------------------------------------------- B D Elephant g----aaatctttcatc-----tca-----------gctaattctgaatgacagcaatg---ttctctgg B D Tenrec g----aaatcattaatc-----tca-----------tctaattctgaatgacaacaatg---ttctctgg B D Hedgehog ====================================================================== B D Zebrafish ====================================================================== B D X. tropicalis ====================================================================== B D Opossum ====================================================================== B D Chicken ====================================================================== Mouse t Rat t GCF_003668045 t Beaver t Squirrel t Guinea pig c Rabbit c Pika c Human t Chimp t Bonobo t Gorilla t Rhesus t Marmoset t Tarsier t Bushbaby t Tree shrew t Malayan flying lemur t Pig t Dolphin t Cow g Sheep a Horse t Chinese pangolin t Dog t Hawaiian monk seal t Shrew - Elephant c Tenrec t Hedgehog = Zebrafish = X. tropicalis = Opossum = Chicken = Inserts between block 32 and 33 in window B D Pig 151bp B D Dolphin 15bp B D Cow 15bp B D Sheep 15bp B D Horse 15bp B D Chinese pangolin 15bp B D Dog 14bp B D Hawaiian monk seal 14bp Alignment block 33 of 407 in window, 56749705 - 56749857, 153 bps B D Mouse tct----------ttct-atgt-agtcaaatgaaagcacaaaaa-tc-tgacttaaagtgatc-aagtgg B D Rat tct----------ttct-attt-agtcaaatgaaagcacaaaaa-tt-tgacttgatgtgatc-aagtgg GCF_003668045 tga----------tttt-cttc-tgt----tgaaggcaaaaaaa-tcttgacttaatgttatc-aagtga Beaver ttctaatggctggtttt-cttc-tgt----tgaaagcataaaac-ct-ctatggaatgcaatc-aaatgg B D Squirrel cct-aatgtctgattct-gttc-tgt----taaaagcataaaac-tg-ctattgaatataatc-aaatgg B D Guinea pig tcc----------tgatggttg-tgt----tgaaagcataaaac-ct-ctattgagtaccaac-aaatag B D Rabbit tcctaacagctggtttt-cttcttgt----gggaagcataatgc-tg-ctgttgaatacaaga-gaatgg B D Pika tcctaa-agctggtttt-cttc-tgt----ggaaagtggagtat-tg-ctgttgaatacaata-gaatgg B D Human tcctgatggccggttct-cttc-tgt----tgaaagcataaaac-tc-caatggaataaaatt-gagtgg B D Chimp tcctgatggccggttct-cttc-tgt----tgaaagcataaaac-tc-caatggaataaaatt-gaatgg B D Bonobo tcctgatggccggttct-cttc-tgt----tgaaagcataaaac-tc-caatggaataaaatt-gaatgg B D Gorilla tcctgatggccggttct-cttc-tgt----tgaaagcataaaac-tc-caatggaataaaatt-gaatgg B D Rhesus tccttatggctggttct-tttc-tgt----tgaaagcataaaac-tc-caatagaatacaattggaatgg B D Marmoset tgctgatggtgggttct-cttc-tgt----tgaaagcataaaac-tc-caatggaatacaattggaatgg B D Tarsier ttcaaatgactggttct-tttc-tgt----tgacagcataaaac-ct-ctattgaatataattgaaatgg B D Bushbaby ttgtaatggttggttct-attc-tgt----tgaaagcataaaat-ct-ctattaaatacaatg-gaatgg B D Tree shrew ttgtaatggctggctct-ctgc-tgt----tgaaagcataaaaatct-atattgaatacaatc-aaatgg B D Malayan flying lemur tcctagtggctagttct-cttc-tgt----tgaaaggataaaaa-ct-ctaatgaaaacaatt-aaatgg B D Pig ---------------tc-tctc-tat---------atatacaca-ta-catatacatgtatat-atatgg B D Dolphin ---------------ct-tttc-tgt----ggaaaatgtaaaac-ct-ctcttgaatgcaact-gcatgg B D Cow ---------------ct-ttta-agt----tgaaaatataaaa--ct-ctcttgaatgcaact-gcatgg B D Sheep ---------------ct-tttc-tgt----tggaaatataaaa--ct-ctcttgaatgcaact-gcatgg B D Horse ---------------gt-cttc-tgc----tgaaagcattaaac-ct-ctattgaatgcaatt-gcatgg B D Chinese pangolin ---------------ct-cttc-tgt----tgaaagcataaatc-ct-tgactgaatgcaatt-gcatgg B D Dog ---------------ct-cttc-tgt----tgaaagcataaaac-ct-ctactgaatgcaatt-gcatgg B D Hawaiian monk seal ---------------ct-cttc-tgt----tgaaaac--aaaat-ct-ctactgaatgcaatt-gcatgg B D Shrew ---------------------------------------------------------------------- B D Elephant tcttagtggctggttcc-cttc-tgt----tgaaagcctaaaac-cc-ctat-gaacacaatt-gcacag B D Tenrec tcttaat------ttat-cttc-tgt----tgaatgtctaaaag-tc-ctat-gaacataacc-acatag B D Hedgehog ====================================================================== B D Zebrafish ====================================================================== B D X. tropicalis ====================================================================== B D Opossum ====================================================================== B D Chicken ====================================================================== Mouse ata-----------------aaa--------------gt-g----aga--------tggacagc-c---- Rat ata-----------------aaa--------------at-g----aaa--------tgg----------- GCF_003668045 aaa-----------------aaa--------------ac-a----tgat-------tagataaa-c---- Beaver aaa-----------------aaa--------------ag-a----acat---caaatagagaaa-c---- Squirrel --c-----------------aaa--------------ag-a----acat---taaagagacaaa-c---- Guinea pig --c-----------------aaa--------------ag-c----acattt-tacatagagaaa-c---- Rabbit --c-----------------aaa--------------ag-g----atatta-----tagaaaga-a---- Pika --c-----------------aaa--------------ag-a----acattc-----tatgaaga-a---- Human --c-----------------caa--------------aa-a----acct---tatatagagaat-c---- Chimp --c-----------------caa--------------aa-a----acct---tatatagagaat-c---- Bonobo --c-----------------caa--------------aa-a----acct---tatatagagaat-c---- Gorilla --c-----------------caa--------------aa-a----acct---tatatagagaat-c---- Rhesus --t-----------------caa--------------aa-a----acct---catatagagaat-c---- Marmoset --c-----------------caa--------------aaca----acct---tatatagagaat-c---- Tarsier --c-----------------aaa--------------at-a----actt---tagatagagaat-c---- Bushbaby --a-----------------aaa--------------aa-a----acattg-tatacaggggat-c---- Tree shrew --c-----------------aag--------------a---------------ataaacagaaagc---- Malayan flying lemur --c-----------------aaa--------------ag-a----acattattataaagagaaa-c---- Pig --agagagatcgaaacagagatatcgagacaaagaaaga-gaggcagag------agagagaaa-c---- Dolphin --c-----------------aaaacaaaacaaaaacaaa-a----acat------acagagaaa-c---- Cow --c-------------aaaaaaaacccaacaacaaacaa-a----acat------acagagaaa-c---- Sheep --c--------aaaaaaaaaaaaacccaacaacaaacaa-a----acat------atagagaaa-c---- Horse --c-----------------aaa--------------aa-a----gcat------ataggaaaa-c---- Chinese pangolin --c-----------------aaa--------------aa-a----cccc------atggaggaa-c---- Dog --c-----------------aaa-----------------------------------gagaag-gcggc Hawaiian monk seal --c-----------------aaa-----------------------------------gaaaag-g---- Shrew ---------------------------------------------------------------------- Elephant --c-----------------aaa--------------ag-a----acat---tgtacagagaaa-t---- Tenrec --t-----------------aaa--------------ga-a----ccat---tgtatagagaaa-c---- Hedgehog ====================================================================== Zebrafish ====================================================================== X. tropicalis ====================================================================== Opossum ====================================================================== Chicken ====================================================================== Mouse -------------ataggtgttgagctatatc---tgttcttttccatgaaatttggtaaaatt-aataa Rat -------------ataggtgttgagctgtatc---tgttcttttacatggaatttggt-aaatt-agtaa GCF_003668045 -------------ataggtgttgggctatatc---tgt------------aatttgga-aagtt-aataa Beaver -------------atagaggttggaatatgtc---tgcccttttacg-------tagt-gaatc-aatac Squirrel -------------a-agaggttggactatata---tgcccttttacatggaacttgtc-gaatt-aatgc Guinea pig -------------atgggggttgggatacatc---tgtcctttcacatgggacttagt-gagtt-gatgc Rabbit -------------atgaaaattggaacatatc---tgtccttcaatgtgatactt-----aatt-agagc Pika -------------a-------tggaatgtatc---tgtcctttattgtagtatttaga-gaatt-aaaga Human -------------atagggactggaatacatt---tgcccttttaggaagtatttcat-gaatt-aatgc Chimp -------------acagggactggaatacatt---tgcccttttaggaagtatttcat-gaatt-aatgc Bonobo -------------acagggactggaatacatt---tgcccttttaggaagtatttcat-gaatt-aatgc Gorilla -------------atagggactggaatacatt---tgcccttttaggaagtatttcat-gaatt-aatgc Rhesus -------------acaggggctggaatacatt---tgtccttttaggaagtctttagt-gaatt-aatgc Marmoset -------------ataggggctggaatacatt---tgcccttttaggaagtatttagt-gaatt-aatgc Tarsier -------------atagggattggagtatttc---tgcccttttgcatggtacttaat-gaatcaaatgc Bushbaby -------------atggggtttggaatgtatc---tgcccttttacatggtgcttagt-gaact-aatgc Tree shrew -------------atgtagattggaatatatc---tgcccttttatgaggtgctt-----aatt-aatac Malayan flying lemur -------------atggggattggaatatatc---tgctcttttacatggtacttagt-gagtt-aatgc Pig -------------at-gaggttggaatatatc---tactcttttacatggtactgagt-aaatt-aatgc Dolphin -------------at-gaggttggaatagatc---tacccttatacgtggtacttagt-gaatt-aatgc Cow -------------at-gaggttggaatatatc---tacccttttatatggtacttagt-gaatt-attgc Sheep -------------gt-gaggttggactatatc---tacccttttatatagtacttagt-gaatt-actgc Horse -------------at-ggggtgggaatatatc---tacccttatatgtggtacttagt-gaatc-aatgc Chinese pangolin -------------at-gaggttgggatatatc---taccctt-tacattgtacctagt-gaatt-aatgc Dog atgtggtggtggtgg-aggattgaaatatatc---tacccttttacatggtacttagt-gaatt-aatgc Hawaiian monk seal -------------gg-gggattggaatatatc---tacccttttacatggtacttagt-gaatt-aatgc Shrew -------------------att---ttatatcaggaattcctttgtctgctccatttt-aagtt-aatac Elephant -------------cgaggggttggaatatatc---tgccctttaaaat---------------------g Tenrec -------------cga------ggaatatatc---tgcctttaaaaatattatttgaa-aaatt-gatag Hedgehog ====================================================================== Zebrafish ====================================================================== X. tropicalis ====================================================================== Opossum ====================================================================== Chicken ====================================================================== Mouse ttg-attttattcacccagttc------------------------------------------------ Rat ttg-atcttattcacacagttc------------------------------------------------ GCF_003668045 ttg-attttatttacacagttc------------------------------------------------ Beaver ctc-attttgttcaaacagttt------------------------------------------------ Squirrel ctt-gttttattcaaacagttt------------------------------------------------ Guinea pig ttc-attgtgttcaatcagttt------------------------------------------------ Rabbit cta-ttttttt--agacagttt------------------------------------------------ Pika ctt-attttttccaagtagttt------------------------------------------------ Human ctcaattttattcaaactatat------------------------------------------------ Chimp ctcaattttattcaaactatat------------------------------------------------ Bonobo ctcaattttattcaaactatat------------------------------------------------ Gorilla ctcaattttattcaaactatat------------------------------------------------ Rhesus ttcaattttattcaagctatgt------------------------------------------------ Marmoset ctc-attttattcaaactagat------------------------------------------------ Tarsier ttc-atttaattcaaaa-gttt------------------------------------------------ Bushbaby ctc-attttattcaaacagttg------------------------------------------------ Tree shrew ctt-actttattagaagaattc------------------------------------------------ Malayan flying lemur ccc-tttttattaaaacagttt------------------------------------------------ Pig ctc-a-tctgtttaaacagttt------------------------------------------------ Dolphin ctc-attct-----aacagttt------------------------------------------------ Cow ctc-attctttttaaagagttc------------------------------------------------ Sheep ctc-attctttttaaagagttc------------------------------------------------ Horse ctc-gttttatttaaacagttt------------------------------------------------ Chinese pangolin ttc-agtttatttaaagagttt------------------------------------------------ Dog ttc-attttatttaaacagtttataaatagttgtatttttaaaaatttttttattggagttcaatttgcc Hawaiian monk seal ttc-atttaatttaaaaagtct------------------------------------------------ Shrew t------------------ttc------------------------------------------------ Elephant cct-ccttttaaaaaacagtat------------------------------------------------ Tenrec ttt-cttttaaaaattctttcc------------------------------------------------ Hedgehog ====================================================================== Zebrafish ====================================================================== X. tropicalis ====================================================================== Opossum ====================================================================== Chicken ====================================================================== Mouse ---------------ata Rat ---------------ata GCF_003668045 ---------------ata Beaver ---------------ata Squirrel ---------------ata Guinea pig ---------------aca Rabbit ---------------ata Pika ---------------gta Human ---------------ata Chimp ---------------ata Bonobo ---------------ata Gorilla ---------------ata Rhesus ---------------ata Marmoset ---------------ata Tarsier ---------------ata Bushbaby ---------------aca Tree shrew ---------------atc Malayan flying lemur ---------------ata Pig ---------------atc Dolphin ---------------ata Cow ---------------ata Sheep ---------------ata Horse ---------------ata Chinese pangolin ---------------ata Dog aacatatagcataacata Hawaiian monk seal ---------------ata Shrew ---------------ata Elephant ---------------aaa Tenrec ---------------aaa Hedgehog ================== Zebrafish ================== X. tropicalis ================== Opossum ================== Chicken ================== Alignment block 34 of 407 in window, 56749858 - 56750053, 196 bps B D Mouse aataaatgcatagt--ttatgaaaagtttag--tctatattg-gcttgtttcctc-agaa-caa-acaca B D Rat aatacatgtatagt--ttatggaaagttgag--tctgcact--gtgcgttccctc-agaa-caa-acaca GCF_003668045 aataaatgcatagt--ttttgaaaagttatc--tccaaatag-gcatgtttcctc-agaa-caa-acata Beaver aataaatatgtatt--tcttgaaaacctttc--taca-ataa-gcatactttctc-agaa-aaa-aatta B D Squirrel agtaactatattgt--tc--------ttttc--tacaaatga-atatactttctc-agaa-aaa-at--- B D Guinea pig aataattatatggc--ccttgaaagcct----------attc-acatacttactc-caaa-aat-atgca B D Rabbit aataattgtgtagt--tctagaaacattttc--tactaacaggccctagtttctc-agaa-aac-a--ta B D Pika aacaatcttatagt--tttagcagaattttc--tacaaacagcacctactttctt-ggaa-aac-acgca B D Human aataattgtatagt--tcttgaaaaattttc--tacaaatgg-gcatactgtctc-aaga-aag-ataca B D Chimp aataattgtatagt--tcttgaaaaattttc--tacaaatgg-gcatactgtctc-aaga-aag-ataca B D Bonobo aataattgtatagt--tcttgaaaaattttc--tacaaatgg-gcatactgtctc-aaga-aag-ataca B D Gorilla aataattgtatagt--tcttgaaaaattttc--tacaaatgg-gcatactgtctc-aaga-aag-ataca B D Rhesus aataattgtatagt--tcttgaaaatttttc--tacaaatgg-gcatacttgctc-agga-aaa-ataca B D Marmoset aataattgtatagt--tcttgaaaatttttc--tacaaatga-gcatactttctc-agga-aaa-ataca B D Tarsier gataattgtataat----atggaaacatttc--tacaaatgg-gcaccttttctc-agaagaaa-acaca B D Bushbaby agtaattggatagt--tctggaaaatttatc--tacaattgg-gcatactttcta-aaaa-gat-atata B D Tree shrew attaattgtataga--ttttgaaaacttttc--tacaaatca-acatactttctc-agaa-tagaatatg B D Malayan flying lemur aataattgtataat--tctagaatatttttc--tacaaatgg-gcatactttctt-tgaa-aag-gtata B D Pig aatagttgtagagt--tctt-aaatttttttcctataattgg-gcatgctatttc---ag-aaa-aaaaa B D Dolphin aacagttgtatagt--tcttgaaattttctttgtataattgg-gcatgctttctc------aga-aaaaa B D Cow agcagttgtatagg--tgttgaaattttcttcgtattattag-gcacactttctcaagaa-aaa-aaaaa B D Sheep agcagttgtatagg--tgttgaaattttctttgtattgttag-gcatactttctcaaggg-aaa-aaaaa B D Horse aactgttggatagt--tcttgaaaaattttc--tacagttgg-gtatactttctc-ag-a-aaa-aaaat B D Chinese pangolin aatagttgtacgat--ttttgaaaacttttt--tgcaattag-gcatactttcac-agaa-aaa-aaaac B D Dog aatagttgtatagt--tcttgaaacattttc--tacaattgg-gcatattttctc-agaa-aaa-atata B D Hawaiian monk seal aatagttgtatagt--tcttg--acattttc--tacaattgg-gcatactttctc-agaa-aaa-atata B D Hedgehog agcatatgtatagt--tgttggaagtttttc--tacggctgc-acatagtttcct-aaag-aaa-ac-ta B D Shrew -----------att--ctttaaaaaattttc--tac-------------tttctt-aag---------ta B D Elephant --tagctgtgtatagttcttgaatggttttc--tacaattgg-gcatactttctc-agaa-aaa-atata B D Tenrec --tagttgtgtagg---cttgaaccattttc--tacaattgg-atttactttttc-tgga-aaa-a---a B D Zebrafish ====================================================================== B D X. tropicalis ====================================================================== B D Opossum ====================================================================== B D Chicken ====================================================================== Mouse taccgcttacctggtaggtagg----tt-----acaggaacatgaatggtagagt-tacaaat------t Rat tagggcttacctgtt-----gg----ct-----acagtaacatgaatatctgagt-tacaatt------t GCF_003668045 t--cacttacctgct----act----ct-----agagtaatatgaatgatggctt-tacaggt------t Beaver ca----ttgtctggt----act----ct-----caagtaatctgagtagtataat-tat--gt------t Squirrel tattgcttatctggt----cct----tt-----aaagtaatctgaatggtagatt-tacaagt------t Guinea pig c-----ttg--tagt----act----ct-----aaaa--------------------------------- Rabbit t--tgtaaatctggt----act--------------ctaatctggatgct--cat-tataatc------t Pika t--tataaatctggt----gttcaaatt-----aaactaatcctaatgct--gat-tataagc------t Human t--tgcatatctgat----act----ct-----aaagtaattggagtgacagatt-tataagc------t Chimp t--tgcatatctgat----act----ct-----aaagtaattggagtgacagatt-tataagc------t Bonobo t--tgcatatctgat----act----ct-----aaagtaattggagtgacagatt-tataagc------t Gorilla t--tgcatatctgat----act----ct-----aaagtaattggagtgacagatt-tataagc------t Rhesus t--tgaatatctgat----act----ct-----taagtaattggagacacagatt-tataagc------t Marmoset t--tgcatttctgat----act----c----------taattggagtgacagatt-tataagc------t Tarsier t--tgcatatctggc----att----ctaa-taaaagtaatttgagtgacagatt-tatatgc------t Bushbaby t--tatatagtgggt----act----ct-----aaagtaatctgactagcagatt-tataagc------t Tree shrew t--tgaatatattgt----act----ctag-ttaaa------tcaatg---------------------- Malayan flying lemur t--tgtgtacctggt----act----ctaa-ttaaagtactctcaatggtagagt-tataaac------t Pig t--tgcatctctggt----act----c-----taaagtaatctgaatggcagatt-tataaac------t Dolphin a--tgaatatctggt----act----ctaa-ttaaagtcatctgaatggtagatt-tataatc------t Cow a--agaatatctggt----act----cgga-ttcaggtaatctgaatggtggatt-tacaagc------t Sheep a--agaatatctggt----act----ctga-ttcaagtaatctgaatggtggatt-tataagc------t Horse g--tgcatatttggt----act----ctaa-ttaaagtgatctgaatggtagatt-tataagc------c Chinese pangolin t--tgcatatatggt----tcc----c-----tagggtaatctgaaaagtagatt-tataagc------t Dog t--tgcatatctggt----act----ctaa-ctgaagtaatctgaatgttagatt-tataagc------t Hawaiian monk seal t--tgcatatctggt----act----ctaa-ctgaaataatctgaatgttagatt-tacaagc------t Hedgehog c--tgcatatctggt----ac----------ttaaagtgagtcaaatggtagata-gataaacagacgat Shrew g--tgcatatctgct----act----ttaa-ttaaagtagcataaatggtagacc-tacaagc------t Elephant t--tgcatatatggt----act----tgaagcaaaagtaatctaaatgttagatt-tataagc------t Tenrec t--agtatatatgat----acc----ccaagtaaaagcaatttgaatgtttgattatcctcat------t Zebrafish ====================================================================== X. tropicalis ====================================================================== Opossum ====================================================================== Chicken ====================================================================== Mouse cccagtatcttcattttggggttgaat-atgttaatag-agacagcaaagttattataacat-tagttag Rat cccaatatcttcatttaggggttgaag-atgataatgg-agacagcaaatttattatagcat-tagttag GCF_003668045 cccaggactttcattttgaggttgaat-atgttaatgg-ag-caagaagtttaatatgacat-tctttag Beaver ttcagtgtcttcattttgggtttccat-atgttaact-----tagtaattttaatataaca----gttac Squirrel ttcagtttcttcattttggggttgcat-atgttaact-----cagtagctttaatataacac-caattac Guinea pig ------gtattcattttggatttgtat-attttaagt-----cagcaagtttcatat------tagttag Rabbit ttctgtatcttcattttggagttgtac-atgttaactc-taacagcaatttta-catgatgc-tagctgc Pika ttttgcatctttcttttggagttggat-gtggtgactc-tgataacaattttg-tataatat-tagcta- Human ttgggtatcttcattttggggttgcag-atattaatt-----tggcaagtttaatataacac-tagctac Chimp ttgggtatcttcattttggggttgcag-atattaatt-----tggcaagtttaatataacac-tagctac Bonobo ttgggtatcttcattttggggttgcag-atattaatt-----tggcaagtttaatataacac-tagctac Gorilla ttgggtatcttcattttggggttgcag-atattaatt-----tggcaagtttaatataacac-tagctac Rhesus ttgggtatcttcattttggggttgcag-atgttaact-----tggtaagtttaatataacac-tagctac Marmoset ttgggtatcttcattttggggttacag-atg-----t-----tgacaagtttaatataacac-tagctac Tarsier ----gtatcttcattttggaattgcaa-atattaactc-ggatggcaagtttaatatgacat-tagctat Bushbaby ttcagcatcttcatttgggggttgcat-atgttaactc-aggaagcaagtttaatgtgatat-tagctac Tree shrew ------------------------cat-atgttaactt-ggacagcatg-ttagta---tgt-tagttac Malayan flying lemur ttgaatattttcattttgtgtttacat-atgttaattc-agatagcaaatttaatatattat-tagctac Pig ttgagtgtcttcattttagggtggtgtaatattaact-----cagcaaatttaatataaagt-tagctat Dolphin ttgagtatcttcattttggggtagtat-acgtcaactc-agacagcaagtttaatataaaat-tagctac Cow ttgagtatctttattttggggtagtg--aaatcaact-----cagcaagtttaatataaaat-tagctac Sheep ttgagtatctttattttggagtagta--aaatcaactc-agacagtaagtttaatataaaat-tagctac Horse ttgagtatcttcatttttggatagtgt-atattaactc-agacagcaagtttaatagaacat-tagctac Chinese pangolin ttgagtatcttcatttttgggtagtgt-atgttaactc-agacagcaagtttaatataacat-tagctac Dog tgtagtatcttcatatttgggtagtat-atgttagct----------attttaatataacat-aagctac Hawaiian monk seal ttgagtatctccaattttgggtagtgt-atgttaactc-agacagcaagtttaatatcacgt-tagctac Hedgehog ctgcat--------tttgggatagtat-gttgc--ctt-gaacttcaatttgaatataacat-tagccac Shrew ttgagta-------ttttggattgtgt-atg----ctc-aggcaacaagtt-aatatggcat-taactac Elephant ttgagtatcttcatttttggatagcat-atgttaactc-aaacagcaagtttaatatagcatttagctcc Tenrec ttgagtaacctcattttaggataacac-atgttaactcaaaaaaacaagtttaatatagcatctagctgt Zebrafish ====================================================================== X. tropicalis ====================================================================== Opossum ====================================================================== Chicken ====================================================================== Mouse caat-tgagatgtt Rat caat-tgagatgtt GCF_003668045 caat-tgagatgtc Beaver aaat-tgatatgtc Squirrel aaat-tgagatatc Guinea pig aaat-tgagatgtc Rabbit aaat-tgagatggc Pika -------------- Human agac-tgagatgtc Chimp agat-tgagatgtc Bonobo agat-tgagatgtc Gorilla agat-tgagatgtc Rhesus aaac-tgggatgtc Marmoset aaat-tgagatgcc Tarsier aaat-tgagatgtg Bushbaby aaac-tgaaatgtc Tree shrew aaatctgagatac- Malayan flying lemur aaat-tgagatgta Pig aaat-tgagatatc Dolphin aaat-tgagatact Cow aaat-tgagatatc Sheep aaat-tgagatatc Horse aaat-taagatgtc Chinese pangolin aaat-ttagatgtc Dog aaat-cgagatgtc Hawaiian monk seal agat-tgaaatg-c Hedgehog agat-tcagatgtt Shrew a-at-ttagata-t Elephant aaac-tggtatgtc Tenrec aaac-ggatatgtt Zebrafish ============== X. tropicalis ============== Opossum ============== Chicken ============== Inserts between block 34 and 35 in window B D Pig 1bp B D Dolphin 122bp B D Cow 1bp B D Sheep 1bp B D Horse 1bp B D Chinese pangolin 1bp B D Dog 1bp B D Hawaiian monk seal 1bp B D Hedgehog 1bp B D Shrew 1bp Alignment block 35 of 407 in window, 56750054 - 56750536, 483 bps B D Mouse a-----gaataga----gaacag--------tctataaatact------tgca---ct----aa--aaat B D Rat ag----gagtaga----gaatag--------tctataaatact------tgca---ct----aa--aaat GCF_003668045 ag----aaataaa----gaatag--------tc-ataaataat------tgca---ct-----a--agat Beaver ag----gaataga----gaac-------------ataaatact------tgaa---ct----aa--aaat B D Squirrel ag----aaataga----gaatag--------tctataaatgct------tgaatttct----aa--aa-- B D Guinea pig aa----taat---------atag--------tctataaatagt------tgaa---ct----ta--aacc B D Rabbit ag----aaatgga----gaatag--------tctataaatat---------------------------- B D Pika ag----aaacgga----gactgg--------tctatacatatt------tgga---ct----tt--aaaa B D Human ag----aaataga----gaatag--------tctataaatact------tgaa---cttt--tt--aaaa B D Chimp ag----aaataga----gaatag--------tctataaatact------tgaa---cttt--tt--aaaa B D Bonobo ag----aaataga----gaatag--------tctataaatact------tgaa---cttt--tt--aaaa B D Gorilla ag----aaataga----gaatag--------tctataaatact------tgaa---cttt--tt--aaaa B D Rhesus ag----aaataga----gaatag--------tctataaataat------tgaa---cttt--tt--aaaa B D Marmoset atttacaaatctt----gagaagttcaagtttctataaatacc------tgaa---cttt--ta--aaaa B D Tarsier ag----aaataga----gaatcg--------tttatgaatacttgtacatgta---cttt--ta--aaaa B D Bushbaby ag----acacaga----caataa--------tccacaaataca---------------tt--tt--aaaa B D Tree shrew ca----gagcaga----gaatag--------tctataaatatt------tgaa---ct--------taaa B D Malayan flying lemur aa----aaataga----aaatag--------tctataaatatt------tgaa---cttt--aaaatata B D Pig -g----gaatggataatggatag--------tttataaatact------tgaa---cttaa-ga--aaaa B D Dolphin -g----gaatgga----gaatag--------tctataaacact------tgaa---tttat-ga--aaaa B D Cow -g----gaatgga----gaatag--------tctataaatact------tgaa---cataa-ga--aaaa B D Sheep -g----gaatgga----gaatag--------tctataaatact------tgaa---cttaa-ga--aaaa B D Horse -g----aaatgga----gaatag--------tctataaatact------tgaa---cttaa-ga--aaaa B D Chinese pangolin -g----aaatgga----gaatag--------tctataaatact------tgaa---tttaa-ga--aaaa B D Dog -g----agatggg----gaatag--------tctatgcaaact------tgaa---ctt---ga--aaaa B D Hawaiian monk seal -g----agatggg----gaatag--------tctatacaaact------tgaa---cttaa-ga--aaaa B D Hedgehog -g----atatgga----gaacag--------tctacaatcact------tgaa---cataagaa--aaaa B D Shrew -a----atat--a----gaagag--------tctaaaaatata------agaa---tataa-aa--aaga B D Elephant ag----aaatgga----gactag--------tctgtaaatact------tgaa---cttaa-ga--aaaa B D Tenrec ag----aaatgga----gagtag--------tctgtaaaggct------tgaa---tttaa-gc--aaaa B D Zebrafish ====================================================================== B D X. tropicalis ====================================================================== B D Opossum ====================================================================== B D Chicken ====================================================================== Mouse -gttct-----ga------attaagca----------------a--ctggtg-acaagagcttaatttaa Rat -gttct-----ga------attaagca----------------aattttgtg-agaagaacctaatttcc GCF_003668045 -gttca-----ga------attaaatg----------------a--attgtg-aaaaaagctgggattaa Beaver agttca-----ga------attaaata----------------a--gttgtgaaaaagagttgaagttaa Squirrel -gttca-----ga------attaaata----------------t--gttgtg-agaacagttaaatttaa Guinea pig agttca-----ga------attttaaa----------------a--tttgta-aagagggttgaactgaa Rabbit ---------------------------------------------------------------------- Pika -agtca-----ga------attcaaca-------------------gttgtg-aaagtagttgaatttaa Human -gttca-----ga------att----a----------------a--gttgtg-aaaatagttgaatttaa Chimp -gttca-----ga------att----a----------------a--gttgtg-aaaatagttgaatttaa Bonobo -gttca-----ga------att----a----------------a--gttgtg-aaaatagttgaatttaa Gorilla -gttca-----ga------att----a----------------a--gttgtg-aaaatagttgaatttaa Rhesus -gttca-----ga------att----a----------------a--gttgtg-aaaatagttgaatttac Marmoset -gttca-----ga------att----a----------------a--gttgtg-aaaatagttgaatttaa Tarsier -gttca-----ga------tttaaaca----------------a--attatg-aaaatagttgaatttaa Bushbaby -gttca-----ga------attaaata----------------a--gttgta-aaaatagttgaatttaa Tree shrew -gttca-----ga------attatac---------------------ttgca-aaaatagctaa------ Malayan flying lemur -gtgca-----ga------attaagca----------------a--gctgtg-aacataggtgaatttaa Pig -attca-----ga------gtcaaaca----------------a--gatatg-aaaa-agtttactttgg Dolphin -gttca-----ga------gttaaatg----------------a--gatgtg-aaaagagtttaatttgg Cow -gttca-----ga------gttaaatg----------------a--gatgtg-aaaagagtttaatttgg Sheep -gttca-----ga------gttaaatg----------------a--gatgtg-aaaagagtttaatttgg Horse -gttca-----ga------gttaaaca----------------a--gttgtg-aaaatagttgaattttg Chinese pangolin -gctca-----ga------gttaaaca----------------a--gtagtg-aaaatggttgaa-tttg Dog -gttta-----ac------attaaaca----------------a-----gtg-aaaatgattggatttgg Hawaiian monk seal -gttta-----gttttagagttaaacg----------------a--gttgtg-aaaatggttggattcgg Hedgehog -gttca-----aa------gttaaacatgtgaaaagaaaaaaaa--aatgtg-aaaagtactgaatttga Shrew -gttca-----ga------ggcaaacg----------------------gtg-aaaatacttgaatttgg Elephant -gttaagtattga------gttaaaca----------------a--attgtg-aaaatggttgaatttgg Tenrec -ataagtta--ga------gttcaaca----------------a--cttaag-aaaatggttgaatttgg Zebrafish ====================================================================== X. tropicalis ====================================================================== Opossum ====================================================================== Chicken ====================================================================== Mouse --aaatggagtttaac-ctaaaa-tcttata----aagtattca--------------tttgtgcatt-- Rat --aaatgcagtttaac-ctaaaattctcata----aattattca--------------tttgtgtatt-- GCF_003668045 --aaatgtagcttaat-ctaaat-tctcaca----aagtattca--------------tttgcacatt-- Beaver --agatatatcttagt-ctgaaattttcata----aagcattca--------------cttgtaaattg- Squirrel --agaca-----tgat-ctgaaattttcaaa----aagcattcagtttgcgaaaattgtctttgaattg- Guinea pig --aggcatgatttaat-ctgaaattattatg----aagcattca--------------ctagtacattg- Rabbit -----------------ctgaaattcttatg----aagcattca--------------tttgt------- Pika --aggtataatttaaacctggaattctcaca----cagcattca--------------tctgc------- Human --agata-----taat-ctgaaattcttatg----aagcattta--------------cttgcaca-tg- Chimp --agata-----taat-ctgaaattcttatg----aagcattta--------------cttgcaca-tg- Bonobo --agata-----taat-ctgaaattcttatg----aagcattta--------------cttgcaca-tg- Gorilla --agata-----taat-ctgaaattcttatg----aagcattta--------------cttgcaca-tg- Rhesus --agata-----taat-ctgaaattcttacg----aagcattta--------------cttgtaca-tg- Marmoset --agaca-----taat-ctgaaattcttatg----aagcattta--------------cttataca-tgt Tarsier --agacaact--taat-ttgaaattcttatg----aagcattta--------------tttgttcattg- Bushbaby --agacaaaa--caat-ctgaaattcctatgaagcaagcattca--------------ctcatacattg- Tree shrew -----aataa--caat-ttgaaattcttttg----atg-actca--------------tttatgcattg- Malayan flying lemur --aggaataa--caat-ctgaaattcttata----aagcattca--------------tttgtacattg- Pig gaagatgtaaattaat-ctg-aattcttatg----aaacattca--------------tttgtacaatg- Dolphin --agac--aaattaat-ctgaaattcttatg----aaacattca--------------tttgtacattg- Cow --agacataaattaat-ctgaaattcttatg----aaacattca--------------tttgtacatta- Sheep --agacataaattaat-ctgaaattcttatg----aaacattca--------------tttgtacatta- Horse --agacataaactaat-ctgaaattcttatg----gaacattca--------------tttgtacattg- Chinese pangolin --ggacataaattaat-ctgaaattcttatg----aagcattca--------------ttgatatactg- Dog --agac--aaattaat-ctgaaatttttatg----aagcattta--------------tttgtatattg- Hawaiian monk seal --aggc--aaattaat-ctggaattcttacg----gaacattca--------------tttgtgtattg- Hedgehog --agatgtagatttat-ctg-aatttttaca----aaggattca--------------tttacacacta- Shrew --aga--caaattaat-ttgaaattcttaca----aagcattga--------------tttatacaatg- Elephant --agacaaaaattaat-ctgaaacccttatg----gtgcat--------------------------tg- Tenrec --aagcacaa--caat-ctg-------taag----ctgtat--------------------------tg- Zebrafish ====================================================================== X. tropicalis ====================================================================== Opossum ====================================================================== Chicken ====================================================================== Mouse --------atg---atgatacatttgaatcatcttgaacatgatttcc------tcttggagaattgaaa Rat -attttaaata---atgatacacatggatcatctggaatataatttcc------tagtgagaaattgtaa GCF_003668045 -actttaaatg---atgataaaaatgaatcatcttgtatacaatttcc------tagtgaaatattttaa Beaver tgtttgaaata---aagatactatgtcagaatcctgaatataattttc------taatgcattatcctaa Squirrel tctttgaattg---aagatagtact-cagaatcctgaatgtaattttc------tagtgcatt------- Guinea pig tgtttgaaatg---aagataatatttcagaataatgaatgtaatttta------tagtg----------- Rabbit -attagaaata--------aatatttcaaaattctgaacgtaattttc------tagtacaca------- Pika -attagaaata---aagttaatatttcagaatcctggagctaatttcc------cagcacata------- Human catttgaagtg---aagatagtcttctagaatcctgaatgtgattttc------tagtgtatt------- Chimp catttgaaggg---aagatagtcttctagaatcctgaatgtgattttc------tagtgtatt------- Bonobo catttgaaggg---aagatagtcttctagaatcctgaatgtgattttc------tagtgtatt------- Gorilla catttgaagtg---aagatagtcttctagaatcctgaatgtgattttc------tagtgtatt------- Rhesus catctgaaatg---aagatagtcttctagaatcctaaatgtgattttc------tagtgtatt------- Marmoset tatttgaagtg---aagatagtcttccagaatcctgaatgtgattttc------tagtgtgct------- Tarsier tatttgaaatg---aagatggtattttaaaatactgaatgtaactttc------tggtgtctt------- Bushbaby tattcaaaatg---aagatagtttttcagaatcctgaatataattttc------tagtgtatt------- Tree shrew tacttgaaata---aaaatagtatttcagaattctga--gtaattttc------tagtgcatt------- Malayan flying lemur tatttaaaatg---aagatagtatttcagaatccttaatgttactttc------tggtacatt------- Pig tatttaaaat-------gtagtatttcagcatcccgaatataactttc------tggtgcatt------- Dolphin tatttgaaata---aagatagtatttcagcatactgaatataattttc------tagtgcatt------- Cow tatttaaaat-------atagtatttc------ctgagtataattttc------tagtgcatt------- Sheep tatttaaaat-------atagtattgc------ctgagtataattttc------tagtgcatt------- Horse tatttgaaata---aagatagtacttcagaatcctgtgtataattttc------cagtgcatt------- Chinese pangolin ta----------------------ttcagaatcctgaatataattatc------tagtgcatt------- Dog tatttgaaata---aagatagtatttcagaatcctgaatataattttc------tagtgcatt------- Hawaiian monk seal tatttgaaata---aagatagtatttcagaatcatgaatataattttc------tagtgcatt------- Hedgehog tt--tgaaata---aaggtagtatttctaaatcttgaatataatttt-------tagtgcatt------- Shrew ta--caatgtacttgaaacagtactcctaaatctggagtataatcttcaatgtataatgtatt------- Elephant tgtttgaaatg---acgataatatttcacaatcatgagtgtaattttc------tagtgcattat----- Tenrec gatttaaaat------gatagtatttcaaaatcatgagcgtagttttc------tagtgtattat----- Zebrafish ====================================================================== X. tropicalis ====================================================================== Opossum ====================================================================== Chicken ====================================================================== Mouse aatattgtttgataattaaaaaacaaata-aatcca--aaaa--atttaaaactcatttttcagaacatg Rat aacattgtttgataattaaaaaacaaaagtagtcca--acaa--ctttataacttgtttttcaaaacaca GCF_003668045 aaac---tttgataatcaaaaaacaagta-agttca--aaaa--atttagaacttgtgttcctgaacata Beaver aa----------------------------agt------------------gtctatttttgtggacgta Squirrel ------------------------------atttta--aaaa--ct-----agctgtccttgggaacaca Guinea pig -------------catt-------------attttt--aaag--ca-----ggctgtcctcgggaacata Rabbit ------------------------------actttaacaaag--ct-----agtcatctttgtgaacata Pika ------------------------------atttta--aaaa--cc-----tgtgatctttgtgcacata Human ------------------------------atttta--aaaa--ct-----ggctgtccttgtggatgta Chimp ------------------------------atttta--aaaa--ct-----ggctgtcctcgtggatgta Bonobo ------------------------------atttta--aaaa--ct-----ggctgtcctcgtggatgta Gorilla ------------------------------atttta--aaaa--ct-----ggctgtcctcgtggatgta Rhesus ------------------------------atttta--aaaa--ct-----ggctgttctagcggatgta Marmoset ------------------------------atgtta--aaaa--ct-----ggctgtcctcatggat-ta Tarsier ------------------------------attttt--aaaa--at-----ggctgtccttgtggccatt Bushbaby ------------------------------atttaa--aaaa--ca-----ggctgtccttgaagagata Tree shrew ------------------------------atttta--aaaa--ct-----aac--------tggacgta Malayan flying lemur ------------------------------atttta--aaaa--ct-----ggctgtccttgtggacgta Pig ------------------------------atttaa--caaa--ct-----ggctgtccttgaagaccta Dolphin ------------------------------atttaa--caga--ct-----ggctgtccttgcagacaca Cow ------------------------------atttaa--caga-----------ctgtccttgtagacata Sheep ------------------------------atttga--caga-----------ctgtccttgtagacata Horse ------------------------------attttt--gaaa--ct-----ggccgtccttgcagacata Chinese pangolin ------------------------------atttta--aata--ct-----ggctgtccttgcagacata Dog ------------------------------atttta--aact--ct-----ggttgtccttgcagacata Hawaiian monk seal ------------------------------atttta--aaca--ct-----ggttgtcctt-cagacata Hedgehog ------------------------------gtttta--aattctct-----ctctgtccttatagacata Shrew ------------------------------atttta--aataaatt-----gaat---cccatgggcata Elephant --------------------------------ttta--aaaa--ct-----ggctgtccatatagacaca Tenrec --------------------------------ttta--aaaa--tt-----ggttgtctatataattaca Zebrafish ====================================================================== X. tropicalis ====================================================================== Opossum ====================================================================== Chicken ====================================================================== Mouse ctaacttcatgaagataaaa-aagaagctgtttggaa-ttttctt--cacaccaaacaaag-tt---aa- Rat ctattttcgtggagataaaatttgaagctgtgaggaa-ttttctt--tgcac----caaag-tt---aa- GCF_003668045 atattttcatgaagacagaa-atgaagttgcactgaa-ttttctt--cacagtaaataaag-tt---aag Beaver ctgttctcatgaaggtagaa-atgaagttgtgctgaa-ttttctt--catag----caaag-tt---aa- Squirrel tagttctcatgaaggtagaa-gtgaagttatactgaa-ttttctt--catttcaaataaag-tt---aa- Guinea pig ctgttctcatgaagatacaa-ataaagtcgcactgaa-ttttttc-----------tgagg-ct---aa- Rabbit gtgttgtcatgaagatagaa-ataaaggtgcactgaatttttctt--tatatgaaataaaa-tc---aa- Pika gggtgctca---------ga-atgaagttgtgctgaagttgtctt--tgttgcaaaaaaag-tt---aa- Human ctattctcaggaagatataa-atgatattgcactaaatttgtctt--catat----taaag-tt---aa- Chimp ctattctcaggaagatataa-atgatattgcactaaatttgtctt--catat----taaag-tt---aa- Bonobo ctattctcaggaagatataa-atgatattgcactaaatttgtctt--catat----taaag-tt---aa- Gorilla ctattctcaggaagatataa-atgatattgcactaaatttgtctt--catat----taaag-tt---aa- Rhesus ctgttctcagaaagatataa-atgatattgcactaaatttttctt--catat----taaag-tt---aa- Marmoset ctgttctcaggaagatataa-aagatatggaactatgtttttttt--catat----tgaag-tt---aa- Tarsier ctgttcttgtgaagatataa-atgaaattgcactacatttttctt--catatccaataaaa-tt---aa- Bushbaby ctgttttcatgacggtat-g-atgaagttgcactaaatttttctt--cgtat----caaat-t------- Tree shrew ctgttatcatgaagtaataa-atgaaggtgcactgaatttttctt--taattgaaataaac-tt---aa- Malayan flying lemur ttgttctcatgaagatataa-atgaagttgcactgaatttttctt--catatcaaatacgt-tt---aa- Pig ctattattgtgaaaatat-----aaagttgccctatgtttttctt--catatcaaataaag-tg---aa- Dolphin ctgttcttgtgaaaatataa-gtgaagttgccgtggatttttctt--catatcaaacaaag-tt---aa- Cow ctgttcttgtgaaaatataa-atgaagttgccctggatttttctt--catattaaataaag-tt----a- Sheep ctgttctt----aaatat-a-atgaagttgccctggatttttctt--cattttaaataaag-tt----a- Horse ctgttcttgtaaaaatataa-atgaagatgcactgggtttttctt--catagcaaataaa--tt---aa- Chinese pangolin ctgttctcatgaaactataa-atgaaactgcactggatttttcat--catatcaaataaag-tt---aa- Dog ccgttctcatgaaaatataa-atgaagttgcactgggtttttcat--catatgaaataaaagtt---aa- Hawaiian monk seal ctgttttcatgaaaatataa-atgaagttgcactggatttttcat--catatgaaataaagtta---at- Hedgehog gtactctcttgaaaatataa-ataaaattacagtggatttttaaaatcacatccaataaag-tt---aa- Shrew ttactctcatgaaaattaaa-atgaagttgtactggagttttcag--catatc----aagg-ct---aa- Elephant ttggtctcatgaaaatataa-gtgaagttgcactgaatttttctt--tatataaaataaag-ttaataa- Tenrec atggcctcttgaaaatataa-aagaaattgtac------tttttt--tgcagta--------tttgtaa- Zebrafish ====================================================================== X. tropicalis ====================================================================== Opossum ====================================================================== Chicken ====================================================================== Mouse cctt-tg-ataaattattttataactttatagagaatgaactttatagtcaaatgctagc---------g Rat cttt-tg-tcaaattaatttacatttttatagagaatgaaactt-taggcaaatgccaat---------g GCF_003668045 tttt-tg-tgaaattaatttataattttatagagaatgacattt-tagacaaattccaat---------a Beaver cttt-tc-ttaaa-taatttgcaattttaaagagagtgaaatct-taggcaaatgccatt---------a Squirrel cttt-tg-ttaaa-taatttataattttatacagaatgaaatct-tagacaaataccaat-----aaaga Guinea pig cttt-tg-ctaaa-taatttatgattttatagagaatgagatct-tagacaaatgcaaat---------a Rabbit tttt-tg-ctaaa-taatttctaatttta--------aacattt-taggttaatatcaat-----agaga Pika ttct-tg-t-----taacttgtggttttatagagaataacatct-ttggtaaatatcaat-------aga Human tttt-tg-t-aaa-taagttatga-tttatagacaatgaaatct-taggcaaatgccagc-----agagt Chimp tttt-tg-t-aaa-taatttatga-tttatagacaatgaaatct-taggcaaatgccagc-----agagt Bonobo tttt-tg-t-aaa-taatttatga-tttatagacaatgaaatct-taggcaaatgccagc-----agagt Gorilla tttt-tg-t-aaa-taatttatga-tttatagacaatgaaatct-taggcaaatgccagc-----agagt Rhesus tttt-ta-t-aaa-caatttataa-tttataaacaatgaaatct-taggcaaatgccagc-----agaat Marmoset tttt-tg-t-aaa-taatttatta-gtcatagagaatgaaatct-taggcaaatgccaac-----ag--t Tarsier tttt-tg-tcaga-taatttgtaa-tttattgagaatgaaatca-taggcaaaggtcaat-----agaa- Bushbaby tttt-gt-t-aga-taaggtataattttatggggagtgaaatct-taggcaaatgccatc-----agaga Tree shrew tttt-ta-a-aaa-taatttataattttatagaaaatgaagtct-taggcaaatgcctat-----agg-- Malayan flying lemur tttt-tgtt-aag-taatttatagttttacagagaatgaaatct-taagcaaatgccaat-----aggga Pig ttttgtg-ttaaa-taatttatagttttgtggagaacgtaattt-ttggcaaatgccaat---------a Dolphin ctttgtg-ttaaa-taatttataattttgtagagaatgcaattt-taggcaaatgccaat---------a Cow ttttgtg-cta----aatttataattttatagtgaat-caattt-cagacaaatgttaat---------a Sheep ttttgtg-ctaaa-taatttataattttatagagaat-ctattt-caggcaaatgttaat---------a Horse ttttgtg-ttaga-aattttataattttgtagagaatgcaatct-taggcaaataccaat---------a Chinese pangolin ttctgtg-ttaag-taatttataattttgtagagaatgcagttg-taggcaaatactaat-----agaga Dog ttttgtc-tcaga-taatttataattttgtagagaatccaactg-taggcaaatgccaat-----ggaga Hawaiian monk seal ttttgtc-ttaaa-taatttataattttatagagaatccaactg-ttggcaaatgccagt-----agaga Hedgehog ttctgtg-taaaa-taa--cataactttatagagaat-aaaatt-gtaacatatgcctatctcagagagt Shrew atttatg-tagaa-taatttgtagttttgtagaaa---aaaatt-ttagaaaatgctaat---------- Elephant ttttatg-gtaag-caatttataattttacagagaagaaaatct-taagcaaacactaat-----agaga Tenrec ttttact-gagaa-tta-----aatcttacagaaaataaaata--gaagccaatactaat---------a Zebrafish ====================================================================== X. tropicalis ====================================================================== Opossum ====================================================================== Chicken ====================================================================== Mouse gtctttgaaatttgtcatac-------ttatgaaaaagatggt-ccgatttttaattaacttt-caacca Rat gcctttgaaattcatcataa-------ttatgaaaaatatgat-ctgatttttaattaacttc-caacca GCF_003668045 gtctttgaaattcatcatat-------ttatga------------------------------------- Beaver gtttttgaaattcatgttat-------ctattataaaaaacat-tcttggggtcattaacttt-tagcca Squirrel gtgtttgaaattgataatatt-atctattatgaaaaatattat-ttga--cctggctaactttaaaacta Guinea pig gtctttgaaattcataatac-----tattatgaaaaatacgct-ttga--actagtctacttt-aaacca Rabbit gtctttgaagttcatgttat----ctattatgaaaaacatcct-ttgg--cctggttaacttt-taagta Pika gtctttgaaaatcacat--------tattatgaaaaacattct-ttgg--tgttgttaacttt-aa---a Human gtctttgaaattcataatgtt-atctgttatgaaaaacattct-ttga--cctggttacattt-taacca Chimp gtctttgaaattcataatgtt-atctgttatgaaaaacattct-ttga--cctggttacattt-taacca Bonobo gtctttgaaattcataatgtt-atctgttatgaaaaacattct-ttga--cctggttacattt-taacca Gorilla gtctttgaaattcataatgtt-atgtgttatgaaaaacattct-ttgc--cctggttacattt-taacca Rhesus gtctttgaaattcataatgtt-atctgttatgaaaaacattat-ttga--cctggttatattt-taacca Marmoset gtctttgacatttataatgtt-atcttttatgaaaaacattct-ttga--cctggttatattt-taacaa Tarsier -tctttgaaattcataatatt-atttattacaaaaaacattct-ttga--tctggttatattt-taacca Bushbaby gtctctgaaattcgtgatgtt-atctgttatgaaaaacattct-ttgt--cttggtt--cttt-tgagca Tree shrew gtctttacaattc---atatt-atgtattatgaaagtcattct-ttga--cctcattaagttt-cagcca Malayan flying lemur gtatttgaaatttgtaatgtt-atctactatgaaaaacattct-ttga--tctggttaactat-taacca Pig gtctttgaaactc---ctgtt-at----tatgaaaaatattct-ttga--cctggttagcttt-taacca Dolphin gtctttgaaattc---atgtt-atttattatgaaaaatattct-ttga--cctgattaacttt-taacta Cow gtctttgaaattc---atatt-atctactatgaaaaatattct-ttga--tctggctagtttt-taactg Sheep gtctttgaaattc---atatt-atctactatgaaaaatattct-ttga--tctggctagcttt-taacta Horse gtctttgaaattcataatgtt-atctattattaaaaacattct-ttga--tctggttagattt-taacta Chinese pangolin gttcttgaaattcatcatgtt-atttattatgaaaaacattct-ttga--cctggtcgacatt-taatta Dog cactttgaaattcatgatgtt-atctattatgaaaaacattcc-ttga--cctgggttgcttt-tattta Hawaiian monk seal gac-ttgaaattcatgatgtt-atctattatgaaaaacattcc-ttga--cctgggttgcttt-taacta Hedgehog cttattgaagtttataatgtttttctgccatgaagaacattttggggg--cctgattagcttt-acacta Shrew --------agcctctgatatt---------caaagaaaattct-ttga--cctggttagcttt-aaacta Elephant gcctttaaaaatcataatgtt-atccattctgcaaaacaccct-ttga--cctggttaacttt-taacca Tenrec gtctttaaaagccataatgtt-atccagcctgaaatacatcct-ttaa--cctgattgacttt-taacca Zebrafish ====================================================================== X. tropicalis ====================================================================== Opossum ====================================================================== Chicken ====================================================================== Mouse gtagtacttttaaacaa---acttgataataattatatatcaac--aaagtgtg-tcatgtgagata Rat atagtatttttaagcaa---acttattaataattatatatcaac--aaaatatg-tcatgtgagaga GCF_003668045 --------------caa---act---aaataattgtatgtcagt--aaaatgtg-tcatgtgaaata Beaver ttggtattttaaaacaa---actt-------attatataatagt--aaaatctg-tcatataaaatt Squirrel gtattagttttaatcaa---a----------aggata-attaag--aaatttt-------------- Guinea pig gtcgtattttaatataa---aatta------attatctatcagt--aaaatgt---catataaaata Rabbit gtagtatcttttaagaa---gatgg------attacatatcaat--aaaatgtg-tcatataaaata Pika ctagtatcttttaaaaa---gctgg------atcacatgtcaat--aaagcatgtttctataaagtg Human gtagtatttcaaaataa---aattaatg---atcatgtatcagt--aaaatgta-ttgtataaaata Chimp gtagtatttcaaaataa---aattaatg---atcatgtatcagt--aaaatgta-ttgtataaaata Bonobo gtagtatttcaaaataa---aattaatg---atcatgtatcagt--aaaatgta-ttgtataaaata Gorilla gtagtatttcaaaataa---aattaatg---atcatatatcagt--aaaatgta-ttgtataaaata Rhesus ctagtatttcaaaataa---aattaatg---attatatatcagt--aaaatgtg-ttgtataaaata Marmoset gaagtatttcaaaataa---aattaatg---attatgtatctgt--aaaatgta-ttgtataaaatg Tarsier gtagt--------atga---aattaatg---atcatatgtcagc--aaagtgtg-ccatataaaata Bushbaby gtagtgttttaaaacaa---aattaatg---attctgtatcagt--aaaatgtg-tcacataaaata Tree shrew ttagtattttaaagaaa---aa--aatg---attatgtatcagt--aacatgtg-tcatatgacata Malayan flying lemur gttgtattttaaaacaa---aattaatg---attatgtatcagt--aaaatgta-tcagataaaata Pig ttagtgttt-----taaaacaattaatg---attatgtatcagt--aaaatgtg-tcatataaaatg Dolphin ----tgttttaaaacaa---aattaatg---attatgtatcgct--aaaatgtg-tcatataaaata Cow ----tgttt-----taa---aattagta---attatgtattggt--aaaacatg-tcatatgaaata Sheep ----tgttt-----caa---aattagta---attatgtattggt--aaaacatg-tcatatgaaata Horse ttagtattttaaaacaa---aatttatg---attatgtatcagt--aaaatgtg-tcatataaaata Chinese pangolin ttagtgtcttaaagcaa---aattaatg---attataaat-------aattatg-tttttggaa--- Dog ttagtgtcttaaaataa---gattaatg---attatgtagtagt--aaaatgtg-tcatataaaata Hawaiian monk seal tttgtgtcttaaaacaa---gattaatg---attatgtagtagt--aaaatgtg-tcatataaaata Hedgehog tcagtgtt--aaaacaa---aattagta---actatgtatcagt--aaaatttg-tcatgtaaaata Shrew tcag-gtc-------------atgcatg---atgacgaatcagt--aaaccctt-ttatataaaatg Elephant gtagtgtgttaaggcaa---aattaatg---attatgtatcagt--aaaatgtg-tgagtagatata Tenrec ggagtgttttaagtcaa---aattattg---ataatgtataaataaaaaatgtg-tcagtaaaaata Zebrafish =================================================================== X. tropicalis =================================================================== Opossum =================================================================== Chicken =================================================================== Alignment block 36 of 407 in window, 56750537 - 56750543, 7 bps B D Mouse gccaaaa B D Rat gcaaaga GCF_003668045 gcaacaa Beaver acaagga B D Guinea pig ataagaa B D Rabbit gcaggaa B D Pika gcagaaa B D Human gcaggga B D Chimp gcaggga B D Bonobo gcaggga B D Gorilla gcaggga B D Rhesus gcaggga B D Marmoset gcaggga B D Tarsier gtggaaa B D Bushbaby gcaggaa B D Malayan flying lemur gcagaaa B D Pig -ccaaaa B D Dolphin -caaaaa B D Cow -cc-aaa B D Sheep -ccaaaa B D Horse -ccaaa- B D Dog -caaaa- B D Hawaiian monk seal -caaaa- B D Hedgehog -c----- B D Shrew -cc---- B D Elephant -ccagta B D Tenrec -ctagta B D Tree shrew ------- B D Zebrafish ======= B D X. tropicalis ======= B D Opossum ======= B D Chicken ======= B D Squirrel ------- B D Chinese pangolin ------- Inserts between block 36 and 37 in window B D Pig 1bp B D Dolphin 1bp B D Cow 1bp B D Sheep 1bp B D Horse 1bp B D Hedgehog 17bp B D Shrew 11bp Alignment block 37 of 407 in window, 56750544 - 56750545, 2 bps B D Mouse aa B D Rat aa GCF_003668045 aa Beaver aa B D Squirrel aa B D Guinea pig aa B D Rabbit aa B D Pika ca B D Human aa B D Chimp aa B D Bonobo aa B D Gorilla aa B D Rhesus aa B D Marmoset aa B D Tarsier a- B D Bushbaby ga B D Malayan flying lemur aa B D Pig ag B D Dolphin aa B D Cow aa B D Sheep aa B D Chinese pangolin aa B D Dog aa B D Hawaiian monk seal aa B D Elephant aa B D Tenrec aa B D Horse == B D Tree shrew -- B D Hedgehog == B D Zebrafish == B D X. tropicalis == B D Opossum == B D Chicken == B D Shrew == Inserts between block 37 and 38 in window B D Pig 1bp B D Cow 1bp B D Sheep 1bp Alignment block 38 of 407 in window, 56750546 - 56750546, 1 bps B D Mouse a B D Rat a B D Malayan flying lemur g B D Elephant a B D Tenrec a B D Guinea pig - B D Sheep = B D Rhesus - B D Hawaiian monk seal - B D Dog - B D Horse = B D Marmoset - B D Gorilla - B D Bonobo - B D Chimp - B D Human - B D Tarsier - B D Tree shrew - B D Hedgehog = B D Pika - B D Zebrafish = B D X. tropicalis = B D Cow = B D Opossum = B D Chicken = B D Shrew = B D Squirrel - B D Pig = B D Rabbit - B D Chinese pangolin - B D Dolphin - B D Bushbaby - Beaver - GCF_003668045 - Alignment block 39 of 407 in window, 56750547 - 56750547, 1 bps B D Mouse a B D Elephant a B D Tenrec a B D Guinea pig - B D Sheep = B D Rhesus - B D Hawaiian monk seal - B D Dog - B D Horse = B D Marmoset - B D Gorilla - B D Bonobo - B D Chimp - B D Human - B D Tarsier - B D Tree shrew - B D Hedgehog = B D Pika - B D Zebrafish = B D X. tropicalis = B D Cow = B D Opossum = B D Chicken = B D Shrew = B D Squirrel - B D Pig = B D Rabbit - B D Chinese pangolin - B D Dolphin - B D Bushbaby - Beaver - B D Malayan flying lemur - GCF_003668045 - B D Rat - Alignment block 40 of 407 in window, 56750548 - 56750582, 35 bps B D Mouse aaaaaaaaaaaaaaaaaaccctgagagttcaaaag B D Rat ----------------------ggtagtttaaaag GCF_003668045 ----------------------gatagttt-aaag Beaver ----------------------gataattt-aaaa B D Squirrel ----------------------gcttattcaaaa- B D Guinea pig ----------------------gataattttaaa- B D Rabbit ----------------------cgtagca--aaaa B D Pika ----------------------tgcaac----aaa B D Tarsier ----------------------ggtaatttaaaaa B D Bushbaby ----------------------ggtaa--taaaaa B D Chinese pangolin ----------------------------------a B D Dog ----------------------------------a B D Elephant -------------------------gg-------- B D Tenrec -------------------------ag-------- B D Sheep =================================== B D Rhesus ----------------------------------- B D Hawaiian monk seal ----------------------------------- B D Horse =================================== B D Marmoset ----------------------------------- B D Gorilla ----------------------------------- B D Bonobo ----------------------------------- B D Chimp ----------------------------------- B D Human ----------------------------------- B D Tree shrew ----------------------------------- B D Hedgehog =================================== B D Zebrafish =================================== B D X. tropicalis =================================== B D Cow =================================== B D Opossum =================================== B D Chicken =================================== B D Shrew =================================== B D Pig =================================== B D Dolphin ----------------------------------- B D Malayan flying lemur ----------------------------------- Inserts between block 40 and 41 in window B D Tarsier 5bp B D Chinese pangolin 17bp B D Dog 9bp Alignment block 41 of 407 in window, 56750583 - 56750599, 17 bps B D Mouse acctgaagctcaatg-----tc B D Rat actgtaaactcaagg-----ta GCF_003668045 actgtaaaatccaga-----tc Beaver attct-agttcaaaa-----ta B D Squirrel ------tattcaaaa-----ta B D Rabbit aattttaggtccaaaataacta B D Pika acttttagattaaaa-----ta B D Bushbaby -----aatgtc----------- B D Hedgehog -----actttcaaag-----tt B D Elephant ----------caatt------- B D Tenrec ---------tcaatt------- B D Guinea pig ---------------------- B D Sheep ====================== B D Rhesus ---------------------- B D Hawaiian monk seal ---------------------- B D Dog ====================== B D Horse ====================== B D Marmoset ---------------------- B D Gorilla ---------------------- B D Bonobo ---------------------- B D Chimp ---------------------- B D Human ---------------------- B D Tarsier ====================== B D Tree shrew ---------------------- B D Zebrafish ====================== B D X. tropicalis ====================== B D Cow ====================== B D Opossum ====================== B D Chicken ====================== B D Shrew ====================== B D Pig ====================== B D Chinese pangolin ====================== B D Dolphin ---------------------- B D Malayan flying lemur ---------------------- Alignment block 42 of 407 in window, 56750600 - 56750600, 1 bps B D Mouse a B D Rat a GCF_003668045 a Beaver g B D Squirrel a B D Rabbit a B D Pika a B D Guinea pig - B D Sheep = B D Rhesus - B D Hawaiian monk seal - B D Dog = B D Horse = B D Marmoset - B D Gorilla - B D Bonobo - B D Chimp - B D Human - B D Tenrec - B D Tarsier = B D Tree shrew - B D Hedgehog - B D Zebrafish = B D X. tropicalis = B D Cow = B D Opossum = B D Chicken = B D Shrew = B D Elephant - B D Pig = B D Chinese pangolin = B D Dolphin - B D Bushbaby - B D Malayan flying lemur - Alignment block 43 of 407 in window, 56750601 - 56750625, 25 bps B D Mouse ctagatgaaaggattgt--aaatgttc B D Rat ct-------aggattct--aaat-ttt GCF_003668045 ctagatgaaagggttct--gaatgttt Beaver ctagaagagaggatcct--gaatgttc B D Squirrel ctcaaagaaaaggttct--taatgttc B D Guinea pig -------------ttct--gaatgttc B D Rabbit ctagaagagagtattct--gaatgttc B D Pika ttagaaggcagcaatctgggaatgttc B D Human --------ggtaattgc--aaattttt B D Chimp --------ggtaattgc--aaattttt B D Bonobo --------ggtaattgc--aaattttt B D Marmoset --------ggtaagtga--aaa----- B D Cow -----------ctattt--aaattt-- B D Sheep -----------ctattt--gaattt-- B D Elephant -----------------aaaaattttc B D Tenrec -----------------aagaatt--- B D Rhesus --------------------------- B D Hawaiian monk seal --------------------------- B D Dog =========================== B D Horse =========================== B D Gorilla --------------------------- B D Tarsier =========================== B D Tree shrew --------------------------- B D Hedgehog --------------------------- B D Zebrafish =========================== B D X. tropicalis =========================== B D Opossum =========================== B D Chicken =========================== B D Shrew =========================== B D Pig =========================== B D Chinese pangolin =========================== B D Dolphin --------------------------- B D Bushbaby --------------------------- B D Malayan flying lemur --------------------------- Inserts between block 43 and 44 in window B D Marmoset 3bp Alignment block 44 of 407 in window, 56750626 - 56750627, 2 bps B D Mouse tt B D Rat tt GCF_003668045 tt Beaver tc B D Squirrel tt B D Guinea pig tt B D Rabbit tc B D Pika tc B D Marmoset tt B D Cow tt B D Sheep tt B D Rhesus -- B D Hawaiian monk seal -- B D Dog == B D Horse == B D Gorilla -- B D Bonobo -- B D Chimp -- B D Human -- B D Tenrec -- B D Tarsier == B D Tree shrew -- B D Hedgehog -- B D Zebrafish == B D X. tropicalis == B D Opossum == B D Chicken == B D Shrew == B D Elephant -- B D Pig == B D Chinese pangolin == B D Dolphin -- B D Bushbaby -- B D Malayan flying lemur -- Inserts between block 44 and 45 in window B D Cow 2bp Alignment block 45 of 407 in window, 56750628 - 56750629, 2 bps B D Mouse t--t B D Rat a--a Beaver a--t B D Squirrel a-cc B D Guinea pig acct B D Rabbit a--c B D Pika a--t B D Sheep --tt B D Rhesus ---- B D Hawaiian monk seal ---- B D Dog ==== B D Horse ==== B D Marmoset ---- B D Gorilla ---- B D Bonobo ---- B D Chimp ---- B D Human ---- B D Tenrec ---- B D Tarsier ==== B D Tree shrew ---- B D Hedgehog ---- B D Zebrafish ==== B D X. tropicalis ==== B D Cow ==== B D Opossum ==== B D Chicken ==== B D Shrew ==== B D Elephant ---- B D Pig ==== B D Chinese pangolin ==== B D Dolphin ---- B D Bushbaby ---- B D Malayan flying lemur ---- GCF_003668045 ---- Alignment block 46 of 407 in window, 56750630 - 56750649, 20 bps B D Mouse tattatcttaca----atgtctgc B D Rat aattatcttgtg----ctacctga GCF_003668045 tatgatcttatg----ttatctga Beaver cacaagaaaatgatgaatgtttga B D Squirrel caggaaatgataataaatgcttga B D Guinea pig caggaaatgata---aatgtttaa B D Rabbit cacaaagcaatgattaatgtttga B D Pika cacaaacgaacg---aatgttcga B D Sheep ------------------------ B D Rhesus ------------------------ B D Hawaiian monk seal ------------------------ B D Dog ======================== B D Horse ======================== B D Marmoset ------------------------ B D Gorilla ------------------------ B D Bonobo ------------------------ B D Chimp ------------------------ B D Human ------------------------ B D Tenrec ------------------------ B D Tarsier ======================== B D Tree shrew ------------------------ B D Hedgehog ------------------------ B D Zebrafish ======================== B D X. tropicalis ======================== B D Cow ======================== B D Opossum ======================== B D Chicken ======================== B D Shrew ======================== B D Elephant ------------------------ B D Pig ======================== B D Chinese pangolin ======================== B D Dolphin ------------------------ B D Bushbaby ------------------------ B D Malayan flying lemur ------------------------ Alignment block 47 of 407 in window, 56750650 - 56750650, 1 bps B D Mouse g B D Rat g GCF_003668045 g Beaver g B D Squirrel g B D Guinea pig a B D Rabbit g B D Pika g B D Gorilla g B D Rhesus g B D Sheep - B D Hawaiian monk seal - B D Dog = B D Horse = B D Marmoset - B D Bonobo - B D Chimp - B D Human - B D Tenrec - B D Tarsier = B D Tree shrew - B D Hedgehog - B D Zebrafish = B D X. tropicalis = B D Cow = B D Opossum = B D Chicken = B D Shrew = B D Elephant - B D Pig = B D Chinese pangolin = B D Dolphin - B D Bushbaby - B D Malayan flying lemur - Alignment block 48 of 407 in window, 56750651 - 56750664, 14 bps B D Mouse gtgactgacatttt B D Rat gtgattg-cactta GCF_003668045 atgactgacatgct Beaver gtgattgctgtgct B D Squirrel gcagtggatattct B D Guinea pig gtgatggatgtgca B D Rabbit gtactggatctgct B D Pika gcgctggatatatt B D Gorilla gtaattgca----- B D Rhesus gtaactgaa----- B D Pig gtgatttaaatttt B D Chinese pangolin -----------ttt B D Tenrec ----------tttt B D Sheep -------------- B D Hawaiian monk seal -------------- B D Dog ============== B D Horse ============== B D Marmoset -------------- B D Bonobo -------------- B D Chimp -------------- B D Human -------------- B D Tarsier ============== B D Tree shrew -------------- B D Hedgehog -------------- B D Zebrafish ============== B D X. tropicalis ============== B D Cow ============== B D Opossum ============== B D Chicken ============== B D Shrew ============== B D Elephant -------------- B D Dolphin -------------- B D Bushbaby -------------- B D Malayan flying lemur -------------- Inserts between block 48 and 49 in window B