Multiz Alignments of 35 Vertebrates

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Capitalize exons based on show bases

Place cursor over species for alignment detail. Click on 'B' to link to browser for aligned species, click on 'D' to get DNA for aligned species.
Alignment block 1 of 287 in window, 56742256 - 56742508, 253 bps B D Mouse tcacccaggtgcggagccagccagaaacagacggcggaaggagtttccc-ggactgagctgtcactcacc B D Rat tcacccaggtgcggagccagccagaaacagacggcggaaggagtttccccggactgagctgccactcacc GCF_003668045 tcacccaggtgcggagccggcctg----agacagcggaaggagtttcccagaactgagctgtcactcacc Beaver tcacccaggtgcggagccagcctgcaaaagacagcggaaggagtttccc-ggactgcggtgtcactcacc B D Squirrel tcacccaggtgcggagccagcctgaaaaagacagcggaaggagtttccc-ggaccgcgctgtcactcacc B D Guinea pig tcatccaggtgcggagccagcctgaaaaagacagcggaaggaattttcc-ggactgcgctgccgctcaca B D Rabbit tcactcaggtgcggagacggaccgagagagacagcggaaggagtttccc-gggctgtgccgtcgctcacc B D Pika tcacccaggtgcggagacgg-tcgcaggagacggcggaaggagttttccggggccgcgctgtcgctcacc B D Human tcacccaggtggggagctagcctgaaagagacagcggaaggagtttcct-ggactgcgctgtcgctcacc B D Chimp tcacccaggtggggagctagcctgaaagagacagcggaaggagtttcct-ggactgcgctgtcgctcacc B D Bonobo tcacccaggtggggagctagcctgaaagagacagcggaaggagtttccc-ggactgcgctgtcgctcacc B D Gorilla tcacccaggtggggagctagcctgaaagagacagcggaaggagtttcct-ggactgcgctgtcgctcacc B D Rhesus tcacccaggtggggagccagcctgaaagagacagcggaaggagtttcct-ggactgcgctgtagctcacc B D Marmoset tcacccaggtggggggccagcctgaaagagatagcggaaggagtttcct-ggactgccctgccgctcacc B D Tarsier tcacccaggtggggagccagcctgagagagacggcggaaggagtttcct-ggactgcgctgtcgctcagc B D Bushbaby tcacccaggtggggagccagcccgaaagggacggcggaaggagtttccc-ggactgcgctgtcgctctcc B D Tree shrew tcacccaggtgcggagcaagcctga--gagacagcggaaggagttgccc-ggattgggctgtcgctcacg B D Malayan flying lemur tcactcaggtgcggagccagcctgaaggagacagcggaaggagtttctc-gaactgcgctgtcgctcacg B D Pig tcacccaggtgcagagcacgattgaaagagacagcggaaggactttccc-agactgtgctgtcgttcagc B D Dolphin tcacccaggtgctgagcaagattgaaagagacagcggaaggactttccc-ggactgtgctgtcgctcaac B D Cow tcacccaggtgcagagcgagattgagagagacagcggaagaactttccc-ggactgtgctgtcactcaac B D Sheep tcacccaggtgcagagcgagattgaaagagacagcggaagaactttccc-ggactgtgctgtcgctcaac B D Horse tcacccaggtgccgagcaggcttgaaagagtcagcggaaggac-ttacc-ggaccgcactgtcgctcact B D Chinese pangolin tcacccaggtgcggatcaatcttgaaagagacagcggaaggactttccc-ggactgcgttgtcgctcagc B D Dog tcacccaggtgcagagcaagcttgaaagagacagcggaagaactttccc-ggactgcactgtcgctcagc B D Hawaiian monk seal tcacccaggtgcagagcaagcttgaaagagacagcggaaggactttccc-ggactgcactgtcgctcagc B D Hedgehog tcacccaggtgcggggagagcctgccaaggacggcggaaggactttccc-cgacttcgctgtcgctcagc B D Shrew tcactcaggtgcggagccagcctgaaagagacagcggaaggactttccc-ggactacagtgtcgctcagc B D Elephant tcacccaggtgcagagcaagtctgaaagagacaacggaaggagcttccc-ggacagcgctgtcgctcaac B D Tenrec tcacccaggtgcagagcaa-tctgaaagagacaacggaaggagtttccc-ggcctgcgctgtcgctcaac B D Opossum taatccaggtgcggagctctcctaaaagagagaacggaaggagttaccg-ggattatactgtctgttacc B D Chicken --gaccaggtgctgagcacgtccgcgagaggcagcggaaag-gccgccg-gccccgcgctgtccgtcatc B D Zebrafish ====================================================================== B D X. tropicalis ====================================================================== Mouse g-gcctgcaccaattacaacgcagattgctcgcgggcccacctcttt-tgg-ggtgtgtcacaagtgagt Rat g-gcctgcaccaattacaacgcagattgcccgcgggcccacctcttt-tgg-ggtgtgtcacaagtgagt GCF_003668045 g-gcctgcaccaattacaacgcagattgccctcgggcccacctcttt-tgg-ggtgtgtcacaagtgagt Beaver g-gctcgcaccaatcaccacgcagtttgccctcgggcccgcctcttt-ggg-ggtgtgtccttaatgagt Squirrel g-aacgacaccaatcatcacgcagcttgccctcggaccctcctcttt-ggg-ggtgtgcccttagtgagt Guinea pig g-gcctgcaccaatcaccaagcagttcgccctcgggcccgcctcttt-agg-ggtgtgtccctagtgagt Rabbit g-tcgggcgccaatcaacacgcagttttctctcgggcccgcctcttt-ggggggcgtgtccctagtgagt Pika g-gcctgcaccaatcaacacgcggcgtgctgccgggcccgcctcttg-gggaggcgtgtcccccgtgagt Human g-acccgcaccaatcaccatgcagcttgccctcggacccgccccttt-tag-ggcgtgtccccagtgagt Chimp g-acccgcaccaatcaccatgcagcttgccctcggacccgccccttt-tag-ggcgtgtccccagtgagt Bonobo g-acccgcaccaatcaccatgcagcttgccctcggacccgccccttt-tag-ggcgtgtccccagtgagt Gorilla g-acccgcaccaatcaccatgcagcttgccctcggacccgccccttt-tag-ggcgtgtccccagtgagt Rhesus g-acccgcaccaatcaccacgcagcttgccctcggacccgccccttt-tag-ggcgtgtccccagtgagt Marmoset g-gcccgtaccaatcaccacgcagctcgccctcaggcccgcctcttt-gag-ggcgtgtccccagtgagt Tarsier g-gcccgcaccaaccaccacgcagcttgtcctcgggcccgcctcttt-ggg-ggcgtgtccacagtgagt Bushbaby g-gatcgcaccaatcaacacgcagcttgcgcttgggcccgcctcttt-ggg-ggcgcgtctctagtgagt Tree shrew a-ccctgctccaatcactacgctgcttgccctcaggcccgcctcttt-ggg-ggcgtgtccctagtgagt Malayan flying lemur g-ggccgcaccaatcagcacgcagtttgccctcgggtccgcctcttt-aga-ggcgtgtccctagtgagt Pig a-gactacaccaatcaccacgcagcttcctctcgggcccgcctctttgggg-ggcgtgtccctagtgagt Dolphin g-gaccaaaccaatcagcatgcagcttgccttcgggccctcctcttt--gg-ggcgtgtccctagtgagt Cow g-ggccaaaccaatcatcacgcaggttgcctccgggccctcctcttt-ggg-ggcgtgcccctagtgagt Sheep g-ggccaaaccaatcatcacgcaggttgcctccgggccctcctcttt-ggg-ggcgtccccctagtgagt Horse g-gcccgcaccaatcaccacgctgcttgtcctcggaccctcctcttt-ggg-ggcgtgaccctaatgagt Chinese pangolin g-gaaagcaccaatcaccacgcagcttgccctcggaccctcctcttt-ggg-ggcgtgtccctagtgagt Dog a-gcccgcaccaatcaccacgcagcttgacctcgggccctcctcttt-gag-ggcgtgtccctggtgagt Hawaiian monk seal g-gcccgcaccaatcaccacgcagcttgacctcgggccctcctcttt-gag-ggcgtgtccccagtgagt Hedgehog gcggccacaccaatcaccgcacggctggccctcggaccctcctctccgggg-ggcgtgtcgctcgtgagt Shrew a-ggtcacaccaatcggcgcacagtgtgccccagggccctcctcttt-gtg-ggcgtgtccctagtgagt Elephant g-actctcaccaatcgcagcacagagtgccctcgggcccgcctcttt-ggg-ggcgtgtccctagtgagt Tenrec g-gctcgtccctatcagcgcgcagattgccctggggcccgcctcttt-ggg-ggcgtgtccctagtgagt Opossum a-tctacagccaatctcaaagtcttcttctttgagtcccgcctcctt-ggg-ggtgggccactagtgatt Chicken t-cccgcggccactggcggggctgcagggccgccgggccgccccc---ggg-ggcggg---ctcgggagc Zebrafish ====================================================================== X. tropicalis ====================================================================== Mouse gatagactgagccgcccggccctgctcagcccagcccacgttgctgc-ttagattgaaatgcagaactca Rat gatagactgagccgcccggccctacacagcccagcccacgttgctgc-ttagattgaaatgcagaactca GCF_003668045 gatagactgagccgcccggccctgctcagcccagcccacgttgctgc-ttagattgaaatgcagaactca Beaver gatagacggagccgcccggccttgctcagcccagcccacgttgctgc-ttagattgaaatgcagaactca Squirrel gatagacggagccgcccggccctactcagcccagcccacgttactgc-ttagattgaaatgcagaactca Guinea pig gatagacagagcctcccggcccagctcagcccagcccacgttgctgc-tgagattgaaatgcagaactca Rabbit gatagacggagccgcccggccctgctcagcccagcccacgttgctgc-ttagattgaaatgcagaactca Pika gatagacggagccgcccggccctgctcagcccagcccacgccgctgc-ttagattgaaatgcagaactca Human gatagacggagccgccctgccctgctcagcccagcccacgttgctgc-ttagattgaaatgcagaactca Chimp gatagacggagccgccctgccctgctcagcccagcccacgttgctgc-ttagattgaaatgcagaactca Bonobo gatagacggagccgccctgccctgctcagcccagcccacgttgctgc-ttagattgaaatgcagaactca Gorilla gatagacggagccgccctgccctgctcagcccagcccacgttgctgc-ttagattgaaatgcagaactca Rhesus gatagactgagccgcccggccccgctcagcccagcccacgttgctgc-ttagattgaaatgcagaactca Marmoset gatagacggagccgcccggccctgctcagcccagcccacgttgcagc-ttagattgaaatgcagaactca Tarsier gatagacggagccgcccggccctgctcagcccagcccacgttgctgc-ttagattgaaatgcagaactca Bushbaby gatagactgagccgcccggccctgctcagcccagcccacgttgctgc-ttggattgaaatgcagagctca Tree shrew gatagacggagccgcccggcccagatcagcccagcccacgttgctgc-ttagattgaaatgcagaactca Malayan flying lemur gatagacggagccgcccggccctgctcagcccagcccacgttgctgc-ttagattgaaatgcagaactca Pig gatagacggagccgcccgg-cccgttcagcccagcccacgttgctgc-ttagattgaaatgcagaactca Dolphin gatagacggagccgcccggccccgctcagcccagcccacgttgctgc-ttagattgaaatgcagaactca Cow gatagacggagccgcccggccccgctcagcccagcccacgttgctgc-ttagattgaaatgcagaactca Sheep gatagacggagccgcccggccccgctcagcccagcccacgttgctgc-ttagattgaaatgcagaactca Horse gatagacggagtcgcccggccccgctcagcccagcccacgttgctgc-ttagattgaaatgcagaactca Chinese pangolin gatagacggagccgcccggcccagctcaggccagcccacgttgctgc-ttagattgaaatgcagaactca Dog gatagacggagccgcccggcccagctcgggccagcccacgttgctgc-ttagattgaaatgcagaactct Hawaiian monk seal gatagacggagccgcccggcccagctcaggccagcccacgttgctgc-ttagattgaaatgcagaactct Hedgehog gatagacggagccgcccggccccgcgcagcccagcccacgttgctgctttagattgaaatgcagaactca Shrew gatagacggagccgcccggccccactcagcccagcccacgttgctgc-ttagattgaaatgcagaactca Elephant gatagacggagccgcccggccccgctcgacccagcccacgttgctgc-ttagattgaaatgcagaactca Tenrec gatagcccgagccgcccggccccggtcaacccagcccacgttgctgc-ttagattgaaatgcagaactca Opossum gataggcagagacacccctcccaactcagcccagcccactttactgc-ttagattgaaatgcagaactca Chicken ggggggctgcggctcccggcccagcccggccctgcccacgttgcc-c-tgaggttgaaatgcagaactca Zebrafish ====================================================================== X. tropicalis ====================================================================== Mouse agcctctttcagcccggcacagacttccttttactctttcctttggca-- Rat agcctctttcagccgggcacagacttccttttactctttcctttggca-- GCF_003668045 agcctctttctggccggcacagacttccttttactctttcctttggca-- Beaver agtctctttcatcggggcacagacttccttttactccttccttttgca-- Squirrel agcctctttcatcagggcacagacttccttttactccttccttttgca-- Guinea pig agcctctttcatcggggcacagacttccttttactctttccttttgca-- Rabbit agcctctttcatcggggcacagacttccttttactccttccttttgca-- Pika agcctctttcatcggggcgcagacttccttttactccttccttttgca-- Human agcctctttcatcggggcacagacttccttttacttcttccttttgcc-- Chimp agcctctttcatcggggcacagacttccttttacttcttccttttgcc-- Bonobo agcctctttcatcggggcacagacttccttttacttcttccttttgcc-- Gorilla agcctctttcatcggggcacagacttccttttacttcttccttttgcc-- Rhesus cgtctctttcatcggggcacagacttccttttacttcttccttttgca-- Marmoset agcctctttcaccggggcacagacttccttttacttcttccttttgca-- Tarsier agcctccttcaaccgggcacagacttccttttactccttccttttgca-- Bushbaby agcctctttcatcggggcacagacttccttttactccttccttttgcc-- Tree shrew agcctctttcatcggggcacagacttccttctactccttccttttgca-- Malayan flying lemur agcctctttcatcggggcacagacttccttttactccttccttttgca-- Pig agcctctttcagcggagcacagacttccttttactccttccttttgca-- Dolphin agcctctttcatcggggcacagacttccttttactccttccttttgca-- Cow agcctctttcagcggggcacagacttccttttactccttccttttgca-- Sheep agcctctttcagcggggcacagacttccttttactccttccttttgca-- Horse agcctctttcatcggggcacagacttccttttactccttccttttgca-- Chinese pangolin agcctctttcatcagggcacagacttccttttactccttccttttgca-- Dog agcctctttcatcggggcacagacttccttttactccttccttctgct-- Hawaiian monk seal agcctctttcaacggggcacagacttccttttactccttccttctgca-- Hedgehog agcctctttcatcagggcacagacttccttttacttcttcctttagct-- Shrew agcctctttcatcggggcacagacttccttttactctttccttttgca-- Elephant agcctctttcatcccggcacagacttccttttactccttccttttgca-- Tenrec agcctctttcatccccgcacagacttccttttactccttccttttgca-- Opossum tacctctttcatcagggcacagacttccttttattcctttctctttaa-- Chicken aggctctctcgccgggaagtagatttcctcgtagtccttttttcctcgcc Zebrafish ================================================== X. tropicalis ================================================== Inserts between block 1 and 2 in window B D Opossum 1bp Alignment block 2 of 287 in window, 56742509 - 56742571, 63 bps B D Mouse ctcttgtcgcctcctcccgggaagaagccaaggcaccctcggc---------t-t-ggagcag------- B D Rat ctcttgtcgcctcctcccggggagaagccaaggcacccgcggc---------t-t-ggagcag------- GCF_003668045 ctctcgtcgcctcctcctggggagaagccgaggcagccgcgtc---------t-t-ggagcag------- Beaver ctcttgtcgcctcctcccggggagaagctgaggcaccagccac---------c-c-ggagcag------- B D Squirrel ctctcgcctcctcctcccggggagaagctgaggtaccagcaac---------c-c-ggagcag------- B D Guinea pig ctcgtgcctcctcctcccggggagaacctaagataccggcagc---------c-c-ggagcac------- B D Rabbit ctctcgccgcctcctcccggggagaagcggaggcaccggcggc---------c-c-ggggcag------- B D Pika ctcttgccgcctcctcccggggagaacccgaggccccggcggc---------cgc-gggacag------- B D Human ctctcgcctcctcctcctgggaagaagcggaggcgccggcggt------cggc-c-gggatag------- B D Chimp ctctcgcctcctcctcctgggaagaagcggaggggccggcggt------cggc-c-gggatag------- B D Bonobo ctctcgcctcctcctcctgggaagaagcggaggggccggcggt------cggc-c-gggatag------- B D Gorilla ctctcgcctcctcctcctgggaagaagcggaggcgccggcggt------cggc-c-gggatag------- B D Rhesus ctctcgcctcctcctcctgggaagaatcggaggcgccggcggt------ccgc-c-cgggtag------- B D Marmoset ctctcgcctccacctcctgggaagaagcggaggcgccggcggc---------t-c-ggggtag------- B D Tarsier ctctcgccgcctcctccggggaagacgcggaggcaccggcggt---------c-c-ggggtcg------- B D Bushbaby ctcttgcctcctcctcctgggaagaagcggaggcaccggcagc---------c-c-ggggtaa------- B D Tree shrew ctctcgccgcctcctcccggggagaagccgaggccccggcggc---------c-c-cgggcag------- B D Malayan flying lemur ctctcgccgcctccacccggggagaatcggaggcactcgcggc---------c-g-ggggcag------- B D Pig ctctcgccgcctcctcccggggagaagcggaggcagcgacagg---------c-c--------------- B D Dolphin ctctcgccgcctcctcccggggagaagcggaggcaccagcggc---------c-cggggggag------- B D Cow ctctcgccgcctcctccgggggagaagcggaggcaccggcggc---------c-c-ggggcag------- B D Sheep ctctcgccgcctcctcccggggagaagccgaggcaccggcggc---------c-c-ggggcag------- B D Horse ctctcgccgcctcctcctggggagaagcggaggcaccggcggc---------c-c-ggggcag------- B D Chinese pangolin ctctcgccgcctcctccaggggagaagccgaggcaccggcgac---------c-c-ggggcag------- B D Dog ctctcgccgcctcctcccgggaagaagcggaggcaccggcggt---------c-c-ggggcag------- B D Hawaiian monk seal ctctcgccgcctcctcccgggaagaagcggaggcaccggctgc---------c-c-ggggcag------- B D Hedgehog ctctcgccgcctcctcccgcggcgaagcgga------ggcggc---------c-g-gggacag------- B D Shrew ctctcgccgcctcctctcggggtgaagcggaggcaccggcggc---------c-c-agagctg------- B D Elephant ctctcgccgcctcctctcggggagaagcggaggcaccggcggc---------c-c-ggggcaa------- B D Tenrec ctctcgccgcctcctctcggggagaagcggaggcttcggcggc---------c-c-agggcaa------- B D Opossum ttctttctgtctgctcctgggatcaatcggagggacccgtggc---------c-a-gagctagaggagac B D Chicken cccctgctatctcctc--ggcggcaagcagggagcccggcgggcgagcgcggc-c-ggggcgg------- B D Zebrafish ====================================================================== B D X. tropicalis ====================================================================== Mouse cgacaggccgg Rat cgacaggccgg GCF_003668045 cgacaggtcgg Beaver cgacaggccgg Squirrel cgacaggtcgg Guinea pig cgacaagccgg Rabbit cgacaggccgg Pika agccaggccgg Human caacaggccgg Chimp caacaggccgg Bonobo caacaggccgg Gorilla caacaggccgg Rhesus caacaggccgg Marmoset caacaggccgg Tarsier cgacaggccgg Bushbaby ccacaggctgg Tree shrew cgacaggccgg Malayan flying lemur cgacaggccgg Pig ---------gg Dolphin cgacacaccgg Cow cagcacgacgg Sheep cagcacgacgg Horse cgacaggccgg Chinese pangolin cgacaggcctg Dog cggcaagccgg Hawaiian monk seal cgacaagccgg Hedgehog cggccggacgg Shrew cgatagaccgg Elephant ccataggccgg Tenrec ttataggccgg Opossum agaaatatcga Chicken cgggaggtcgg Zebrafish =========== X. tropicalis =========== Inserts between block 2 and 3 in window B D Chicken 15bp Alignment block 3 of 287 in window, 56742572 - 56742606, 35 bps B D Mouse ctcagtgagaacaaga---aaaaagtttctttctggga B D Rat cccagtgagagcaagg---aaaaagtttctttctggga GCF_003668045 cctagtgagagcaaga---gaaaagtttctttctggga Beaver gtcagtaagaccgtga---gaaaagtttctttctggga B D Squirrel gccactgaggccgtga---gaaaagtttttttctggga B D Guinea pig gccactgaggccagga---acaaagtttcttcctggca B D Rabbit gctaccgaggccgtgc---gtcaagtttctttctggaa B D Pika gctaccgaggccgtgcgaagcaaagtttctttctggaa B D Human gccactgaggcggtgc---ggaaagtttctgtctggga B D Chimp gccactgaggcggtgc---ggaaagtttctgtcttgga B D Bonobo gccactgaggcggtgc---ggaaagtttctgtcttgga B D Gorilla gccactgaggcggtgc---ggaaagtttctgtctggga B D Rhesus gccactgaggcggtgc---ggaaagtttctgtctggga B D Marmoset gccattgcggccctgc---ggaaagtttctgtctggtt B D Tarsier cccactaaggccgtga---gaaaagtttctttttggga B D Bushbaby gccactgaggccacgg---taaaagtttcttcctggga B D Tree shrew tccactgaggccgtgc---gaaaagtttctttctggga B D Malayan flying lemur gccactgaggccttgc---gaaaagtttctttctggaa B D Pig gccactgaggccacga---gaaaagtttctttctggga B D Dolphin gccactgaggccacgc---gaaaagcttctttctggga B D Cow gccactaaggccacac---gaagagtttctttctggga B D Sheep gccactaaggccacac---gaagagtttctttctggga B D Horse gccactgaggccgtga---gaaaagtttctctctggga B D Chinese pangolin gccactgaagcggggc---gaaaagtttctttctggga B D Dog gccactggggctgtgc---gaaaagtttctttttggga B D Hawaiian monk seal gccactgaggctgtgc---gaaaagtttctttttggga B D Hedgehog gccaccgaggccgcgc---agaaggtctctccctggga B D Shrew gtcactgaggccgagc---gaaaagtttctttctggga B D Elephant tccactgaggccgtgc---gaaaagtatctttctggga B D Tenrec tccactgaggccgtgc---gaaaagtttctttctggga B D Opossum agcactaaggagatag---cgaaaatttgttcttggaa B D Zebrafish ====================================== B D X. tropicalis ====================================== B D Chicken ====================================== Alignment block 4 of 287 in window, 56742607 - 56742842, 236 bps B D Mouse gtgcggaactgg---ggccgggttggtgt-actgctcagagcaatgggtgagtggctg----------at B D Rat gtgcggaactgg---ggccgggttggtgt-actgctcggagcaatgggtgagtgactg-----------c GCF_003668045 gtgcggaactgg---ggccgggttggtat-actgctcggagcaatgggtgagtggcgg-----------c Beaver gtgcggaactgg---ggcccggttggtgt-gctgctcggagcaatgggtgagtggcgg-----------c B D Squirrel gtgtggaactgg---ggcccggttggtgt-actgttcggagcaatgggtgagtggcgg-----------c B D Guinea pig gtgcagaactgg---ggccgggttggtgt-gctgctcggagcaatgggtgagtggctg-----------c B D Rabbit gtgcgg-gacag---ggccgggctggtgt-acggctcggagcaatgggtgagtggctg-----------c B D Pika gcgcag-cctag---ggccggcttggggt-acggctcggagcaatgggtgagtggctg-----------c B D Human gtgcggaactgg---ggccgggttggtgt-actgctcggagcaatgggtgagtggcgg-----------c B D Chimp gtgcggaactgg---ggccgggttggtgt-actgctcggagcaatgggtgagtggcgg-----------c B D Bonobo gtgcggaactgg---ggccgggttggtgt-actgctcggagcaatgggtgagtggcgg-----------c B D Gorilla gtgcggaactgg---ggccgggttggtgt-actgctcggagcaatgggtgagtggcgg-----------c B D Rhesus gtgcggaactgg---ggccgggttggtgt-actgctcggagcaatgggtgagtggcgg-----------c B D Marmoset gtgcggaactgg---ggccgggttggtgt-actgctcggagcaatgggtgagtggcgg-----------t B D Tarsier gtgcggaactgg---ggccgggttggtgt-actgctcggagcaatgggtgagtggcgg-----------c B D Bushbaby gtgcggaactgg---ggcccagttggtgt-actgctcggagcaatgggtgagtggcgg-----------c B D Tree shrew gtgtggaactgg---agccgggttggtgt-actgctcggagcaatgggtgagtggcgg-----------c B D Malayan flying lemur ctgcggaactgg---ggcccggctggtgt-actgctcggagcaatgggtgagtggcgg-----------c B D Pig gtgtggagcttg---ggccccgttggtgt-actgctcggagcaatgggtgagtggtgg-----------c B D Dolphin gtgcggagctgg---ggcccggttggtgt-actgctcggagcaatgggtgagtggcgg-----------c B D Cow gcgcggaactgg---ggcccggttggtgt-actgctcggagcaatgggtgagtggcgg-----------c B D Sheep gtgcggaactgg---ggcccggttggtgt-actgctcggagcaatgggtgagtggcgg-----------c B D Horse gtgcggaactgg---ggcccggtcggtgt-actgctcggagcaatgggtgagtggcgg-----------c B D Chinese pangolin gtgcggaactgg---ggcccggttggtgt-actgctcggagcaatgggtgagtggcgg-----------c B D Dog gttcggaactgg---ggcccctttggtgt-actgctcggagcaatgggtgagtggcgg-----------c B D Hawaiian monk seal gctcggaactgg---ggccccgttggtgt-atagctcggagcaatgggtgagtggcgg-----------c B D Hedgehog gcgcggagccgg---ggcgcggcgggtgt-cctgcccggagcgatgggtgagcggcgg-----------c B D Shrew gtgtcgaactgg---ggccccgtggctgt-actgctcggagcaatgggtgagtggcgg-----------c B D Elephant gaacggaacagg---ggcccggttggtgt-actgctcggagcaatgggtgagtggcgg-----------c B D Tenrec gaacagaactgg---agcccggttggtgt-actgcttggagcaatgggtgagtggcgg-----------c B D Opossum ttctagagtc-------tcttattggtgtccccgctcaaagcaatgggtaagtggttgcctgttgtatcc B D Chicken gtggggatttagggcggccccggaggtgt-cccgctcggaggaatgggtgagtgctgg-------gatcc B D Zebrafish ====================================================================== B D X. tropicalis ====================================================================== Mouse ggggg-a-------cgt-tgtc-agatccg-------a-------------------------------- Rat ggggg-a-------cgt-tgtc-agaaccg-------a-------------------------------- GCF_003668045 gggga-a-------cgc-tgtc-agaaccg-------a-------------------------------- Beaver ggggg-a-------cgc-tgtc-agaaccg-------a-------------------------------- Squirrel ggggg-a-------cgc-tgtc-agaaccg-------a-------------------------------- Guinea pig ggggg-c-------tgc-tgtc-agagccg-------g-------------------------------- Rabbit ggggg-c-------cgc-tgtc-agagcgg-------c-------------------------------- Pika gggggcc-------cgc-tgtcaagagcgg-------c-------------------------------- Human ggggg-a-------ctc-tgtc-agagccg-------g-------------------------------- Chimp gggag-a-------ctc-tgtc-agagccg-------g-------------------------------- Bonobo ggggg-a-------ctc-tgtc-agagccg-------g-------------------------------- Gorilla ggggg-a-------ccc-tgtc-agagccg-------g-------------------------------- Rhesus ggggg-a-------ctc-tgtc-agagccg-------g-------------------------------- Marmoset ggaag-a---------c-tgtc-ggagccg-------c-------------------------------- Tarsier ggggg-a-------cac-tgtc-agagccg-------g-------------------------------- Bushbaby gggcg-a-------ctc-tgtc-aaagccg-------t-------------------------------- Tree shrew ggggg-a-------cgc-tgtc-agagcgg-------a-------------------------------- Malayan flying lemur ggggg-a-------cgc-tgtc-agagccg-------a-------------------------------- Pig ggggg-a-------cgcttgac-agagcct-------g-------------------------------- Dolphin ggggg-a-------cgc-tgtc-agaaccg-------g-------------------------------- Cow agggt-a-------cgc-tgtc-agagccg-------g-------------------------------- Sheep ggggt-a-------cgc-tgtc-agagccg-------g-------------------------------- Horse ggggg-a-------cgc-tgtc-agagtcg-------g-------------------------------- Chinese pangolin ggggg-a-------cgc-tgtc-agagctg-------t-------------------------------- Dog gggga-a-------cgc-tgtc-agagccg-------g-------------------------------- Hawaiian monk seal ggggg-a-------cgc-tgtc-agagccg-------g-------------------------------- Hedgehog gaggg-c-------ggc-tgtc-agcgcc----------------------------------------- Shrew gggga-c--------gc-tgtc-agcgccg-------g-------------------------------- Elephant gaggg-a-------cgc-tgtc-agagccggggaggag-------------------------------- Tenrec ggggg-a-------cgc-tgtc-agagccg-------g-------------------------------- Opossum gcgaa-atattcagtgc-tgtc-agactgg-------gtgtggggaaaaagtggcggggggtggggggga Chicken gcggg-g-------ggc-tgtc---------------a-------------------------------- Zebrafish ====================================================================== X. tropicalis ====================================================================== Mouse ------------------------------ggagggagggagcga------------------------- Rat ------------------------------ggagggagggagcga------------------------- GCF_003668045 ------------------------------ggagggagggagtga------------------------- Beaver ----------------------ga----agggagggagggagcga------------------------- Squirrel ----------------------gaagggagggagggagggagcga------------------------- Guinea pig ------------------------------agagggagggagcgg------------------------- Rabbit ------------------------------ggcgg----------------------------------- Pika ------------------------------ggagggagggaggga------------------------- Human ----------------------gaag----ggagggagggagcga------------------------- Chimp ----------------------gaag----ggagggagggagcga------------------------- Bonobo ----------------------gaag----ggagggagggagcga------------------------- Gorilla ----------------------gaag----ggagggagggagcga------------------------- Rhesus ----------------------gaag----ggagggagggagcga------------------------- Marmoset ----------------------gaag----ggagggagggagcga------------------------- Tarsier ----------------------caag----ggagggcgggagcgg------------------------- Bushbaby ----------------------gaag----ggagggagggagcga------------------------- Tree shrew ----------------------gaag-----gagggagggagcga------------------------- Malayan flying lemur ----------------------gaag----agagggagggagcga------------------------- Pig ----------------------gaag----ggagggagggagcaa------------------------- Dolphin ----------------------gaag----ggagggagggagcga------------------------- Cow ----------------------gaaa----ggagggagggagcga------------------------- Sheep ----------------------gaag----ggagggagggagcga------------------------- Horse ----------------------caag----ggagggagg----ga------------------------- Chinese pangolin ----------------------gaag----ggagggagggagcga------------------------- Dog ----------------------ggag----ggagggagggaagga------------------------- Hawaiian monk seal ----------------------gaag----ggagggagcgaacca------------------------- Hedgehog -------------------------g----ggcgggagggaggga------------------------- Shrew ----------------------gaag----ggagggagggagaga------------------------- Elephant ----------------------ggag----ggagggagggagcgagcgagcgagcgagcgagcgggcggg Tenrec ----------------------gcag----ggagggagggagcga------------------------- Opossum ggagagaatgagaagagggggagaga----ggagagagagagaga------------------------- Chicken ------------------------------agagagagggagccc------------------------- Zebrafish ====================================================================== X. tropicalis ====================================================================== Mouse ---gcaggcg--------agggctagagggaggga--------gctgaggcg------------------ Rat ---gcaggcg--------agggctagagggaggga--------gctgaggcg------------------ GCF_003668045 ---gcaggcg--------agggcgagagggaggga--------gctggggcg------------------ Beaver ---gcgggcg--------agggagggagggaggga----gagcgagggcgcg------------------ Squirrel ---gcgggcg--------agggagggagggaggga----gtgcgagggcgcg------------------ Guinea pig ---gcgagcg--------ggcgggcgcgcgagggc----gcgctcggaggag------------------ Rabbit ---acgggcg--------ttccgctgattgacttt----gctcg-------------------------- Pika ---gcgggcg--------ggccagggcgggagggc----gcccgcagaggcg------------------ Human ---gcgggca----agggagggagggagggaggga----gcgcgagggcgcg------------------ Chimp ---gcgggca--------agggagggagggaggga----gcgcgagggcgcg------------------ Bonobo ---gcgggca--------agggagggagggaggga----gcgcgagggcgcg------------------ Gorilla ---gcgggca--------agggagggagggaggga----gcgcgagggcgcg------------------ Rhesus ---gcgggcg----agggagggagggagggaggga----gtgcgagggcgcg------------------ Marmoset ---gcgagag--------agggagggagggaggga----gcgagagggcgcg------------------ Tarsier ---gcgtgcgtgcgggcgggcgagggagggaggga----gcgagagggcgcg------------------ Bushbaby ---gcgggcg------------agggagggagggc----gcgcaagggcgcg------------------ Tree shrew ---gcgg------------gagagggagggaggga----gcgcgagggcgcg------------------ Malayan flying lemur ---gcgggctaggaagggagggagggagggaggga----gcgcaagggcgcg------------------ Pig ---gcgggcg--------agggagggagg--------------gagggcacg------------------ Dolphin ---gcgggcg--------agggagggagggagggc----gcgcgagggcgcg------------------ Cow ---gcgggcg--------agggagggagg--------------gagggcgcg------------------ Sheep ---gcgggcg--------agggagggagg--------------gagggcgcg------------------ Horse ---gcgagct--------ggcgagggagggaggga----gcgcgagggcgcg------------------ Chinese pangolin ---gcgagcg--------agcgagggagggaggga----gagcaagggcgcg------------------ Dog ---gaaggcg--------agggagggagggaggga----gcgcgagggcgcg------------------ Hawaiian monk seal ---gagggcg--------agggaggaagggaggga----gcgcgagggcgcg------------------ Hedgehog ---gcgggcg--------ggaggcggaggg--------------agggcgcg------------------ Shrew ---gcgggcg--------agggagggaggga--------gcgccagggcgcg------------------ Elephant cgggcgggcg--------cgggagggagggagggctcgggcgcgagggcgcg------------------ Tenrec ---gcggtcg--------cgagaaaggagggaggcgcgggcgcgagggcgcg------------------ Opossum ---gagagag--------agagagagagagagaga----gagagagagagagagagagagagagagagag Chicken --------cg--------tgc------------------ccgcgccgtcatg------------------ Zebrafish ====================================================================== X. tropicalis ====================================================================== Mouse -----------------------------------cgccaccgcgctg------------tattgactca Rat -----------------------------------cgccaccgcgctc------------tattgactca GCF_003668045 -----------------------------------cgcaaccgcgctc------------tattgactca Beaver -----------------------------------cgccactgagcgcttacactctccttattgacttt Squirrel -----------------------------------cgccactgagcgctcacactctccttattgacttt Guinea pig -----------------------------------cgcgctcg-gctc----------cgtgttgacttt Rabbit ---------------------------------------------------------------------- Pika -----------------------------------c---------------------------------- Human -----------------------------------cgccactaggcgctcacattctc--tattgacttt Chimp -----------------------------------cgccactaggcgctcacattctc--tattgacttt Bonobo -----------------------------------cgccactaggcgctcacattctc--tattgacttt Gorilla -----------------------------------cgccactaagcgctcacattctc--tattgacttt Rhesus -----------------------------------cgccactaggcgctcacattctc--tattgacttt Marmoset -----------------------------------cgccactaagcgctcacattttc--tattgacttt Tarsier -----------------------------------cgccactaagcgctcacactctccttattgacttt Bushbaby -----------------------------------cgccactaagggctcgcactcttcttattgacttt Tree shrew -----------------------------------cgccaccgagcgctcacactctccttattgacttt Malayan flying lemur -----------------------------------cgccactgagcgctcacactctccgtattgacttt Pig -----------------------------------cagcacagagcgcttacattctccttattgacttt Dolphin -----------------------------------caccactgagcgcttacactctccttattgacttt Cow -----------------------------------caccactgagcgctcacactctccttattgacttt Sheep -----------------------------------caccactgagcgctcacactctccttattgacttt Horse -----------------------------------cactactgagcgctcgcactctccttattgacttt Chinese pangolin -----------------------------------caccactgagcgctcatactctccttattgacttt Dog -----------------------------------caccgctgagcgctcacactcttcttattgacttt Hawaiian monk seal -----------------------------------caccactgagcgctcacactcttcttattgacttt Hedgehog -----------------------------------cacccctgagcgctcacacgctccttattgacttt Shrew -----------------------------------caccactgagcgctcgcactttacttattgacttt Elephant -----------------------------------caccactgagcgctcaaactctccttattgacttt Tenrec -----------------------------------cgccactgggcgctcgcaccctccttattgacttt Opossum agagagagagagagagagagagagagagagagatttgttgccggagagtcacaacttgcttattgacttt Chicken -----------------------------------tgccaccgcg---------gctccttattgacttt Zebrafish ====================================================================== X. tropicalis ====================================================================== Mouse gactgcgtccgt-cgagctg-taagcaccctccaagggtcagtggcg-gaaagggttct--gtgag-a-- Rat gaccgcgtccctacgagttg-tatgcacacgccaagggtcagcggct-aaaagggtgct--gtggg-a-- GCF_003668045 gaccgcgtccccaagagctg-tacgagcatgccaagggtcagcggcg-acaggggtgca--atggg-aac Beaver gctcgtgttcctacaagttg-taggaacacgctaagggtcagcggcgcacagcagttca--atctg-atc Squirrel gctcgtgttcctacaagttg-taggaacacgctaagggtcagcgacgcacagcagttca--atccg-aac Guinea pig gctcttgttcctacaagttg-aaggaactggccaagggtcagaggcttgcggtggttcc--gtgcg-aac Rabbit ------gttactgctgggtg-taggactgcgccaagggccagcggcgcacggcggtccg--gtgtg-cgc Pika --ccccgctcccgctgag-----ggacttgggtgggttcctaccacgcgtcccgggac------tg-cgc Human gctcgtgttcctacaagttg-taggaacacgctaagggtcagcggcgcacagcagttca--atgtg-aac Chimp gctcgtgttcctacaagttg-tagaaacacgctaagggtcagcggcgcacagcagttca--atgtg-aac Bonobo gctcgtgttcctacaagttg-tagaaacacgctaagggtcagcggcgcacagcagttca--atgtg-aac Gorilla gctcgtgttcctacaagttg-taggaacacgctaagggtcagcggcgcacagcagttca--atgtg-aac Rhesus gctcgtgttcctacaagttg-taggaacacgctaagggtcagcggcgcacagcagttca--acgtg-aac Marmoset gctcgtgttcctacaagttg-taggaacacgctaagggtcagcggcgcacaggagttca--atgtg-aac Tarsier gctcgtgttcctacaagttg-taggagcacgctaagggtcagcggcgcatagcagttcc--gtctg-aac Bushbaby gctcgtgttcctacaagttg-taggaacacgctaagggtcaacggcgcatagcagttca--gtctg-aat Tree shrew gctcgtgttcgtacaagttg-taggaacacgctgagggtcagcggcgcacagcagttca--gcctg-aac Malayan flying lemur gctcgtgttcctacaagttg-taggaacacgctaagggtcagcggcgc---gcggttca--gtctg-aat Pig gttcatgttcctacaagttg-taggaacactctaagggtcagcggcgcacagcagttcc--gtctg-aac Dolphin gctcgtgttcctacaacttg-taggaacacgctaagggtcagcgacgcacagcagctca--gtctg-aac Cow gctcatgttcctacaagttg-taggaacacgctaagggtcagcggctcgcagctgttca--gtctg-aac Sheep gctcgtgttcctacaagttg-tgggaacacgctaagggtcagcggctcgcagcagttca--gtctg-aac Horse gctcgtgttcatacaagttg-tagg-acccgctaagggtcggcgtcgcacagcagttca--gtctg-aac Chinese pangolin gctcgcgttcctacaagttg-taggaacacgccaagggtcatcggcatacagcagttca--gtctgaaac Dog gctcgtgttcctacaagttgttaggaacgcgctaagggtcag-ggcgcacggcagttcagtgtgtg-aac Hawaiian monk seal gctcgtgttcctacaagttgttagaaacacgctaagggtcag-ggcacacagcagttca--gtatg-aac Hedgehog gctcgtgttcctacacgttg-tagcaacacgccaagggtcagcggcgcacggcagctgc--gtctg-cac Shrew gctcgtgttcctacaagttg-taggaacacgctaagggtcagtggcgcgcagcagttca--gtctg---- Elephant gttcgtgttcctacaaatag-taggaacgctctaagggtcagcggtgcacagcagttca--ttctg-att Tenrec gctcgagttccttcaagttg-tgggaacacgttaagggtcagcggtgcacagcagttct--ttctg-atc Opossum gctcatgtttctacaagttg-taacaatgagttaaaggtcaacagtacagagtagagag--atcta-atg Chicken actcgtgtttctacacgtcg-ggacagcgcgccgaggggcag-agcggggaggaggaaa--agcta-a-- Zebrafish ====================================================================== X. tropicalis ====================================================================== Mouse ----gcca--------ctgggtg-acaa---tt-gatgccat-t Rat ----gcta--------ccgagtg-gcag---tt-gatgccat-t GCF_003668045 tcccgcta--------cagggtg-gcag---tt-aatgccag-g Beaver gctggcta--------ctgggtt-gctg---tt-gatgccat-t Squirrel gctggcta--------ctgggtt-tctg---tt-ggtgccat-t Guinea pig gctggcta--------ctgggtt-gctg---tt-gatgccat-t Rabbit gccggctg--------ctgggct-gctg---tt-gatgcgggag Pika gcctgcta--------ccggggtggctg---tg-gatgccccgt Human gctggcta--------ctgggtg-gctg---tt-gatgccat-t Chimp gctggcta--------ctgggtg-gctg---tt-gatgccat-t Bonobo gctggcta--------ctgggtg-gctg---tt-gatgccat-t Gorilla gctggcta--------ctgggtg-gctg---tt-gatgccat-t Rhesus gctggcta--------ctgggtg-gctg---tt-gatgccat-t Marmoset gctggcta--------ctggctg-gcta---tt-gatgccat-t Tarsier gtgggcta--------ccgggct-gcgg---tt-gatgccat-t Bushbaby actggcta--------ctgggtc-actg---tt-gatgctat-t Tree shrew tctggcta--------ccgggtt-gctg---tt-gatgccat-t Malayan flying lemur ggtagctg--------ctgggtg-gctg---ct-gatgccat-t Pig gatggcta--------ctggggt-gctgctttt-gatgccat-t Dolphin gcgggcta--------ctgggtt-gctgctgtt-gatgccat-t Cow gctggcta--------ctgggtt-gctgctgtt-gatgccat-t Sheep gctggcta--------ctgggtt-gctgctgtt-gatgccat-t Horse gctggctc--------ctgggtt-gctg---tt-catgccat-t Chinese pangolin actggcta--------ctgggct-gctg---gc-gatgccat-t Dog gctggcta--------ctgggtt-gctg---tt-gatgccat-t Hawaiian monk seal gctggcta--------ctgggtt-gctg---tt-gatgccat-t Hedgehog cctggctacctacagcctg-----gctg---ct-gatgcccc-t Shrew -attgcta--------ctg-----gcta---ctaggtgccgt-t Elephant gctggttg--------ctgcgtt-gttg---tt-gatgccgt-t Tenrec tccggtag--------ctgggtt-ctta---tc-gatgccat-t Opossum ggtgg-----------ctgagtg-atta---tt-aaagcaat-t Chicken --tgactg--------ctcggtttatta---tt-aatgttat-t Zebrafish ============================================ X. tropicalis ============================================ Inserts between block 4 and 5 in window B D Opossum 189bp Alignment block 5 of 287 in window, 56742843 - 56742890, 48 bps B D Mouse ttgcga-ttt--aagggaagagggccgtggcatt-ggcgaatctcgc-ag----ctc B D Rat tcccga-ttt-taacagacgagggccgtggcact-ggcgagtctctc-aa----ccc GCF_003668045 ttttga-ttt-taa-----gagggccatggcacg-ggagagtcccgc-ag----ctc Beaver ttctga-tttttaagagaagggagccgaggcatc-agcgagccccgcaaa----ctc B D Squirrel ttctga-ttt-taagagaaaggagctgtggcatt-ggcgagctctac-ag----ctc B D Guinea pig ttctga-ttt-tgagaaaaggcagctgtggcatc-agcgagccccgc-ag----ctc B D Rabbit tcctga-ttt-taa--acagcgcagcgtggcatc-agagagccccgc-ag----ccc B D Pika gcccg------------------ggcgtggcatc-gcagagtccccc-agtgccccc B D Human ttctga-ttt-taagagaagggagctgtggcatc-agcgagcccctc-ag----ccc B D Chimp ttctga-ttt-taagagaagggagctgtggcatc-agcgagcccctc-ag----ccc B D Bonobo ttctga-ttt-taagagaagggagctgtggcatc-agcgagcccctc-ag----ccc B D Gorilla ttctga-ttt-taagagaagggagctgtggcatc-agcgagcccctc-ag----cgc B D Rhesus ttctga-ttt-taagagaagggagctgtggcatc-agc--gccccgc-ag----ccc B D Marmoset ttctga-ttt-taagagaagggaactatggcatc-agcaagccccgc-ag----ccc B D Tarsier ttctga-ttt-taagaggagggggctgcggcgtc-agcgagccccgc-ag----ccc B D Bushbaby ttctga-ttt-taagagaagggagctgtgccatc-agcgagcgccac-ag----ccc B D Tree shrew ttctgatttt-taagaggcgggagctgaggctgc-agtgaa-cccgc-ag----ccc B D Malayan flying lemur ttctga-ttt-taagagaagggagttatggcatc-agcgagccccgc-ag----ccc B D Pig ttctga-ttt-caagaggagggagccaaggcatc-agcaacccccgc-ag----cgc B D Dolphin ttctga-ttt-caagagtagggagaggttgcatc-agcaagccccgc-gg----tcc B D Cow ttttga-ttt-caagactagggagcggtggcatc-agcaagccccgc--g----ccc B D Sheep ttctga-ttt-caagactagggagcggtggcatc-agcaagccccgc--g----ccc B D Horse ttctga-ttt-taggagaatagaggggtggcatc-ggcaagccctcc-ag----ccc B D Chinese pangolin ttctga-ttt-taagagaagggagaggtagcatcaagcaagccctgc-ag----tcc B D Dog ttctga-tct-taaaacaagggagcggtggcatc-agcaagccctgt-ag----cct B D Hawaiian monk seal ttctga-tat-taaaggaagagagcggtggcatc-agcaagctccgt-ag----cct B D Hedgehog t--------t-ggagaggagggagtggtggcatc-agcaggtcccgc-gg----ccc B D Shrew t--------t-tccgagaagtgagcgctggcatt-agcaagccccgc-gg----ccc B D Elephant ttctga-ttt-taagaggaaggagctgtggtatc-agcgagccccgc-aa----ccc B D Tenrec ttctga-ttt-taagagaagggagctgtggcatt-accgagtccccc-aa----ccc B D Chicken atgcga-ccg-tgaggca---gaatcgcagcaga-atggatggccgc-ag----ccc B D Zebrafish ========================================================= B D X. tropicalis ========================================================= B D Opossum ========================================================= Inserts between block 5 and 6 in window B D Chicken 630bp Alignment block 6 of 287 in window, 56742891 - 56743019, 129 bps B D Mouse cagtgtcaat-cca---agttttgttgca----cacgtgtttacac------tt--------gc------ B D Rat cagtgtcaat-cca---agttttgttgca----cacgtgtttacac------tt--------gc------ GCF_003668045 cagtgtcaat-cca---agttttgttgca----cacgtgtttacac------at--------gc------ Beaver cagtggcatt-tca---agttttgt--------------ttcactc------ac--------gc------ B D Squirrel cagtggaaac-cca---agttttgt--------------tttacac------ac--------gc------ B D Guinea pig caggagcaat-ccc---aatttcatttca----cacacacacacac------ac--------ac------ B D Rabbit cggtggcaat-cca---agccgtgtttcc----cacgcgcgcacgc------acggacgctcgc------ B D Pika ggggggccac-ccg---aggtgtgtttcg----cttgcgcgcacacaagccaacgaa-----gc------ B D Human gagtagcaaa-cca---agttttgtttca----cacgcgcgcacac------at--------gc------ B D Chimp gagtagcaaa-cca---agttttgtttca----cacgcgcgcacac------at--------gc------ B D Bonobo gagtagcaaa-cca---agttttgtttca----cacgcgcgcacac------at--------gc------ B D Gorilla gagtagcaaa-cca---agttttgtttca----cacgcgcgcacac------at--------gc------ B D Rhesus cagtagcaaa-cca---agttttgtttca----cacgcgcgcacac------ac--------gc------ B D Marmoset ccgtagcaaa-cca---agttttgcttca----cacgcgcgcatac------ac--------ac------ B D Tarsier cagtagcaaa-cca---agttttgtttcg----cacgcgcgcacac------at--------gc------ B D Bushbaby cagtagcaaa-cca---agttttgtttca----cagacgctcacgc------at--------gc------ B D Tree shrew tggtagcaaa-ctactggggtttgtttct----cctacgcgcacac------ac--------gc------ B D Malayan flying lemur cagtagcaaa-cca---agttttgttccg----tacacgcgcacac------ac--------tc------ B D Pig cagtggcgga-cca---aattttgtttta----cacacaggcagac------ac--------gcagaaaa B D Dolphin cagttgcgga-cca---aattttgtttca----catacacgcagac------ac--------gggg---- B D Cow cggtggcgga-cca---aattttgtttcg----cgtaca------------------------------- B D Sheep cggt-gcgga-cca---aatt------------------------------------------------- B D Horse tagaggcgga-cca---agttttgtttca-atacacacacacacgc------------------------ B D Chinese pangolin cagtggcggg-cca---ggttttgtttcatctacacgcagacacac------------------------ B D Dog cggtggcgga-cca---agttttgtttca----cataaactcacac------a----------------- B D Hawaiian monk seal cagt-gcgga-cca---agttttgtttca----cacaaactcacgc------------------------ B D Hedgehog caatgagggatcga---tttttttattct----cgtgtccgctcac------cc--------gc------ B D Shrew cagcgacg---cca---aattttgtttca----catactcgtccac------ac--------gg------ B D Elephant cagtggcaga-cta---agttttgtttca------------cacac------ac--------gc------ B D Tenrec cagtggcaga-cca---agttttgtttca------------gacac------at--------gt------ B D Zebrafish ====================================================================== B D X. tropicalis ====================================================================== B D Opossum ====================================================================== B D Chicken ====================================================================== Mouse -----aagcaaaa---------cagaac---------------------aaa--------aac------- Rat -----aagcaaaa---------cagaac---------------------aaa--------aac------- GCF_003668045 -----aaacaaaa---------cagaac---------------------aaa--------aac------- Beaver -----aaagagaa---------cagaaa---------------------aaa--------aaa------- Squirrel -----acacacac---------gcaaac---------------------aaa--------aac------- Guinea pig -----acacacac---------acacac---------------------aca--------cac------- Rabbit -----aaacaaaa---------cagcca---------------------a-a--------aca------- Pika -----agaacaaa---------cagaca---------------------aga--------acc------- Human -----aaacaaaa---------caggaa---------------------aag--------aaaagaaaag Chimp -----aaacaaaa---------cag--------------------------g--------aaaagaaaag Bonobo -----aaacaaaa---------caggaa---------------------aag--------aaaagaaaag Gorilla -----aaacaaaa---------caggaa---------------------aag--------aaaagaaaag Rhesus -----aaacaaaa---------caggaa---------------------aac--------aaaacaaaac Marmoset -----aaacaaaa---------cagg-----------------------------------agggaaaaa Tarsier -----aaaccaaa---------cagg------------------------------------aggaggga Bushbaby -----aaacaaaa---------cagaaa---------------------aaa--------aagagagaaa Tree shrew -----aaacaaaa---------caggaa------------------------------------------ Malayan flying lemur -----agacaaaa---------caacaa---------------------ca------------------- Pig caaccaaacaaaaaaacccaaccagaaa---------------------aaa--------aga------- Dolphin -cggggggtaaaaaacgccaaccagaaa---------------------aaa--------aga------- Cow -cagggtacaaaagccaaccaagaaaaa---------------------aaa--------aga------- Sheep -----aaacaaaaaaaaaaaaaaaaaaa---------------------aaa--------aga------- Horse -----aaacaaaa---------cagaaa---------------------aaa--------aac------- Chinese pangolin -----aaacgaaa---------cagaaa---------------------aat--------acc------- Dog -----actcagaa---------caggaaaaaaccaaaccaaaccaaaacaaa--------aca----acc Hawaiian monk seal -----actcagaa---------caggaa---------------------aaa--------aaa----tcc Hedgehog -----aaactcaa---------cagcgg---------------------tgggggaaaaagaa------- Shrew -----caacaaaa---------cggagg---------------------agg--------gaa------- Elephant -----agacaaaa---------cagaaa---------------------aa------------------- Tenrec -----aaacaaaa---------caaaac---------------------aaa--------aca------- Zebrafish ====================================================================== X. tropicalis ====================================================================== Opossum ====================================================================== Chicken ====================================================================== Mouse --accc------------------ccc-ccccagctt--------------tctctgg------actgc- Rat --accc------------------cccgccccagttt--------------tccctag------gctgc- GCF_003668045 aaaaca------------------acc-cctcagctt--------------tccctga------actcc- Beaver aaat------------------------ctctagctt--------------cccctag------acgtt- Squirrel --------------------------t-ttccagctt--------------cccctag------acttt- Guinea pig --accc------------gaaaaactc-ctccaggctaacaacagcgcgcatctcggg------acgca- Rabbit --acaa--------------------c-cccaaactc--------------tctctagctttgccctacg Pika --acta------------tcacccccc-cccaaactc--------------tccctcg------cccac- Human aaaacaaacaacaacaaataaaacacc-ctctagctt--------------cccctag------acttt- Chimp aaaacaaacaacaacaaataaaacacc-ctctagctt--------------cccctag------acttt- Bonobo aaaacaaacaacaacaaataaaacacc-ctctagctt--------------cccctag------acttt- Gorilla aaaaca---aacaacaaataaaacacc-ctctagctt--------------cccctag------acttt- Rhesus aaaacaaacaacaac-aacaacacacc-ctctagctt--------------cccctag------acttt- Marmoset aaagca--------------------c-ctctagctt--------------ctcctag------acttt- Tarsier aaaacaatc-----------------c-cttcagctt--------------cccctag------acttt- Bushbaby aaaatc--------------------c-ctctagctt--------------cccctag------acttt- Tree shrew --aatc--------------------c-ctctagctt--------------ccctgga------ct--t- Malayan flying lemur acaaga--------------------t-cttcagctt--------------cccctag------gc--t- Pig ------------------------------------------------------ctag------atctt- Dolphin ------------------------------------------------------ctag------acttt- Cow ------------------------------------------------------ctag------acttt- Sheep ------------------------------------------------------ctag------acttt- Horse ----------------------------ctgtggttt--------------tccctgg------ccctt- Chinese pangolin -------------------------------tagttt--------------cccctag------aactt- Dog aaacca--------------------a-ccgtagttt--------------ctcctag------acctt- Hawaiian monk seal aaacca--------------------a-ctgtagttt--------------ctcctag------acctt- Hedgehog --gtac--------------------c-cggtagtta--------------cgtccag------acctt- Shrew --ctcc--------------------c-cagtagttt--------------ccccaag------atctt- Elephant --------------------------t-ctctagctt--------------ctcctag------acctt- Tenrec -aaaat--------------------t-ctctagctt-----------------ctag------accta- Zebrafish ====================================================================== X. tropicalis ====================================================================== Opossum ====================================================================== Chicken ====================================================================== Mouse ----g---tctaaccccgca-ga----agggagggg---------taagg-------------------c Rat ----g---tctaacccctct-ga----agggagggg---------taagg-------------------c GCF_003668045 ----g---tctaatagcgct-gg----ggggagggg--------ataaga-------------------a Beaver ----g---tctaatcccgcg-ggtctccgggagcggcgctggggatgaga-------------------c Squirrel ----g-----------cgcg-ggtctccgggagcggcgctggtgacgagt-------------------t Guinea pig ----gcgatggagaccgggt-ggtggtggagaggagaggagaggagagga-------------------g Rabbit cttgg---tccagctgcgcg-ggtcttcgggcggggcgcgggggaggggg-------------------c Pika --cgg---acca-ccgcgcg-ggtctccgggacgggcgccggggagag---------------------- Human ----g---tttaactggccg-ggtctccagaaggaacgctggggatggga-------------------t Chimp ----g---tttaactggccg-ggtctccagaaggaacgctggggatggga-------------------t Bonobo ----g---tttaactggccg-ggtctccagaaggaacgctggggatggga-------------------t Gorilla ----g---tttaactggccg-ggtctccagaaggaacgctggggatggga-------------------t Rhesus ----g---tttaactgcccg-ggtctccagaaggaaagctggggatggga-------------------t Marmoset ----g---tttaactgcccg-ggtctccaggaggaacgctggggatggga-------------------t Tarsier ----g---tctaactgcgcg-ggtctccaggcggggcgctggggatgggg-------------------t Bushbaby ----g---tctaacagcaca-ggtcttcaagagg-gtgctgggagcggtc-------------------t Tree shrew ----g---tctac-tgcgcg-gctcctcagcc--tgcagtaggggtgggg-------------------t Malayan flying lemur ----g---tctaagtgcgcg-ggtctccaggcggggccctggggatgggg-------------------t Pig ----g---tctaattgcgca-ggtcccaaggcggggcgctggggatcaag-------------------g Dolphin ----g---tctaattgcgca-ggtcccaaggcggggcgctggggatcaag-------------------g Cow ----g---tctaattgcgca-ggtccctaggcggggcgctggggatcaaa-------------------g Sheep ----g---tctaattgcgca-ggtccctaggcggggcgctggggatcaag-------------------g Horse ----g---tctaatcgcgca-ggtccccgggcggggcgctagggatcaag-------------------g Chinese pangolin ----g---tcaaattgcgca-agtccccacgcggggctctggggatcaag-------------------g Dog ----g---cctaattgcgcc-ggtccccaggccgggcgctggggctcaag-------------------c Hawaiian monk seal ----g---tctaattgctccaggcccccaggcggggcgctggggctcaag-------------------g Hedgehog ----g---tctcagggcgca-ggtccccaggctgggcgcagggggtccagtggggctgggggagggggag Shrew ----g---tctaattgctta-ggatcacagg---------agggaactag-ggggataggaaggggggga Elephant ----g---tctgactacgg--ggtcctcgggtggggcgccgggattgagg-------------------a Tenrec ----g---tctgtctgcgc--gatcc-cgggcgggggggggggggggggg-------------------g Zebrafish ====================================================================== X. tropicalis ====================================================================== Opossum ====================================================================== Chicken ====================================================================== Mouse ggtggaagg Rat ggtggagag GCF_003668045 tgtggaggg Beaver ggtgctggg Squirrel ggtggtggg Guinea pig aggagagga Rabbit gggggcggg Pika gaggacgga Human gggtggaga Chimp gggtggaga Bonobo gggtggaga Gorilla gggtggaga Rhesus gggtggaga Marmoset gagt--aaa Tarsier gggtgggga Bushbaby gggagggaa Tree shrew gggggaggg Malayan flying lemur ggggaggag Pig --------- Dolphin --------- Cow --------- Sheep --------- Horse --------- Chinese pangolin --------- Dog --------- Hawaiian monk seal --------- Hedgehog --------- Shrew --------- Elephant --------- Tenrec --------- Zebrafish ========= X. tropicalis ========= Opossum ========= Chicken ========= Inserts between block 6 and 7 in window B D Human 4bp B D Chimp 4bp B D Bonobo 4bp B D Gorilla 4bp B D Rhesus 4bp B D Marmoset 4bp B D Tarsier 4bp B D Bushbaby 4bp B D Tree shrew 105bp B D Malayan flying lemur 2bp B D Pig 2bp B D Dolphin 2bp B D Cow 2bp B D Sheep 2bp B D Horse 2bp B D Chinese pangolin 2bp B D Dog 2bp B D Hawaiian monk seal 2bp B D Hedgehog 2bp B D Shrew 2bp Alignment block 7 of 287 in window, 56743020 - 56743091, 72 bps B D Mouse -----------gagcaa----gggc-cgagtgt-tttggtaccaggcaggcaaagaggggcgcg-ct-gg B D Rat -----------gagcag----gggc-tgggcgt-tcttgtgtcgggcagggaacgaagggcgcg-ct-gg GCF_003668045 -----------gagcaa----gggc-agaacgt-tttggtgccaagcaggcaaccaggga-gcg-ct-gg Beaver -----------gagcag---cggcc-caaggat-tttagtgccaagcaggcgaggaggggcgcg-tt-ca B D Squirrel -----------gaggag---cggcc-catggac-tttt----------ggctaggaggggcgcg-tt-cg B D Guinea pig -----------gaggagaggaggcc-caaggac-ttcaggatcgagg-ggcgatgtggggcgcg-tt-ca B D Rabbit -----------gagc------ggcc-cgagagc-ttccgtgcggagccggccagcgggtgcgcg-tt-ca B D Pika -----------gagc------ggccgcgggctc-tttggtgcggagccggccagtccgagcgcg-tt-cg B D Human -----------gagc------ggct-caaggac-tttagtgaggagcaggcgagaaggagcacg-tt-ca B D Chimp -----------gagc------ggct-caaggac-tttagtgaggagcaggcgagaaggagcgcg-tt-ca B D Bonobo -----------gagc------ggct-caaggac-tttagtgaggagcaggcgagaaggagcgcg-tt-ca B D Gorilla -----------gaac------ggct-caaggac-tttagtgaggagcaggcgagaaggagcgcg-tt-ca B D Rhesus -----------gagc------ggct-caaggac-tttagtaaggagcaggcgagaaggagcgcg-tt-ca B D Marmoset -----------gagt------ggcc-caagaaa-tttagtgaggagcaggctacaagcagcgcg-tt-ta B D Tarsier -----------gagc------ggcc-caagacc-ttgagcgaggagcagacgagaaggagcgct-ct-ca B D Bushbaby -----------gagc------agcc-taaggac-tttagtgcgcagcaggcgagaaggagcgtg-tt-ca B D Tree shrew -------------------------------------------gagcag--------------------- B D Malayan flying lemur -----------gaga------agcc-caaggac-tttggtgccgagcaggcgagaaggggcgcg-tt-ca B D Pig -----------gagc------ggcc-ccaggac-tttaaagctgagtaggcgagaaggagccta-ttaca B D Dolphin -----------gagc------ggca-caaggac-tttagcgccgagtaggcgagaaggagccgc-ttgca B D Cow -----------gagc------ggcc-caaggac-attagcgccgagtgggcgagaaggagccgctttgta B D Sheep -----------gagc------ggcc-caaggac-attagcgccgagtgggcgagaaggagccgctttgca B D Horse -----------cagc------ggcc-caaagac-tttagcgacgaccaggcgagaaggggccgg-tcgct B D Chinese pangolin -----------gaag------agcc-caagaac-ttttgcgtggagctggcgagaaggagccgc-ttgca B D Dog -----------tagc------ggcc-caaagacttttagcgccgagcagccgagaaggagccgg-ttgca B D Hawaiian monk seal -----------tagc------agcc-cagagac-tttagcgccgagaagccaagaaggagctgg-ttgca B D Hedgehog -----------gagc------gttc-caaggac-ttgagctccgaactggctaagagaagcggg-ttcca B D Shrew -----------gaga------ggcc-caatgac-ttcagcccgcagcaggcgagaaggagcgcg-ttgca B D Elephant g----------aagt------agcc-caaggac-tttaggtcccagcaggcgagaaggaggcgg-ttgca B D Tenrec ggcgctggtcagaga------agtc-caaggtc-ttca-gtccaagtaggcgagaaggagccgg-tggca B D Zebrafish ====================================================================== B D X. tropicalis ====================================================================== B D Opossum ====================================================================== B D Chicken ====================================================================== Mouse ag-cctcagaa----------------------------------ccgatt-----tcccc Rat ag-tgtcagga----------------------------------ccgatt-----tcccc GCF_003668045 ca-cgtcagga----------------------------------ccgatt-----tcccc Beaver gg-cgtcaaga----------------------------------ccgatt-----tcccc Squirrel gg-cgtcaaga----------------------------------cggatt-----tcccc Guinea pig gg-cgtctgga----------------------------------cggatt-----tctcc Rabbit gg-agtcgaga----------------------------------ccgatt-----ccccc Pika gg-cgtccagg----------------------------------cctctcgctcgccgcc Human gg-cgtcaaga----------------------------------ccgatt-----tctcc Chimp gg-cgtcaaga----------------------------------ccgatt-----tctcc Bonobo gg-cgtcaaga----------------------------------ccgatt-----tctcc Gorilla gg-cgtcaaga----------------------------------ccgatt-----tctcc Rhesus gg-cgtcaaga----------------------------------ccgatt-----tcccc Marmoset gg-catcaaga----------------------------------ccgatt-----tcccg Tarsier gg-cttctgga----------------------------------ccgatt-----tcccc Bushbaby gg-cgtcaaga----------------------------------cctatt-----tctcc Tree shrew ------------------------------------------------------------- Malayan flying lemur gg-cgtcaaga----------------------------------ccgatt-----tcccc Pig gg-cgtcaaga----------------------------------cctatt-----tcc-c Dolphin gg-cgtcgaga----------------------------------ccgatt-----tcccc Cow gg-cgtcaaga----------------------------------ccgact-----tcctc Sheep -g-cgtcaaga----------------------------------ccgact-----tcctc Horse gg-catcagga----------------------------------ccgatt-----tccca Chinese pangolin gg-cgtcatgc----------------------------------cggatt-----tccta Dog gg-cgtcaaga----------------------------------ctgatt-----tcccc Hawaiian monk seal gg-cgtcaaga----------------------------------ccgatt-----tcccc Hedgehog gg-agccaaaacccgacccccgcccccggcgccatccccccccccccacct-----ctccc Shrew gg-cgtcaaag----------------------------------ccgatt-----tcccc Elephant gg-cgtcaaga----------------------------------ccaatt-----tccct Tenrec ggatatcagga----------------------------------tcgatt-----tccct Zebrafish ============================================================= X. tropicalis ============================================================= Opossum ============================================================= Chicken ============================================================= Alignment block 8 of 287 in window, 56743092 - 56743109, 18 bps B D Mouse gcctgcttcgg-ag-agttt B D Rat gcctgcttcgg-ag-agttt GCF_003668045 gtctgcttcgg-ag-agttt Beaver gcctgcttcgg-ag-tcttt B D Squirrel gcctgcttggg-ag-acttc B D Guinea pig gccagcttctg-ag-aacct B D Rabbit gcctggttcgg-ag-acttt B D Pika ggcggcccccg-ag-acttc B D Human ccctgcttcgggag-acttt B D Chimp ccctgcttcgggag-acttt B D Bonobo ccctgcttcgggag-acttt B D Gorilla ccctgcttcgggag-acttt B D Rhesus tcctgcttcgggag-ac-tt B D Marmoset tcctgcttcggagg-acttt B D Tarsier gcctgc-tcgggaa-ccatt B D Bushbaby gtctgcttcgg-ag-acttt B D Malayan flying lemur gcctgctttgg-ag-acttg B D Pig gcctgcttcgg-ag-acttt B D Dolphin gcctgcttcgg-ag-acttc B D Cow gcctgcttcgg-ag-gcttc B D Sheep gcctgcttcgg-ag-gcttc B D Horse gcctgcttcgg-ag-acttt B D Chinese pangolin gcctgtttcgg-ag-acatt B D Dog gcctgcttcgg-ag-gcttt B D Hawaiian monk seal gcctgcttcgg-ag-gcttt B D Hedgehog tcctgctcctg-ag-ac--t B D Shrew gccagtcttgg-ag-acttt B D Elephant gcctgcttcag-ag-acttt B D Tenrec gcttgcttcag-agtttttt B D Opossum gtccgttctgg-aa-agttt B D Tree shrew -------------------- B D Zebrafish ==================== B D X. tropicalis ==================== B D Chicken ==================== Inserts between block 8 and 9 in window B D Rabbit 320bp B D Pika 1bp Alignment block 9 of 287 in window, 56743110 - 56743234, 125 bps B D Mouse --taagtgtccggagttgccc----tgggtct-------------------------------------- B D Rat --agagtgtcccgagttgccc----tgggtctgtctctctctctctctctctctctctctctctctctct GCF_003668045 --tgggtgccgggagctgccc----tgggtct-------------------------------------- Beaver --tgaactttcggagcggccc----agcgccg-------------------------------------- B D Squirrel --agca---ctcgagcggccc----tgagtct-------------------------------------- B D Guinea pig --caaaagtccgagcgggggc----tgcgtct-------------------------------------- B D Pika --cgggcgctcggaacagcctggagtgcgtct-------------------------------------- B D Human --tgaacgctcggagaggccc----ggcatct-------------------------------------- B D Chimp --tgaacgctgggagaggccc----ggcatct-------------------------------------- B D Bonobo --tgaacgctcggagaggccc----ggcatct-------------------------------------- B D Gorilla --tgaacgctcggagaggccc----ggcatct-------------------------------------- B D Rhesus --tgaacgctcggagaggccc----tgcgtct-------------------------------------- B D Marmoset --tgaacgcttggagaggccc----tgagtct-------------------------------------- B D Tarsier --tggaccctcgggacggctc----cgcgtct-------------------------------------- B D Bushbaby --tgaacactcagagctgccc----tgcttag-------------------------------------- B D Tree shrew ----------------------------gtct-------------------------------------- B D Malayan flying lemur --tgagcgctgggagcggccc----tgcgtct-------------------------------------- B D Pig --tgaacactcggagaggctc----t-tgtct-------------------------------------- B D Dolphin --tgagcactcggagaggccc----tgcgtct-------------------------------------- B D Cow --tgaacactcggagaggccc----tgcgtct-------------------------------------- B D Sheep --tgaacactcggagaggccc----tgcgtct-------------------------------------- B D Horse --tgaacgctcggagcggccc----tgcgt---------------------------------------- B D Chinese pangolin --tgaactctcggagcagccc----ttccttt-------------------------------------- B D Dog --tgagcacttggagcggcct----tgcttct-------------------------------------- B D Hawaiian monk seal --tgaacacttggagcggccc----cgcgtct-------------------------------------- B D Hedgehog --tgaattctgggagctgctc----agcgcct-------------------------------------- B D Shrew --tgaactcccgaagctgcac----cgcgtct-------------------------------------- B D Elephant --tgaacactcggagcgtccc----tgcgtct-------------------------------------- B D Tenrec --tggacactc-gagtgtccc----agcg----------------------------------------- B D Opossum ggagaaagcct---atggccc----tacaact-------------------------------------- B D Zebrafish ====================================================================== B D X. tropicalis ====================================================================== B D Chicken ====================================================================== B D Rabbit ====================================================================== Mouse -------------------------------ctcttcttgtttgttgttggg-aatcgcaaagtaggagc Rat ctctctctctctctctctct---------ctctctccttgtttgtagttggg-aatcgcaaagcaggagc GCF_003668045 -------------------------------ttctacttgtttgtagctgga-acgcgcaaagcaggaac Beaver -------------------------------caccacttgttagtagccgtc-gcccgccgggcaagaat Squirrel -----------------cgc---------cacattacttgcctgtagcagcc-gccctc--accagggat Guinea pig -------------------------------cagcattt-----tatttgct-gcccccaccgcaggaat Pika -----------------cgc---------ctctcggctggtccgcggcggct-gccctcgcatcaggaag Human -----------------cac---------cactttacttggccgtaggggcc-tccggcacggcaggaat Chimp -----------------cac---------cactttacttggccgtaggggcc-tccggcacggcaggaat Bonobo -----------------cac---------cactttacttggccgtaggggcc-tccggcacggcaggaat Gorilla -----------------cac---------cactttacttggccgtaggggcc-tccggcacggcaggaat Rhesus -----------------cac---------cactttacttggttgtaggggcc-tccggcacggcaggaat Marmoset -----------------cac---------cactttacttggctgtaggggcc-tctggcaccgcaggaat Tarsier -----------------ccc---------cact----ttgaccgtggcggcc-tctcgcccggcaggaac Bushbaby -----------------cac---------caccacacttgactggagcggcc-tccagcac-gcaggaat Tree shrew -----------------gac---------cc--------------------------------------- Malayan flying lemur -----------------cac---------cactttacatgtctgtagcagccgcccttcacgacaggaat Pig -----------------cac---------cattttattcgtttatagccgcc-gcaggcaccaccagaat Dolphin -----------------cac---------cactacatttgtctgtagcggcc-tcaggcactgccagaat Cow -----------------cac---------cactttatttgcttgtatcggcc-gcaggcactgcggtaat Sheep -----------------cac---------cactttatttgcttgtatcggcc-gcaggcactgccgtaat Horse -------------------c---------tattttat-------tagcggcc-ataggcatcaccagaat Chinese pangolin -----------------tac---------cattttatttgtttgtagcggcc-tcaggcagcaccataat Dog -----------------cac---------cactttatttgcttgtagtggcc-gcaggcaccaccggaac Hawaiian monk seal -----------------cac---------cactttatttgcttgtagtggcc-gcagacaccactggaat Hedgehog -----------------cgc---------cactcaatttgtttgtggcggtc-tcaggcaccgcggaaat Shrew -----------------cac---------cacttgatttgcctgtagcggct-gcagtcacccccagaat Elephant -----------------cac---------ccttttatttgcctatcacggcc-tccggctcccctggaat Tenrec -------------------------------------------atcgc-gcc-atcagcgcctcaggacc Opossum -----------------tgctcttagttgtaatttgtttgcctat-gaagca-acagacg-aactggatt Zebrafish ====================================================================== X. tropicalis ====================================================================== Chicken ====================================================================== Rabbit ====================================================================== Mouse g-a-------------------------------------ggtctgg--ccgca-----gcttgttttga Rat g-a-------------------------------------ggtctgg--tctca-----gcttgtttt-- GCF_003668045 g-a-------------------------------------ggtctgg--ccaca-----gcttgttccgg Beaver g-a--------g-------------ggagg--g-------ggtccga--ccaca-----gcttgtttggg Squirrel g-a--------g-------------aaagg--gat---tccaaccga--cccga-----gattgttttgg Guinea pig g-a--------g-------------gaagg--ggt---ccgtgctga--cctca-----acttccacggg Pika c-agggatgtgg-------------ggagg--ggg---tccgcctggacccggg-----ggtcgtccggg Human g-a--------g-------------ggagg--ggg---tccgattgg--acagt-----gacggtttggg Chimp g-a--------g-------------ggagg--ggg---tccgattgg--accgt-----gacggtttggg Bonobo g-a--------g-------------ggagg--ggg---tccgattgg--accgt-----gacggtttggg Gorilla g-a--------g-------------ggagg--ggg---tccgattgg--accgt-----gacggtttggg Rhesus g-a--------g-------------agagg--ggg---tccgattgg--accgt-----gaccgtttcgg Marmoset g-a--------g-------------ggagg--ggg---tccgattgg--accgt-----gacag-ttggg Tarsier gaa--------g-------------ggagg--ggg---tccgactgc--gcctcagctgggctgtttggg Bushbaby c-a--------g-------------ggagg--gca---tctagccgg--acctt-----ggcgcttt-gg Tree shrew ----------------------------------------------g--acctt-----ggccacttggg Malayan flying lemur g-a--------g-------------ggagg--gcg---tccgaatgg--accgc-----ggcgatttggg Pig g-a--------g-------------ggagg--aggg--tttacctgg--accac-----gggaatttgag Dolphin g-a--------g-------------ggagg--aggg--tctgactcg--accgc-----ggtgatttgca Cow g-a--------g-------------ggagg--aggg--tctgactca--acccc-----ggtgatttgag Sheep g-a--------g-------------ggagg--aggg--tctgactca--accgc-----ggtgatttgag Horse g-c--------g-------------ggagg--tggtggtctgactct--agcgc-----gatggtttggg Chinese pangolin a-a--------g-------------agaag--gggc--tcggattcg--acagc-----ggtagttt-ta Dog g-g--------ggtggggggagggagggag--ggtg--tccgattcg--acctt-----agtggtttggg Hawaiian monk seal g-g--------g-------------gggag--gggg--tccgactcg--acctt-----agtggtttggg Hedgehog g-a--------g-------------agagggcgggt--cttgacccc--ac------------------- Shrew g-a--------a-------------ggagg--ggca--tctgacccg--acctc-----ggtagttt-gg Elephant g-a--------c-------------taggg--g-----cgcgaccag--actgcgcc--gtcgcctttgg Tenrec g-a--------c-------------ggggg--c-----tccgactcc--acc--------ccggctttga Opossum g-c--------a-------------ggagg--aggg--tgggagaat--gaagc-----agtcggatagt Zebrafish ====================================================================== X. tropicalis ====================================================================== Chicken ====================================================================== Rabbit ====================================================================== Mouse gacgtttggctc---------ag-gccggaacagtctggtttcg----g-g------------------ Rat -----tgagctc---------ag-gctggagcagtctggttttg----g-------------------- GCF_003668045 gctgtttggccc---------ag-gccgagactgtctggtttcg----g-g------------------ Beaver gacgttcggcag---------tgttccgggactgtatattttgg----g-g------------------ Squirrel gccgttcggcaa---------tg-ttcggggacctatggtttgg----g-g------------------ Guinea pig gctgttcagcga---------ag-tgcgggaccttagggttagg----g-g------------------ Pika actgtgcgggccgtgtttgtagg-ggcagtggcgtccggtcctgctgcg-c------------------ Human gccgttcggcta---------tgttcagggaccatatggtttgg----g-g------------------ Chimp gccgttcggcta---------tgttcagggaccatatggtttgg----g-a------------------ Bonobo gccgtttggcta---------tgttcagggaccatatggtttgg----g-a------------------ Gorilla gccgttcggcta---------tgttcagggaccatatggtttgg----g-g------------------ Rhesus gccgttcggcta---------tgttccgggaccgtatggtttgg----g-g------------------ Marmoset cccgttcggctt---------tgttcaggaatcgtttggcttgg----g-g------------------ Tarsier gccgctcggcca---------tgttcggggactgaatggtttgg----g-g------------------ Bushbaby gccgttc-gcta---------tgttcgggaaccgtatggtttgg----g-g------------------ Tree shrew gccgttagacaa---------tgttaggggaccggatggtttgg----g-g------------------ Malayan flying lemur gccattcggcaa---------tgtttggggaccgtctggcttgg----g-g------------------ Pig gccgttcctcaa---------ggctcggagatcctatggttcgg----g-g------------------ Dolphin gccgttcctcaa---------ggctcggggaccttacggtttgg----t-g------------------ Cow gccgttcctcaa---------ggctcggggaccgtatggtttgg----t-g------------------ Sheep gccgttcctcaa---------ggctcggggaccgtatggtttgg----t-g------------------ Horse gtcgtttggctg---------ggctcaaggaccgaatgatttgg----g-g------------------ Chinese pangolin gcggttcggcaa---------ggct-agcgatcttatgg-ctgg----g-g------------------ Dog gctgttgggcaa---------ggctcggggacagtagggtttgg----g-a------------------ Hawaiian monk seal gccattgggcaa---------ggctcgggggcagtagggtttgg----g-a------------------ Hedgehog --ggtccagctg---------ggctc-gagaccgtcgcgtctgg----g-g------------------ Shrew gtggttgggcta---------agctcggagaccgtagagttcgg----gag------------------ Elephant gctgttcggcga---------ggttcgtggttcgtatggtttgg----g-g------------------ Tenrec gccgatcggcgt---------ggttcgtggagcatgtgatttgg----g-a------------------ Opossum tcatttcagtga---------ggcttcggaaccatgcgatttga----a-gacccactttggtttaggg Zebrafish ===================================================================== X. tropicalis ===================================================================== Chicken ===================================================================== Rabbit ===================================================================== Inserts between block 9 and 10 in window B D Opossum 86bp Alignment block 10 of 287 in window, 56743235 - 56743277, 43 bps B D Mouse gcaaccccag----tcctt------atagaagg-gtgt-----------------c---ataaccctgcc B D Rat ------------------------------agg-gtgt-----------------c---ataacactgcc GCF_003668045 gcagccacaa----tccta------tcaggagg-gtgt-----------------c---atagctctgtc Beaver acagccccag----tcgttagtc--aggggcgg-gtac-----------------g---ttagccctgcc B D Squirrel acagtacaag----tggttagtc--aggggtgg-gtgc-----------------g---ttagttctgtc B D Guinea pig acagcccccg----tcctaag----tcggggcg-gttc-----------------c---ttagcccggcc B D Pika tcagccccgg----gcccacgtcttggggggag-gtgc-----------------gcgtgtgggccggcc B D Human acagccccag----tagttagta--ggggacgg-gtgc-----------------g---ttcgcccagtc B D Chimp acagccccag----tcgttagta--cgggacgg-gtgc-----------------g---ttcgcccagtc B D Bonobo acagccccag----tcgttagta--cgggacgg-gtgc-----------------g---ttcgcccagtc B D Gorilla acagccccag----tcgttagta--cgggacgg-gtgc-----------------g---ttcgcccagcc B D Rhesus acagtcccag----tcgttagta--cgggacgg-gcgc-----------------g---ttcgcccagtc B D Marmoset acagcccctg----tcgttagta--caggacgg-gtgc-----------------g---ttcgcccagtc B D Tarsier a-----cccg----cggttagcc--ccgggaga-gcgc-----------------t---ttcgccctgcc B D Bushbaby acagccccag----tcgtcattc--tggggcgg-gtgc-----------------g---tcctccctgct B D Tree shrew acagctccag----acgttagcc--tggggcgg-gtgc-----------------g---ttcgctctgcc B D Malayan flying lemur acagcccccg----tcgttagtc--cggggcaa-gtgt-----------------g---tccgcccggtt B D Pig aaagcccggg----tccttagtc--ctaggc-g-gtgt-----------------a---tccgccttgcc B D Dolphin aaagcccgggtccttccttagtc--cgaggcgg-gtgt-----------------a---tccgccttgta B D Cow aaagcccggg----tccttagtc--ccaggcgg-gtgc-----------------c---tccgccttgcc B D Sheep aaagcccggg----tccttagtc--ccaggcgg-gtgc-----------------c---tccgtcttgcc B D Horse aaagccgggg----tccttagtc--cggggcgg-gtgc-----------------a---accgccctgcc B D Chinese pangolin aaagct-ggg----tccttagtc--ctgggtggtttgt-----------------a---gccaacct-tc B D Dog aaagcccagg----ttccccgcc--gggggtgg-gtgc-----------------a---tctacccagcc B D Hawaiian monk seal aaagcccagg----tcccgagtc--ccgggtgg-gtgc-----------------a---tctgccctgcc B D Hedgehog acagcccgcg----tctgtagtc--tgggacgc-gtgtcagtctgtctgtcggcgt---gtcggcctgtc B D Shrew aaagcccggg----tcttgactc--cggatcct-gtgc-----------------t---cccgccctacc B D Elephant acagcccctg----tccttgatc--cggggcga-gtga-----------------g---ttcgccctgcc B D Tenrec acagtccctg----tccctgtcc--cacggcta-gtgg-----------------g---ttcg-cctgcc B D Zebrafish ====================================================================== B D X. tropicalis ====================================================================== B D Opossum ====================================================================== B D Chicken ====================================================================== B D Rabbit ====================================================================== Mouse cctg Rat cctg GCF_003668045 atcg Beaver cccg Squirrel cccg Guinea pig cctg Pika accc Human cccg Chimp cccg Bonobo cccg Gorilla cccg Rhesus cccg Marmoset cccg Tarsier cgcg Bushbaby cccg Tree shrew ccgg Malayan flying lemur cgcg Pig ccca Dolphin cctg Cow ccct Sheep ccct Horse ccct Chinese pangolin ccct Dog ccct Hawaiian monk seal ttct Hedgehog ctcc Shrew tccc Elephant ccca Tenrec ccca Zebrafish ==== X. tropicalis ==== Opossum ==== Chicken ==== Rabbit ==== Inserts between block 10 and 11 in window B D Hedgehog 6bp B D Shrew 6bp Alignment block 11 of 287 in window, 56743278 - 56743286, 9 bps B D Mouse gac----------gctctt----------- B D Rat gaa----------gctctt----------- GCF_003668045 gac----------actcgt----------- Beaver gac----------gctttc----------- B D Squirrel gac----------actcac----------- B D Guinea pig gac----------gcggac----------- B D Pika cgc----------gccctcgctgtgcaccg B D Human gat----------gcgtag----------- B D Chimp gat----------gcgtag----------- B D Bonobo gat----------gcgtag----------- B D Gorilla gat----------gcgtag----------- B D Rhesus gac----------gcgcag----------- B D Marmoset gac----------gcgcag----------- B D Tarsier ggc----------gcgcac----------- B D Bushbaby gac----------gcgcac----------- B D Tree shrew gac----------gcgcac----------- B D Malayan flying lemur gac----------gcgcac----------- B D Pig gac----------gcgcgc----------- B D Dolphin gac----------acgcgc----------- B D Cow gac----------gcgcgc----------- B D Sheep gac----------gcgcgc----------- B D Horse gat----------gggcgc----------- B D Chinese pangolin gac----------actcgc----------- B D Dog gac----------gtgggc----------- B D Hawaiian monk seal gac----------gtcggc----------- B D Hedgehog gtagtgtgtgtgcgcgcgc----------- B D Shrew aaa----------gcgcac----------- B D Elephant gac----------gcgcgc----------- B D Tenrec cac----------gcgcgc----------- B D Zebrafish ============================== B D X. tropicalis ============================== B D Opossum ============================== B D Chicken ============================== B D Rabbit ============================== Alignment block 12 of 287 in window, 56743287 - 56743347, 61 bps B D Mouse ggaggccgagtgg----caggcgg-ctgtcccaag---------------cagttggtgcgcgttgtggc B D Rat ggaggccgagtgg----caggctg-ctgtcccaag---------------cagttggtgcgcgttgtggc GCF_003668045 ggaggccgagtgg----caggcgt-ttgtcccaag---------------aagcgggtgcgcgttgtcgc Beaver ggaggccgagtgg----caggcgg-cggtcccaag---------------cagcgggcgcgcgtccccgc B D Squirrel --agtccaagtgg----caggcgg-ctgtcccaag---------------cggcgggtgcgcgtccccgc B D Guinea pig ggaggccaagtgg----caggcag-ttgtcccaag---------------cggcggttgcgcgtccctgc B D Pika gggaagcgagcgg-gcacgggcggcctgtcccaag---------------cggcgggtgcgcgtccc--c B D Human ggaggcccagtgg----caggcag-ctgtcccaag---------------cagcgggtgcgcgtccctgc B D Chimp ggaggcccagtgg----caggcgg-ctgtcccaag---------------cagcgggtgcgcgtccctgc B D Bonobo ggaggcccagtgg----caggcgg-ctgtcccaag---------------cagcgggtgcgcgtccctgc B D Gorilla ggaggcccggtgg----caggcgg-ctgtcccaag---------------cagcgggtgcgcgtccctgc B D Rhesus ggaggcccagtgg----caggcgg-ctgtcccaag---------------cagcgggtgcgcgcccctgc B D Marmoset ggaggcccagtgg----caggcgg-ctgtcccaag---------------cagcgtgtgcgcgtctccgc B D Tarsier ggaggccgggcgg----caggcag-ctgtcccaag---------------aggcgggtgcgcgtccccgc B D Bushbaby tgaggtcgagtgg----caggcag-ctgtcccaag---------------cggcgggtgcgcgtccccgc B D Tree shrew ggaggccgggtgg----caggctg-ctgtcccaag---------------cagcgggtgtgcgtccccgc B D Malayan flying lemur ggaggccgacagg----caggcgg-ctgtcccaag---------------cggcgggtgcgcgtccccgc B D Pig ggagcccaagcag----caagcag-ctgtcccaaa---------------cagcgggtgcgcgtccccac B D Dolphin ggaggccgagtgg----caagcgc-ttgtcccaaa---------------ctgcggatgcgcgtccccgc B D Cow ggaggccgagtgg----caagcgg-ttgtcccaaa---------------ctgtgggtgcgcgtccccgc B D Sheep ggaggccgagtgg----caagcgg-ttgtcccaaa---------------ctgtgggtgcgcgtccccgc B D Horse ggaggccgagtgg----caagcgg-ctgtcccaaa---------------ctgcgggtgcgcgttcccgc B D Chinese pangolin ggaggccgagtgt----caagcga-ctgttccaaa---------------ctgcgggtgcgcgttcccgc B D Dog ggaggccgagtgg----taaccgg-ctgtcccaaa---------------ctgccggggcgcgtccccgc B D Hawaiian monk seal ggaggccgagtgg----taaacgg-ctgtcccaaa---------------ctgccggtgcgcgtccccgc B D Hedgehog ggaggccgagcgg----ccagcga-cctccccgaa---------------cagcgagtgcgcgtccccgc B D Shrew ggagatc--gcgg----caagctg-ctgtcccgaa---------------ctgcgggtgcgcgtccctgc B D Elephant ggaggccgagtgg----caagcgg-ctgtcccaag---------------cggcgggtgcgcgtccccgc B D Tenrec ggaggccgggtgt----caggcag-ctgtcccaag---------------cggcgggtgcgcgtccccgc B D Opossum ggaggaagaagggtgatctgacag-ttgtcacagtgatctgtgtgtgttcctgtgcgcgcgcgagcgcgc B D Zebrafish ====================================================================== B D X. tropicalis ====================================================================== B D Chicken ====================================================================== B D Rabbit ====================================================================== Mouse gcgctctgtgc------- Rat gcgctctatgg------- GCF_003668045 gcgctctgtgc------- Beaver gcgctatgtgt------- Squirrel gcgctgtgtgt------- Guinea pig gcgctgtgtgt------- Pika gcgctgtgtgt------- Human gcgctgtgtgt------- Chimp gcgctgtgtgt------- Bonobo gcgctgtgtgt------- Gorilla gcgctgtgtgt------- Rhesus gcgctgtgtgt------- Marmoset gcgctgtgtgt------- Tarsier gcgctctgtgt------- Bushbaby gcgctgtgtgt------- Tree shrew gctccttgtgt------- Malayan flying lemur gcgctatgtgt------- Pig gcgcc-tgtgt------- Dolphin gcgccatgtgt------- Cow gcgccgtgtgt------- Sheep gcgccgtgtgt------- Horse gtgccgtgtgt------- Chinese pangolin gcgcc--ctgt------- Dog gcgccgcgtgt------- Hawaiian monk seal gcgccgtgtgt------- Hedgehog gcgccgtgtgt------- Shrew gcgccgtgtgt------- Elephant gcgccctgtgt------- Tenrec gcgccttgtgt------- Opossum gcgttgtttgcgtttatg Zebrafish ================== X. tropicalis ================== Chicken ================== Rabbit ================== Alignment block 13 of 287 in window, 56743348 - 56743352, 5 bps B D Mouse tcct-t B D Rat tcct-t GCF_003668045 tcct-t Beaver tcct-t B D Squirrel tcct-t B D Guinea pig tcct-t B D Pika tcgt-t B D Human tcat-t B D Chimp tcat-t B D Bonobo tcat-t B D Gorilla tcat-t B D Rhesus tcgt-t B D Marmoset tcgt-t B D Tarsier tggt-c B D Bushbaby ttgt-t B D Tree shrew tcgt-t B D Malayan flying lemur tcgt-t B D Pig tcgt-t B D Dolphin tcgt-t B D Cow tcgt-t B D Sheep tcgt-t B D Horse tcat-t B D Chinese pangolin cccc-t B D Dog tggt-t B D Hawaiian monk seal tcgt-t B D Hedgehog tggtct B D Shrew tcat-t B D Elephant tcgt-t B D Tenrec tcgt-t B D Opossum ttct-t B D X. tropicalis tctc-t B D Zebrafish ====== B D Chicken ====== B D Rabbit ====== Alignment block 14 of 287 in window, 56743353 - 56743355, 3 bps B D Mouse ttg B D Rat ttg GCF_003668045 ttg Beaver ttg B D Squirrel ttg B D Guinea pig tcg B D Pika tcg B D Human ttg B D Chimp ttg B D Bonobo ttg B D Gorilla ttg B D Rhesus ttg B D Marmoset ttt B D Tarsier ttg B D Bushbaby ttg B D Tree shrew ttg B D Malayan flying lemur ttg B D Pig ttg B D Dolphin ttg B D Cow ttg B D Sheep ttg B D Horse ttg B D Chinese pangolin ttg B D Dog ttg B D Hawaiian monk seal ttg B D Hedgehog ttg B D Shrew ttg B D Elephant ttg B D Tenrec ttg B D Opossum ttg B D Chicken ttg B D X. tropicalis ttg B D Zebrafish === B D Rabbit === Alignment block 15 of 287 in window, 56743356 - 56743356, 1 bps B D Mouse c B D Rat c GCF_003668045 c Beaver c B D Squirrel c B D Guinea pig c B D Pika c B D Human c B D Chimp c B D Bonobo c B D Gorilla c B D Rhesus c B D Marmoset t B D Tarsier c B D Bushbaby c B D Tree shrew c B D Malayan flying lemur c B D Pig c B D Dolphin c B D Cow c B D Sheep c B D Horse c B D Chinese pangolin c B D Dog c B D Hawaiian monk seal c B D Hedgehog c B D Shrew c B D Elephant c B D Tenrec c B D Opossum c B D Chicken c B D X. tropicalis c B D Lamprey c B D Zebrafish = B D Rabbit = Alignment block 16 of 287 in window, 56743357 - 56743386, 30 bps B D Mouse agagccagccttcggggaggtgaaccagct B D Rat agagccagccttcggggaggtgaaccagct GCF_003668045 agagccagccttcggggaggtgaaccagct Beaver agagccagccttcggggaggtgaaccagct B D Squirrel agagccagctttcggggaggtgaaccagct B D Guinea pig agagccagccttcggggaggtgaaccagct B D Pika agagccagccttcggggaggtgaaccaact B D Human agagccagccttcggggaggtgaaccagct B D Chimp agagccagccttcggggaggtgaaccagct B D Bonobo agagccagccttcggggaggtgaaccagct B D Gorilla agagccagccttcggggaggtgaaccagct B D Rhesus agagccagccttcggggaggtgaaccagct B D Marmoset agagccagctttcggggaggtgaaccagct B D Tarsier agaaccagccttcggggaggtgaaccagct B D Bushbaby agagccagccttcggggaggtgaaccagct B D Tree shrew agagcctgcctttggggaggtgaaccagct B D Malayan flying lemur agaaccagccttcggggaggtgaaccagct B D Pig agagccagcctttggggaggtgaaccagct B D Dolphin agagccagccttcggggaggtgaaccagct B D Cow agagccagcctttggggaggtaaaccagtt B D Sheep agagccagcctttggggaggtaaaccagtt B D Horse agagccagcctttggggaggtgaaccagct B D Chinese pangolin agagccagcctttggggaggtgaaccagct B D Dog agagccagcctttggggaggtgaaccagct B D Hawaiian monk seal agagccagcctttggggaggtgaaccagct B D Hedgehog agagccggccttcggggaggtgaaccagct B D Shrew agagccagcctttggggaggtgaaccagct B D Elephant agagccagccttcggggaggtgaaccagtt B D Tenrec agagccagccttcggggaggtgaaccagtt B D Opossum agagccagctttcggggaggtcaaccagct B D Chicken agaacccgccttcggggaggtgaaccagct B D X. tropicalis agaacccgctttcggggaagtgaaccagct B D Zebrafish agagccagcctttggggaggtgaaccaact B D Lamprey agaccagtcgttcggcgaggtgaaccagct B D Rabbit ============================== Alignment block 17 of 287 in window, 56743387 - 56743918, 532 bps B D Mouse gggaggagtgttcgtgaacggaaggccgctgcccaacgccattcggcttcgcatcgtggaattagcccaa B D Rat gggaggagtgttcgtgaacggaaggccgctgcccaacgccattcggcttcgcatcgtggaattagcccaa GCF_003668045 gggaggagtgttcgtgaacggaaggccgctgcccaacgccattcgacttcgcatcgtggaattagcccaa Beaver gggaggagtgttcgtgaacggaaggccgcttcccaacgccatccggcttcgcatcgtggaactagcccaa B D Squirrel gggaggagtgttcgtgaacggaaggccgctgcccaacgccatcaggcttcgtattgtggaactggcccaa B D Guinea pig gggaggagtgttcgtgaacggaaggccgctgcccaacgccatccggcttcgcatcgtggaactggcccaa B D Rabbit gggaggagtgttcgtgaacgggaggccgctgcccaacgccatccggcttcgcatcgtggaactggcccag B D Pika gggaggagtgttcgtgaacgggagaccgctgcccaacgccatccggcttcgcatcgtggaactggcccag B D Human gggaggagtgttcgtgaacgggaggccgctgcccaacgccatccggcttcgcatcgtggaactggcccaa B D Chimp gggaggagtgttcgtgaacgggaggccgctgcccaacgccatccggcttcgcatcgtggaactggcccaa B D Bonobo gggaggagtgttcgtgaacgggaggccgctgcccaacgccatccggcttcgcatcgtggaactggcccaa B D Gorilla gggaggagtgttcgtgaacgggaggccgctgcccaacgccatccggcttcgcatcgtggaactggcccaa B D Rhesus gggaggagtgttcgtgaacgggaggccgctgcccaacgccatccggcttcgcatcgtggaactggcccaa B D Marmoset gggtggagtgttcgtgaacgggaggccgctgcccaacgccatccggcttcgcatcgtggaactggcccaa B D Tarsier gggaggagtgttcgtgaacggcaggccgctgcccaacgccatccggcttcgcatcgtggaactggcccaa B D Bushbaby gggaggagtgttcgtgaacgggaggccgctgcccaacgccatccggcttcgcatagtggaactggcccaa B D Tree shrew gggaggagtgtttgtaaacgggaggccgctgcccaacgccatccggcttcgcatagtggaactggcccaa B D Malayan flying lemur gggaggagtgttcgtgaacgggaggccgctgcccaacgccatccggcttcgcatcgtggaactggcccaa B D Pig cggaggagtattcgtgaacgggaggccgctgcccaacgccatccggcttcgcatagtggaactggcccaa B D Dolphin gggaggagtattcgtgaacgggaggccgctgcccaacgccattcggcttcgcatagtggagctggcccaa B D Cow gggaggagtattcgtgaacgggaggccgctgcccaacgccatccggcttcgcatagtggagctggcccaa B D Sheep gggaggagtattcgtgaacgggaggccgctgcccaacgccatccggcttcgcatagtggagctggcccaa B D Horse gggaggagtattcgtgaacgggaggccgctgcccaacgccatccggcttcgcatcgtggaactggcccaa B D Chinese pangolin gggaggagtattcgtgaacgggaggccgctgcccaacgccatccggcttcgtatcgtggaactggcccaa B D Dog gggaggagtattcgtgaacgggaggccgctgcccaacgctatccggcttcgtatcgtggaactggcccaa B D Hawaiian monk seal gggaggagtattcgtgaacgggaggccgctgcccaacgccatccggcttcgtatcgtggaactggcccaa B D Hedgehog gggaggagtgtttgtcaacgggaggccgctgcccaacgccatccggcttcgcatcgtggaactggcccaa B D Shrew gggaggagtattcgtgaacgggaggcccctgcctaacgccatccggcttcgcatcgtggaactggcccaa B D Elephant gggaggagtgtttgtgaacgggaggccgctgcccaacgccatccggcttcgcatcgtggaactggcccaa B D Tenrec gggaggagtgtttgtgaacgggaggccgctgcctaacgccatccggcttcgtatcgtggaactggcccaa B D Opossum gggaggggtattcgtgaacgggaggcctttacccaacgccatcagactccgcatcgtggaactggcccaa B D Chicken cgggggggtgttcgtcaacgggaggcccctgcccaacgccatccggctccggattgtggaactggcacag B D X. tropicalis gggcggcgtgtttgtgaatgggaggcctctgcccaatgccatccgcctgcggatcgtggagctggcgcag B D Zebrafish aggcggtgtttttgtcaacggaagacccctacccaatgccatccggctcaggatagtagagttggcccag B D Lamprey gggcggcgtcttcgtgaacgggcgaccgctgcccaacgcgatccgcctgcgcatcgtagagatggcgcag Mouse ctgggcatccgaccttgtgacatcagccgccagctacgggtctcgcacggctgcgtcagcaagatcctgg Rat ctgggcatccgaccttgtgacatcagccgacagctacgggtctcgcacggctgcgtcagcaagatcttgg GCF_003668045 ctgggcatccgaccttgtgacatcagccgccagttacgggtctcacacggctgcgtcagcaagatcctgg Beaver ctgggcatccgaccctgtgacatcagccgccagctaagagtctcgcacggctgcgtcagcaagatcctgg Squirrel ctgggcatccgaccgtgtgacatcagccgccagctacgggtctctcacggctgcgtcagcaagatcctgg Guinea pig ctgggcatccgaccgtgtgacatcagccgccaactccgggtctcgcacggttgcgtcagcaagatcttgg Rabbit ctgggcatccgaccgtgtgacatcagccgccagctacgagtctcgcacggctgcgtcagcaagatcctgg Pika ctgggcatccgaccgtgtgacatcagccgccagctgcgggtctctcatggttgcgtcagcaagatcctgg Human ctgggcatccgaccgtgtgacatcagccgccagctacgggtctcgcacggctgcgtcagcaagatcctgg Chimp ctgggcatccgaccgtgtgacatcagccgccagctacgggtctcgcacggctgcgtcagcaagatcctgg Bonobo ctgggcatccgaccgtgtgacatcagccgccagctacgggtctcgcacggctgcgtcagcaagatcctgg Gorilla ctgggcatccgaccctgtgacatcagccgccagctacgggtctcgcacggctgcgtcagcaagatcctgg Rhesus ctgggcatccgaccgtgtgacatcagccggcagctacgggtctcgcacggctgcgtcagcaagatcctgg Marmoset ctgggcatccgaccctgtgacatcagccgccagctacgggtctcacacggctgtgtcagcaagatcctgg Tarsier ctgggcatccgaccgtgtgacatcagccgccagctacgggtctcgcacggttgcgtcagcaagatcctgg Bushbaby ctgggcatccgaccgtgtgacatcagccgccagctacgggtctcgcacggctgcgtgagcaagatcctgg Tree shrew ctgggcatccgaccgtgtgacatcagccgccagttaagggtctctcacggctgcgtcagcaagatcttgg Malayan flying lemur ctgggcatccgaccgtgtgacatcagccgccagctacgggtctcacacggctgcgtcagcaagatcctgg Pig ctgggcatcagaccatgtgacatcagccgccagctacgggtctcgcacggctgcgtcagcaagatcctgg Dolphin ctgggcatccgaccgtgtgacatcagccgccagctacgggtctcgcacggctgcgtcagcaagatcctgg Cow ctgggcatccgaccgtgtgacatcagccgccagctacgggtctcgcacggctgcgtcagcaagatcctgg Sheep ctgggcatccgaccgtgtgacatcagccgccagctacgggtctcgcacggctgcgtcagcaagatcctgg Horse ctgggcatccgaccgtgtgacatcagccgccagctacgggtctcacacggctgcgtcagcaagatcctgg Chinese pangolin ctgggcatcagaccgtgtgacatcagccgccagctacgggtctcgcacggctgcgtcagcaagattctag Dog ctgggcatcagaccgtgtgacatcagccgccagctacgggtctcacacggctgcgtcagcaagattctgg Hawaiian monk seal ctgggcatcagaccgtgtgacatcagccgccagctacgggtctcgcacggctgcgtcagcaagattctgg Hedgehog ctgggcatccgaccgtgtgacatcagccgccagctccgggtgtcccacggctgcgtcagcaagatcctgg Shrew ctgggcatccgaccctgtgacatcagccgccagctacgggtctcgcacggctgcgtcagtaagatcctgg Elephant ctgggcatccgaccgtgtgacatcagccgtcagctacgggtctcgcacggctgcgtcagcaagatcctgg Tenrec ctgggcattcgaccgtgtgacatcagccgccagctacgggtctcgcacggctgtgtcagcaagatcctgg Opossum ttgggcatccgaccctgtgacatcagccggcagttaagagtgtcccatggctgtgtcagtaagatactgg Chicken ctggggatcaggccctgcgacatcagccgccagctccgcgtttcccacggctgtgtgagcaaaatcctgg X. tropicalis ctgggcatccggccgtgcgatatcagtaggcagctgcgagtgtcgcacggatgtgtcagcaagattctag Zebrafish ttgggcatcaggccttgtgacatcagcaggcagctccgcgtctcccacggctgcgtgagcaagattctgg Lamprey ctgggcatcaggccgtgcgacatctcgcggcagctgcgcgtctcccacggctgcgtctccaagatcctgg Mouse cgcgctacaacgagaccggttcgattttgccgggagctattggggggagcaagccccgggtcacca-ccc Rat cgcgctacaacgagaccggttcgattttgccgggagctatcgggggaagcaagccccgggtcacca-ccc GCF_003668045 cgcgctacaacgagaccggctcgattttgcccggagccatcgggggcagcaaaccccgggtcacca-ctc Beaver cgcgctacaatgagacgggctcgatcttgccaggagccatcgggggcagcaagccccgggtcacta-ccc Squirrel cgcgctacaatgaaacaggctcgatcttgccaggagccatcgggggcagcaagccccgggtcacca-ctc Guinea pig cgcgctacaatgagacgggctcgatcttgcctggagcgattgggggcagcaagccgcgggtcacca-ctc Rabbit cgcgctacaacgagacgggctcgatcttgccaggagccatcgggggcagcaagccccgggtcacca-ccc Pika cgcgctacaacgagaccggctcgatcttgccaggagccatcgggggcagcaagccccgggtcacga-ccc Human cgcgatacaacgagacgggctcgatcttgccaggagccatcgggggcagcaagccccgggtcacta-ccc Chimp cgcgatacaacgagacgggctcgatcttgccaggagccatcgggggcagcaagccccgggtcacta-ccc Bonobo cgcgatacaacgagacgggctcgatcttgccaggagccatcgggggcagcaagccccgggtcacta-ccc Gorilla cgcgatacaacgagacgggctcgatcttgccaggagccatcgggggcagcaagccccgggtcacta-ccc Rhesus cgcgatacaacgagacgggctcgatcttgcctggagccatcgggggcagcaagccccgggtcacta-ccc Marmoset cgcgctacaacgaaacaggctcgatcttgccaggagccatcgggggcagcaagccccgggtcacta-ccc Tarsier cgcgctacaacgagacgggctcgatcttgccaggagccatcgggggcagcaagccccgggtcacaa-ccc Bushbaby cgcgctacaacgagacgggttcgatcttgccaggagccatcgggggcagcaagccccgagtcacca-ccc Tree shrew cgcgctacaacgagacaggctcgatcttgccaggagccatcgggggcagcaagccccgggtcacta-ccc Malayan flying lemur cgcgctacaacgagacaggctcaatcttgccaggagccatcgggggcagcaagccccgggtcacca-cac Pig cgcgctacaatgagacaggctcaatcttgccaggagccatcgggggtagcaagcctcgggtcacca-ccc Dolphin cgcgctacaatgagacaggctcgatcttgccaggggccattgggggcagcaagcctcgggtcacca-ccc Cow cgcgctacaatgagacaggctcgatcttgccaggagccattgggggcagcaagcctcgggtcacca-ccc Sheep ctcgctacaatgagacaggctcgatcttgccaggagccattgggggcagcaagcctcgggtcacca-ccc Horse cgcgctacaacgagacaggctcgatcttgccaggagccattgggggcagcaagccccgggtcacca-ccc Chinese pangolin cgcgctacaacgagacaggctcgatcttgccaggagccatcgggggcagcaagccccgggtcacta-ctc Dog cgcgctacaacgagacgggctcgatcttgccaggagccattgggggcagcaagccccgagttacca-ccc Hawaiian monk seal cgcgctacaacgagactggctcgatcttgccaggagccattgggggcagtaagccccgagttacca-ccc Hedgehog cgcgctacaacgagacgggctcgatcttgcccggagccatcggaggcagcaaaccccgggtcacca-ccc Shrew cgcgctacaacgagacgggctcgatcttgcccggagctatagggggcagtaagcctcgggtcacca-ccc Elephant cgcgctacaacgagacaggctcgatcttgccaggggccattgggggcagcaagccccgggtcaccacccc Tenrec cgcgctacaacgagacgggttcgatcttgccaggggccatcgggggcagcaagccccgggtcacca-ccc Opossum cgcgctacaatgagactggctccatcttacctggggccattgggggcagcaaacctcgggttacca-ccc Chicken ctcgctacaacgagaccggctccatcctaccgggggctatcggaggcagcaagccgcgggtcacca-ccc X. tropicalis cgcggtacaacgagaccggctccatcctgccgggggccatcgggggcagcaagcccagggtcacta-ccc Zebrafish ctcggtacaacgaaaccggctcaatacttcccggtgcaatcggcggcagtaaaccgagggtcacga-ccc Lamprey ctcgctacaacgagacgggctccatcctgccgggagccatcgggggaagcaagccgcgcgtcacca-ccc Mouse ctactgtggtgaaacacatccggacttacaagcagagggacccaggcatcttcgcttgggagatccggga Rat ctactgtagtgaaacacatccggacttacaagcagagggacccaggcatctttgcttgggagatccggga GCF_003668045 ccactgtggtgaaacacatccggacttacaagcagagggacccgggcatcttcgcttgggagatccggga Beaver ccaccgtggtgaagcacatcagaacctacaagcagagggacccaggcatcttcgcctgggagatccggga Squirrel ccaccgtagtgaaacacatccggacctacaagcagagggaccccggcatcttcgcctgggagatccggga Guinea pig ccaccgtggtgaagcacatccggacctacaagcagagggaccccggcatcttcgcctgggagatccgcga Rabbit ccaccgtggtgaagcacatccggacctacaagcagagggacccgggtatcttcgcctgggagatccggga Pika ccacggtggtgaagcacatccggacctacaagcagagggaccccggcatcttcgcctgggagatccgtga Human ccaccgtggtgaaacacatccggacctacaagcagagagaccccggcatcttcgcctgggagatccggga Chimp ccaccgtggtgaaacacatccggacctacaagcagagagaccccggcatcttcgcctgggagatccggga Bonobo ccaccgtggtgaaacacatccggacctacaagcagagagaccccggcatcttcgcctgggagatccggga Gorilla ccactgtggtgaaacacatccggacctacaagcagagagaccccggcatcttcgcctgggagatccggga Rhesus ccaccgtggtgaaacacatccggacctacaagcagagggaccccggcatcttcgcctgggagatccggga Marmoset ccaccgtggtgaagcacatccggacctacaagcagagggaccctggcatcttcgcctgggagatccggga Tarsier ctaccgtggtgaaacacatccggacctacaagcagagggaccccggcatcttcgcctgggagatccggga Bushbaby ctacagtggtgaaacacatccggacctacaagcagagggaccctggcatcttcgcctgggagatccggga Tree shrew ccacagtagtgaaacacatccggacctacaagcagagggaccccggcatcttcgcctgggagatccggga Malayan flying lemur ccaccgtggtgaaacacatccggacctacaagcagagggaccccggcatcttcgcctgggagatccggga Pig ccaccgtggtgaagcacatccggacctacaagcagagggatcccggcatcttcgcctgggaaatacggga Dolphin ccactgtggttaagcacatccggacctacaagcagagggaccccggcatcttcgcctgggagatacggga Cow ccaccgtggtgaagcacatccggacctacaagcagagagaccccggcatcttcgcctgggagatacggga Sheep ccaccgtggtgaagcacatccggacctacaagcagagagaccccggcatcttcgcctgggagataaggga Horse ctaccgtggtgaagcacatccggacctacaagcagagggaccccggcatcttcgcctgggagatccggga Chinese pangolin ccaccgtggtgaagcacatccggacctacaagcagagggaccccggcatctttgcctgggagatccggga Dog ccaccgtggtgaagcacatccggacctacaagcaaagggatcctggcatctttgcctgggaaatccggga Hawaiian monk seal ccaccgtggtgaagcacatccggacctacaagcaaagggaccctggcatctttgcctgggaaatccggga Hedgehog ccaccgtggtgaagcacatccggacctacaagcagagggaccccggcatcttcgcctgggagatccggga Shrew ccaccgtggtgaagcacatccggacctacaagcagagggacccgggcatcttcgcctgggagatccggga Elephant ccaccgtggtgaaacacatccggacctacaagcagagggaccccggcatcttcgcctgggagattcggga Tenrec ccaccgtggtgaaacacatccggacctacaagcagagggaccccggcatctttgcctgggagattcggga Opossum ccacagtagtgaaacatatccggacctacaagcagagggacccaggaatctttgcctgggagatacgcga Chicken ccacggtggttaaacatatccggacctacaaacaaagggatccgggcatcttcgcctgggagatccggga X. tropicalis ccactgtggtcaaacacatacggacttacaagcagagggacccgggcatcttcgcttgggagatcaggga Zebrafish caaacgtagtcaagcacattaggacttacaagcaacgggaccctggtattttcgcatgggagattcgaga Lamprey ccaacgtggtcaaccacatccgcacgtacaagcagcgagacccgggaatcttcgcgtgggaaatccgcga Mouse ccgcctgctggcggatggcgtgtgcgacaagtacaacgtgccctcggtgagttccatcagccgtattctg Rat ccgcctgctggcggatggcgtgtgcgacaagtacaacgtaccctctgtgagttccatcagccggattctg GCF_003668045 ccgcctgctggcggacggcgtgtgcgacaagtacaacgtgccctcggtgagttccatcagccggattctg Beaver ccgcctgctggcggacggcgtgtgcgacaagtacaacgtgccctcggtgagttccatcagccgcattctg Squirrel ccgcctgctggcggacggcgtgtgcgacaagtacaacgtgccctcggtgagttccatcagtcgcattctg Guinea pig ccgcctgctggccgacggcgtgtgcgacaagtacaacgtgccctcggtgagttccatcagccgcattctg Rabbit ccgcctgctggcggacggcgtgtgtgacaagtacaacgtgccttcggtgagctccatcagccgcatcctg Pika ccgcctgctggcggacggcgtgtgcgacaagtacaacgtgccctcggtcagctccatcagccgcatcctg Human ccgcctgctggcggacggcgtgtgcgacaagtacaatgtgccctccgtgagctccatcagccgcattctg Chimp ccgcctgctggcggacggcgtgtgcgacaagtacaatgtgccctccgtgagctccatcagccgcattctg Bonobo ccgcctgctggcggacggcgtgtgcgacaagtacaatgtgccctccgtgagctccatcagccgcattctg Gorilla ccgcctgctggcggacggcgtgtgcgacaagtacaatgtgccctccgtgagctccatcagccgcattctg Rhesus ccgcctgctggcggacggtgtgtgcgacaagtacaacgtgccctccgtgagctccatcagccgtattctg Marmoset ccgcctgctggcggacggtgtgtgcgacaagtacaacgtgccctcggtgagctccatcagccgcattctg Tarsier ccgcctgctggcggacggcgtgtgcgacaagtacaacgtgccctcggtgagctccatcagccgcattctg Bushbaby ccgcctgctggcggacggcgtgtgcgacaagtacaacgtgccctcggtgagctccatcagccgcattctg Tree shrew ccgcctgctggccgacggcgtatgcgacaagtacaacgtgccctctgtgagctccatcagccgcatcctg Malayan flying lemur ccgcctgctggcagacggcgtgtgcgacaagtataacgtgccctcggtgagctccataagccgcattctg Pig ccgcctgctggcggatggagtgtgtgacaagtacaatgtgccctcggtgagctccatcagccgcatcctg Dolphin ccgcctactggcggacggcgtgtgtgacaagtacaacgtgccctcggtgagctctatcagccgcatcctg Cow ccgcctgctggcggacggcgtgtgtgacaagtacaacgtgccctcggtgagctccatcagccgcatactg Sheep ccgcctactggcggacggcgtgtgtgacaagtacaacgtgccctcggtgagctccatcagccgcatcctg Horse tcgcctgctggcagacggcgtgtgcgacaaatacaacgtaccctcggtgagctccatcagccgcatcctg Chinese pangolin ccgcctgctggcggacggcgtatgtgacaagtacaatgtgccctcggtgagctctatcagtcgcatccta Dog ccgcctgctggcggacggcgtgtgtgacaagtacaacgtgccctcggtgagctccatcagccgcatcctg Hawaiian monk seal ccgcctgctggcggacggcgtgtgtgacaagtacaacgtgccctcggtgagctccatcagccgcatcctg Hedgehog tcgcctgttggccgacggcgtgtgtgacaagtacaacgtgccctcggtgagctccatcagccgcatcctg Shrew ccgcctgctggctgacggcgtgtgcgacaagtacaacgtgccttcggtgagctccattagccgcatcctg Elephant ccgcctgctggctgacggcgtgtgtgacaagtacaatgtgccctcggtgagctccatcagccgcatcctg Tenrec ccgcctgctggcggacggcgtgtgcgacaaatacaacgtgccttcggtgagctctatcagccgtatcctg Opossum tcgtttgttagcagacggtgtgtgtgacaagtacaacgttccttcagtcagttccatcagccgaatcctg Chicken tcgcctgctggccgacggcgtgtgcgacaagtacaacgtgccgtcggtcagctctatcagccgcatcctc X. tropicalis caggctgctggcagatggggtgtgcgacaagtacaacgtcccctcggtcagctccatcagccggatccta Zebrafish cagactgctcgcggacggcgtatgtgataaatttaatttgccctctgtcagctcaattagtaggattctc Lamprey caagctgctcgccgacggcgtctgcgacaaatacaacgtgccctccgtgagctccatcagccgcatcctg Mouse cgcaacaagatcggcaacttg--------gcccagcagggtc----------attacgactcatacaagc Rat cgcaacaagatcggcaacttg--------gcccagcagggtc------------tacg--tcctataagc GCF_003668045 cgcaacaagatcggcaacttg--------gcccagcaggccc----------actacgactcatacaagc Beaver cgcaacaagatcggcaacttg--------gcccagcaggggc----------attacgactcatacaagc Squirrel cgcaacaagatcggcaacttg--------gcccaacagggtc----------attacgactcatacaagc Guinea pig cgcaacaagatcggcaacttg--------gcccagcaaagcc----------attatgattcgtacaagc Rabbit cgcaacaagatcggcaacttg--------gcccagcagggcc----------actacgactcctacaagc Pika cgcaacaagatcggcaacctg--------gcccagcagggcc----------attacgactcctacaagc Human cgcaacaagatcggcaacttg--------gcccagcagggtc----------attacgactcatacaagc Chimp cgcaacaagatcggcaacttg--------gcccagcagggtc----------attacgactcatacaagc Bonobo cgcaacaagatcggcaacttg--------gcccagcagggtc----------attacgactcatacaagc Gorilla cgcaacaagatcggcaacttg--------gcccagcagggtc----------attacgactcatacaagc Rhesus cgcaacaagatcggcaacttg--------gcccagcagggtc----------attacgactcatacaagc Marmoset cgcaacaagatcggcaacttg--------acccagcagggtc----------attacgactcgtacaagc Tarsier cgcaacaagatcggcaacttg--------gcccagcagggtc----------actacgactcgtacaagc Bushbaby cgcaacaagatcggcaacttg--------gcccagcagggtc----------attacgattcgtacaagc Tree shrew cgcaacaagatcggcaacttg--------gctcagcagggcc----------attacgactcctacaagc Malayan flying lemur cgcaacaagatcggcaacttg--------gcccagcagggcc----------attacgactcatacaagc Pig cgcaacaagatcggcaacttg--------gcccaacagggcc----------attacgactcatacaaac Dolphin cgcaacaagatcggcaacttg--------gcccaacagggcc----------attacgactcatacaagc Cow cgcaacaagatcggcaacttg--------gcccaacagggcc----------attacgactcctacaagc Sheep cgcaacaagatcggcaacttg--------gcccaacagggcc----------attacgactcctacaagc Horse cgtaacaagatcggcaacttg--------gcccaacagggcc----------attacgactcattcaaac Chinese pangolin cgcaacaaaatcgggaacttg--------gcccaacagggcc----------attacgactcatacaagc Dog cgcaacaagatcggcaacttg--------gctcaacagggcc----------attacgactcgtacaagc Hawaiian monk seal cgcaacaagatcggcaacttg--------gctcaacagggcc----------attacgactcatacaagc Hedgehog cgcaacaagatcggcaacttg--------gcccagcagagcc----------actacgactcgtacaagc Shrew cgcaacaagatcggcaacttg--------gcccaacagagcc----------actacgactcctacaagc Elephant cgcaacaagatcggcaacctg--------gcccagcagggcc----------actacgactcatacaagc Tenrec cgcaacaagatcggcaacctg--------gctcagcagggcc----------actacgactcctacaaac Opossum cgcaacaagattggtaacctg--------tctcagcagagcc----------agtacgactcttacaaac Chicken cgcaacaagatcggaaacctg--------tcccagcagggcc----------actacgagtcctacaagc X. tropicalis cggaataagatcgggaacctg--------gcccaacagaacc----------actatgagagccacaaac Zebrafish cgcaacaagatcgggaatctg--------tctcaacagaacc----------agtacgagtcgagcaaac Lamprey cgcaacaagatcggcaacctgtcgcagccgcccaacgcgggcagctcctcgcactacgacggctccaagc Mouse agca-c---cagcccgcgccgcagcccgcgctgccctacaaccacatttactcatatcccagtcccatca Rat agca-c---cagccagcgccgcagcccgcgctgccctacaaccacatctactcctaccccagtcccatca GCF_003668045 agca-c---cagcctgcgccacagcccgcgctgccctacaaccacatctactcgtaccccagtcccatcg Beaver agca-c---cagccggcgccgcagcctgcgctgccctacaaccacatctattcgtaccctagtcccatca Squirrel agca-c---cagcccgcgccgcagcctgcgcttccctacaaccacatctactcataccccagtcccatca Guinea pig agca-c---cagccggcgccacagcctgcgctgccctacaaccacatctactcgtatcctagtcccatca Rabbit agca-c---cagccggcgccgcagcccgcgctgccctacaaccacatctactcgtaccccagccccatta Pika agca-c---cagcccgcgccgcagcccgcgctgccctacaaccacatctactcgtaccccagccccatca Human agca-c---cagccgacgccgcagccagcgctgccctacaaccacatctactcgtaccccagccctatca Chimp agca-c---cagccgacgccgcagccggcgctcccctacaaccacatctactcgtaccccagccctatca Bonobo agca-c---cagccgacgccgcagccagcgctcccctacaaccacatctactcgtaccccagccctatca Gorilla agca-c---cagccgacgccgcagccagcgctgccctacaaccacatctactcgtaccccagccctatca Rhesus agca-c---cagccgacgccgcagccagcgctgccctacaaccacatctactcgtaccccagccctatca Marmoset agca-c---cagccggcaccgcagccagcgctgccctacaaccacatctactcataccccagtcctatca Tarsier agca-c---cagccggcgccgcagccggcgctgccctacaaccacatctactcgtaccccagccccatca Bushbaby agca-c---cagccggcgccccagccagcgctgccgtacaaccacatctactcgtaccccagccccatca Tree shrew agca-c---cagccggcgcctcagccagcgctgccctacaatcacatctattcgtaccccagccccatca Malayan flying lemur agca-c---cagccagcaccgcagcctacgctgccctacaaccacatctactcgtaccccagccccatca Pig agca-c---cagccggcaccgcagccggcgctgccctataaccacatctattcgtaccccagccccattt Dolphin agca-c---caaccggcgccgcagccggcgctgccctataaccacatctactcgtaccccagccccatca Cow agca-c---caaccggcgcctcagccggcgctaccctataaccacatctactcgtaccccagccccatca Sheep agca-c---caaccggcgccgcagccggcgctaccctataaccaccccccccccccccccacgcc----- Horse agca-c---cagccggcgccgcagccggcgctgccctataatcacatctactcgtaccccagccccatca Chinese pangolin agca-c---cagcctgcaccgcagccggcgctgccctataaccacatctactcataccccagccccatca Dog agca-c---cagccggcgccacagccggcgctgccctataaccacatctactcgtaccccagccccatca Hawaiian monk seal agca-c---cagccggcaccacagccggcgctgccctataaccacatctactcgtaccccagccccatca Hedgehog agca-c---cagcccgcgccgcagcctgcgctgccctacaaccacatctactcgtaccccagccctatct Shrew agca-c---caacccgcgccgcagcctgcgctgccctacaaccacatctactcgtaccccagccccatca Elephant agca-a---cagccggcgccgcagcccacgctgccctacaaccacatctattcgtaccctagccccatca Tenrec agca-c---cagccggcgccacagcccgcgctaccctacaaccacatttactcctaccccagccccataa Opossum agca-t---cagccaccaccgcagcccgccttgccttataaccatatatattcctatccaagtcccatta Chicken agca-t---cagccgcccccgcagccgcccctgccctacaaccacatctactcctaccccagccccatcg X. tropicalis agcacc---cggccgccgcc----tccgcactcccttacaaccacctgtattcctaccccagccccatag Zebrafish aggc-ctctcatcctcaacctcaacccaccataccctacaaccacctgtattcgtatccaactccaatag Lamprey agca-ggggcagtcgaccccgtcgggcgcccttccgtacaatcacatttacgcgtacccaagcgccatgg Mouse ---cggcggcagcagctaaggtgcctacaccacctggggtgccggccat--------------------- Rat ---cggcggcagctgctaaggtgcccacaccacctggggtgccggccat--------------------- GCF_003668045 ---ccgctgcggctgctaaggtgcctacaccacctggggtgcccgccat--------------------- Beaver ---ccgcggcggccgccaaggtgcccacgccacctggtgtgcccgccat--------------------- Squirrel ---cggcggctgccgccaaggtgcccacgccacccggggtgcccgccat--------------------- Guinea pig ---cggcggcggcagccaaggtgcccacgccacccggggtgcctgccat--------------------- Rabbit cggcggctgcggccgccaaggtgcccacgccacccggggtgcccgccat--------------------- Pika ---cggccgcggccgccaaggtgcccacgccacccggggtgcccgctct--------------------- Human ---cggcggcggccgccaaggtgcccacgccacccggggtgcctgccat--------------------- Chimp ---cggcggcggccgccaaggtgcccacgccacccggggtgcctgccat--------------------- Bonobo ---cggcggcggccgccaaggtgcccacgccacccggggtgcctgccat--------------------- Gorilla ---cggcggcggccgccaaggtgcccacgccacccggggtgcctgccat--------------------- Rhesus ---cggcggcggccgccaaggtgcccacgccacccggggtgcctgccat--------------------- Marmoset ---cggcggcggctgccaaggtgcccacaccacccggggtgcctgccat--------------------- Tarsier ---cggcggcggccgccaaggtgcccacgcctcccggcgtgcccgccat--------------------- Bushbaby ---ctgcggcggccgccaaggtgcccacgccgcccggtgtgcccgccat--------------------- Tree shrew ---cggcggcggctgccaaggtgcccacgccacccggggtgcccgccat--------------------- Malayan flying lemur ---cggcggcggccgccaaggtgcccacgccacccggggtgcccgccat--------------------- Pig ---cagcggcc---gctaaggtgcccactccgcccggggtgcccgccat--------------------- Dolphin ---cggcggccgcggctaaggtgcccacgccgcccggcgtgcccgccat--------------------- Cow ---cggcggccgccgctaaggtgcccacgccgccgggggtgcccgccat--------------------- Sheep ------cggccgccgctaaggtgcccacgccgccgggggtgccagccat--------------------- Horse ---ctgcggccaccgctaaggtgcccacgccacccggggtgcccgccat--------------------- Chinese pangolin ---cggctgccgcggctaaggtgcccacgccgcccggggtgccagccat--------------------- Dog ---cggcggccgcagctaaggtgcccacgcctcccggggtgcctgccat--------------------- Hawaiian monk seal ---cggcggccgcagctaaggtacccacgccgcccggggtgcctgccat--------------------- Hedgehog ---cggcagccacggccaaggggcccacgccgcccggggtgcccgccct--------------------- Shrew ---cggccgcggccgctaaggtgcccacgccgcccggcgtgcccgccat--------------------- Elephant ---cggcggcggccgccaaggtacccacgccgcccggggtgccagccat--------------------- Tenrec ---cggcggcggccgccaaggtacccacgccgcccggggtcccagccat--------------------- Opossum ---ctgccgcagcagccaaagtacccactcctcccggagtgcctggaat--------------------- Chicken ---ctgccgcgggagccaaggtgcccacgcctccgggagtgcctgccat--------------------- X. tropicalis ---cggcaggg---gccaaggtgcccacccctcctggaatgccctccat--------------------- Zebrafish ---cagccgctgggactaaagtaccaactccgcctggcatgcccactct--------------------- Lamprey ------------ctcccaaggtgcccagccccgccgcgatgcccggggtaggagtcggggtcggggtggg Mouse ccccggatcggtggccttg Rat cccaggatccgtggccctg GCF_003668045 ccccggttccgtggctatg Beaver cccgggttcagtggccatg Squirrel ccccggctcggtggccatg Guinea pig ccctggctcggtggccatg Rabbit ccccggttcggtggccatg Pika cccagcttcggtggccatg Human ccccggttcggtggccatg Chimp ccccggttcggtggccatg Bonobo ccccggttcggtggccatg Gorilla ccccggttcggtggccatg Rhesus ccccggttcggtggccatg Marmoset tcccggttcggtggccatg Tarsier ccccggctcggtggccctg Bushbaby tcccggttctgtggccatg Tree shrew ccccggctcggtggccatg Malayan flying lemur cccaggttcggtggccatg Pig cccagggtcagtggccatg Dolphin ccccggctcagtggccatg Cow ccccggctcagtggccatg Sheep ccccggctcagtggccatg Horse ccccggctcagtggccatg Chinese pangolin ccccggctctgttgccatg Dog ccccggctcggtggccatg Hawaiian monk seal ccccggctcggtggccatg Hedgehog ccccggctcggtggccatg Shrew ccccggctccgtggccatg Elephant ccccggctcggtggccatg Tenrec ccccggctcggtggctctg Opossum tcctggcaacatggccatg Chicken ccctggtaccatggccatg X. tropicalis ccctggcaccatgggcatg Zebrafish tcctggacatatggcaatg Lamprey catgggctccatgtgcatg Alignment block 18 of 287 in window, 56743919 - 56743962, 44 bps B D Mouse ccgcgcacctggccctcctctcactccgtcacggacattctggg B D Rat ccgcgcacctggccctcctctcactccgtcaccgacatcctggg GCF_003668045 ccgcgcacctggccctcctctcactctgtcaccgacatcctggg Beaver ccgcgcacctggccctcctcgcactctgtcaccgacatcctggg B D Squirrel ccgcgcacctggccctcttcgcactctgtcaccgacatcctggg B D Guinea pig ccgcgcacctggccttcctcgcattctgtcaccgacattctggg B D Rabbit ccgcgcacctggccctcttcacactctgtcacagacatcctggg B D Pika cctcgcacctggccctcctcgcactccgtcaccgatatcctggg B D Human ccgcgcacctggccctcctcgcactccgtcaccgacatcctggg B D Chimp ccgcgcacctggccctcctcgcactccgtcaccgacatcctggg B D Bonobo ccgcgcacctggccctcctcgcactccgtcaccgacatcctggg B D Gorilla ccgcgcacctggccctcctcgcactccgtcaccgacatcctggg B D Rhesus ccgcgcacctggccctcctcgcactccgtcacagacatcctggg B D Marmoset ccgcgcacctggccttcctcgcactccgtcactgacatcctggg B D Tarsier ccgcgcacctggccctcctcgcactcggtcaccgacatcctggg B D Bushbaby ccgcgcacctggccctcctcgcactcggtcactgacatcctggg B D Tree shrew ccgcgcacctggccctcctcgcactcggtcactgacatcctggg B D Malayan flying lemur ccgcgcacctggccctcctcgcattctgtcaccgacatcctggg B D Pig ccgcgcacctggccctcctcccactccgtcaccgacatcctagg B D Cow ccgcgcacctggccctcctcgcactccgtcaccgacatcctggg B D Sheep ccgcgcacctggccctcctcgcactccgtcaccgacatcctggg B D Horse ccgcgcacctggccttcctcccattccgtcaccgacatcctggg B D Chinese pangolin ccccgcacctggccctcctcccactccgtcaccgacatcctggg B D Dog ccccgtacctggccctcctcccattccgtcaccgacatcctggg B D Hawaiian monk seal ccccgtacctggccctcctcccattccgtcaccgacatcctggg B D Hedgehog ccgcgcacctggccctcctcacactcggtcaccgacatcctggg B D Shrew ccgcgcacctggccctcctctcactccgtcaccgacatcctggg B D Elephant ccgcgcacctggccctcctcgcattcggtcaccgatatactggg B D Tenrec ccgcgcacctggccctcctcgcactccgtcacggacatcctggg B D Opossum cctagaacctggccctcttcgcactctgtcacggatatcctggg B D Chicken cctcgcacctggccttcgtcccactcggtgacggacatcctggg B D X. tropicalis ccaaggacctggccctcttcccattcggttacagacatccttgg B D Zebrafish cataggatatggccttcctctcattctgttacagatattctggg B D Lamprey cccagggcatggccctcgtcccactccgtgagcgacatcctggg Alignment block 19 of 287 in window, 56743963 - 56743990, 28 bps B D Mouse catccgctccatcaccg---accaaggtaag B D Rat catccgttccatcaccg---accaaggtaag GCF_003668045 catccgctccatcaccg---accaaggtaag Beaver catccgctccatcaccg---accaaggtaag B D Squirrel catccgctccatcaccg---accaaggtaag B D Guinea pig catccgctccatcaccg---accaaggtaag B D Rabbit catccgctccatcaccg---accaaggtaag B D Pika catccgttccatcaccg---accaaggtaag B D Human catccgctccatcaccg---accaaggtagg B D Chimp catccgctccatcaccg---accaaggtagg B D Bonobo catccgctccatcaccg---accaaggtagg B D Gorilla catccgctccatcaccg---accaaggtagg B D Rhesus catccgctccatcaccg---accaaggtagg B D Marmoset catccgctccatcaccg---accaaggtagg B D Tarsier catccgctccatcaccg---accaaggtagg B D Bushbaby gattcgctccatcaccg---accaaggtagg B D Tree shrew catccgctccatcaccg---accaaggtaag B D Malayan flying lemur catccgctccatcaccg---accaaggtaag B D Pig tattcgctccatcaccg---accaaggtaag B D Cow cattcgctccatcaccg---accaaggtaag B D Sheep cattcgctccatcaccg---accaaggtaag B D Horse cattcgctccatcaccg---accaaggtaag B D Chinese pangolin cattcgctccatcaccg---atcaaggtaag B D Dog cattcgctctatcaccg---accaaggtaag B D Hawaiian monk seal cattcgctctatcaccg---accaaggtaag B D Hedgehog cattcgttccatcaccg---accaaggtaag B D Shrew cattcgctccatcaccg---accaaggtagg B D Elephant catccgctccatcaccg---accaaggtaag B D Tenrec catccgctccatcaccg---accaaggtca- B D Opossum aatccgctccatcacag---accaaggtaaa B D Chicken catccgctccatcacgg---accaaggtgag B D X. tropicalis gattcgctccatcaccg---accaaggtaag B D Zebrafish cattcgatcaataacggagcagcaaagtaag Inserts between block 19 and 20 in window B D Zebrafish 5411bp Alignment block 20 of 287 in window, 56743991 - 56743992, 2 bps B D Mouse ga- B D Rat gg- GCF_003668045 gc- Beaver g-- B D Squirrel g-- B D Guinea pig g-- B D Rabbit g-- B D Pika g-- B D Human g-- B D Chimp g-- B D Bonobo g-- B D Gorilla g-- B D Rhesus g-- B D Marmoset g-- B D Tarsier g-- B D Bushbaby g-- B D Tree shrew g-- B D Malayan flying lemur g-- B D Pig g-- B D Cow g-- B D Sheep g-- B D Horse g-- B D Chinese pangolin g-- B D Dog g-- B D Hawaiian monk seal g-- B D Hedgehog g-- B D Shrew g-- B D Elephant g-- B D Tenrec g-- B D Chicken g-- B D X. tropicalis a-a B D Zebrafish === B D Opossum --- Inserts between block 20 and 21 in window B D X. tropicalis 1680bp Alignment block 21 of 287 in window, 56743993 - 56743993, 1 bps B D Mouse g- B D Rat g- GCF_003668045 g- Beaver g- B D Squirrel g- B D Guinea pig g- B D Rabbit g- B D Pika g- B D Human g- B D Chimp g- B D Bonobo g- B D Gorilla g- B D Rhesus g- B D Marmoset g- B D Tarsier g- B D Bushbaby g- B D Tree shrew g- B D Malayan flying lemur g- B D Pig c- B D Cow g- B D Sheep g- B D Horse g- B D Chinese pangolin g- B D Dog g- B D Hawaiian monk seal g- B D Hedgehog a- B D Shrew a- B D Elephant t- B D Tenrec t- B D Chicken ag B D Zebrafish == B D X. tropicalis == B D Opossum -- Inserts between block 21 and 22 in window B D Chicken 248bp Alignment block 22 of 287 in window, 56743994 - 56744004, 11 bps B D Mouse ctcaga-------ggcag B D Rat ctcgga-------agcag GCF_003668045 ctcaga-------ggcgg Beaver tccagagac--cgggcgg B D Squirrel ctcagagac--ctagcgt B D Guinea pig ctcagagac--cggactt B D Rabbit cacggaggc--cgggcgg B D Pika cttgaaggt--ccgacgt B D Human ctcagaggc--tgggcgt B D Chimp ctcagaggc--tgggcgt B D Bonobo ctcagaggc--tgggcgt B D Gorilla ctcagaggc--tgggcgt B D Rhesus ctcagaggc--tggtcat B D Marmoset ctcagagac--agggcgt B D Tarsier ctcggaggc--cgggcgt B D Bushbaby ctcagaggc--tggacgt B D Tree shrew ctcggg------------ B D Malayan flying lemur ctcagaggc--ctagtgt B D Pig tcaggggct--tg----- B D Cow cacgggggc--cg----- B D Sheep cccggggcc--cg----- B D Horse ctcgaggg---cc----- B D Chinese pangolin ctcaggga---gg----- B D Dog ctcgggggc--cg----- B D Hawaiian monk seal ctcaggggc--cg----- B D Hedgehog ccccagggc--ca----- B D Shrew ctctcgggc--cg----- B D Elephant ctccagggc--cgggggt B D Tenrec ctccggggttgcgggggt B D Zebrafish ================== B D X. tropicalis ================== B D Opossum ------------------ B D Chicken ================== Inserts between block 22 and 23 in window B D Rabbit 2bp B D Pika 2bp B D Pig 9bp B D Cow 10bp B D Sheep 10bp B D Horse 10bp B D Chinese pangolin 10bp B D Dog 10bp B D Hawaiian monk seal 11bp B D Hedgehog 9bp B D Shrew 13bp B D Elephant 5bp B D Tenrec 11bp Alignment block 23 of 287 in window, 56744005 - 56744209, 205 bps B D Mouse tgtgcagagcggag--------tgggttcctgca-cgcgt-tcgggaaccccag-tacct-tcggcct-- B D Rat tgtgctaggcggag--------agcgttcctgca-agcgg-tcgggaatcccag-tacct-tcggcct-- GCF_003668045 agtgctgagcagag--------tgggttcctgca-cgctg-tcgggaaccccag-aacct-tcggcct-- Beaver gaaggtgtgcaaag--------cctgttcccgcacctccc-gcggggatcccag-tgtct-gtagcct-- B D Squirrel caggacgtgcagag--------cctgtcttcgca-ccccc-gcggggatcccag-tgtct-gcggcct-- B D Guinea pig gaggatgtgcacgg--------cgtgtccccaga-ctccc-gggggaatcctat-tatct-gcggcctgc B D Rabbit gaaagtgttcggaa--------cctgcctgcgcc-cttgc-gctgggaccccgg-cgtct-gcggcct-c B D Pika gagactagctgcgagcccctttcctgcccgctca-ccgcc-gaggggtccccag-tgcct---------- B D Human gtggatgtgcagcg--------tctgcccccgca-ctctc-gcggaggtcccag-tatct-gcagcct-- B D Chimp gtggatgtgcagcg--------tctgcccccgca-ctctc-gcggaggtcccag-tatct-gcagcct-- B D Bonobo gtggatgtgcagcg--------tctgcccccgca-ctctc-gcggaggtcccag-tatct-gcagcct-- B D Gorilla gtggatgtgcagcg--------tctgcccccgca-ctctc-gcggaggtcccag-tatct-gcagcct-- B D Rhesus gtgaatgtgcagcg--------tctgcttccgca-ctcca-gcggaggtaccag-tttct-gcggcct-- B D Marmoset gtggatgtgcagca--------tctgcctccgca-ttccc-gcggaggtcccac-tatct-gcggcct-- B D Tarsier gtagatgtgcggag--------tgcaccccc--------c-gcagcgatcccag-ggtct-gcggcct-- B D Bushbaby gtggatgtgcagag--------cctgaccccgca-cccct-gcggagagcccag-tatctcgcggcct-- B D Tree shrew --------gcagag--------cttgcctccgcg-cccc--tcggggatcccag-tatct-gcggcct-- B D Malayan flying lemur gtggatgcgcagag--------cctgcccccgca-cccccgcgggggaccccag-tattt-gcggcct-- B D Pig -----tgtgctgag--------cctccctcctca-ccctc-tctagggtcttta-tattt-gg------- B D Dolphin -----tgtgcagag--------cttcccgccgca-gcctc-tctggggtctctg-tatct-gcggcct-- B D Cow -----tgtgcagag--------cttccctcctca-acctc-tctggggttaccg-catct-gc-gtct-- B D Sheep -----tgtgcagag--------cttcgctccgca-ccctc-tcaggggttaccg-catct-gc-gcct-- B D Horse -----tgtgcagag--------cctccctccgca-cccta-gctggggtttctc-tatct-gaggcct-- B D Chinese pangolin -----cgtccagag--------cc-ccctccaca-cccgc-gctggggtc-------ttt-gtggtct-- B D Dog -----tgtgcagag--------ccttcctctgca-ccctc-gctggtgtctccg-tatct-gcggcct-- B D Hawaiian monk seal -----tgtgcagag--------cctccctctgca-ccctc-gctgatgtctctgttatct-gcggcct-- B D Hedgehog ----------------------------tggatg-cct---------gtgcagg-cgcct-tgggtct-- B D Shrew -----tgcagagag--------cttttttgggag-ccctg-gttgg-ggtctgg-cccct-cgggtct-- B D Elephant -----tgtgcagcg--------cctcc--------ccttc-gctgaggttccag-tatct-gaggcct-- B D Tenrec -----tgtgccgca--------cctcc--------tcttc-gcggagataccgg-gatct-gaggccg-- B D Opossum --tttggaccgtgg--------cgcgcctggggc-ctgga-agggagggaatag-tagca-acgatat-- B D Zebrafish ====================================================================== B D X. tropicalis ====================================================================== B D Chicken ====================================================================== Mouse ct--ag--c-gag-tgtcta----------tccc-accacctgtggc--tctttt------cttttggaa Rat ct--at--c-gag-tgtcta----------tccc-accacctgtggc---ctttt------cttttggaa GCF_003668045 ct--gg--c-gag-tgtcta----------tccc-accacctgtggc---ttttt------cttttggaa Beaver ct--gg--c-cgg-tgtcta----------tccc-accacctgaggc----cttt------cttttggaa Squirrel cg--gg--ctcgg-tgtcca----------tccc-accacctgaggctttttttt------cctttggaa Guinea pig ct--gg--c-ccg-ggtcga----------tgcc-accacttgaggc---ttttt------cctttggag Rabbit cc--gg--c-ccg-ggtcca----------tccc-accacccgaggc---ctttt------cctttggaa Pika ---------------gtcca----------accc-gccacccgaggc---ctttt------cctttggaa Human ca--gg--gacac-tgtctt----------tccc-accacctgaggc---ttttt------cctttggaa Chimp ca--gg--gacac-tgtctt----------tccc-accacctgaggc---ttttt------cctttggaa Bonobo ca--gg--gacac-tgtctt----------tccc-accacctgaggc---ttttt------cctttggaa Gorilla ca--gg--gacac-tgtctt----------tccc-accacctgaggc---ttttt------cctttggaa Rhesus cc--gg--gaccc-tgtctt----------tccc-accacctaaagc---ttttt------cctttggaa Marmoset ct--gg--gaccc-tgtctt----------tcct-atcacctgaggc---ttttt------cctttggaa Tarsier cc--gg--gcccg-tgtctg----------tccc-accacctgaggc--tttttt------cctttggaa Bushbaby cc---g--gcccg-tgtcta----------tccc-accacctgaggc---ttttt------cctttggaa Tree shrew tc--ga--g-ccg-agctga----------acct-gccatatgaggt---ttatt------cctttggaa Malayan flying lemur cg--gg--gccct-tgttta----------tccc-accacctgaggc---ttttt------cctttggaa Pig ----gg----cca-cgtcta----------tctc-accacctgaggc---ttttt------cctttggaa Dolphin ccgggggggcccg-cgtcta----------tccc-accgcctgaggc---ttctt------cctttggga Cow cc--aggggcccg-cgtctg----------tccc-accacctgagac---ttttt------cctttggaa Sheep cc--aggggcccg-cgtctg----------tccc-accacctgagac---gtttc------cctttggaa Horse cc--gg--gcccc-cgtccg----------tccc-accaccggaggc---ctttt------cctttggaa Chinese pangolin cc--gg--ttctcgaatcta----------tcct-accacctgaggc---tttgt------cctttggaa Dog cg--gg--gcccg-cgccta----------tccc-accacctgaggc---ttttt------cctttcgaa Hawaiian monk seal cc--gg--gcccg-ggtcta----------tccc-accacctgaggc---ttttt------cctttggaa Hedgehog tg--aa----cca-gttcag--------------------------------------------ttggaa Shrew cc--ga--gccca-ggcccgtgtccgtctcaccc-actacgcgaggc---ttctc------tctttggaa Elephant cc--ag--gcctg-agtatg----------ttctaatcacctgaggc---ttttg------cattt-gaa Tenrec cc--ag--gcccc-tgccca----------tgcc-accacctggcct---ttttg------cctttggaa Opossum tc--at--------cttctc----------gcct---catcctagcc---tttctttaagactttcaaac Zebrafish ====================================================================== X. tropicalis ====================================================================== Chicken ====================================================================== Mouse acctaaggagtcttcc-cag------------------------g------------------------- Rat acctaaggagtcgtcc-cag------------------------g------------------------- GCF_003668045 acctaaggagtcttcc-cag------------------------g------------------------- Beaver acttcagtagtcttcc-cat------------------------g------------------------- Squirrel acgtaaggagacttcc-cag------------------------g------------------------- Guinea pig tcataaggagtcttcc-cag------------------------g------------------------- Rabbit acgaaaggcggcttcc-cag------------------------g------------------------- Pika gcgtgaggaggcttcc-cag------------------------g------------------------- Human acgtaaggagtcttcc-tag------------------------g------------------------- Chimp acgtaaagagtcttcc-tag------------------------g------------------------- Bonobo acgtaaagagtcttcc-tag------------------------g------------------------- Gorilla acgtaaggagtcttcc-tag------------------------g------------------------- Rhesus aagtaaggagtcttcc-tag------------------------g------------------------- Marmoset acgtaaggagtcttcc-tag------------------------g------------------------- Tarsier acgtaaggagtcttcc-cag------------------------g------------------------- Bushbaby acgtaaggagtcttcc-cag------------------------g------------------------- Tree shrew atgtaaggagtcttcc-cag------------------------g------------------------- Malayan flying lemur acttcaggagtcttcc-cag------------------------g------------------------- Pig atgtaaggagtcttct-gag------------------------a------------------------- Dolphin acgtaaggggccctcc-cat------------------------g------------------------- Cow acgtcaagagtcctcc-cag------------------------g------------------------- Sheep acgtcaggagtcctcc-cag------------------------g------------------------- Horse atgtaagcagtcctcc-cag------------------------g------------------------- Chinese pangolin ac-taaagagtccttc-cag------------------------g------------------------- Dog ac-gaaggagtcctcc-cag------------------------g------------------------- Hawaiian monk seal ac-taaggagtcctcc-cag------------------------g------------------------- Hedgehog accgaaggactcctcc-ccg------------------------ggtggtggtggtggagatggtggtgg Shrew acgcaaggagt-cttc-cag------------------------ggcggggggcgt-------------- Elephant ac-taaggagtcctcc-cgg-----------agaggggaggggga------------------------- Tenrec aa-tcaggcgtccttc-tgggggggcggcgcagtgggggtggggg------------------------- Opossum agctttagtgtcttccgcat------------------------g------------------------- Zebrafish ====================================================================== X. tropicalis ====================================================================== Chicken ====================================================================== Mouse ----------gggt-gt--------------------cctgatctcatta------------------ac Rat ----------gggt-gt--------------------cctgatctcatta------------------ac GCF_003668045 ----------gggt-gt--------------------cctgatctcatta------------------ac Beaver ----------gggt-gt--------------------cctgatctcatta------------------ac Squirrel ----------gggt-gt--------------------cctgatctcatta------------------ac Guinea pig ----------gggt-gt--------------------cctgatctcatta------------------ac Rabbit ----------gggg-ac--------------------cctgatctcatta------------------ac Pika ----------ggggtgt--------------------cctgatctcatta------------------ac Human ----------gggt-gt--------------------tctgatctcatta------------------ac Chimp ----------gggt-gt--------------------tctgatctcatta------------------ac Bonobo ----------gggt-gt--------------------tctgatctcatta------------------ac Gorilla ----------gggt-gt--------------------tctgatctcatta------------------ac Rhesus ----------gggt-gt--------------------cctgatctcatta------------------ac Marmoset ----------gggt-gt--------------------cctgatctcatta------------------ac Tarsier ----------gggt-gt--------------------cctgatctcatta------------------ac Bushbaby ----------gggt-gt--------------------cctgatctcatta------------------ac Tree shrew ----------gggt-gt--------------------cctgatctcatta------------------ac Malayan flying lemur ----------gggt-gt--------------------catgatctcatta------------------gc Pig ----------gggt-ga--------------------cctgatctcatta------------------at Dolphin ----------gggt-gt--------------------cctgatctcatta------------------ac Cow ----------gggt-gt--------------------cctgatctcatta------------------ac Sheep ----------gggt-gt--------------------cctgatctcatta------------------ac Horse ----------gggt-gt--------------------cctgatctcatta------------------ac Chinese pangolin ----------gagt-gt--------------------cctgatctcatta------------------ac Dog ----------gggt-gt--------------------cctgatctcatta------------------ac Hawaiian monk seal ----------gggt-gt--------------------tctgatctcatta------------------ac Hedgehog tggtggtagtgggt-gt--------------------cctgatctcatta------------------ac Shrew --gtgtgtgtgggg-gt--------------------cctgatctcatta------------------ac Elephant ----------aggt-gt--------------------cctgctctcatta------------------ac Tenrec ----------tggt-gc--------------------cctgctctcatta------------------ac Opossum ----------ggga-attactgtctcgcgattgcccacctgatcccgttatagaacaggaagatttttat Zebrafish ====================================================================== X. tropicalis ====================================================================== Chicken ====================================================================== Mouse ttgaaactcttgcccctctgtttccttgc--c------------acacacag--tctccagcc--tcatc Rat ttgaaactcttgcccctctgtttccttgccac------------acacacag--tttccagcc--tcatc GCF_003668045 ttgaaactcttgcccctccgtttccttgccac------------acacacag--tctgcagcc--tcatc Beaver ttgaaactcatgcccct-tgtttccttgc--c------------acacacag--tcttctgcc--tcatc Squirrel ttgaaactcacgcccct-cgtttccttgc--c------------acacacag--tctccagcc--tcatc Guinea pig ttgaaacttttgcccct-ggtttccttgc--c------------acacacagtctctcctgcc--tcatc Rabbit tcgaaactcctgcccct--gcttccttgc--c------------acacacag--cctcctgcc--tcatc Pika ttgaaactcctgcccct--gtttccttgc--c------------acacacag--tctcctgcc--tcatc Human ttgaaactcatgcccct-ggtttccttgc--c------------acacacag--tcttctgcc--tcatc Chimp ttgaaactcatgcccct-ggtttccttgc--c------------acacacag--tcttctgcc--tcatc Bonobo ttgaaactcatgcccct-ggtttccttgc--c------------acacacag--tcttctgcc--tcatc Gorilla ttgaaactcatgcccct-ggtttccttgc--c------------acacacag--tcttctgcc--tcatc Rhesus ttgaaactcatgcccct-ggtttccttgc--c------------acacacag--tctcctgcc--tcaac Marmoset ttgaaacgcttgcccct-ggtttccttgc--c------------acacacag--tctcctgcc--tcatc Tarsier tcgaaactcatgcccct-cgtttccttgc--c------------acacacag--tctcctgcc--tcatc Bushbaby ttgaaactcatgcccct-agtttcctcgc--c------------acacacag--tctcctgcc--tcatc Tree shrew ttgaagctcctgcccct-cgtttccttgc--c------------acacacag--tctccagcc--tcatc Malayan flying lemur ttgcaactcatgcccct-agtttccttac--c------------acacacag--tctcctgcc--tcatc Pig gtgaaattcatgccctt-cgtttccttgc--c------------acacacag--tctcctgcc--tcatc Dolphin gtgaaattcatgccctt-cgtttccttgc--c------------acacgcag--tctactgcc--tcatc Cow gtgaaattcatgccctt-cgtttccttgc--c------------acacacag--tctactgcc--tcatc Sheep gtgaaattcatgccctt-cgtttccttgc--c------------acacacag--tctactgcc--tcatc Horse ttgaaattcatgccctt-cgtttccttgc--c------------acacacag--tctcctgcc--tcatc Chinese pangolin ttgaaattcgtgccctc-cgttttcttgc--c------------acacacag--tctcctgcc--tcatc Dog ttgaaattcatgccctc-tgtttccttgc--c------------acacacag--tctcctgcc--tcatc Hawaiian monk seal ttgaaattcatgccctc-cgtttccttac--c------------acacacag--tctcctgcc--tcatc Hedgehog ttgaaattcatgccctt-ccttcccttgc--c------------acacacag--tctcctgcc--tcatc Shrew ttgaaattcatgccctt-cctttccttgc--c------------acacacag--tctcctgcc--tcatc Elephant ttgaaattcatgcctct-cgtttccttgc--c------------acacacag--tctcctgcc--tcatc Tenrec ttgaaattcatgcccct-cgtttccttgc--c------------acccacag--tctcctgcc--tcatc Opossum tgggaagcagtgctccc----ttctctgc--cttctctgtttgaaatcgctg--ttttttccccttcacc Zebrafish ====================================================================== X. tropicalis ====================================================================== Chicken ====================================================================== Mouse tcaaactacca Rat tcaaactacca GCF_003668045 tcaaactgcca Beaver tcaaactacca Squirrel tcaaactacca Guinea pig tcaaactacca Rabbit tcaaactacca Pika tcaaactacca Human tcaaactacca Chimp tcagactacca Bonobo tcaaactacca Gorilla tcaaactacca Rhesus tcaaactatca Marmoset tcaaactacca Tarsier tcaaactacca Bushbaby tcaaactacca Tree shrew tcaaactacca Malayan flying lemur tcaaactacca Pig tcaaactacca Dolphin tcaaacgacca Cow tcaaactacca Sheep tcaaactacca Horse tcaaactacca Chinese pangolin tcaaactacca Dog tcaaactacca Hawaiian monk seal tcaaactacca Hedgehog tcagactccca Shrew tcaaactacca Elephant tcaaactacca Tenrec tcaaactacca Opossum tcaagctact- Zebrafish =========== X. tropicalis =========== Chicken =========== Alignment block 24 of 287 in window, 56744210 - 56744222, 13 bps B D Mouse gacccataacata- B D Rat gacccataacatc- GCF_003668045 gacccataacat-- Beaver gacccataacat-- B D Squirrel gacccataacat-- B D Guinea pig gacccataacat-- B D Rabbit gacccataacat-- B D Pika gagccgtaacat-- B D Human gacccataacat-- B D Chimp gacccataacat-- B D Bonobo gacccataacat-- B D Gorilla gacccataacat-- B D Rhesus gacccataacat-- B D Marmoset gacccataacat-- B D Tarsier gacccataacat-- B D Bushbaby gacccataacat-- B D Tree shrew gacccataacat-- B D Malayan flying lemur gacccgtaacat-- B D Pig gacccataacat-- B D Cow gacccataacat-- B D Sheep ga-ccataacat-- B D Horse gacccataacat-- B D Chinese pangolin gacccataacat-- B D Dog gacccataacat-- B D Hawaiian monk seal gacccataacat-- B D Hedgehog gacccataacat-- B D Shrew gacccataacat-- B D Elephant gacccataacat-- B D Tenrec gaccctgaacat-- B D Opossum ------cagcag-a B D Zebrafish ============== B D X. tropicalis ============== B D Chicken ============== Alignment block 25 of 287 in window, 56744223 - 56744344, 122 bps B D Mouse ccccc---ccc--cccaaacacatggttcgcattttccaccctcccccgcctc-tcgcgcact------- B D Rat ccccc---cccatccccaacacatggttcgcattttccaccctcccccgcctc-tcgcgcact------- GCF_003668045 ---cc---cccatccccaacacatggttcgcattttccaccctcccccgcctc-tcgcgcact----c-- Beaver --ccc---cccatctccaacacatggttcgcattttccaccctcccccgcctc-tcgcggcgc----g-- B D Squirrel ---cc---cccgtccccaacacatggttcgcattttccaccctcccccgcccc-tcgcgctgc----g-- B D Guinea pig ---cc---cccatccccaacacatggttcgcattttccaccctgccccgcctc-tcgcgccgc----g-- B D Rabbit ---cc---cccagccccaacacatggttcgcattttccaccctcccccgcctc-tcgcgccgc----gcc B D Pika --ccc---cccagccctgacacatggttcgcattttccaccctcccccgcctc-tcgcgccgc----gc- B D Human --ccc---cccatccccaacacatggttcgcattttccaccctcccccgcctc-tcgcgccga----g-- B D Chimp --ccc---cccatccccaacacatggttcgcattttccaccctcccccgcctc-tcgcgccga----g-- B D Bonobo --ccc---cccatccccaacacatggttcgcattttccaccctcccccgcctc-tcgcgccga----g-- B D Gorilla --ccc---cccatccccaacacatggttcgcattttccaccctcccccgcctc-tcgcgccga----g-- B D Rhesus --ccc---cccatccccaacacatggttcgcattttccaccctcccccgcctc-tcgcgccaa----g-- B D Marmoset --ccc---cccatccccaacacatggttcgcattttccaccctcccccgcctc-tcgagccga----g-- B D Tarsier --ccc---gccatccccaacacatggttcgcattttccaccctcccccgcctc-tcgcgccgc----a-- B D Bushbaby --ccc---cccattcccaacacatggttcgcattttccaccctcccccgcctc-tcgcgccgc----g-- B D Tree shrew --ccccctcccatccccgacacatggttcgcattttccaccctcccccgcctc-tctctcggc----t-- B D Malayan flying lemur --ccc---cccatccccaacacatggttcgcattttccaccctcccccgcctc-tcgcgccgc----g-- B D Pig --ccc---tccatccctaacacatggttcgcattttccaccctcccccgcctc-tctcgctgc----g-- B D Dolphin --ccc---cccatccccgacacatggttcgcattttccaccctcccccgcctc-gcgcgccgc----c-- B D Cow ---cc---cccatccccaacacatggttcgcattttccaccctcccccgcctc-tcgcgccgc----g-- B D Sheep ---cc---cccatccccaacacatggttcgcattttccaccctcccccccccc-ccccccccc----c-- B D Horse --ccc---cccatccctaacacatggttcgcattttccaccctcccccgcctc-tcgcgccac----c-- B D Chinese pangolin --tcc---cccacccccaacacatggttcgcattttccaccctcccccgcctc-tcgcgccgc----a-- B D Dog --ccc---cccatccccaacacatggttcgcattttccaccctcccccgcctc-tcgcgccgc----g-- B D Hawaiian monk seal --ccc---cccatccccaacacatggttcgcattttccaccctcccccgcctc-tcgcgccgc----t-- B D Hedgehog --ccc---cccatctccaacacatggttcgcattttccaccctaccccgcctctttgcgccgc----g-- B D Shrew --ccc---cccagccccaacacatggttcgcattttccatcctcccccgcctc-tcgcgccgc----c-- B D Elephant --ccc---cccagccccaacacatggttcacattttccaccctcccccgcccc-ctgcgccgcgccag-- B D Tenrec ---cc---cccagccccgacacatggttcacattttccaccctcccccgcccc-ctgcgctgc----c-- B D Opossum ctcct---tcccaaccaaactcatgattcacatgctccttttccttttctttc-tttctcctt----t-- B D Zebrafish ====================================================================== B D X. tropicalis ====================================================================== B D Chicken ====================================================================== Mouse ----------------c-------------------agcctcag-ccg--ggctagactgt-ttggagag Rat ----------------c-------------------agcctcag-ccg--ggctagactgt-ttggagag GCF_003668045 ---------------gc-------------------ggccttag-ccg--ggctattctgc-ttggagag Beaver ---------------gt-------------------aaccgcag-ccc--ggcttgctcac-ttggagag Squirrel ---------------gc-------------------agcctcag--cg--ggctggctggc-ttggtgag Guinea pig ---------------gc-------------------agtctcag-ccg--ggcttgctcac----agcag Rabbit gcgccgcgccgcgccgc-------------------agcctcag-ccg--ggcttgctcac-tcggagag Pika -----------tgctgc-------------------ctcctccgcccg--ggctggctcac-t--gagtg Human ---------------gc-------------------agcctcag-ccc--ggcttgctcac-ttggagag Chimp ---------------gc-------------------agcctcag-ccc--ggcttgctcac-ttggagag Bonobo ---------------gc-------------------agcctcag-ccc--ggcttgctcac-ttggagag Gorilla ---------------gc-------------------agcctcag-ccc--ggcttgctcac-ttggagag Rhesus ---------------gc-------------------agcctcag-ccc--ggcttgctcac-ttggagag Marmoset ---------------gc-------------------ggcctcag-ccc--ggcttgctcac-ttgaagag Tarsier ---------------gc-------------------cgcctcaa-ccg--gcctggctcgc-tcggaga- Bushbaby ---------------gc-------------------agtctcag-gcc--ggctcgcaga--gcgcagag Tree shrew ---------------gc-------------------agcctctg-ccc--ggcttgctcactttggagag Malayan flying lemur ---------------gc-------------------agcctcag-ccc--ggcttgctcac-ttggagag Pig ---------------gt-------------------agcctcag-accggcgctctctcgc-ttggagag Dolphin ---------------gc-------------------agcctcag-acc--agctcgctcac-ttggagag Cow ---------------gc-------------------agcctcgg-acc--agcctgctcac-ttggagag Sheep ---------------cc-------------------gcccc-----cc--cgccc-ccccc-ccggagag Horse ---------------gc-------------------agcctcag-acc--ggctcactcac-ttggagag Chinese pangolin ---------------gc-------------------agcctcag-acc--ggcttgctcac-ttggagag Dog ---------------gc-------------------agccttag-acc--cgctcgctcgc-ttggagag Hawaiian monk seal ---------------gc-------------------agccttag-acc--ggctcgctcac-ttggagag Hedgehog ---------------gc-------------------ggcctcag-aca--gactcgttcgc-agggagag Shrew ---------------gc-------------------ggcctcag-act--ggctcgctcgc-ttgcagag Elephant ---------------gc-------------------agcttcag-gct--ggctggctggc-ttggagag Tenrec ---------------gc-------------------ggcctccg-tca--ggcgggctacc-tcggagcg Opossum ---------------gctttagaatttatcttctagaatttcgt-cca--aatttcgaatc-ccgtgcag Zebrafish ====================================================================== X. tropicalis ====================================================================== Chicken ====================================================================== Mouse -cg-cag-cctgg--c-gatt-tgggga-gcacaagaggagg Rat -cg-cag-cctgg--a-gatt-tgggga-gcacaagagaagg GCF_003668045 -gg-cag-cccgc--c-gact-taggga-gcagtgggggagg Beaver -cg-ccg-cccgg--ctgact-tggggc-gcagcccgggagg Squirrel -cg-ctg-cccgggcc-cact-tggggc-gcagccctggagg Guinea pig -cgattg-cccgagcc-gacc-agaggc-gctgcccgggagg Rabbit -cg-cgg-ccggggccggact-tggggc-tcagcccgggagg Pika -cg-cgg-cc---gccgggct-tggggc-gcagcccgggagg Human -tg-cgg-ccggggctggact-tggggc-gcagcccgggagg Chimp -tg-cgg-ccggggctggact-tggggc-gcagcccgggagg Bonobo -tg-cgg-ccggggctggact-tggggc-gcagcccgggagg Gorilla -tg-cgg-ccggggctggact-tggggc-gcagcccgggagg Rhesus -ca-cgg-ctggggctggact-tggggc-gcagcccgggagg Marmoset -ag-cgt-cc-gggccggact-tggggg-gcagcccgggagg Tarsier -cg-cgt-tcggggccggact-tggggt-gcagcccgggagg Bushbaby -cg-cgg-cc--ggccggact-tgggga-gcagcccaggagg Tree shrew -cg-cag-ccggggccggact-tggggc-gcagcccggaagg Malayan flying lemur -cg-cgg-ccggggccggact-tggggc-agagcccgggagg Pig -cg-aga-cc---gctggact-tggggc-gcagcccgggagg Dolphin -cg-ccg-ccggggccggact-tggggc-gcagccggagagg Cow -cg-cgg-ccggggccggact-tgggga-gcagcccgagagg Sheep -cg-ggg-ccggggccgggctctggggc-gcagcctgagagg Horse ccg-cgg-ccggggccggact-tggggc-gcagcccgggagg Chinese pangolin -cg-cgg-ccccggccggact-tgggga-gcagcccgggagg Dog -cg-cgg-cccgggtcggact-tggggc-gcagcccgggagg Hawaiian monk seal -cg-cgg-cccgggtcggact-tggggc-gcagcccgggagg Hedgehog -ca-cggcccggggccggact-tgggggcgcagcccgggagg Shrew -cg-cgg-ccaggacccgact-tgggga-gcagcccagcagg Elephant -cg-cgg-cccgggctggact-tgggac-ccagccggggagg Tenrec -cg-cgg-ccggggccggtc--gggggc-gcagcccgggagg Opossum -ca-taa-ct----ttagatt-taaata-gcaggggagaagg Zebrafish ========================================== X. tropicalis ========================================== Chicken ========================================== Inserts between block 25 and 26 in window B D Opossum 13bp Alignment block 26 of 287 in window, 56744345 - 56744391, 47 bps B D Mouse ccctagcaggct--tggggctgcgg-gttgtaggtagccactgtcggc-----ag B D Rat ccctagcaggct--tggggctgcgg-gctgtagatggccactgtccgc-----ag GCF_003668045 ccttagcgggct--tgggtctgcga-gctgcagat-gccactgccggt-----aa Beaver cccgagccggct--tggggctgccg-gctgcagat-gccgctgtccgc-----ga B D Squirrel cccgagccgact--taaggttgccg-gcggcagat-gcggctacaggc-----aa B D Guinea pig gcccagtcggct--tggggcagtcg-gcagcagat-gcctctg-gagc-----ag B D Rabbit cccgagccggcg--tggggctaccg-gctgcaaac-gccgctgcgggc-----ag B D Pika -ccgaaccggcc--tggggttgccgagct-----t-gccgggctggac-----ag B D Human cccgagcctgct--tggggctgccg-gctgcagac-tccgctgtgggcagagcag B D Chimp cccgagcctgct--tggggctgccg-gctgcagac-tccgctgtgggcagagcag B D Bonobo cccgagcctgct--tggggctgccg-gctgcagac-tccgctgtgggcagagcag B D Gorilla cccgagcctgct--tggggctgccg-gctgcagac-tccgctgtgggcaaagcag B D Rhesus cccgagcctgct--tggggctgccg-gctgcagac-gccgctgcgggcagagcag B D Marmoset cctgagcctgct--tggggctgccg-gctgcagat-gccgctgcaggcagagtag B D Tarsier cccgagcctgtt--tggggcggccg-gctgcagac-gccgctgcgggc-----gg B D Bushbaby cccgagcctgcg--tggggctgcgg-gcggcaggc-gccgctgcgggc-----ag B D Tree shrew cccgagccggct--tggggctgcgg-gttgcagag-gccgctgccggc-----ag B D Malayan flying lemur cccgagccggca--tggggctgccg-gctgcagac-gccgctgcgggc-----ag B D Pig cccgagccgtcg--tggggctgccg-gctgcagac-actgctttgggc-----ag B D Dolphin cccgagcaggcg--tggggctgccg-gctgcagac-actgctgcgggc-----ag B D Cow cccgagcgggcg--tggagctgccg-gctgcagac-acggcttcgggc-----gg B D Sheep cccgagcgggcg--tggagctgccg-gctgcagac-acggcttcgggc-----gg B D Horse cccgagccggcg--tggggctgccg-gctgcagac-accgctgcgggc-----gg B D Chinese pangolin cccaggcaggcg--tggggctgccg-gctgcagac-actgctgcgagc-----aa B D Dog cctgagccggcg--tggggctgctg-gctgcagac-accgctgcgggc-----gg B D Hawaiian monk seal cctgagcgggcg--tggggctgctg-gctgcagac-accgctgcggac-----ag B D Hedgehog cccgagcgggtg--tggggctgcgg-gctgccgac-gccgctgcgggg-----ag B D Shrew cccgagccggcg--aggggctgccg-gcggcagac-gccgctgcggac-----ag B D Elephant ccggagccggct--tggggccgccg-gctgcagac-gccgctgcaggc-----ac B D Tenrec ccgaggccggcttgtggggctgcag-gcagcaggc-gacgctgcaggt-----tg B D Zebrafish ======================================================= B D X. tropicalis ======================================================= B D Opossum ======================================================= B D Chicken ======================================================= Alignment block 27 of 287 in window, 56744392 - 56744453, 62 bps B D Mouse cttgct-----------c-ac--------------ga-------------------gtc----------- B D Rat cttgct-----------c-ac--------------ga-------------------atc----------- GCF_003668045 cttgct-----------t-ac--------------cg-------------------atc----------- Beaver tttgct-----------t-gg--------------gg-------------------atc----------- B D Squirrel cttgtt-----------tggg--------------gg-------------------att----------- B D Guinea pig cttgct-----------t-gc--------------g--------------------atc----------- B D Rabbit cttgct-----------c-cg--------------gg-------------------atc----------- B D Pika tttgtt-----------tggg--------------gg-------------------atc----------- B D Human cttgct-----------t-gg--------------gg-------------------atcactacggccgg B D Chimp cttgct-----------t-gg--------------gg-------------------atcactacggccgg B D Bonobo cttgct-----------t-gg--------------gg-------------------atcactatggccgg B D Gorilla cttgct-----------t-gg--------------gg-------------------atcactacggccgg B D Rhesus cttgct-----------t-gg--------------gg-------------------atcactacggccgg B D Marmoset cttgct-----------t-gg--------------gg-------------------atcac--------- B D Tarsier cttgat-----------c-cg--------------gg-------------------atc----------- B D Bushbaby cgtgct-----------t-gg--------------gg-------------------atc----------- B D Tree shrew cttgct-----------t-gg--------------gg-------------------atc----------- B D Malayan flying lemur cttgct-----------t-tg--------------gg-------------------atc----------- B D Pig cttgtt-----------t-gg--------------gg-------------------atc----------- B D Dolphin cttgtt-----------t-gg--------------gg-------------------atc----------- B D Cow cttgtt-----------t-gg------------------------------------------------- B D Sheep cttgtt-----------t-gg------------------------------------------------- B D Horse cttgtt-----------c-gg--------------gg-------------------atc----------- B D Chinese pangolin ctagtt-----------t-gg--------------gc-------------------atc----------- B D Dog cttgtt-----------t-gg--------------gg-------------------atc----------- B D Hawaiian monk seal tttgtt-----------t-gg--------------gg-------------------atc----------- B D Hedgehog cttgtt-----------t-gg--------------ggcggggggggggagggcataatc----------- B D Shrew cttgtt-----------t-gg--------------gg-------------------atc----------- B D Elephant ctcgct-----------c-gt--------------gg-------------------agc----------- B D Tenrec cccgct-----------c-ggtggtgggtgggtgagg-------------------gtc----------- B D Opossum cttactcttcaccaagat-aa--------------gt-------------------atagtctcgactcc B D Zebrafish ====================================================================== B D X. tropicalis ====================================================================== B D Chicken ====================================================================== Mouse -aga--t--gc----cgcagctacgagt--ccccgcacactctggaaattgtat---tatta Rat -aga--t--gc----agcagctacgagt---cccgcacactctggaaattgtat---tatta GCF_003668045 -aga--t--gc----agcagctacgcgt---cccgcacgctgtggaaattgtat---tatta Beaver -aga--t--gc----ggcagttggaagt---cccgcacgatgtggaaattgtag---tattc Squirrel -aga--t--gt----gactgctagcagt---ctcctacgttgtggaaattgtaa---tattc Guinea pig -aga--t--gc----agcagctaagagt---cccatatgatgtggaaattgtag---ta--- Rabbit -aga--g--gc----gg-tgcgaggagg---ccggtgcgcggtggaaattgtag---tattc Pika -cca--g--gc----ggctgcgaggaggagatcggtgagcagtggaaattgtag---tg--- Human gagaagt--ct----ggccgggaggagt---ccagcacgccttggaaattgaag---tatt- Chimp gagaagt--ct----ggccgggaggagt---ccagtacgccttggaaattgaag---tatt- Bonobo gagaagt--ct----ggccgggaggagt---ccagcacgccttggaaattgaag---tatt- Gorilla gagaagt--ct----ggccgggaggagt---ccagcaggccttggaaattgaag---tatt- Rhesus gagc---------------------agt---ccagcacgcggtggaaattgaag---tattc Marmoset -aga------c----gcccgggaggagt---ccagcacgcggtggaaattgaag---tatt- Tarsier -aga--t--gc----ggccgcgaggagc---tcggcgcgctgtggaaattgtag---tattc Bushbaby -aga--t--ga----ggccgcgacgagt---ac-gcgcgcagtggaaattgtag---tattc Tree shrew -aga--t--gc----cgctgcgaggagt---ctagcacgctgtggaaattgtaggattcttc Malayan flying lemur -aga--t--gc----ggtctcgaggagt---ccggcacgctggggaaaatgtag---tgttc Pig -tga--tgggc----ttcgaggagaagt---cgggcaccctgtggaaattgcag---tattc Dolphin -aga--t--gc----ggccgcgaggagt---cgggcacgctgtggaaactgcag---tgttc Cow -----------------------ggagt---cggggactctgtagaaattgcag---tattc Sheep -----------------------ggagt---cggggactctgtagaaattgcag---tattc Horse -aga--t--gc----ggccgcgaggagt---cgggcaccctgtggaaattgcag---tattc Chinese pangolin -aga--t--gc----ggccgtgaggagt---cgggcaccctatggaaattgcag---tattc Dog -aga--t--gc----ggccgcgaggagt---cgggcaccctgtggaaattgcag---tattc Hawaiian monk seal -aga--t--gc----ggccgcgaggagt---tgggcaccctgtggaaattgcag---tattc Hedgehog -tgt--t--gt----ggccgcgagaagt---cgggcgccctgtggaaatggcag---tgttc Shrew -act--t--gc----ggccccgaggagt---agggcacccagtagaaattgcag---tattc Elephant -aga--t--tc----ggccgcgaggagt---ccggcgcacgggggaaattgcag---agttt Tenrec -aga--t--gcggctggccgggaagagc---ccggcactagggggaaatggcag---agttc Opossum caga--t--gc----agactcacatagc--aagagcttttcattgaaattgcag---ggttc Zebrafish ============================================================== X. tropicalis ============================================================== Chicken ============================================================== Alignment block 28 of 287 in window, 56744454 - 56744454, 1 bps B D Mouse t B D Rat t GCF_003668045 t Beaver t B D Squirrel t B D Guinea pig t B D Rabbit t B D Pika t B D Rhesus t B D Tarsier t B D Bushbaby t B D Tree shrew t B D Malayan flying lemur g B D Pig t B D Dolphin t B D Cow t B D Sheep t B D Chinese pangolin t B D Elephant t B D Tenrec t B D Opossum c B D X. tropicalis t B D Hawaiian monk seal - B D Dog - B D Horse - B D Marmoset - B D Gorilla - B D Bonobo - B D Chimp - B D Human - B D Hedgehog - B D Zebrafish = B D Chicken = B D Shrew - Inserts between block 28 and 29 in window B D Elephant 3bp B D Tenrec 3bp B D Opossum 3bp Alignment block 29 of 287 in window, 56744455 - 56744531, 77 bps B D Mouse tctc---ggattc-------tggcaatcagggcaaatttgctcaggcaggaagttcaaatgtcacctaat B D Rat tctc---ggattc-------tggcaatcaggccaaatttgctcaggcaggaagttcaaatgtcacctaat GCF_003668045 tctc---ggattc-------tggcaatcaggccaaatttgctcaggcaggaagttcaaatgtcacctaat Beaver tctc---ggattc-------tggcaatcaggccaaatttgctcaggcaggaagttcaaatgtcacctaat B D Squirrel tctt---ggattc-------aggcaatcaggccaaattcgctcaggcaggaagttcaaatgtcacctaat B D Guinea pig tctc---ggattc-------tggcaatcaggctaaatttgctcaggcaggaagttcaaatgtcacctaat B D Rabbit tctc---ggatac-------tggcaatcagaccaaatttgctcaggcaggaagttcaaatgtcacctaat B D Pika tctc---agattc-------tggcaatcagaccacatttgctcaggcaggaagttcaaatgtcacctaat B D Human -ctc---cgattc-------tggtaatcaggccaaatttgctcaggcaggaagttcaaatgtcacctaat B D Chimp -------cgattc-------tggtaatcaggccaaatttgctcaggcaggaagttcaaatgtcacctaat B D Bonobo -------cgattc-------tggtaatcaggccaaatttgctcaggcaggaagttcaaatgtcacctaat B D Gorilla -ctc---cgattc-------tggtaatcaggccaaatttgctcaggcaggaagttcaaatgtcacctaat B D Rhesus tctc---cgattctggattgtggtaatcaggccaaatttgctcaggcaggaagttcaaatgtcacctaat B D Marmoset -ctc---ccattt-------tggcaatcaggccaaatttgctccggcaggaagttcaaatgtcaactaat B D Tarsier tctc---ggattc-------tggcaatcaggccaaatttgctcaggcaggaagttcaaatgtcacctaat B D Bushbaby tctt---ggattt-------tggcaatcaggccaaatttgctcaggcaggaagttcaaatgtcacctaat B D Tree shrew tctc---ggattc-------tggcaatcaggctaaatttgctcaggcaggaagttcaaatgtcacctaat B D Malayan flying lemur tctc---ggattc-------tggcaatcaggccaaatttgctcaggcaggaagttcaaatgtcacctaat B D Pig tctt---ggattc-------tggtaatcagaccaaatttgctcaggcaggaagttcaaatgtcacctaat B D Dolphin tctt---gcattc-------tggcaatcagaccaaatttgctcaggcaggaagttcaaatgtcacctaat B D Cow tctt---gcattc-------tggcaatcagaccaaatttgctcaggcaggaagttcaaatgtcacctaat B D Sheep tctt---gcattc-------tggcaatcagaccaaatttgctcaggcaggaagttcaaatgtcacctaat B D Horse --tt---ggattc-------tggcaatcaggccaaatttgctcaggcaggaagttcaaatgtcacctaat B D Chinese pangolin tttt---ggattc-------tggcaatcaggtcaaatttgctcaggcaggaagttcaaatgtcacctaat B D Dog --tt---ggattc-------tggcaatcaggccaaatttgctcaggcaggaagttcaaatgtcacctaat B D Hawaiian monk seal --tt---ggattc-------tggcaatcaggccaaatttgctcaggcaggaagttcaaatgtcacctaat B D Hedgehog --tt---ggattc-------tggcaatcaggctaaatttgctcaggcaggaagttcaaatgtcacctaat B D Shrew --ttcgaggattc-------tggcaatcaggccaaatttgctcaggcaggaagttcaaatgtcacctaat B D Elephant tctc---gggttc-------tggcaatcaggccaaatttgctcaggcaggaagttcaaatgtcacctaat B D Tenrec tctc---gggttc-------tggcaatcaggccaaatttgctcaggcaggaagttcaaatgtcacctaat B D Opossum tctc---ggattc-------tcgcaatcaggccaaatttgctcagacaggaagttcaaatgtcacctaat B D Chicken tctc---cgcttt-------tcgcaatcaggccaaatgcgctcaggcaggaagttcaaatgtcacctaat B D X. tropicalis tctc---tgcctt-------gtgcaatcagactaaattcacccagacaggaagttcaaatgtcagataat B D Zebrafish ====================================================================== Mouse tggtttcattcttatgc Rat tggtttcattcttatgc GCF_003668045 tggtttcgttcttatgc Beaver tggtttcattcttatgc Squirrel tggtttcattcttatgc Guinea pig tggtttcattcttatgc Rabbit tggtttcgttcttatgc Pika tggtttcgttcttatgc Human tggtttcgttcttatgc Chimp tggtttcgttcttatgc Bonobo tggtttcgttcttatgc Gorilla tggtttcgttcttatgc Rhesus tggtttcgttcttatgc Marmoset tggtttcgttcttatgc Tarsier tggtttcattcttatgc Bushbaby tggtttcattcttatgc Tree shrew tggtttcattcttatgc Malayan flying lemur tggtttcattcttatgc Pig tggtttcattcttatgc Dolphin tggtttcattcttatgc Cow tggtttcattcttatgc Sheep tggtttcattcttatgc Horse tggtttcattcttatgc Chinese pangolin tggtttcattcttatgc Dog tggtttcattcttatgc Hawaiian monk seal tggtttcattcttatgc Hedgehog tggtttcattcttatgc Shrew tggtttcattcttatgc Elephant tggtttcattcttatgc Tenrec tggtttcattcttatgc Opossum tggtttcattcttatgc Chicken tgccttaattctgatgc X. tropicalis tggtttcattcttaggc Zebrafish ================= Inserts between block 29 and 30 in window B D X. tropicalis 2818bp Alignment block 30 of 287 in window, 56744532 - 56744608, 77 bps B D Mouse ttcacttcattttcctcggaaacggag-------------gtctc-------ggt----ctct------- B D Rat ttcacttcattttcctc-----------------------gtcgc-------gct----ctct------- GCF_003668045 ttcacttcattttcttcggaaacggaggttcgggttcctagtctc-------tct----ctct------- Beaver ttcacttcattttcctcggaaacggag-------------gtcct-------ggt----tactac-ta-- B D Squirrel ttcacttcattttcctcggaaacggag-------------gtccc-------gct----tactgc-ta-- B D Guinea pig ctcacttcattttcctcggaaacccag-------------gtcct-------ggt----tgctag-ta-- B D Rabbit ttcacttcattttcctcggaaacggag-------------gtccc-c----aagt----tactac-ta-- B D Pika ttcacttcattttcctcggaaatggag-------------gtcctga----aagt----tattgcttt-- B D Human ttcacttcattttcctcggaaatggag-------------gtccc-g----aagt----tactac-ta-- B D Chimp ttcacttcattttcctcggaaatggag-------------gtccc-g----aagt----tactac-ta-- B D Bonobo ttcacttcattttcctcggaaatggag-------------gtccc-g----aagt----tactac-ta-- B D Gorilla ttcacttcattttcctcggaaatggag-------------gtcct-g----aagt----tactac-ta-- B D Rhesus ttcacttcattttcctcggaaatagag-------------gtccc-g----aagt----tactac-ta-- B D Marmoset ttcacttcattttcctcggaaatggag-------------gtccc-g----aagt----tactac-ta-- B D Tarsier ttcacttcattttcctcggaaaccgag-------------gtccc-c----aagt----tactac-caa- B D Bushbaby ttcagttcattttcctcggaaaccgag-------------gtccc-g----aagt----tactac-ta-- B D Tree shrew ttcacttcattttcctcggaaatggag-------------gtctc-a----aagt----tactac-ta-- B D Malayan flying lemur ttcacttctttttcctcggaaacagag-------------gtccc-g----aagt----cactac-ta-- B D Pig ttcacttcattttcctcggaaacggag-------------gtccc-a----aagt----tactac-ta-- B D Dolphin ttcacttcattttcctcggaaacggag-------------gtcct-g----aagt----tactac-ta-- B D Cow ttcacttcattttcctcggaaacggag-------------gtccc-g----aagt----tactac-ta-- B D Sheep ttcacttcattttcctcggaaacggag-------------gtccc-g----aagt----tactat-ta-- B D Horse ttcacttcattttcctcggaaaccgag-------------gtccc-g----aagt----tactac-ta-- B D Chinese pangolin ttcacttcattttcctcggaaacggag-------------gtccc-g----aagt----tactac-ta-- B D Dog ttcacttcattttcctcggaaacggag-------------gtccc-c----aagt----tactac-ta-- B D Hawaiian monk seal ttcacttcattttcctcggaaacggag-------------gtccc-g----aagt----tactac-ta-- B D Hedgehog ttcacttcattttc-------------------------------------------------------- B D Shrew ttcgcttcattttcctcggaaacagag-------------gtccc-g----acgt----tactac-ta-- B D Elephant ttcacttcattttcctcggaaacggag-------------gtcca-g----aagt----tactac-ta-- B D Tenrec ttcacttcattttcctcggaaatggaa-------------gtccc-g----aagt----tactac-ta-- B D Opossum ttcacttttt--------gaaacagcgagt----------gagcc-a----aaatagaaaaccat-cg-- B D Chicken tgta-----ttttccttcgaagcggtg-------------gtccg-ggaaaacga----aacccc-gaag B D Zebrafish ====================================================================== B D X. tropicalis ====================================================================== Mouse -----ctctctctct--------------------c------tc-tctctctc----------------- Rat -----ctctctctct--------------------c------tc-tctctctc----------------- GCF_003668045 -----ctctctctct--------------------c------tc-tctctctc----------------- Beaver gt--aacttgtatat--------------------a------gc-tcattccg----------------- Squirrel gt-aactttgtaact--------------------t------gcatttagctg----------------- Guinea pig ac-atgcttgta-at--------------------c------tc-tctccccg----------------- Rabbit gt-a-acttgcatga--------------------a------gc-tcaatccg----------------- Pika gt-a-acttacatgt--------------------a------gc-tcgttctg----------------- Human gt-a-acttgcatgt--------------------a------ac-tcattcccaga-------------- Chimp gt-a-acttgcgtgt--------------------a------ac-tcattcccaga-------------- Bonobo gt-a-acttgcgtgt--------------------a------ac-tcattcccaga-------------- Gorilla gt-a-acttgcatgt--------------------a------ac-tcattcccaga-------------- Rhesus gt-a-acttgcatgt--------------------a------ac-tcattcccaga-------------- Marmoset -------------ct--------------------a------ac-tcattcccaga-------------- Tarsier gt-a-acttgcatgt--------------------a------ac-tcattcccgga-------------- Bushbaby gt-a-actt---tct--------------------c------tc-tctttctc----------------- Tree shrew gt-a-acttacatgt--------------------a------gc-tca---------------------- Malayan flying lemur gc-a-tctt---tgt--------------------a------gc-tcattccaggattctctctctctct Pig gt-a-actta-aggt----tactg-----------c---atcgc-tcattctggga-------------- Dolphin gt-a-acttgcgtgt----tacag-----------c---attgc-tcattctggga-------------- Cow gt-a-acttgcatgttagatagag-----------c---attgc-tcattctggga-------------- Sheep gt-a-acttgcatgt----tagag-----------c---attgc-tcattctggga-------------- Horse gt-a-acctgcatgt----tactg-----------c---attgc-tcattctggga-------------- Chinese pangolin gt-a-acttgcatgt----tactgggactaattccc---gttgc-tcattctggga-------------- Dog gt-a-acttgcatgt----tgctg-----------c---attgc-tcattctggga-------------- Hawaiian monk seal gt-a-acttgcatgt----tactg-----------c---attgc-tctttctggga-------------- Hedgehog ------tgtgcatgt----gactg-----------c---attgc-ttattctcaca-------------- Shrew gt-a-acttgtatgt----tactg-----------cgcagttgc-tcattctagga-------------- Elephant gt-a-acttgcatgt--------------------a------gc-tcattccggga-------------- Tenrec gt-a-acttgcatgt--------------------a------gc-tcattccggga-------------- Opossum gtta-ttttgcctgg--------------------t------tc-tccttccagga-------------- Chicken gt-t-tgctccctgt--------------------a------aa-ccttccac----------------- Zebrafish ====================================================================== X. tropicalis ====================================================================== Mouse -----------------------------------------tctctctc---------tctctc-----t Rat -----------------------------------------tctctctc---------tctctc-----t GCF_003668045 -----------------------------------------tctctctc---------tctctc-----t Beaver -----------------------------------------tctctctc---------tctctc-----t Squirrel -----------------------------------------attccggg---------ttcccc-----t Guinea pig -----------------------------------------cctctgtc---------tttctc-----t Rabbit -----------------------------------------gctcgcgc---------tctctc-----t Pika -----------------------------------------gcgcgctc---------tctctc-----t Human --------------------------cgaagtcatattcacattctctc---------tctctc-----t Chimp --------------------------cgaagtcatattcacattctctc---------tctctc-----t Bonobo --------------------------cgaagtcatattcacattctctc---------tctctc-----t Gorilla --------------------------cgaagtcatattcacattctctc---------tctctc-----t Rhesus --------------------------tgaagtcatattcacattctctc---------tctctc-----t Marmoset --------------------------cgaggtcatattctctctctctc---------tctctc-----c Tarsier --------------------------agaattcat----------tctc---------tctctc------ Bushbaby ------------------------------------tccctctctcctc---------tctttc-----t Tree shrew ----------------------------------------------ttcagagaggaattttgt-----g Malayan flying lemur ctctctctctctctctctctctctctctctctctctctctctctctctc---------tctctc-----t Pig --------------------------ctaa-----------ttttctgc---------tttatt-----t Dolphin --------------------------ctaa-----------ttttctgc---------tttatt-----t Cow --------------------------cgaa-----------ttttctgc---------tttatt-----t Sheep --------------------------ctaa-----------ttttctgc---------tttatt-----t Horse --------------------------ctaa-----------ttttctgc---------tttatt-----t Chinese pangolin --------------------------ctaa-----------ttttctgc---------tttatt-----t Dog --------------------------ctca-----------ttttctgc---------tttatt-----t Hawaiian monk seal --------------------------ctaa-----------ttttctgc---------tttatt-----t Hedgehog --------------------------ctga-----------ttttcttt---------at--tt-----c Shrew --------------------------ctag-----------ttttcttc---------tttatt-----t Elephant --------------------------ctaa-----------ttttctgc---------tttattac--tt Tenrec --------------------------ctaa-----------ttttctgc---------tgtattac--tt Opossum -------------------------actaa-----------ttttctgc---------tttattaccgtt Chicken -----------------------------------------cttctttc---------tgtttc-----t Zebrafish ====================================================================== X. tropicalis ====================================================================== Mouse ct---- Rat ct---- GCF_003668045 ct---- Beaver ct---- Squirrel tt---- Guinea pig tc---- Rabbit cc---- Pika ct---- Human ct---- Chimp ct---- Bonobo ct---- Gorilla ct---- Rhesus ct---- Marmoset ct---- Tarsier ct---- Bushbaby ct---- Tree shrew ct---- Malayan flying lemur ct---- Pig ct---- Dolphin ct---- Cow ct---- Sheep ct---- Horse ct---- Chinese pangolin ct---- Dog ct---- Hawaiian monk seal ct---- Hedgehog ct---- Shrew ct---- Elephant ct---- Tenrec ct---- Opossum ct---- Chicken ccgcct Zebrafish ====== X. tropicalis ====== Inserts between block 30 and 31 in window B D Chicken 732bp Alignment block 31 of 287 in window, 56744609 - 56744624, 16 bps B D Mouse ctctctccc----------------------------------cttacct B D Rat ctccccccccctctct---------------------------ctccccc GCF_003668045 ctctctctctctctctctctct--ctctctctctc--------ctccctc Beaver ctgcccccc----------------------------------------- B D Squirrel ctcctcccc----------------------------------------- B D Guinea pig cttccttcccttttttctcccttccttctttcctt--------cttcctt B D Rabbit ct------------------------------------------taacgt B D Pika ctctctctctctctctctct-----------------------ctcacac B D Human ttctctctc----------------------------------cattcac B D Chimp tgctctctc----------------------------------cattcac B D Bonobo tgctctctc----------------------------------cattcac B D Gorilla ttctctctc----------------------------------cattcac B D Rhesus ctctctctctctctctctctctctctctctctctctctctcatcattcac B D Marmoset ctacctctc----------------------------------ccc---- B D Tarsier cccccccaa----------------------------------cattctg B D Bushbaby ctatctcttggtctcggcctctctttctttcg-----------tattcct B D Tree shrew ttctcgctcacagat----------------------------ca----- B D Malayan flying lemur ctctctctctctcgt----------------------------catttac B D Pig ctct--------------------------------------------cc B D Dolphin ctctttgtcctccccctcct-----------------------cccccct B D Cow ctctttctc----------------------------------ccgctct B D Sheep ctctttctc----------------------------------ccgctct B D Horse ctctctctctccctcc---------------------------cctc--- B D Chinese pangolin ctctccctctttttcc---------------------------cctccct B D Dog ctctctctctctctctctctctctctctg--------------cctctct B D Hawaiian monk seal ctctctctctctccc----------------------------cctctct B D Hedgehog ttctcctttatgtgaa---------------------------tatatat B D Shrew tcctccctgacttaaa---------------------------aaaaaat B D Elephant ctctctcttgatctag---------------------------tcgttct B D Tenrec cacgcgcttgctctatctctcgc--------------------tcgctct B D Opossum ttccgcttttct-------------------------------------- B D Zebrafish ================================================== B D X. tropicalis ================================================== B D Chicken ================================================== Inserts between block 31 and 32 in window B D Rabbit 73bp B D Pika 9bp B D Human 2bp B D Chimp 2bp B D Bonobo 2bp B D Gorilla 2bp B D Rhesus 2bp B D Tarsier 2bp B D Bushbaby 2bp B D Tree shrew 2bp B D Malayan flying lemur 2bp B D Pig 22bp B D Dolphin 23bp B D Cow 23bp B D Sheep 23bp B D Horse 4bp B D Chinese pangolin 7bp B D Dog 27bp B D Hawaiian monk seal 27bp B D Hedgehog 19bp B D Shrew 15bp B D Elephant 6bp B D Tenrec 6bp Alignment block 32 of 287 in window, 56744625 - 56744628, 4 bps B D Mouse c--cca B D Rat c--cta GCF_003668045 c--ctc B D Guinea pig cttctt B D Pig t----- B D Dolphin t----- B D Cow t----- B D Sheep t----- B D Horse t----- B D Chinese pangolin c----- B D Dog c----- B D Hawaiian monk seal c----- B D Hedgehog g----- B D Shrew g----- B D Opossum --ttca B D Rhesus ====== B D Marmoset ------ B D Gorilla ====== B D Bonobo ====== B D Chimp ====== B D Human ====== B D Tenrec ====== B D Tarsier ====== B D Tree shrew ====== B D Pika ====== B D Zebrafish ====== B D X. tropicalis ====== B D Chicken ====== B D Elephant ====== B D Squirrel ------ B D Rabbit ====== B D Bushbaby ====== Beaver ------ B D Malayan flying lemur ====== Inserts between block 32 and 33 in window B D Opossum 172bp Alignment block 33 of 287 in window, 56744629 - 56744677, 49 bps B D Mouse cccacct---------------------ccctt---aac--agacgtta--att---------------- B D Rat accactt---------------------tcctt---aac--agacgtta--att---------------- GCF_003668045 ccctcctcacacctcccccttgc-----ccctt---aac--agacgtta--att---------------- Beaver -ccacct---------------------cccat---tac--------------t---------------- B D Squirrel -ccacctcactttt--------------acctt---aacagagacatca--a-t---------------- B D Guinea pig tcctcctgctgtgtcca-----------ctctg---aag--agacat------c---------------- B D Pika -----------------cacaca-----cacac---aac--ctaccata--t-t---------------- B D Human --------------------tct-----aactt---aac--agacttca--c-t-gtatata-------- B D Chimp --------------------tct-----aactt---aac--agacttca--c-t-gtatata-------- B D Bonobo --------------------tct-----aactt---aac--agacttca--c-t-gtatata-------- B D Gorilla --------------------tct-----aactt---aac--agacttca--c-t-gtatata-------- B D Rhesus --------------------tct-----aactt---aac--agacttca--c-t-gtatata-------- B D Marmoset ------------------------------ctt---aac--agacttca--c-c-gtgtgta-------- B D Tarsier --------------------ttt-----acatg---aac--agatttca--c-taatacata-------- B D Bushbaby --------------------cca-----aaatt---cac--acttttac--c-t-tcacaga-------- B D Tree shrew --------------------ttt-----acctt---aac--agacttca--c-t-atatcta-------- B D Malayan flying lemur --------------------ttt-----atctt---aac----acttca--c-tcatacata-------- B D Pig --------------------ttt-----acctt---aat--atatatatata-t-atacatatatatttc B D Dolphin --------------------ttt-----acctt---aac--agatttcacta-c-atatatg-------- B D Cow --------------------tct-----acctt---aac--agattttagca-c-atatata-------- B D Sheep --------------------ttt-----acctt---aac--agattttagca-c-atatata-------- B D Horse --------------------ttt-----atctt---aac--agtcttca--c-t-atatata-------- B D Chinese pangolin --------------------ttt-----accat---aac--agacttca--c-t-atacgta-------- B D Dog --------------------ttt-----acctt---agc--cgacttcagtc-t-gtgtgta-------- B D Hawaiian monk seal --------------------ttt-----atctt---aac--agacttca--c-t-atatgta-------- B D Hedgehog --------------------tac-----actta---cat--acatttctaat-a-atatgtg-------- B D Shrew --------------------tat-----atatagattat--atactatagat-t-atacaca-------- B D Elephant ----------------------------acctt---acc--agacgtca--a-t---atcta-------- B D Tenrec --------------------cctcgttgccctt---aac--cgacttcg--a-t---atata-------- B D Zebrafish ====================================================================== B D X. tropicalis ====================================================================== B D Opossum ====================================================================== B D Chicken ====================================================================== B D Rabbit ====================================================================== Mouse --------------------------atcaaccca--gtagt-----tgaggtgac Rat --------------------------atcaaccca--gtagt-----taaggtgac GCF_003668045 --------------------------atcaaccct--gcagt-----tagggtgac Beaver --------------------------accactgca--atgat-----taagacaaa Squirrel --------------------------accactgca-tatgac-----gcagacaaa Guinea pig --------------------------accatcacaaaatgac-----caagaccaa Pika --------------------------atctatcta--tcttg-----gaaagtggc Human tcttaggaagggaagtggca---tcagccactgca--gtgat-----ggagat--- Chimp tcttaggaagggaagtggca---tcagccactgca--gtgat-----ggagat--- Bonobo tcttaggaagggaagtggca---tcagccactgca--gtgat-----ggagat--- Gorilla tcttaggaagggaagtggca---tcagccactgca--gtgat-----ggagat--- Rhesus tcttaggaagggaagtggcc---tcagcaactgca--gtgat-----ggagat--- Marmoset tcttaggaggggaagtggca---t------ctgca--gtgat-----ggaaat--- Tarsier tcttggcaagagaagtggca---tcaaccacttgg--gcgag-----ggagac--- Bushbaby cttaag---ggaaagtggcc---tcaacaactgcg--gtgat-----ggaaac--- Tree shrew ccttaggaagggaagtgaca---cccaccactgtg--gtgaa-----gacaa---- Malayan flying lemur ccgtgggaagagaggtggca---ccagccatggcg--gtgat-----ggagac--- Pig tattag-----agagtggca---ctaaccatcgct--gtgat-----ggaggg--- Dolphin tcttag-----gaagtggca---ccaactactgct--gtgat-----ggagag--- Cow tcctag-----gaagtggca---ccaatcaccgct--aaaat-----gaaggg--- Sheep tcctag-----gaagtggcg---ccaaccaccgct--ataat-----gaaggg--- Horse tcttag-----gaagtggca---ccaaccaccgct--gtgat-----ggagcc--- Chinese pangolin tcttag-----gaagtggta---ctaaccacctct--ttgag-----ggagtc--- Dog tcttag-----gaagtggcaccccccccccccgca--gggat-----ggaaac--- Hawaiian monk seal tcttag-----gaagtggca---ccaaccactgct--gtgat-----gggaac--- Hedgehog t--tag-----aaagtgtca---ccagcaatcact--taagtac---tagata--- Shrew ca-tag-----atatatgta---cacatatgcacg--ttcatacacatatata--- Elephant tctcag-----gcagtggaa---ccgatcactgta--gtgat-----ggaaag--- Tenrec tcttaa-----gcagtggca---tccaaccctgcg--gtggt-----ggaaag--- Zebrafish ======================================================== X. tropicalis ======================================================== Opossum ======================================================== Chicken ======================================================== Rabbit ======================================================== Inserts between block 33 and 34 in window B D Human 1bp B D Chimp 1bp B D Bonobo 1bp B D Gorilla 1bp B D Rhesus 1bp B D Marmoset 1bp B D Tarsier 1bp B D Bushbaby 1bp B D Malayan flying lemur 1bp B D Pig 1bp B D Dolphin 1bp B D Cow 1bp B D Sheep 1bp B D Horse 1bp B D Dog 1bp B D Hawaiian monk seal 1bp B D Hedgehog 1bp B D Shrew 1bp B D Elephant 1bp Alignment block 34 of 287 in window, 56744678 - 56744713, 36 bps B D Mouse aattgc-taggtgat------t-----------cgct-gttgt--ccattcggctgc B D Rat aattgc-ttggtgat------t-----------cgct-gttgt--cctttcggctgc GCF_003668045 aattgc-ttgatgat------t-----------cgct-gttgt--cctttcggctgc Beaver a--tgc-atggtgat------t-----------ccat-gttgt--cctttctactgt B D Squirrel a-------------t------t-----------atat-gccgt--cctttctactgt B D Guinea pig a--tgt-aagagggtaaagaat-----------ccaa-gtgtt--ctttttcactgt B D Rabbit aagtgc-atggcgac------t-----------ccat-gccgt--cctttccac-gt B D Pika -----a-gcggccac------t-----------ccctggccgt--cctttctactgt B D Human aaatgc-a-ggcaat------t-----------ccat-gctg---tccttttactgt B D Chimp aaatgc-a-ggcaat------t-----------ccat-gctg---tccttttactgt B D Bonobo aaatgc-a-ggcaat------t-----------ccat-gctg---tccttttactgt B D Gorilla aaatgc-g-ggcaat------t-----------ccat-gctg---tccttttactgt B D Rhesus aaatgc-a-ggcaat------t-----------ccat-gctg---tccttttacggt B D Marmoset aaatgc-a-ggcgat------t-----------ccat-gccgt--tctttttactgt B D Tarsier aaatgcaa-ggcgat------t-----------ccat-gccg---tctttctaccgc B D Bushbaby aaatgg-atggcgat------t-----------ccaa-gctgt--tttttctactgt B D Tree shrew aaatgt-agagcgat------t-----------ccat-gctgt--tcattttattgt B D Malayan flying lemur aaatgc-atggcggt------t-----------ccat-acggtcctctttctactgt B D Pig aaatgc-acagtgat------t-----------ccat-gctgt--cctcaattc--t B D Dolphin aaattc-ac-gcgat------t-----------tcat-gctgt--cctcttttctgt B D Cow aaatgc-acggcgat------t-----------ccac-gctgt--cctctcttctgt B D Sheep aaatgc-acggcgat------t-----------ccac-gctgt--cctctcttctgt B D Horse aaatgt-atggcgat------t-----------ccgt-gctgt--cctgtcttctgt B D Chinese pangolin aaatgc-atgacgat------t-----------tcat-gttgt--cctctcttcttt B D Dog aaatgc-atggtgat------t-----------tcat-cttgt--cctctcttctt- B D Hawaiian monk seal aaatgc-agggtgat------t-----------tcat-cacgt--cctctcttctt- B D Hedgehog aaatgc-aggggact------t-----------ccac-gctgc--cctcttaaccgg B D Shrew gtattc-atacatct------tagtgttatcaaccac-actat--actaatgtcttt B D Elephant aaatgc-ctgacgat------t-----------ccac-gcctt--cctttcttccgt B D Tenrec ------------------------------------t-ggctt--cctttcctctg- B D Zebrafish ========================================================= B D X. tropicalis ========================================================= B D Opossum ========================================================= B D Chicken ========================================================= Alignment block 35 of 287 in window, 56744714 - 56744883, 170 bps B D Mouse --tgt----c--tc-------tggt-tcccccc-agcctcc-tgctttcctta--------gggt--cct B D Rat --tgt----c--tc-------tgtc-tcccccc---ccccc-ccccaccctcc--------ggcttccct GCF_003668045 --ccc----ccgcc-------cgcc-cccctcccaggctcc-cgctttcctta--------gcgt--cct Beaver --tct----t--tt-------ggct-tctctgc------------tttttctg--------gggt--cct B D Squirrel --ttt----c--cc-------cgga-gcctgcc---------cctttctttta--------gggt--ccc B D Guinea pig --tct----c--ac-------ctgc-ttttcctaagccttcagctttccttta--------gggt--cct B D Rabbit --tct----t--tc-------cag-------------ttct----------------------at--cgg B D Pika --tct----c--cc-------cagc-ctgctttttgcctca----------------------gt--ccg B D Human --tct----t--tt-------cagt-tttccctgagcctgccactttcctttggggtccccgggt--ccc B D Chimp --tct----t--tt-------cagt-tttccctgagcctgccactttcctttggggtccccgggt--ccc B D Bonobo --tct----t--tt-------cagt-tttccctgagcctgccactttcctttg--------gggt--ccc B D Gorilla --tct----t--tt-------cagt-t-------agcctgccactttcctttggggtccccgggt--ccc B D Rhesus --tct----t--tt-------cagt-tttccctgagcctgccactttcctttg--------gggt--ccc B D Marmoset --tct----t--tt-------ccgt-ttaccctgagctttccgctttcctttg--------gggt--tct B D Tarsier --ttt----t--tc-------ccgt-gttccctgagcttgccgctttcctttg--------gggc--ccc B D Bushbaby --tct----t--tc-------ctgt-tttccctgagcctgcggttttcctttg----------------- B D Tree shrew --tct----t--tt-------ccgtgtttctctgagcctcctactttccttta--------gagt--ctc B D Malayan flying lemur --tct----t--tc-------ccgt-tttccttgcgcctgccgctttcctttt--------gggg--ccc B D Pig --cct----t--tc-------ccgt-tttacccatacctgctgcttcccttta--------gagt--ccc B D Dolphin --tct----t--tc-------ccgt-ttttcccgcgcctgccgcttcccttta--------gggt--ccc B D Cow --tct----t--tg-------ccgt-tttccccgcgcctgccgcttcccttta--------gggt--ccg B D Sheep --tct----t--tg-------ccgt-tttccccgcgcctgccgcttctcttta--------gggt--ccg B D Horse --tct----t--tc-------ccgt-ctctcccacgactgccacttccctttg--------gggt--acg B D Chinese pangolin --gcc----a--tt-------ccgc------------ctgccgcttcccttta--------gggt--ctc B D Dog ------------tc-------ccgt-tttccccaagcctgcggcttcccttta--------gggt--ccc B D Hawaiian monk seal ------------tc-------ctgg-tttccccaagcctgtggattcccttga--------gggc--ccc B D Hedgehog --accccccc--cc-------ccat-ttttccagtgtccgctggttccccgta--------gggt--ctc B D Shrew --cctgttct--tc-------ctcc-tttcccagctcctgcaacttttctttc---------tgt--ctc B D Elephant --ctt----t--cc-------ccgt-cttcccct---------------------------gccc--ctg B D Tenrec --cct----t--cc-------ccat-ttgcccct---------------------------gcgc--ccg B D Opossum tgtct----c--tccttagaactgt-ttgctctcggtttttctccttatctca--------actt--ctt B D Zebrafish ====================================================================== B D X. tropicalis ====================================================================== B D Chicken ====================================================================== Mouse cg-ggaac---------taggaaacgctagtggttgcg----tgcccctttcctg----caaagttt-cc Rat ag-agtac---------tgggaaatgctagtggtcgcc----ggcccttttcctg----caaacttt-cc GCF_003668045 cg--gtac---------tgggaaatgccagtggctacc----ggtcccctttccg----caga------- Beaver ct-ggtcc---------tggg-aacgcgagtggactcc----tacctagttcctg----cagg-ttt-tc Squirrel ct-agtcc---------ccgggaa-acaagtggacgtg----tatctagttcttg----cacg-ggt-tc Guinea pig cttggtcc---------ctggcatttcaagtgga-----------ccacctcctg----agtc------- Rabbit ag----cc---------cagggaccgcgagtgaacgcctgcttatttagcacttg----cacg-gtt-tc Pika ag--gtcc---------cagggactgccagcgaacacc----taaggaacttctg----cac--gtt-tc Human cg-ggtcc---------ccgagaatgcaagtggatatc----tatctagttcctg----catg-ttt-ta Chimp cg-ggtcc---------ccgagaatgcaagtggatata----tatctagttcctg----catg-ttt-ta Bonobo ca-ggtcc---------ccgagaatgcaagtggatata----tatctagttcctg----catg-ttt-ta Gorilla cg-ggtcc---------ccgagaatgcaagtggatatc----tatctagttcctg----catg-ttt-ta Rhesus cg-ggtcc---------ccgagaatgcaagtggatatc----tatctagttcctg----catg-ctt-tc Marmoset cg-ggtcc---------ccaagaatgcaagtggatatc----tatctagtttctg----caca-ttt-tc Tarsier ca-agtcc---------ccgatgatgcgagtggacgtc----tatctagttcctg----cacg-ttt-tt Bushbaby -g-ggtcc---------ccgagaatacgagtggacatc----tgtctagttcct---------------- Tree shrew ct-gacccggggagtgtccgggaatgcgagtggacgtc----tatctaggtcgtg----catg-ttt-tt Malayan flying lemur ct-gcccc---------ccgggaatgcaagtggacatc----tctctagttcccg----cacg-ttt-tc Pig cc-aggcc---------ccagaaacatgagtgga--------catctagtctctg----aacg-ttt-tc Dolphin cc-agtcc---------ccgggaatgtgagtgga--------catctagtccctg----aacg-ttt-tc Cow ac-agtcc---------cagggaattctagtgga--------catcccgtccctg----cacg-ttt-tc Sheep cc-agtcc---------cagggaatgctagtgga--------catcccgtccctg----cacg-ttt-tc Horse cg-ggtcc---------cagggaaggcaagtgga--------agtctagtcccgg----catg-ttt-tc Chinese pangolin cc-tgtcc---------ccgggaatgcgagtaga--------catctagtcattg----caca-ttt-tc Dog cc--gtcc---------ttgggaatgcatgcaga--------catctagtacctg----caca-ttt-tc Hawaiian monk seal cc-agtcc---------ctggggatgcaagtgga--------catctagtacctg------ca-ttt-tc Hedgehog ct-ggtct---------ccagcaacttgagtgga--------cattaacccctgt-------a-tgt-ta Shrew c--actct---------ctgggaa--tgcaggga--------cattgagtccctt----caag-ttt-tc Elephant cc-ggtcc---------tctggaatgcgagcggacat-----ttcgttgtccctg----aacg-ttt-tc Tenrec cc-agtcc---------gctggaatgcgagcggacag-----caagtagttcctg----aacg-tttgtt Opossum cc-acacc---------tagactaccagagtcaa--------agctgtgtttttgatttcgcg-ctt-tt Zebrafish ====================================================================== X. tropicalis ====================================================================== Chicken ====================================================================== Mouse -agcag-tgttt-ttt-------------------tccttttctgtgccggaacct-----tgctctgtc Rat -agcag-tgttc-ccc-------cc--------cacccctttctctgctggaacct-----tattctgtc GCF_003668045 --------------------------------------ttttttcagcctgaa-tt-----tgcgctgtt Beaver -agcgg-tgcca-ctc-------cactgttg--ctttcctttctcacccctgacct-----tgccgtgtc Squirrel -agcga-tgcca-ccc-------cactgttc--ctttcctttctcacccctgacct-----tgccgagtc Guinea pig ---------------------------------cttttctttcttacccctgactt-----tgctgtgtc Rabbit -actgg-tgccg-----------------------cccctc----------------------------- Pika -agcgt-tgcca-------------------------gctt----------------------------- Human -agcag-tgcca-ccc-------cactgttt--ctttcctttctcacccctgacct-----tgcctagtc Chimp -agcag-tgcca-ccc-------cactgttt--ctttcctttctcacccctgacct-----tgcctagtc Bonobo -agcag-tgcca-ccc-------cactgttt--ctttcctttctcacccctgacct-----tgcctagtc Gorilla -agcag-tgcca-ccc-------cactgttt--ctttcctttctcacccctgacct-----tgcctagtc Rhesus -agcag-tgcca-ccc-------cactgttc--ctttcctttctcacccctgacct-----tgcctagtc Marmoset -agcag-tgcca-ccc-------cactgtt---ctttcctttctcacccctgacct-----tgcctagtc Tarsier -agcgg-ggcca-ccccacacctcaccgttc--ctttcctttctcacccctgacct-----tgccttgtc Bushbaby ---------------c-------cactgttc--ctttcctttctcacccctgacct-----tgccttgtc Tree shrew gagcag-tgcca-ccc-------cactgttc--ctttcctttctcacccctgacct-----tgccgtgtt Malayan flying lemur -agcgg-tgcca-ccc-------cattgttt--cttttctttctcacccctgacct-----tgccctgtc Pig -agcag-tgaca-ccc-------cactgttc--ctttcctttctcacccttgacct-----tgcagtgtc Dolphin -agtgg-tg---------------------c--ctttcctttctcacccttgacct-----tgc-gtgtg Cow -agtgg-tgcca-ccc-------caccgttc--ctttcctttctcacccttgacct-----tgc-gtgtt Sheep -agtgg-tgcca-ccc-------cactgttc--ctttcctttctcacccttgacct-----tgc-gtgtt Horse -agggg-tgcca-ccc-------cgctgttc--ctttcctttctcatccttgacct-----tgcggtgtc Chinese pangolin -agtgg-tgtca-ccc-------cattgttc--ctttcctttctcacccttgacct-----tgctgtgtc Dog -agcgg-tgcca-ccc-------cactcttc--ctttcctttctcacccttgacct-----tgcggtgtc Hawaiian monk seal -ggcgg-tgccacccc-------cactgttc--ctttcctttctcacccttgacct-----tgctgggta Hedgehog -accgg--ccca-ccc-------catagttc--ctttccatcctcacccttgacct-----tgtggtgtg Shrew -actgggtgcca-ccc-------cacggtct--ttttc--ttttcacccttgacct-----tgcagggtt Elephant -ggcga-tgcca-ccc-------cactgttc--ctttccattttcacctctgacct-----tgccgggtc Tenrec -ggcga-tgcca-ccc-------cactgttc--gttcccatgctcacctctgacct-----cgccgggtc Opossum -agcag---cta-aag-------aatggttcatctttcccttcctccttctaacttccagccgcaggccc Zebrafish ====================================================================== X. tropicalis ====================================================================== Chicken ====================================================================== Mouse ctggacgtctg-ttgtga--ttgttcagaaagatctc---------------- Rat ctggacgtctt-ttctga--ctgttcagaaagatctc---------------- GCF_003668045 ctgggtgtctt-ttctga--ctgctcagaaaaatccc---------------- Beaver ccgagcgtctt-ttctgagcatggtcagaatgattct---------------- Squirrel ctgag-gtct--ttctgc--gtggtcagaacgattcc---------------- Guinea pig ctgagcatctt-ttctgt--ggtgacagaaggatgcc---------------- Rabbit ------gcctt-ttctgc--ataaccagga--gtccc---------------- Pika ------gactt-ttctgc----aatcagaatggcatc---------------- Human ctaagcgtcct-ttctgc--cttgtcagaaggattcc---------------- Chimp ctaagcgtcct-ttctgc--cttgtcagaaggattcc---------------- Bonobo ctaagcgtcct-ttctgc--cttgtcagaaggattcc---------------- Gorilla ctaagcgtcct-ttctgc--cttgtcagaaggattcc---------------- Rhesus ctaagcgtcct-ttctgc--gttgtcagaaggattcc---------------- Marmoset ctaagcgtcct-ttctgc--ctagtc---aggattcc---------------- Tarsier gtgagcgtctt-ttctgc--gtgatcagaacgattcc---------------- Bushbaby acgagcgtctt-ttctgc--gtagtcagaacgattct---------------- Tree shrew gagagcgtctt-ttctgc--gtagtcaaacgtactct---------------- Malayan flying lemur atgagcttctt-ttctgc--gtggtcagaaggattcc---------------- Pig atgagtgtctt-ttctgc--cggctaagaaccattcc---------------- Dolphin gtg--tgtctt-ttctgc--tcgctaagaacgattcc---------------- Cow gtgaatgtcttattctgc--t-gcttaggatgattcc---------------- Sheep g----tgtcttattctgc--t-gctaaggatgattcc---------------- Horse gtgagtgtctt-ttctgc--ttggtaagaaccgttcc---------------- Chinese pangolin atgagcgtctt-ttctgc--ttgctaagaacgattct---------------- Dog ttgagtgtctt-ttctgc--gtggtaagaacgattcc---------------- Hawaiian monk seal gcaagtgtctt-ttctgc--ttggtaagaaccattcc---------------- Hedgehog atgagtgtctt-ttctac--tggataacaactattcc---------------- Shrew ----gtgtctt-ttctac--ttggtaagaaccattcc---------------- Elephant gtcagcgtctt-tgctgc--gtggtcaggatgactcc---------------- Tenrec gtcagcatctt-ttctgc--gtggccagaaggactcc---------------- Opossum ccatacacatt-ttcttc--ctcccacgaccttttcccttgttgatagaccag Zebrafish ===================================================== X. tropicalis ===================================================== Chicken ===================================================== Inserts between block 35 and 36 in window B D Pig 1bp B D Dolphin 1bp B D Cow 1bp B D Sheep 1bp B D Horse 1bp B D Chinese pangolin 1bp B D Dog 1bp B D Hawaiian monk seal 1bp B D Hedgehog 23bp B D Shrew 1bp B D Elephant 1bp B D Tenrec 1bp Alignment block 36 of 287 in window, 56744884 - 56744926, 43 bps B D Mouse ggagtg-ttctgtaccat---acagtccg-gctttcccggg-------cgacttg--------------- B D Rat ccagtg-ctccgcaccgt---acagtctg-gctttcccagg-------agacttg--------------- GCF_003668045 ccggcacccccgcaccct---acgatccg-acttctccggg-------aagcttg--------------- Beaver ccgagc-cctcctacc------cggtcag-ccttccgcagg-------agacctg--------------- B D Squirrel cggagc-cctcctgct------cagtctg-gcttccgcagg-------agacctg--------------- B D Guinea pig cagagc-cctcctgtc------cagtctg-gctactttagg-------agacctg--------------- B D Rabbit cga--c-tctcctgct------cagtttg-ctttctgcggg-------agatcgt--------------- B D Pika tga--c-cctccggtt------cagttgg-ccttctgggag-------agatctg--------------- B D Human ccgagc-cctcctgcc------cagtccg-gcttccgcagg-------agacctg--------------- B D Chimp ccgagc-cctcctgcc------cagtccg-gcttccgcagg-------agacctg--------------- B D Bonobo ccgagc-cctcctgcc------cagtccg-gcttccgcagg-------agacctg--------------- B D Gorilla ccgagc-cctcctgcc------cagtccg-gcttccgcagg-------agacctg--------------- B D Rhesus ccgagc-cctcctgcc------cagtccg-gcttccgcagg-------agacctg--------------- B D Marmoset ccgagc-cctcctgcc------cagtccg-gcttcagcagg-------agacctg--------------- B D Tarsier ctgagc-cctcctgcc------cggtccg-gcttccgcagg-------agacctg--------------- B D Bushbaby ccga-c-cctcctgcc------cagtccg-gcttccgcagg-------agacctg--------------- B D Tree shrew ccgagc-cctcctgcc------cagtctt-gcttccgcagg-------agacccg--------------- B D Malayan flying lemur ccgagt-cctcctgct------cagtacg-gcttccgcagg-------agacctg--------------- B D Pig -tgagt-ccttctgtt------cagtcggagcttccgcagg-------agacctg--------------- B D Dolphin -cgagc-ccctgtgct------tagtcgg-gcttccgcagg-------agacccg--------------- B D Cow -cgcgc-ccttatgct------cagtcgg-gcttccgcagg-------agacccg--------------- B D Sheep -cgcgc-ccttacgct------cagtcgg-gcttccgcagg-------agacccg--------------- B D Horse -ccagc-cgtcctgct------cagtcgg-gcttccgcagg-------agacccc--------------- B D Chinese pangolin -cgaac-ccttctgct------cagtctg-gcttccgcagg-------agacctg--------------- B D Dog -cgagc-tctcccgca------cggttgg-gcttctgc----------agaccag--------------- B D Hawaiian monk seal -tgagc-cctcctgca------cagttgg-gcttccac----------agaccag--------------- B D Shrew -ccagt-acttatgct------cagtctg-gcttctgcggg-------agactca--------------- B D Elephant -ggaac-ccttttgcc------tagtctg-gcttccgtagg-------agacct---------------- B D Tenrec -ggagc-cctcttgct------cggcccg-acttccgctgg-------agacctg--------------- B D Opossum -ggagt-gtcttttctgtggggtagattg-gctcccagaggtccatgtcgatccgtgttttcttaggcga B D Hedgehog ====================================================================== B D Zebrafish ====================================================================== B D X. tropicalis ====================================================================== B D Chicken ====================================================================== Inserts between block 36 and 37 in window B D Shrew 3bp Alignment block 37 of 287 in window, 56744927 - 56745260, 334 bps B D Mouse agtttgttttcttttttattgta----------------------------------------------c B D Rat agtttgttttc-tttttattgca----------------------------------------------c GCF_003668045 agtttgttttc--ttttattgtg----------------------------------------------c Beaver agtttgttttc-tttttactgtg----------------------------------------------t B D Squirrel tgtttgttttc--ttttactgcg----------------------------------------------c B D Guinea pig gctttgttttc--ttttactgca----------------------------------------------t B D Rabbit agtttgttttc--ttttactgcg----------------------------------------------t B D Pika agtttgttttc--ttttactgcg----------------------------------------------t B D Human agtttgttttc--ttttactgag----------------------------------ttttttttttttt B D Chimp agtttgttttc--ttttactgag---------------------------------tttttttttttttt B D Bonobo agtttgttttc--ttttactgag----------------------------------ttttttttttttt B D Gorilla agtttgttttc--ttttactgag-------------------------------------tttttttttt B D Rhesus agtttgttttc--ttttactgagtttttttttgtttttttgtttttttggtttttttttttgtttttttt B D Marmoset agtttgttttc--ttttactgag--------------------------------ttgtttttttttttt B D Tarsier agtttgttttc--ttttactaag----------------------------------------------t B D Bushbaby agtttgttttc--ctttactaag----------------------------------------------t B D Tree shrew agtttgtttcc--ttttactgcg----------------------------------------------t B D Malayan flying lemur agtttgttttc--tttctttgcg----------------------------------------------t B D Pig agtttgttttc--ttttactgca----------------------------------------------c B D Dolphin aggttgttttc--ttttactgcg----------------------------------------------t B D Cow agtttgttttc--ttttactgcg----------------------------------------------t B D Sheep agtttgttttc--ttttactgcg----------------------------------------------t B D Horse cgtttgttttc--ttttactgcg----------------------------------------------t B D Chinese pangolin agtttgttttc--ttttactgtg----------------------------------------------- B D Dog agcttgttttc--ttttacttca----------------------------------------------t B D Hawaiian monk seal actttgttttc--ctttacttca----------------------------------------------t B D Hedgehog agtttgttttc--ttttactgag----------------------------------------------c B D Shrew ggtttgttttc--ttttactgcg----------------------------------------------c B D Elephant -gtttgttttc--ctttactgcg----------------------------------------------t B D Tenrec agtttgtttt---ctttactgcg------------------------------gttttcttttctttctt B D Opossum agtttgttttc--ttttactaaa----------------------------------------------c B D Zebrafish ====================================================================== B D X. tropicalis ====================================================================== B D Chicken ====================================================================== Mouse tg------------tt--------------------------aa----agataaaatttaaaagacatta Rat tg------------tt--------------------------aa----agataaaatttaaaagacatta GCF_003668045 tg------------tt--------------------------aa----aaataaaatctaaaagacatta Beaver tg------------tt--------------------------aa----aaaataaattaaaaaggcgtta Squirrel tg------------tt--------------------------aa----aaaataaat-aaaaaggcgtta Guinea pig ag------------tt--------------------------aa----aatata-----aaagagtgtta Rabbit tg------------tt------------------------aaaa----aaaaaaaaaaaaaaaggcgtta Pika tg------------tt--------------atttaaaagaagaa----gaagaagaaaaaggaggtgcta Human tt------------tt---------------------------------------------aaggcgtta Chimp tt------------tt---------------------------------------------aaggcgtta Bonobo tt------------tt---------------------------------------------aaggcgtta Gorilla tt------------tt---------------------------------------------aaggcgtta Rhesus tt------------tt---------------------------------------------aaggcgtta Marmoset tt------------tt---------------------------------------------ttggcgtta Tarsier tg------------ttaaa---aaaaa-----------------------aaaaaaaaaaaaaggcgtta Bushbaby tg------------ttaaa---aagggggc------ggtggggg----gtggggggagaaggaggcatta Tree shrew tg------------ttaaaaccaaaccaaaccaaaacaaaaata----aacaaacaaaaaaacctcctta Malayan flying lemur tg------------ttgaa---aaagaaaa--gaaaagaaaaca----aaagaaaagaaaaaaggcttta Pig tg------------tt----------------aaaacagaacag----aacaaaacaaaaaacagcgtta Dolphin tg------------tt----------------aaaacgggacaa----aacaaaaca-aaaacagcgtta Cow tg------------tt----------------aaaacagaataa----aacaaaacataaaacagcgtta Sheep tg------------tt----------------aaaacagaataa----aacaaaacacaaaacagcgtta Horse tg------------tt----------------aaaacaaaaca-------------------cggcgtta Chinese pangolin ta------------tt----------------ataacaacacaac-acaaca-caaacaaaccggtgtta Dog aa------------tt------------aaccaaaacaacacaacaacagcagcaaggaaactggcattg Hawaiian monk seal aa------------tt-----------------aaacaaaacaacaacaacagcaaagaaactggcatta Hedgehog ag------------tt----------------aaaacaaaacaa----aacaaaacaaaaa--ggcctcg Shrew tgtttttttttttttt----------------aaaaaaaaac-----------agcagtaa--tgtc--- Elephant tg------------tt-------------------------taa----aaaaaaaaaaaaaaaggcgtta Tenrec tc------------tt-------------------------t---------------taaaccggcatta Opossum tg------------tt--------------------------aa-------------------------a Zebrafish ====================================================================== X. tropicalis ====================================================================== Chicken ====================================================================== Mouse ggtt-c-tttcttggtataggg------ag---aaaaagaaa-gtt-aaaat----gtttt-attc-gc- Rat ggct-c-tttcttggtattggg------tg---aaaaagaaa-gtt-aaaat----gtttc-attc-cc- GCF_003668045 gctt-c-tttcttggtgtaagg------agaacaaaaagaaa-ttt-aaaat----gtttt-attc-ac- Beaver gctt-c-tgccttggta--ggg------ag----aaaagaaa-atc-aaact----gcttt-agga-gca Squirrel actt-c-tttcttggta--ggg------ag----aaaagaaa-gta-aaaat----gcggt-agac-ata Guinea pig actt-cttttcttggta--ggg------ta----aaaagaa---tc-aaagt----acttt-agac-ga- Rabbit acct-c-tttctgagta--ggg------ag----aaaagagt-a---aaaat----gctct-ccac-gca Pika ccgt-c-tttcttcgta--ggg------ag----aaaagaaa-g----------------t-ccat-gta Human actt-t-tttcttggta--ggg------ag----aaaagaaa-gtc-tgaat----gacct-agat-gca Chimp actt-t-tttcttggta--ggg------ag----aaaagaaa-gtc-tgaat----gacct-agat-gca Bonobo actt-t-tttcttggta--ggg------ag----aaaagaaa-gtc-tgaat----gacct-agat-gca Gorilla actt-t-tttcttggta--ggg------ag----aaaagaaa-gtc-taaat----gacct-agat-gca Rhesus actt-t-tttcttggta--ggg------ag----aaaagaaa-gtc-taaat----gacct-agat-gca Marmoset ac------ttcttggta--ggg------ag----aaaataaa-gtc-taact----gtcct-atat-gca Tarsier actt-c-tttcttggta--gaa------ag----caaa-------------t----gccctaagag-gca Bushbaby acttct-tttcttggta-gggg------aa----aaaagaaa-gtc-taaat----gccct-tgat-aaa Tree shrew actt-c-tttcttgtta--gag------ag----aaaaaaaatgtc-aaaat----gccct-acac-gca Malayan flying lemur actt-c-tttcttggta--gggaacagaaa----aaaaaaaaagtg-aaaat----gccct-agac-gca Pig actt-a-tttctttgta--ggg------ag----aaaataaa-gtc-aaatt----gccct-agat-gca Dolphin actt-c-ttcctcggta--ggg------ag----aaaagaaa-gtaaaaaat----gccct-agac-gca Cow actt-c-tttctcagta--ggg------ag----aaaacaaa-gtcaaaaat----gccct-agat---- Sheep actt-c-tttctcagta--ggg------ag----aaaacaaa-gccaaaaat----gccct-agac-gca Horse actt-c-tttctcggta--ggg------aa----aaa--aaa-gtc-aaact----gccct-agac-gct Chinese pangolin actt-c-tttctaga-g--gag------aa----aag--aaa-atc-agatctaaattcct-ggac-aca Dog actt-c-tttctcggta--ggg------gg----aga--aaa-gta-aaaat----accct-agac-aca Hawaiian monk seal actt-c-tttctcggta--ggg------gg----a-a--aaa-gcc-aaaat----gtctt-agac-aca Hedgehog actt-ctttctctggga--gtg------ag----aaaagaaa-gta-aaaat---gccccc-agatggtg Shrew -------ttcctgggta--ggg------ag----aagagaaa-gta-aaaac----ccctt-agac-gca Elephant actt-c-tttcttgatg--ggg------ag----aa---aaa-gtc-aaaag----gcctt-gaac-gca Tenrec acgt-c-tttcttggtt--ggg------ag----aaaagaaa-atc-agaat----gcctt-gaac-gga Opossum acat-c-ttc---------aag------tc----aaagtgac-ctc--aaat----------aata-gca Zebrafish ====================================================================== X. tropicalis ====================================================================== Chicken ====================================================================== Mouse -------------------------------------cttattgcct----aactgctc--ag-tggaaa Rat -------------------------------------ttaacttctt---caattgctc--ag-gggaag GCF_003668045 -------------------------------------tcaatttactgcccagtttttc--ag-tgtaag Beaver g----aacttaaataatgcagagtt----agagagagcctatctttt---gaaattttc--ag-tataaa Squirrel g----aatttaaataatgcagagat----ag------cctaccttct---taatttctc--ag-cataaa Guinea pig -----------ggaggagataagat----ag------gctaccttct---taatttctc--ag-tgtaaa Rabbit t----attgtaaatacttcaga---------------gataccttct---taatgtttc--agccgtgaa Pika g----aatcgaactaattcgga---------------gataacttgc---taatgtctcatagccctaat Human g----aatttaaataatgtgtagat----ag------tccactttct---taatttctc--ag-cctaaa Chimp g----aatttaaataatgtgtagat----ag------tccactttgt---taatttctc--ag-cctaaa Bonobo g----aatttaaataatgtgtagat----ag------tccactttgt---taatttctc--ag-cctaaa Gorilla g----aatttaaataatgtgtagat----ag------tccactttct---taatttctc--ag-cctaaa Rhesus g----aatttaaataatgcgtagat----ag------tccactttct---taatttctc--ag-cctgaa Marmoset g----aatttaaataatgtgtagat----ag------tccactttct---taacatatc--ag-cctaaa Tarsier g----aatttaaatgat---tacat----ag------tcgactttct---tcatttctc--aa-cccaag Bushbaby t----atttaaaataatgagc--at----ag------tctattttct---taatttctc--ag-cctaaa Tree shrew gacaaaatctaaataatgtagagat----ag------cctatcttct---tagtttctc--ag-tttgaa Malayan flying lemur g----aatttaagtagtgcggagatacagag------cctaccttct---taattcctc--gg-cctaga Pig g----aaattaaataatgcggagataaagag------cctacctcct---taatttctc--tg-ccaaaa Dolphin g----aatttaaataatgcagagataaagag------cctaccttct---taatttctc--ag-ccagaa Cow --------ttaaataatacagagataaagag------cctaccttct---taatttctc--ag-ccaaga Sheep g----aaattaaataatgcagagataaagag------cctatcttct---taatttctc--aa-ccaaaa Horse g----aatttaaataaggcagagatacagag------cctaccttc----taatttctc--ag-ccaaaa Chinese pangolin g---------aaataatgcagagataaagag------cctactttct---taatttctc--ca-gcaaaa Dog g----aatctaaataatatagaaat-aagag------cctaccgttt---taatttctt--ag-ccgaaa Hawaiian monk seal g----aatttaaagaatacagagat-cagag------cccaccgttt---taatttctt--ag-ccgaaa Hedgehog g----aatcaatataatgaagagataccaag------tctccccctt---gaattcctc--tg-tcagaa Shrew g----aatttaagtaatgaagagataaagag------tccatcttct---taatcgcct--ag-cca-aa Elephant g----aattcaagtaatgc--agatagagag------cctacctccc---taacttctc--gg-tccaaa Tenrec g----aattcaaataatgc--agatagagag------cctatctcct---t-gcttgtc--gt-ttta-- Opossum a----ggactgaggagtgta---------ag------tccttctttt---ctaactctc--tg-tcca-- Zebrafish ====================================================================== X. tropicalis ====================================================================== Chicken ====================================================================== Mouse gttt-aagacaggcaga-g---g-----aaa-attt-aaataggaaag-----------------aga-a Rat gttt-aaga----caga-g---g-----aaa------aattagaaaag-----------------agg-a GCF_003668045 gttt-aagacgggcaga-g---g-----aaaaattt-aaataggaaag-----------------aggaa Beaver gttt-aaaaagtacaga-g---g-----aaa-aatt-aaatagcatag-----------------agg-g Squirrel gttt-aaaaagtgcaga-g---gggggaaaa-tact-aaataggaaag-----------------ggg-g Guinea pig gttt-aaaaactgaagg-g---g-----aaa--------atagacaaa-----------------aga-c Rabbit gttt-aaaaagcgcaga-g---g-----aaa-aatt-aaataa---ag-----------------ggg-g Pika gttt-caaaagcacaga-g---g-----aga-aatt-aaatag---gg-----------------ggg-g Human gttt-taaaagtgtaga-g---g-----aaa-aatt-aaataggaaag-----------------ggg-g Chimp gttt-taaaagtgtaga-g---g-----aaa-aatt-aaataggaaag-----------------ggg-g Bonobo gttt-taaaagtgtaga-g---g-----aaa-aatt-aaataggaaag-----------------ggg-g Gorilla gttt-taaaagtgtaga-g---g-----aaa-aatt-aaataggaaag-----------------ggg-g Rhesus gttt-taaaagtgtgga-g---g-----aaa-aatt-aaatgggaaag-----------------ggg-g Marmoset gttt-taaaaatgtagg-g---g-----gaa-aatt-aaataggaaag-----------------agg-a Tarsier gttt-taaaagcgcaga-g---g-----aaa-aatt-aaataggaaag------------------gg-a Bushbaby gttt-ataaagtgcagg-g---g-----aaa-aatt-aaataggaaag-----------------gag-g Tree shrew gttt-aaaaatcacaaa-t---g-----aaa-aaat-gaaatagagtg-----------------ggg-g Malayan flying lemur gttt-aaaaagtgcaga-g---g-----aaa-aatt-gaataggaaaa-----------------gag-g Pig gctt-aaaatgagcaga-g---g-----aac-aatt-aaatagaaaaa-----------------ggg-g Dolphin gttt-aaaaagagcaga-g---g-----aaa-aatt-aaataggaaaa-----------------ggg-g Cow cttt-aaaaagagcggg-gg--g-----aaa-aatt-aaataggaaaa-----------------ggg-g Sheep cttt-aaaaagagcggg-gggtg-----gga-aatt-aaataggaaaa-----------------ggg-g Horse ggct-aaaaagcacaga-g---g-----aaa-aatg-aaatagagacg-----------------ggg-g Chinese pangolin gtttaaaaaagtgcaga-g---g-----aaa-aaat-aaatggaaaag-----------------ggg-g Dog gttt-aaaaagtgcagg-g---g-----gga-aatt-aagtaggagaaggtggtggtggtggtggggg-g Hawaiian monk seal gttt-aaaaagtgcagg-g---g-----aaa-aatt-aagtagggaaa-----------------agg-g Hedgehog ggtt-taaaattgaagagg---a-----aaa-aact-aaataggagaa---------------gcagt-g Shrew agtt-taaaagtgcaga-g---a-----aaa-aatt-aaataggaaag---------------ttggg-g Elephant gatt-taaaaagccaga-g---g-----aaa-aatt-aaataggaaag-----------------gga-g Tenrec -------------caac-g---g-----aaa-gatt-gaataggaaag-----------------gga-g Opossum -tat-gaaaagaccaga-g---g-----gac-aattccattttgggtg-----------------cgg-t Zebrafish ====================================================================== X. tropicalis ====================================================================== Chicken ====================================================================== Mouse ag---atatttcctgtgctaatttcccgctttttgatgtt-cccaccaca-ctggcac-agttacctttt Rat aa---atatttc-----ctagttttttttttttca--gtt-cccaccacc-ttggtgc-aattacctttt GCF_003668045 aa---atatttcctgtaaccatttcttggtttttga-ctt-tccacggca-tccgcac-aatgacctttt Beaver aa---atcgttcctttaattatttcctgccttttgcagtt-gccagcaca-ttggcac-aattacctttt Squirrel aa---atagttcctttaattatttcctgccttttgctgtt-gccaccaca-ttggcac-aattacctttt Guinea pig aa---atggttcttctaattatttcctgctttttgcaatt-gccaacaca-ttggcac-aattatgtttt Rabbit aa---atagttcctttaattatttcctgcctttctcgatt-gccaacaca-ttggcac-aattatctttt Pika gg---ataactcctttaattatttcctgcctttctcg-tt-gccaccaca-ttggcac-aattatctttt Human aa---atagtttctttaattacttcctgcctttcttggtt-gccaccaca-ttggcac-aattatctttt Chimp aa---atagtttctttaattacttcctgcctttcttggtt-gccaccaca-ttggcac-aattatctttt Bonobo aa---atagtttctttaattacttcctgcctttcttggtt-gccaccaca-ttggcac-aattatctttt Gorilla aa---atagtttctttaattacttcctgcctttcttggtt-gccaccaca-ttggcac-aattatctttt Rhesus aa---atagtttctttaattacttcctgcctttcttggtt-gccaccaca-ttggcac-aattatctttt Marmoset aa---atagttcttttaattacttcctgcctttcttggtt-gccaccaca-ttggcac-aattatctttt Tarsier aa---atagttctggtaattatttcctgcctttcttggtt-gccaccaca-ttggcac-aattatc---c Bushbaby aa---atagttcctttaattatttcctggctttcttggtt-gcca-caca-ttggcac-aattatctttt Tree shrew ag---ttaattcctttaattatttcccgagtttcagggtt-atcaccaca-ctggcac-aatgatctttt Malayan flying lemur aa---atagttcctttaattatttcctgcctttcttggtt-gccaccaca-ttggcat-aattatctttt Pig aa---atagtttctttaatcattttctgtctttctcggtt-gccaccaca-ttggcac-aattatctttt Dolphin aa---atagttcctttaattgtttcctgcctttctcggtt-gccaccaca-ttggcac-aattatctttt Cow aa---atagttcatttaattatttcctgcctttctcagtc-gccaccaca-ttggcac-aattatctttt Sheep aa---atagttcatttaattatttcctgccttcctcagtt-gccaccaca-ttggcac-aattatctttt Horse aa---atagttcttttaattatttcctgcctttctcggtt-gccaccacg-ctggcac-aattatctttt Chinese pangolin gagggatagtgcctttaattatttcctgcgtttctgggtt-gccaccaca-ttggcac-aattatctttt Dog ggggaagagttcctttaattatttcctgcctttctctgtt-gccaccaca-ttggtac-aattatctttt Hawaiian monk seal ggggaatagttcctttaattgtttcctgcctttttctgtt-gccaccaca-ttggcac-aattatctttt Hedgehog aa---atagttcttttaatta-------------taatcc-accaccacc-ttggcacaaagtatctttt Shrew ga---atagttcctttaattatttcctgcctttctcagct-gccaccaca-ttggcac-aattatctttt Elephant aa--aatagcttctttaattatttcttgccttttttggtttgccaccaca-ttggcac-aattatctctt Tenrec aa--aatagtttctttaattatttcctgcctttcttggtt-------acacttatcac-aattatcgctt Opossum ag---ata---cctttaaatgttttctccttt-----att-aacaccaca-tagacac-atttgcctctt Zebrafish ====================================================================== X. tropicalis ====================================================================== Chicken ====================================================================== Mouse aa--agtaatt-aagcagtg----cac-ga-tttccca--------------tcttcttgtcct-ctgac Rat aa--agtaattaaaacagtg----cac-ga-ttcccca--------------tcttcttgtctt-ctgac GCF_003668045 aa--agtaattaaagcagtg----ctt-ga-tttctca--------------tctccgtgtttt-ctgat Beaver ta--agtaattaaagcagag----ccctga-tttctca--------------tcttcttgtttt-ctgac Squirrel ta--agcaattaaagcaggg----ccctga-tttctta--------------tcttcttgtttt-ttgac Guinea pig tc--gataattaaagcagag----ccttga-tttctca--------------tattcttgtttt-ctgcc Rabbit ta--agtaattaaagcaggg----gcctga-tttctca--------------tcttcttggttt-ctgat Pika ta--agcaattaaagca-gg----ccctga-ttcctcagctccttgctcctgtctcctggtttt-cggat Human ta--agtaattaaagcaggg----ctctga-tttctca--------------tcttcttgtttt-ctgac Chimp ta--agtaattaaagcaggg----ctctga-tttctca--------------tcttcttgtttt-ctgac Bonobo ta--agtaattaaagcaggg----ctctga-tttctca--------------tcttcttgtttt-ctgac Gorilla ta--agtaattaaagcaggg----ctctga-tttctca--------------tcttcttgtttt-ctgac Rhesus ta--agtaactaaagcaggg----ctctga-tttctca--------------tcttcttgtttt-ctgac Marmoset ta--agtaattaaagtagag----ctctga-tttctca--------------tcttcttgtttt-ctgac Tarsier ta--agtaattaaagcagga----ttctga-tttctca--------------tcttcttgtttt-ctgac Bushbaby ta--agtaattaaggcaggg----ttctga-tttctca--------------tcttcttgtttt-ctgac Tree shrew ------taatgaaagcagga----ccccga-tttctca--------------tctttttgtttt-ctgac Malayan flying lemur aa--agtaattaaagcagga----ccctga-tttctca--------------tcttcttgtttt-ctgac Pig aa--gataattaaagcataa----tcctta-tttgtca--------------tcttcttttttttttgac Dolphin ta--aataattaaagcatag----ccctga-tttctca--------------tcttcttgcttt-ctgac Cow ta--aataattaac-catag----ccctga-tttctca--------------tcttcttgtttt-ctgac Sheep ta--aataattaac-catag----ccctga-tttctca--------------tcttcttgtttt-----c Horse ta--agtaattaaagcagaa----cgctga-tttctca--------------tcttcttgtttt-ctgac Chinese pangolin ca--agtaattaaagcagag----cactga-tttctca--------------tcttcttgtttt-ctgac Dog ta--agtaattaaatcagag----ccctga-tttctca--------------tcttcttggatg-ctgac Hawaiian monk seal ta--agtaattaaagcagag----ccctga-tttctca--------------tcttcttgtttg-ctgcc Hedgehog ta--cacaattaagccagag----ttctga-tttctca--------------tcttcttgtttt-----c Shrew ta--agtaattaaagcagag----ccctga-tttctca--------------tcatcttgtttt-----c Elephant ta--agtaattgaagtaggtaggcccttga-tttctca-----------------tcttgtttt-----c Tenrec tgttagtaattaaaatagtg----ccctga-tttctca--------------tcttcttgtttt-----c Opossum gc--agtaactaaacaagag----gcttaactttttca--------------ttcccttgttgt-cgata Zebrafish ====================================================================== X. tropicalis ====================================================================== Chicken ====================================================================== Mouse t---gcaaattgacaaga----------------g-caatgtt-ctgggttatttgg---------aact Rat tgcggcgaattgacaaga----------------g-taaagct-ctgggttatttgg---------aact GCF_003668045 t---gggaattgacaaga----------------g-taaagtt-ctgagttatttgg---------aact Beaver t-----gaatttacaaga----------------g-ctcagtt-ttgtcttatttgg---------agct Squirrel c---atgaatttacagga----------------a-tccagtt-ttgtcttatttgg---------agct Guinea pig t---gtgaatttacaaga----------------g-c-cagtt-ctgtcttatttgg---------agct Rabbit t---gtgaatttccaaga----------------g-cccagtt-ctgtcttactctg---------agct Pika g---gtggatttccaagt----------------g-ctccact-ttgccttgctcggcggccgcctagcc Human t---gcaagtttacaaga----------------g-cccagtt-ttgtcttatttgg---------agct Chimp t---gcaagtttacaaga----------------g-cccagtt-ttgtcttatttgg---------agct Bonobo t---gcaagtttacaaga----------------g-cccagtt-ttgtcttatttgg---------agct Gorilla t---gcaagtttacaaga----------------g-cccagtt-ttgtcttatttgg---------agct Rhesus t---gcaagtttacaaga----------------c-cccagtt-ttgtcttatttgg---------agct Marmoset t---gcaagtttacaaga----------------g-cccagtt-ttgtcttatttgg---------agct Tarsier t---gcgaatttacaagc----------------g-ctcagtt-ttgtcttcttcgg---------agcg Bushbaby t---gcaaatttacaaga----------------gccccagtt-ttatcttattc-c---------agct Tree shrew t---gtgaatttagaaga----------------g-cccagtt-ttgtcctaattgg---------agct Malayan flying lemur t---gtgaatttacaaga----------------g-cccagtt-ttgttttattcgg---------agct Pig -----tgaatttacaaga---tcctta--taagag-ctcagtt-ttgtcttatttgg---------agct Dolphin t---gtgactttacaaga---tccttc--taagag-cctggtt-ttgtcttgttcgg---------agct Cow t---gtgactttacagga---tccttc--taaggg-cccagtt-ttgtcttatttgg---------agct Sheep t---gtgactttacagga---tccttc--taaggg-cccagtt-ttgtcttatttgg---------agct Horse t---gcgaatttacaaga---tccttc--taagag-atcagtt-ttgtcttattctg---------aact Chinese pangolin t---gtgagtttacaaga---tccttt--taaaag-ctcagtt-ttgtcttatatgg---------agct Dog -----cgagcttacaagactcttcttc--taggag-ctcagtt-ttgtcttattcag---------agtt Hawaiian monk seal t---gtgaatttacaaga---ttcttc--gaggag-ctcagtt-ttgtcttattcgg---------agct Hedgehog c---atgaatttacaaga---tccttc--taagag-cttggtt-ttgccttattggc---------agcc Shrew t---gtgacttaagatga---tctttc--taaaag-cttactt-ttgtcatattcaa---------agct Elephant t---atgaatttacaaga---tccttc--taacag-cccagtt-ttgtcttatttgg---------agct Tenrec t---gtgaatttacaaga---cccttctataagag-cccagat-ttgtagtatttcg---------agcc Opossum a---tagaatttaaagga---ctcttt--taaaaa-tgtaactcttaacctcttcag---------agcc Zebrafish ====================================================================== X. tropicalis ====================================================================== Chicken ====================================================================== Mouse ggtt-----------------------ggaacctta-gtt Rat agtt-----------------------ggagactcg-gtt GCF_003668045 agtt-----------------------ggagcctta-ggt Beaver agtt-----------------------ggagcttta-gtt Squirrel agtt-----------------------ggggcttta-gtt Guinea pig cact-----------------------agagcttag-gtt Rabbit actt-----------------------gcagcttta-ctt Pika actgga--------------------agcagctttt-aag Human actt-----------------------ggagccata-gtt Chimp actt-----------------------ggagccata-gtt Bonobo actt-----------------------ggagccata-gtt Gorilla actt-----------------------ggagccata-gtt Rhesus actt-----------------------ggagccgta-gtt Marmoset actt-----------------------ggagccgta-gtt Tarsier agtc-----------------------agagcttta-gtt Bushbaby agtt-----------------------gaagctctacgtt Tree shrew ggtt-----------------------gcagcttta-gtt Malayan flying lemur agtt-----------------------ggagcttta-gtt Pig ggtt------------------------gagcttta-gtt Dolphin ggtt-----------------------ggagcttta-ttt Cow ggct-----------------------ggagtttta-gtt Sheep ggct-----------------------ggagcttta-gtt Horse ggtt-----------------------ggagcttta-gct Chinese pangolin ggtt-----------------------ggagcttta-gtt Dog ggtt-----------------------ggagcttta-gtt Hawaiian monk seal ggtt-----------------------ggagcttta-gtt Hedgehog a------------------------------------gtt Shrew ggtt-----------------------aaacatttc-gtt Elephant ggtt-----------------------ggagcttta-gtt Tenrec g------------------------------------gcg Opossum agccaggttagggtgaacagaacactggaagctgca-ttc Zebrafish ======================================== X. tropicalis ======================================== Chicken ======================================== Alignment block 38 of 287 in window, 56745261 - 56745405, 145 bps B D Mouse ggagacg---ttgcccttgatttataggataagctgacctcactgacatttaaaggaagcccctgttcat B D Rat ggagacg---ttgcccttgatttataggataaactgacctcattgacatttaaaggaagcccctgttcgt GCF_003668045 ggagatg---ctgcccttgatttataggataaactgacctcactgacattt-aaggaaggccctgtccgt Beaver ggagaga-gttcgcccttgatttataggataaactgacctcactgacatttaaaggaagcccctgttcat B D Squirrel ggagaga-ctttgcccttgatttataggataaactgacctcactgacatttaaaggaagcccctgttcat B D Guinea pig ggagaga-gtttgcccttgatttataggataaactgacctcactgacatttaaaggaagcccctgttcat B D Rabbit ggagaga-gttcgcccttgatttataggataaactgaccccactgacatttggaggaagcccctgttcat B D Pika ggggaga-gttggcccttgatttataggataaactgacctccctgacatttagaggaaacccctgtgcct B D Human ggagaga-gtttgcccttgatttataggataaactgacctcactgacatttaaaggaagcccctgttcat B D Chimp ggagaga-gtttgcccttgatttataggataaactgacctcactgacatttaaaggaagcccctgttcat B D Bonobo ggagaga-gtttgcccttgatttataggataaactgacctcactgacatttaaaggaagcccctgttcat B D Gorilla ggagaga-gtttgcccttgatttataggataaactgacctcactgacatttaaaggaagcccctgttcat B D Rhesus ggagaga-gtttgcccttgatttataggataaactgacctcactgacatttaaaggaagcccctgttcat B D Marmoset g--gaga-gtttgcccttgatttataggataaactgacctcactgacatttaaaggaagcccctgttcat B D Tarsier ggagaga-gtttgcccttgatttataggataaactgacctcactgacatttaaaggaagcccctgttcat B D Bushbaby ggagaga-gtttgcccttgatttataggataaactgaccccagtgacatttaaaggaagcccctgttcat B D Tree shrew ggaggga-gtatgcccttgatttataggataaactgacctcactgacatttaaaggaagcccctgttcat B D Malayan flying lemur ggagaga-gtttgcccttgatttataggataaactgacctcactgacatttaaaggaagcccctgttcat B D Pig g--gcga-gtttgcccttgatttataggataaactgacctcactgacatttagaggaagcccctgttcat B D Dolphin gaagaga-gtttgcccttgatttataggataaactgacctcactgacacttaaaggaagccccggttcat B D Cow ggagaga-gtttgcccttgatttataggataaactgacctcactgacatttaaaggaagcccctgttcat B D Sheep ggagaga-gtttgcccttgatttataggataaactgacctcactgacatttaaaggaagcccctgttcat B D Horse ggagaga-gtttgcccttgatttataggataaactgacctcactgacatttaaaggaaggccctgcgcat B D Chinese pangolin ggagaga-gtttgcccttgatttataggataaactgacctcactgacatttaaaggaagcccctgttcat B D Dog ggagaga-gtttgcccttgatttataggataaactgacctcactgacatttaaaggaagcccctgttcat B D Hawaiian monk seal ggagaga-gtttgcccttgatttataggataaactgacctcactgacatttaaaggaagcccctgttcat B D Hedgehog ggagaga-ttttgcccttgatttataggataaactgacctcactgacatttaaaggaagcccctgtgcat B D Shrew ggagagc-gtttgtccttgatttataggataaactgacctcactgacatgtaaaggaagcccctgttcat B D Elephant ggagaga-atttgcccttgatttataggataaactgacctcactgacatttaaaggaagctcctgttcat B D Tenrec ggagagt-gtttgcccttgatttataggctaacctgacctcactgacatttaaaggaagcccctgttcat B D Opossum tgagggttgtttgcccttgatttataggataaactgacctcgctgacatttaaaggaaggtcctattcat B D Chicken -ggggcc-gttcgcccttgatttataggataaactgacctctctgacacggaaaggaagcccctattcat B D Zebrafish ====================================================================== B D X. tropicalis ====================================================================== Mouse gggaaagtgtgagatcagcagaaatgggggctcacagggggaatctcaatttcttaagataacttcaggc Rat gggaaagtgtgagatcagcagaaatgggggctcacaggggg-atctcaatttcttaagataactttagac GCF_003668045 gggaacgtgtgagatcagcagaaat-ggggctcacaggggg-atctcagtttcttaagataacttcaggc Beaver gggaaagtgtgagatcagca-aaatgggggctcacaggggg-atctcaatttcttaagataacttaaggc Squirrel gggaaagtgtgagatcagcagaaatggaagctcacaggggg-atctcaatttcttaagataacttcaggc Guinea pig gggaaagtgtgagatcagcagaaat-gaggctcacaggggg-atctcaatttcttaagataacttcaggc Rabbit gggaaagtgtgagatcagcagaaatgggggcttgcagggag-atctcaatttcttaagataacttcaggc Pika gggaaagtgtgagatcagcagaaatgggggctcgcaggggg-atctcggtttcttaacacaacttcaggc Human gggaaagtgtgagatcagcagaaatgggggctcacaggggg-atctcaatttcttaagataacttcaagc Chimp gggaaagtgtgagatcagcagaaatgggggctcacaggggg-atctcaatttcttaagataacttcaggc Bonobo gggaaagtgtgagatcagcagaaatgggggctcacaggggg-atctcaatttcttaagataacttcaggc Gorilla gggaaagtgtgagatcagcagaaatgggggctcacaggggg-atctcaatttcttaagataacttcaggc Rhesus gggaaagtgtgagatcagcagaaatgggggctcacaggggg-atctcaatttcttaagataacttcaggc Marmoset gggaaagtgtgagatcagcagaaatgggggctcacaggggg-atctcaatttcttaagataacttcaggc Tarsier gggaaagtgtgagatcagcagaaatgggggctcacagggga-atctcaatttcttaagataacttcaggc Bushbaby gggaaagtgtgagatcagcagaaatgggggctcacaggggg-atctcaatttcttaagataacttcaggc Tree shrew gggaaagtgtgagatcagcagaaatgggggctcacaggggg-atctcaatttcttaagataacttcaggc Malayan flying lemur gggaaagtgtgagatcagcagaaatggggactcacagggag-atctcaatttcttaagataacttcaggc Pig gggaaagtgtgagatcagcagaaatgggggcacgcaggggg-atctcaatttcttaagataacttcaggc Dolphin gggaaagtgtgagatcagcagaaatgggggcgcgcaggggg-atctcaatttcttaagataacttcaggc Cow gggaaagtgtgagatcagcagaaatgggggcgcgcaggggg-atctcaatttcttaagataacttcaggc Sheep gggaaagtgtgagatcagcagaaatgggggctcgaaggggg-atctcaatttcttaagataacttcaggc Horse gggaaagtgtgagatcagcagaaaagggggctcgcaggggg-atctcaatttcttaagataacttcaggc Chinese pangolin gggaaagtgtgagatcagcagaaatgggggctcgtaggggg-atctcaatttcttaagataacttgagga Dog gggaaagtgtgagatcagcagaaatgggggctcacaggggg-atctcaatttcttaagataactacaggc Hawaiian monk seal gggaaagtgtgagatcagcagaaatgggggctcacaggggg-atctcaatttcttaagataacttcaggc Hedgehog gggaaagtgtacgatcagcagaattgggggctcgcaggggg-atctcaatttcttaagataacttcagac Shrew gggaaagtgtgagatcagcagaaatgggggctcaca-gggg-atctcaatttc-taagataactttaggc Elephant gggaaagtgtgagatcagcagaaatgggggctcacaggggg-atctcaatttcttaagataacttcaggc Tenrec gggaaagtgtgagatcagcagaaatgggggctcacagggga-atctcaatttcttaagataactttaggc Opossum gggaaagtgtgagatctgcaggaattggggctctctgagag-atctcagtttcttaagtcatctgctggc Chicken gggaaagtgtgagatcagcagaaaagggcactcaccgagtg-ggctcaatttctcaagccagccccatgt Zebrafish ====================================================================== X. tropicalis ====================================================================== Mouse ttatgccc Rat ttatgccc GCF_003668045 ttgtgccc Beaver ttgtgccc Squirrel ttgtgccc Guinea pig ttgtgccc Rabbit ttgtgccc Pika ttgtgtgt Human ttgtgccc Chimp ttgtgccc Bonobo ttgtgccc Gorilla ttgtgccc Rhesus ttgtgccc Marmoset ttgtgccc Tarsier ttgcgccc Bushbaby ttgtgccc Tree shrew atgtgccc Malayan flying lemur ttgtgccc Pig ttgtgccc Dolphin ttgtgccc Cow ttgtgccc Sheep ttgtgccc Horse ttgtgccc Chinese pangolin ttgtgccc Dog ttgtgccc Hawaiian monk seal ttgtgccc Hedgehog ttgtgccc Shrew ttgtgccc Elephant ttgtgccc Tenrec ttgtgccc Opossum tgatgccc Chicken tggtgccc Zebrafish ======== X. tropicalis ======== Inserts between block 38 and 39 in window B D Chicken 571bp Alignment block 39 of 287 in window, 56745406 - 56745587, 182 bps B D Mouse accgactgccttttgtctgggactgcaa-agacca-gca------ggcagttgggaatc---------ag B D Rat accgattgccttttgtctgggacggcag-caaata-gcgtcagacagtagttgtgaatc---------ag GCF_003668045 accgactgccttttgtctgggaaggcaa-aggcca-tca------ggcc----tgaacc---------ag Beaver accgactg-cttttgtctgggaaggcaa-agagag-tca------ggcagttctggact--------aaa B D Squirrel accgagtgccttttgtctggaaaggcaa-agaac--tca------ggcagttctggacc---------ca B D Guinea pig accgactgccttttgtctgggaaggcag-aaaagagtca------ggcagttttgtacc---------aa B D Rabbit accgagtgccttttgtctgggaaggcaa-ggagag-aca------ggcagttctggacc--------taa B D Pika accagctgcattttgtctgggagggcaatggggag-atg------aggggttttggacc--------caa B D Human accgactgccttttgtctgggaaggcaa-agacag-aca------ggcagttctggacc--------aaa B D Chimp accgactgccttttgtctgggaaggcaa-agacag-aca------ggcagttctggacc--------aaa B D Bonobo accgactgccttttgtctgggaaggcaa-agacag-aca------ggcagttctggacc--------aaa B D Gorilla accgactgccttttgtctgggaaggcaa-agacag-aca------ggcagttctggacc--------aaa B D Rhesus accgactgccttttgtctgtgaaggcaa-agacag-aca------ggcagttctggacc--------aaa B D Marmoset actgactgccttttgtctgggaaggcaa-aaacag-aca------ggcagttttgaacc--------aaa B D Tarsier accgactgccttttgtctgggaaggcaa-agagag-aca------ggcagctctggacc--------caa B D Bushbaby accgactgccttttgtctggaaaggcaa-agagag-aca------ggcagtaatggacc--------aaa B D Tree shrew accgactgccttttgtctgggaaggc---agagag-aca------ggcagttttagacc--------aaa B D Malayan flying lemur accgactgccttttgtttgggaaggtaa-agagag-aca------ggcagttctggatc--------aaa B D Pig accaattgccttttgtctgggaaggcaa-ggagag-att------ggcaattctgggcc--------aag B D Dolphin accgattgccttttgtctgggaaggcaa-gaagag-act------ggcagttctgggcc--------aaa B D Cow accgattgccttttgtctgggaaggcaa-ggaaag-act------ggcagttctgggcc--------aaa B D Sheep accgattgccttttgtctgggaaggcaa-ggaaag-act------ggcagttctgggcc--------aaa B D Horse accgattgccttttgtctgggaaggcaa-agagag-act------ggcagttcagcacc--------aaa B D Chinese pangolin accgattgccttctgactgaaaaggc-----agag-act------ggcagttctgggcc--------aaa B D Dog accgattgccttttgtctgggaaggcaa-agagag-att------ggcagttctttgcc--------aaa B D Hawaiian monk seal accaattgccttttgtctgggaaggcaa-agagag-act------ggcagttctttgcc--------aaa B D Hedgehog agcaactgtcttttgtctggcaaggcaa-agagaa-act------ggaagttgggggggggggaggcaaa B D Shrew accgactgtcttatgtctggaaaggcaa-aaagag-aca------ggcagttctgggca--------aaa B D Elephant accaactgccttttgtctgggaaggtaa---agag-ata------ggcagttctgggac--------aaa B D Tenrec accgactaccttttgtctgggaaagcaa-ctagag-aca------ggcacttctgggcc--------caa B D Opossum atcgactacattttgctacggaagacga-agagat-ata------gaaagccctgagct--------gga B D Zebrafish ====================================================================== B D X. tropicalis ====================================================================== B D Chicken ====================================================================== Mouse tg--atggctttctggtac-aaaaataggagc-ac--aatc-tacttc-tttgga--------gggggag Rat tc--atggcttcctggtac-aaaaatgggaac-ac--aatc-tttgtc-tttgga--------gggggag GCF_003668045 cc--atggcttcctgctgc-aaaaatgagcctggc--aatc-tacttg-tttgga---------ggggag Beaver ac--acaacttcctggtgc-aaaaatgggaac-ac--aa-c-tatttc-tttgga-------aggggtag Squirrel a---acagtctcttggtgcaaaaaataggagc-ac--aatc-tatttc-tttgga-------agggggag Guinea pig a---acagtttcctggtgcaaaaaataggaac-ac--aa-----tttc-ttggga--------ggggggg Rabbit ac--accccatcctggtgc-aaaaatgggaac-ac--agtc-taatc--tttgag--------gggggag Pika ac--accctttcctggtac-aaaactgggagc-ccggagtt-tagtttgtttagt--------gtgggag Human ac--acagtttcctggtgc---aaatggg-ac-tc--aatc-taattc-ttgggggtggtagaggaggag Chimp ac--acagtttcctggtgc---aaatggg-ac-tc--aatc-taattc-ttgggggtggtagaggaggag Bonobo ac--acagtttcctggtgc---aaatggg-ac-tc--aatc-taattc-ttgggggtggtagaggaggag Gorilla ac--acagtttcctggtgc---aaatggg-ac-tc--aatc-taattc-ttgggggtggtagaggaggag Rhesus ac--acagtttcctggtgc---aaatggg-ac-tc--aatc-caattc-ttgggggtggtagaggaggaa Marmoset ac--acagtttcctggtgc---aaatggg-ac-tc--aatc-taattc-ttgagggtggtagaggaggag Tarsier ac--acagattcctggtgc---aaatagg-aa-tc--catt-taattc-ttggagg-------gggggga Bushbaby ac--acagtttcttggtgc---aaatggg-aa-tc--aatc-tagttc-tttggggtt-----gggaaaa Tree shrew ----acagtttcctggtgc---aaatgggaac-gc--aatc-taattc-tttgga-------ggagggag Malayan flying lemur ac--acagtttcctggtgt---gaatgggaac-ac--aatc-tagttc-tttggat------agggggaa Pig gc--acagtttcctggtgc---aaactggaac-ac--aatc-taattc-tttgga------gagggggag Dolphin at--acagtttcctggtgc---aaattggaac-ac--aatc-taattc-tttgga------gagggggag Cow at--cctgtttcctggtgc---aaattggaac-ac--aatcttaattc-ttcggc------gagggggag Sheep at--actatttcctggtgc---aaattggaac-ac--aatcttaattc-tttggc------gagggggag Horse ac--actgtttcctggtgc---aaattagaac-ac--aatc-taattc-tttgga------gaggg-gag Chinese pangolin a---acggtttcctggtgc---aaattggaac-ac--aatc-taattc-tttgga------gagggagag Dog at--acggtttcctggtgc---aaattggaac-ac--aatc-tgattc-tttgga------gaggg---g Hawaiian monk seal ac--gcagtttcctggtgc---aaattggaac-ac--aatc-taattc-tttgga------ggggg---g Hedgehog gc--acagcttcctggtgc---aaattggaac-cc--aatc-taatta-tttgga------gaaggggac Shrew ac--acaatttcctggtac---aaaacggaat-ac--aacc-taattc-tttgga------gagggggaa Elephant ac--atggtttcctggtgc---aaataggaac-ac--aatc-----ta-atgggt-------gggggcgg Tenrec ac--atgctttcttggtgc---aaataagaac-ac--attc--aattc-tttagg-------gggagagg Opossum acagagagagcctcaatcc---aaatgagaac-ac--gacc-taatta-aattgt--------gggggaa Zebrafish ====================================================================== X. tropicalis ====================================================================== Chicken ====================================================================== Mouse ac--agt---g----------------------------------------------------------- Rat acaaaat---g----------------------------------------------------------- GCF_003668045 gcatggt---g----------------------------------------------------------- Beaver gcatagt---g----------------------------------------------------------- Squirrel acatagt---g----------------------------------------------------------- Guinea pig taatggt---g----------------------------------------------------------- Rabbit gcatggt---g----------------------------------------------------------- Pika gcacggt---g----------------------------------------------------------- Human acatagt---g-------------------------------------------------aaaaaaaaaa Chimp acatagt---gaaa----------------------------------------------aaaaaaaaaa Bonobo acatagt---g-------------------------------------------------aaaaaaaaaa Gorilla acacagt---gaaa----------------------------------------------aaaaaaaaaa Rhesus acatagt---g--------------------------------------------------gaaaaaaaa Marmoset acatagt---g----------------------------------------------------------- Tarsier gcatagt---g----------------------------------------------------------- Bushbaby atatagt---g----------------------------------------------------------- Tree shrew gcatagt---gaaaagacaaaagaaaagaaaagaagagaaaaggaaagaaaaaagaaaagaaagaagaga Malayan flying lemur gcagagc--------------------------------------------------------------- Pig gcagagt---g----------------------------------------------------------- Dolphin gcatagt---g----------------------------------------------------------- Cow gcatagt---g----------------------------------------------------------- Sheep gcatagt---g----------------------------------------------------------- Horse gaataat---g----------------------------------------------------------- Chinese pangolin gaatagt---g----------------------------------------------------------- Dog gaggaag---g----------------------------------------------------------- Hawaiian monk seal gaatagg---g----------------------------------------------------------- Hedgehog ccttaat---g---------------------------------------------------------gg Shrew gcatagt---g----------------------------------------------------------- Elephant tcatagt--gg----------------------------------------------------------- Tenrec gcaaagtgggg----------------------------------------------------------- Opossum actcatt---c----------------------------------------------------------- Zebrafish ====================================================================== X. tropicalis ====================================================================== Chicken ====================================================================== Mouse -----a--------------gaataagctgac---agttgaaaagaaaactttccac-ctctggggaatc Rat -----a--------------aaataggctgac---agtagaaaaaaaaacttttcac-ctctgcatagtc GCF_003668045 -----a--------------aaataggctgac---agttgaaaagaaaacttttctt-ctctggggaacc Beaver -----c--------------aaaaagattgat-agagctgaaaagaaaacttttctt-ccctaggga-cc Squirrel -----a--------------aaaaaggctgat-ggagttgaaaagaaaacttttctt-ctctaggga-tc Guinea pig -----a--------------caaaaggctgac-agagatgaaaag--------tttt-ctctaggga-gc Rabbit -----a--------------aaacagactgac-agagttgcaaagaaaaattttctt-cttgagaga-tt Pika ---------------------------------------ggggggaaaaagtctcct-ctctggaga-tt Human aaaaaa--------------aaaaaggctgac-agagtttaaaagaaaacttttcct-gcctaggga-tc Chimp aaaaaa--------------aaaaaggctgac-agagtttaaaagaaaacttttcct-gcctaggga-tc Bonobo aaaaaa--------------aaaaaggctgac-agagtttaaaagaaaacttttcct-gcctaggga-tc Gorilla aaaaaa--------------aaaaaggctgac-agagtttaaaagaaaacttttcct-gcctaggga-tc Rhesus aaaaaa--------------aaaaagactgac-agagttgaaaataaaacttttctt-gcctaggga-ta Marmoset -gaaaa--------------aaaaaggctgac---agttgaaaagaaaacttttcct--cctaggga-tt Tarsier -----a--------------caaaaggctgac-agaattgaaaagaaaacttttctt-gcctaggga-tc Bushbaby ---gac--------------gaaaaagctgac-agaattgaaaagcaaacttttctt-gcctcagga-tc Tree shrew agaaaa--------------ggaaaggttgac-agagttgaaaagaaaacttttctt-ccccaggga-tc Malayan flying lemur ----aa--------------gaaaaggctgat-agagttgaagagaaaacttttctt-ccctaggga-tc Pig -----a--------------aaaaagactgac-agacttgaaaagaaaacttttcct-ccctaggga-tc Dolphin -----a--------------aaaaagactgac-agagttgaaaagaaaacttttctt-ccctaggga-gc Cow -----a--------------aaaaagactgac-agagttgaaaagaaaacctttctt-ccctaggga-gc Sheep -----a--------------aaaaagactgac-agagttgaaaagaaaacctttctt-ccctaggga-ac Horse -----a--------------aaaaagactgac-agagttgaaaagaaaactttcctt-ccctaggga-tc Chinese pangolin -----a--------------aaaaagactgacaagagttgaaaagaaaacttttctt-ctctaggga-tt Dog -----ggcggggggagagttgaaaagac-------------------aaccgtgctt-ccctagggg-tc Hawaiian monk seal -----a--------------aaaaagactgac-------------agagttgatctt-ccctgggga-tt Hedgehog aaaaaa--------------aaaaagactgac-agagttgaaaagaaaacttttctc-aactaggaa-tc Shrew -----a--------------aaaaagactgac-agaattgaaaagaaaacttttttc-ccctaggga-cc Elephant -----a--------------aaaaagtctgac-agagttgaaaagaaaactttttttcccccagggactc Tenrec -----a--------------aaaaagcctgat-ggagttgaaaagagaacttgtctt-ccctagggactc Opossum --------------------aagggggtagac-aaaatttaaaagaaag---ttctt-ccacagaaa-tc Zebrafish ====================================================================== X. tropicalis ====================================================================== Chicken ====================================================================== Mouse ctgcaaccagaccaaatgtcag Rat ctgcaaccagaccgaatgtcag GCF_003668045 ctgcaatcagaccagatgtcag Beaver ctacaatcagaccaaatgtcag Squirrel ctacaatcagaccaaatgtcaa Guinea pig ctacaatcggaccaactatcag Rabbit ctgcagtcagaccaaatgtcag Pika ctacagacagatcaaaagtcag Human ctaccatcagagcaaatgtcag Chimp ctaccatcagagcaaatgtcag Bonobo ctaccatcagagcaaatgtcag Gorilla ctaccatcagagcaaatgtcag Rhesus ttaccatcagagcaaacgtcag Marmoset ctcccatcagagcgaatgtcag Tarsier ctgcaaccagaccaaatgtcag Bushbaby ctacaatcagactaaaggtcac Tree shrew ttacagtcagaccaaaggtcag Malayan flying lemur ctacaatcagaccaaatgtcag Pig ctacaatcagaccaaatgtcag Dolphin ctacaatcagaccaaatgtcag Cow ctacaatcagaccaaatgtcag Sheep ctacaatcagaccagatgtcag Horse ctacaatcagaccaaatgtcag Chinese pangolin ctacaatcagaccaaatgtcag Dog ctatagtcagaccaactatccg Hawaiian monk seal ctacaatcagaccaagtatcag Hedgehog ctacagccagagcaaatatcag Shrew ctacaaaaagaccatatggtag Elephant ctacaatcagagtaaatgtcag Tenrec ccacaagcagagcaaatgccag Opossum --atagttagactaagtgtcag Zebrafish ====================== X. tropicalis ====================== Chicken ====================== Inserts between block 39 and 40 in window B D Opossum 1545bp Alignment block 40 of 287 in window, 56745588 - 56745985, 398 bps B D Mouse gtcgggaagaatcggat--ta-tagaaggcagtggtgc-ctccacgtagatac-tgttgtctgtttgtga B D Rat gtagggaggaattggag--ta-gagaaggcagtgatgc-ttccgggtagataagtgttgtctatttgtga GCF_003668045 gtaggaaagcatgggat--ta-tgggagggagtgacgg-ttccttgtagacac-tgttgtttattttcga Beaver ttaggaaagtattggat--ta-tggagaggagcaactc-ttcattgtaggtat-tgctgttgattctgga B D Squirrel ttaggaaagtataggat--ca-tggagaggcacaactt-ttc---------at-tgttgttgattgtgga B D Guinea pig tcgaggaaatattggat--ta-tagagaagagcaactc-ttccctgttgctat-tgctgatgattctgga B D Rabbit ttggcaaaggattggct--tactggagag-agcaaatc-ttcatggcagatac-ttgtgttgactctggg B D Pika ctggaaaagtgttggat--tg-tggtg------aaaac-ttcactgtagtgac-tttggttggttctggg B D Human ttgggaaagtattggag--aa-tggaaaggagcaactt-ttcctttcagatat-tattg-tgattttgga B D Chimp ttgggaaagtattggag--aa-tggaaaggagcaactt-ttcctttcagatat-tattg-tgattttgga B D Bonobo ttgggaaagtattggag--aa-tggaaaggagcaactt-ttcctttcagatat-tattg-tgattttgga B D Gorilla ttgggaaagtattggag--aa-tggaaaggagcaactt-ttcctttcagatat-tattg-tgattttgga B D Rhesus ttgggaaagcattggac--aa-tggaaaggagcaactt-ttccttttagatat-tgttg-tgattttgga B D Marmoset ctgggaaagtactggag--aa-tggaaaggagcaactc-ttccttatagacat-tgttg-tgattttcga B D Tarsier ttaggaaatgtttgaag--ta-tggagaggagcagctgactcctcgtagatat-tgttgttgattttgga B D Bushbaby ttggaaaacgattggat--tg-tggaaaggaacaactc-ttccttgtagatgt-------tgattctgga B D Tree shrew ttggaaaggtattggat--ta------aggaacaactc-ttctttggagatag-tgtgcttgattctggg B D Malayan flying lemur ttgggaaagtattggat--ta-tggagaggagcaactc-ttcactatc-atat-tgttgttgattctcga B D Pig ctgaaaaggtattagat--ca-tggagaggagcaactc-ttcattctacatgt-tgt---tgattctaga B D Dolphin ttgaaaaagtattagat--ta-tggagaggagcaactc-ttcattctacatgt-tgt---tgattctgga B D Cow tcggaaaagtattagat--ta-tggagagaagcaaccc-ttcgttctacatat-ggt---tgattctggg B D Sheep ttggaaaagtattagat--ta-tggagagaagcaactc-ttcattctacatat-tgt---tgattctggg B D Horse ttggaaaagtattggct--ta-tggagaggagcaactt-ttcattctagatgt-tgt---tgattctgca B D Chinese pangolin ttggaaaagtattggattata-tggagagaagcaactc-ttcattctaga----tgt---cgattctgga B D Dog ctggaaaagtagtggattata-tggagaggagtaactc-ttcattctaga----tgt---tgattctgga B D Hawaiian monk seal ttggaaaagtaatggattata-tgcagaggagcaattt-tttattctagatgt-tgt---tgattctgga B D Hedgehog ctaggaaagtactgggt--ta--gcaaaggagcaactc-agaagggtgga----tgt---tgattctgaa B D Shrew atgggaaag-attgg----------------gcaactc-tttatactaga----------tgattctgga B D Elephant ttgagacagtatcggat--ta-tggtgaggagcaactc---aattccagatat-tgttgttaattctgag B D Tenrec tccagaaagtattggat--ta-tggttcgatgcaactc-ttaattccagatat-ggttgttgcttctgag B D Zebrafish ====================================================================== B D X. tropicalis ====================================================================== B D Opossum ====================================================================== B D Chicken ====================================================================== Mouse tgtcacctttaaacaaa------------------caggtttctgac-aaatctgtgcatat-aagaagg Rat tgtcacttttaaacaag------------------cagggttctgac-aaatctgtgcatgt-aaaaggg GCF_003668045 tgtcacctttagacaac------------------caggtttccgacaaaatctgtgcatat-aacaagg Beaver tgtcagctttaaacaac------------------ctggtttctgaa-aattttgtgaatat-gaaaaga Squirrel tgtcagcgttgaacaac------------------atggtttcagac-aaatctgtaaacac-agaatga Guinea pig gactggctctaagcaac------------------ttgcttactgac-aaatctgcgaacat-aaaacaa Rabbit tgccagctttaaacaag------------------gtggtt------------tgtgaacat-aaaatga Pika ---cagctttaggcagt------------------gtggtttctgac-acatctgtgaaagg-aaaatga Human tgccagctttaaacaac------------------ccagtttgtgac-acatttgtgattataaaaatga Chimp tgccagctttaaacaac------------------ccagtttgtgac-acatttgtgattataaaaatga Bonobo tgccagctttaaacaac------------------ccagtttgtgac-acatttgtgattataaaaatga Gorilla tgccagctttaaacaac------------------ccagtttgtgac-acatttgtgattataaaaatga Rhesus tgccagctttaaacaac------------------ccagcttgtgac-aaatttgtgattataaaaatga Marmoset tgccagctttaaacaac------------------ccagattctgac-aaatttgtgactat-aaaatga Tarsier caccaactttgaacaac------------------ctggtttctgac-taatctaggaatat-gaaatga Bushbaby tgtcagctttaaacaactagatttttagacaaccacatatttttgac-agatctgtgaatatgaa----a Tree shrew tgccaactttaaac-ac------------------taggtttctgac-aaatttgtgaacac-caaatga Malayan flying lemur tgccagctttaaacgac------------------ctagtttctgac-aaatctgtgaatat-aaaacga Pig tgccagctttaaacaac------------------ctgttttctgacaaaaattgtgaatat-aagatga Dolphin taccagctttaaacaac------------------ctgttttctgac-aagtctgtgaatat-aaaatga Cow tgccagctttaaacaac------------------ctgttttctgac-aaatctatgaatat-aaaatga Sheep tgccagctttaaacaac------------------ctgttttctgac-aaatctgtgaatat-aaaatga Horse tgccagctttaaacaac------------------ctgttttctgac-aaatctgtgaatct-aaaatga Chinese pangolin tgccagatttaaacgac------------------ctgttttctgac-aaatctgtgactat-aaaatgt Dog tgccagctttaaacgac------------------ctgttctctgac-aaatctatgaatat-aaaatga Hawaiian monk seal tgccagctttaaacaac------------------ctgttttctgac-aaatctgtgactat-aaaatga Hedgehog tgccagctt---acagc-------------------------ataac-ctattt---tctga-caagt-c Shrew tgccaactttaaacagc-------------------------ctaac-aaatttgtatatgt-aaaataa Elephant tgccagctttaaacaac------------------ctggtttttgac-aaatttgtgaatat-agca--- Tenrec tgccaacttcatacaac------------------ccaacttcagac-acatttgtgactag-ag----- Zebrafish ====================================================================== X. tropicalis ====================================================================== Opossum ====================================================================== Chicken ====================================================================== Mouse taatttct-----------------ccaagt-gactgctc--t--ttg-----aag-cacctgtatcaga Rat taatttct-----------------ccaaat-gaccgctc--t--ttg-----aaa-cacctgtatcaga GCF_003668045 taacttcc-----------------ctggat-ggccactc--t--ttg-----aag-gacctataccaga Beaver taattcctg----------------caaaac-aaccaccc--a--ttt-----gaa-gccctgtgtcaga Squirrel taatttctt----------------tgaaat-gatcaccc--c--ttt-----aaa-acactgttttgga Guinea pig ggatttgta----------------caaaat-gaacatcc--c--ttc-----taa-gctctttatcaga Rabbit tcatttcta----------------taaaat-gatcaccc--c--ctc-----aaa-gcactaggtcaca Pika tcatttcta----------------taaaat-gatcaccc--c--tac-----aaatgccctgtgg---a Human tcatttcta----------------caaaaatgctcactc--t--ttt-----aaa-gcactgtgttaga Chimp tcatttcta----------------caaaaatgctcactc--t--ttt-----aaa-acactgtgttaga Bonobo tcatttcta----------------caaaaatgctcactc--t--ttt-----aaa-acactgtgttaga Gorilla tcatttcta----------------caaaaatgctcacac--t--ttt-----aaa-gcactgtgttaga Rhesus tcatttctg----------------caaaaatgatcactc--t--ctt------aa-gcactgtgttaga Marmoset tgatttcta----------------caaaaatgatcactc--t--ctt-----aaa-gcact-tgtcaga Tarsier tcatttcta----------------caagat-----------------------ga-ttactgtgtcgga Bushbaby tcattt-tg----------------tagaaa--------------------------------tgtcaga Tree shrew taattt----------------------------ttactc--c--ttc-----aaa-gcactgcatcaga Malayan flying lemur tcatttcta----------------caaaac-gatcacac--c--ttc-----tga-gcactgtgtcaga Pig ttctttccataaatgatcatttctacaaaat-gactgccc--c--ttt-----gaa-gcactgtgttaga Dolphin ttagttctaccaatgatcgtttctacaaaat-gattgccc--c--ttt-----gaa-gcactgtatcaga Cow ttatttctaccaatgatctttcct-caaaat-gattgccctgc--ttt-----gaa-gctcagtatcaga Sheep ttatttctacaaatgatctttcct-caaaat-gattgccctgc--ttt-----gaa-gctcagtatcaga Horse ttat-------------------------at-gatcaccc--c--gtg-----gaa-gcactgtgtcaga Chinese pangolin ttatttctataaatgaacagttctacaaaat-gactgccc--c--taa-----gaa-gcac--ggtcaga Dog ttatttctagaagtgatcatttctacaaaat-gattgccc--t--ttca----aaa-gcactgtgtcaga Hawaiian monk seal ttatttctataagtgatcaattttac-aaat-gatcattt--c--tacaaatcaaa-gcactgtgtcaga Hedgehog ttagagtacaaaataatgatttctacaaaat-catgacca--ccatcc-----tgt-g------------ Shrew ttattttttcaaatgatcctttctacaaaag-gattttca--t--ttc-----tga-g------------ Elephant --ctttgta----------------taaaat-gatcatcc--t--gtt-----gaa-gcaccgtgtcaga Tenrec --ctttcta----------------cacagt-ggccatct--t--ttc-----tga-gcacagtgtcaga Zebrafish ====================================================================== X. tropicalis ====================================================================== Opossum ====================================================================== Chicken ====================================================================== Mouse ggg-------------aag---------------tg-tgt-aaaaccaag-tataaacggcactgtc-ac Rat tgg-------------gag---------------tg-tat-aaaatcaag-tataaaagacactgtc-aa GCF_003668045 tag-------------aag---------------tg-ttt-aaaatcaag-tttaaacgacaccctg-aa Beaver -ag-------------aag---------------tg-ttt-aaaatcaagatatagatg-cgttgtc-aa Squirrel tgg-------------aag---------------tg-ttt-aaaattaag-ctatggtggctttgtc-aa Guinea pig tga-------------aag---------------tg-ttt-aaaatcaaa-tc---atagttttgtc-aa Rabbit tgg-------------aag---------------tg-ttt-aaaaccaagttttaagtgccttggtc-ac Pika tggaaggaagtgcttaaag---------------tg-ttt-aaaaccagattataagggacttcctc-ac Human tgg-------------aag---------------tg-ttt-aaaatcaag-ttacaatggctttgcc-aa Chimp tga-------------aag---------------tg-ttt-aaaattaag-ttacaatggctttgcc-aa Bonobo tgg-------------aag---------------tg-ttt-aaaattaag-ttacaatggctttgcc-aa Gorilla tgg-------------aag---------------tg-ttt-aaaatcaag-ttacaatggctttgcc-aa Rhesus tgg-------------acg---------------tg-ttt-aaaatcaag-ttacaatggctttgcc-aa Marmoset tgg-------------aag---------------tg-ttt-aaaatcaag-ttacaatggctttgtc-aa Tarsier tgg-------------aagctagctatagtgacttg-tta-aaaattaag-ctatagtggctttgtc-aa Bushbaby tgg-------------aag---------------tg-ttt-aaaatcaag-ttacagtggctttgtc-aa Tree shrew tgg-------------aag---------------tg-ttt--aaatccag-ttataatggctttatc-aa Malayan flying lemur tgg-------------aag---------------tg-tttaaaaatcaag-ttatagtggctttgtc-aa Pig tgg-------------aag---------------ta-ttt-aaaatcaag-ttgtactagctttgtc-aa Dolphin tgg-------------aag---------------ta-ttt-aaaatcaag-ttgtagtagttttgtc-aa Cow tgg-------------aag---------------tgtttt-aagatc--g-tagtagtagctttgtc-aa Sheep tgg-------------aag---------------tg-ttt-aagatc--g-tagtagtagctttgtc-aa Horse tgc-------------aaa---------------tg-ttt-aaaatcaag-ttgtagtggctttgtc-aa Chinese pangolin tgg-------------aag---------------ta-ttt-ataatcaag-ttgtagaggctttgta-aa Dog tgg-------------aag---------------ta-ttt-aaactcaag-ttgtggtggctttgtc-aa Hawaiian monk seal tgg-------------aag---------------ta-ttt-aaaatcagg-ttgtagtggctttgtcaaa Hedgehog ----------------aag---------------tg-cat-ccaatcagg-ttgtagcagcgttgtc-aa Shrew ----------------ga-------------------------aatcaag-ttatagtggctttgtc-aa Elephant tgg-------------aag---------------ta-ttt-aaaatcaag-ttccagtggctttgtc-aa Tenrec tgg-------------aga---------------ta-ttt--aaatcagg-ttgccgaggcttggtc-aa Zebrafish ====================================================================== X. tropicalis ====================================================================== Opossum ====================================================================== Chicken ====================================================================== Mouse ac-----------ttctatgcgcggagtcca-----gaag-cagaactagat-gaa----tgtag----- Rat ac-----------ttctatacatggggccca-----gaag-cagaattagat-gca----tgcaa----- GCF_003668045 ac------------tctatacacaggaccaa-----ggag-caaaa-tatat-aca----tgtag----- Beaver ac-----------ttccacccgtacaaccca-----gaaa-caaaaatatatcgtt----ttcag----- Squirrel ac----gtcactcttcaatccctagctccaaaataggaaa-caaaaagacatcact----tgtgg----- Guinea pig at----gtggtccttctgcccataggacctg-----gaga-taataatatattgtg----tctag----- Rabbit ac----ttcactccttcatccgtaggactca-----aaga-cgaaaatatattg---------------- Pika at----ttcactccttcatctatagtaccca-----aaga-tgcgaatacatt----------------- Human ac------cactcctccacccataggaccca-----aaga-caaacatacattgtt----tgtag----- Chimp ac------cactcctccacccataggaccca-----aaga-caaacatacattgtt----tgtag----- Bonobo ac------cactcctccacccataggaccca-----aaga-caaacatacattgtt----tgtag----- Gorilla ac------cactcctccacccataggaccca-----aaga-caaacatacattgtt----tgtag----- Rhesus ac----ttcgctcctccatccataggaccca-----aaga-caaacatacattgtt----tgtag----- Marmoset ac----ttccatcctccacccataggaccca-----aaga-caaaaatacattgtt----tgtag----- Tarsier ac----ttcgctcctccacccatgggaccct-----aaaa-tgaaaatatattgct----tgtag----- Bushbaby ac----tttgctcctccacccaaagtaccca-----aaga-taaaaacatcatcttcaaatgtct----- Tree shrew ac------cactcctccacccgtagacccca-----tgga-cacaaatgcatttct----tggag----- Malayan flying lemur ac----tttgttcctccagtcattggaccca-----aaga-taaaaatacattgtt----cataa----- Pig ac----ttcggttctc-acccacaggttcca-----aaga-caa------actgct----catag----- Dolphin acttcattcagtcctctacccatgggtccca-----aaga-cca------actgct----catag----- Cow ac----ttcagtcgtccacccatgggtccca-----aaga-caa------actgct----cctag----- Sheep ac----ttccgtcctccacccatgggtccca-----aaga-caa------actgct----cctag----- Horse at----ttaggtcctacacccataggtccca-----aaga-caaaaacacattgct----tccag----- Chinese pangolin ac----attggtcctccacccataggtccca-----aaga-caaaaatacattgct----caaac----- Dog ac----ttcagtcctccacccataggtccca-----aaga-caaaaacacattgct----catag----- Hawaiian monk seal ac----ttcagtcctccacctataggttcca-----aaga-caaaaacatattgct----catag----- Hedgehog at----tttgttccttcatccctagagccca-----caga-gaaaaacaaattgct----gatag----- Shrew a------ttgcttctccacctatagaaccca-----caaattcaaaacaaactgct----gactg----- Elephant ac----ttcgctcctttacccacaggtacca-----ggca-caaaaatacattcct----tgtaatcttc Tenrec ac----ttgagtcctccatccataggtgcca-----aaca-caaaaatacattcct----ggtag----- Zebrafish ====================================================================== X. tropicalis ====================================================================== Opossum ====================================================================== Chicken ====================================================================== Mouse --------tc------------ttcaaa------------------------------------------ Rat --------tc------------ttcaaa------------------------------------------ GCF_003668045 --------tc------------ttcaaa------------------------------------------ Beaver --------tc------------ttcaaa------------------------------------------ Squirrel --------tc------------t--aag------------------------------------------ Guinea pig --------tc------------ttcaaa------------------------------------------ Rabbit ---------c------------ttcaaa------------------------------------------ Pika ---------------------------------------------------------------------- Human --------cc------------ttcaca------------------------------------------ Chimp --------cc------------ttcaca------------------------------------------ Bonobo --------cc------------ttcaca------------------------------------------ Gorilla --------cc------------ttcaca------------------------------------------ Rhesus --------cc------------ttcaca------------------------------------------ Marmoset --------cc------------ttcacc------------------------------------------ Tarsier --------cc------------ttcaaa------------------------------------------ Bushbaby --------cctctttgaaattattcaaa------------------------------------------ Tree shrew --------cc------------ttcaaa------------------------------------------ Malayan flying lemur --------tc------------ttcaaa------------------------------------------ Pig --------tc------------ttcaaa------------------------------------------ Dolphin --------tt------------ttcaaa------------------------------------------ Cow --------tt------------ttcaaa------------------------------------------ Sheep --------tt------------ttcaaa------------------------------------------ Horse --------tc------------tttaag------------------------------------------ Chinese pangolin --------tc------------tttaaa------------------------------------------ Dog --------tc------------ttcaaa------------------------------------------ Hawaiian monk seal --------tc------------ttcaaa------------------------------------------ Hedgehog --------tt------------ttcata------------------------------------------ Shrew --------tt------------ttcaga------------------------------------------ Elephant aaataccttc------------tttgaaattacacttggtcacaaaaaagatgccaatgattcaaaactt Tenrec --------cc------------tttaaaattacacctgatc----------------------------- Zebrafish ====================================================================== X. tropicalis ====================================================================== Opossum ====================================================================== Chicken ====================================================================== Mouse -----------------------------------------------------tatct--ttt---tt-- Rat -----------------------------------------------------tatct--ttt---ttc- GCF_003668045 -----------------------------------------------------tactt--ttc---tt-- Beaver -----------------------------------------------------tattt--cct---cttt Squirrel -----------------------------------------------------tatct--cct---tt-- Guinea pig -----------------------------------------------------tattt--cct---tttt Rabbit -----------------------------------------------------tacct--cct---cttt Pika ---------------------------------------------------------------------- Human -----------------------------------------------------tatct--ctt---t--- Chimp -----------------------------------------------------tatct--ctt---t--- Bonobo -----------------------------------------------------tatct--ctt---t--- Gorilla -----------------------------------------------------tatct--ctt---t--- Rhesus -----------------------------------------------------tatct--ctt---t--- Marmoset -----------------------------------------------------aatct--ctt---t--- Tarsier -----------------------------------------------------tagct--cct---tttg Bushbaby -----------------------------------------------------tatct--cctctat--- Tree shrew -----------------------------------------------------tatcc--cctcttt--- Malayan flying lemur -----------------------------------------------------tatct--cttcttt--- Pig -----------------------------------------------------tatcc--tct---cttt Dolphin -----------------------------------------------------tatct--tct---cttt Cow -----------------------------------------------------tatct--tct---cttt Sheep -----------------------------------------------------tatct--ttt---cttt Horse -----------------------------------------------------tatct--tcc---tttt Chinese pangolin -----------------------------------------------------tatct--tct---cttt Dog -----------------------------------------------------tatct--ttt---cttt Hawaiian monk seal -----------------------------------------------------tatct--ttt---cttt Hedgehog ------------------------------------------------------acctctctt---ctct Shrew -----------------------------------------------------tatcttattt---ttta Elephant cgctcctttacccacaggtaccaggcacaaaaatacattccttgtagtcttcaaatac--ctt---cttt Tenrec -------------------------------------tctctctctctctctctctct--ctc---tctc Zebrafish ====================================================================== X. tropicalis ====================================================================== Opossum ====================================================================== Chicken ====================================================================== Mouse ----------------------------------------------ccaatatg-----cataactg-ta Rat ---------------------------------------------ccccatatg-----ca-aactg-ta GCF_003668045 -----------------------------------------------cagtatg-----catgactg-ta Beaver aa----a-----attatacttggtcac-ttaaagtt-gccagtgattcaacatg-----cacaacta-ta Squirrel aa----a-----attttatttggtcac-ttaaagat-gccactaattcaatatg-----cacaacaa-tc Guinea pig aa----a-----attacacttggtcac-ttaaagaa-g--------tcagtg-----------------a Rabbit ga----aattacact----ttagtcac-ttaaagat-gccaatgatttaatatg-----gacaactc-tg Pika -------------------------------cgaat-gccagtgatcccatatg-----gactattcggg Human ga----a-----actatacctggtcac-tgaaaaat-gccaataattcaatatt-----ctcaaccc-ca Chimp ga----a-----actatacctggtcac-tgaaaaac-gccaataattcaatatt-----ctcaaccc-ca Bonobo ga----a-----actatacctggtcac-tgaaaaac-gccaataattcaatatt-----ctcaaccc-ca Gorilla ga----a-----actatacctggtcac-tgaaaaac-gccaataattcaatatt-----ctcaaccc-ca Rhesus ga----a-----actacacctggacac-cgaaaaat-gccaataattcaatatg-----cacaaccc-ta Marmoset gaaacta-----actatacctggtcac-tgaaaaat-ggcaatgattcaatatg-----cacaactc-ca Tarsier ga----a-----attatacctgggcac-tgaaaaat-gtcagtgactcagtatg-----cacaaacc-ta Bushbaby ga----a-----attactcctggccac-tgaaaaac-accagtgattcaatatg-----cacaaccc-ca Tree shrew aa----a-----attacact-ggtttc-tttaaaat-accaatgattcaatatg-----cacaaccc-tg Malayan flying lemur aa----a-----attacacc--ttcac-ttagagatggcaaaggattcaatatgcacaacacaacca-ta Pig ta----a-----aatgtacttgctcac-ttaaagat-gccaatgattcagtatg-----catacttt-ta Dolphin aa----a-----attctacttgctcac-ttaaagat-gccagtgattcaatatg-----tacacctc-ta Cow aa----a-----attgtacttgctcac-ttaaagat-gccgatgattcaacatg-----cacacctc-tt Sheep aa----a-----attgtacttgctcac-ttaaaggt-gccgatgatttaacatg-----cacacctc-tt Horse aa----a-----atggcactttgtcac-ttaaagac-gccagtgattcaatatg-----cacaaccc-ta Chinese pangolin aa----a-----attgcacttggtcac-ttaaagat-gccagtgattccatatg-----cacactcc-ta Dog aa----a-----actgcacttagtcat-ttaaggat-ggcagtgattcaagagg-----cacacttc-ta Hawaiian monk seal aa----a-----actgcactaagtcat-ttaaagat-ggcagtgattcaatagg-----cacacttc-ta Hedgehog aa----a-----actgtacttgattac-taagagat-gcaagcaattcactata-----cacaaccc-ta Shrew aa----a-----attgcacttggttat-tta-agat-gacagtgatttgatatg-----cacaacta-ta Elephant aa----a-----attacacttggtcacaaaaaagat-gccaatgattcaatatc-----cacaaccc-tc Tenrec ac----a-----cacacac---------acacacac-cccaatgatccaatatg-----cacaaact-tc Zebrafish ====================================================================== X. tropicalis ====================================================================== Opossum ====================================================================== Chicken ====================================================================== Mouse gatattattattattattt---------------------ggtctgtatttccttt--aagaacagagag Rat gatgttatgaaaatctttt-------aggg--------ggggtctgtatctccttt--aagaacagaaag GCF_003668045 gatactgtgacaatcaccttact-ctagaagt-t-tttgttgtttgtatctccttt--gagaacagaaaa Beaver ggtattgtggtaattaccttaca-ctatataa-t-tt---tctttgtgcttccttc--aagaacagaaag Squirrel gatattgtggtaatcaccttaca-ctatataa-t-tt---tctttgcatctccatc--aagaaataaaag Guinea pig tttggtatgtacaacatactgta-ctatgtag-g-tt---tccttacatctccagc--aagaaaagaaaa Rabbit tgtacagtagtaatcaccttata-acacataa-t-tt---tctttgcttttctatc--aagaacagagag Pika tgcgctgtagccagtaccttata-aggcataa-t-tt---gcttcacttgtctgtc--aagaatagaggg Human ggtattatagtaattactttaca-ccatacaa-t-tt---tctttgcatctccacc--aagaacagaaag Chimp ggtattatagtaattactttaca-ccatacaa-t-tt---tctttgcatctccacc--aagaacagaaag Bonobo ggtattatagtaattactttaca-ccatacaa-t-tt---tctttgcatctccacc--aagaacagaaag Gorilla ggtattatagtaattactttaca-ccatacaa-t-tt---tctttgcatctccacc--aagaacagaaag Rhesus ggtattatagtaattattttaca-ccatacaatt-tt---tctttgcatctccacc--aagaacagaaag Marmoset agtatcatagtaa-----ttaca-ccatacaa-t-tt---tctttgcatctccaac--aagaacagaaag Tarsier cgtattctagtaatctgtgtaca-ccatgcaa-t-tt---tctttgcatcttcatc--aagttcaggaag Bushbaby agtactgtggtaatcacttgaca-ccatataa-t-tt---tctttccatcttcatt--aagaagagaaag Tree shrew tatattgcggtaatcaccccaca-ccatataa-t-tt---tctttgtgtctttatg--aagaacagaaag Malayan flying lemur ggtgttgtggtaatcaccttaca-ccacagaa-t-tt---tctttgcatctctgtc--aagaacagaaag Pig ggta--------atcagtttaca-caatataa-t-tg---tctttgcatctctgct--aagaacataaag Dolphin ggtatcgtggtaatcagtttacgcccgtataa-t-tt---tctttgcatctctatt--aaaaacataaag Cow ggtattgtggtaatcggtttaca-tcatataa-t-tt---tctttgcgtctctata--aagagaataaag Sheep ggtattgtggtgatcggtttaca-tcatataa-t-tt---tctttgcggctctata--aagagcataaag Horse agtattgtggtaatcactttaca-ccatataa-t-tt---tcttcgcatctctgtt--aagaacataaag Chinese pangolin ggtattgtggtaatcagtttaca-ccctataa-t-tt---tctttgcaactctatt--aagaacataaag Dog ggtattgtggtcatcagtttaca-acatataa-t-tt---tctttatatctctattaaaaaaacataaag Hawaiian monk seal ggtattgtggtaatcagtttaca-gcatataa-t-tc---tctttgtatctctatt--aagaacataaag Hedgehog ggcattgtggtaagcagtttaca-ctgtataa-c-tg---ccttttcatttgtgtt--aggaatggaaag Shrew tgtattgtggtaatcgatatgca-tcataaaa-agtt---tctttgcatct-tatt--aaggacaataag Elephant agtattgtaataatcagtttaca-ccatataa-t-tt---tctttgcatctccatt--aagaacagaaag Tenrec agcattgtggtaattatttcaca-ccatataa-t-tt---tctttgcatctcc-tt--aagaactgaaag Zebrafish ====================================================================== X. tropicalis ====================================================================== Opossum ====================================================================== Chicken ====================================================================== Mouse tttggcagatggctt-ggct----ttgct-cttttt-tttttaaatgttaaattctactttcattttctt Rat attggtaga-----t-ggtt----ttgct-cccttt-ctt---aacgttaaattctactttcattttctt GCF_003668045 ataggcaca-----t-ggtt----tcatc-cctttt-ctt---aa-attgaattttactttca------- Beaver ggtaagtta-----t-gact----ttact-cctttc-ctt---aacactgaattctactttcattttctt Squirrel ggtaactgg-----t-ggct----tcccc-cctttt-ctt---aatacttgattctactttcattt---- Guinea pig ggtaac--------t-gttt----taact-cctttt-ctt---aacacttaattttacttccattttctt Rabbit gataaccta-----t-ggct----ttctt-cccttc-ctt---aacatttaattctactttcgttttgtt Pika gataactga-----t-ggct----ttgtt-ccattt-c----------ttatttctactttcgttttctt Human aataactga-----t-ggca----ttaca-c------ctt---aacacttaattttactttcattttctt Chimp aataactga-----t-ggca----ttaca-c------ctt---aacacctaattttactttcattttctt Bonobo aataactga-----t-ggca----ttaca-c------ctt---aacacctaattttactttcattttctt Gorilla aataactga-----t-ggca----ttaca-c------ctt---aacacttaattttactttcattttctt Rhesus aataacaga-----a-agaa----aaaaa-t--------------aacttaattttactttcattttctt Marmoset aataactga-----t-gaca----ttaca-c------ctt---aacacttaattctactttcattttctt Tarsier aataactca-----t-ggta----tcaca-c------tgt---aacacttaattctactttcattttctt Bushbaby ggcaactga-----t-ttct----ttact-cctttt-ctt---aacacttcattctactttcattttctt Tree shrew ggtaactga-----tgggtt----ttact-cctttt-ctt---aatgcttaattccactttcattttctt Malayan flying lemur gataagtga-----t-ggct----ttgct-cctttt-ctt---aacacttaattctactttcattttctt Pig gagagctga-----t-ggct----ttact-tcttttccaa---aatacgtaattctactatcattttctt Dolphin gatagctga-----c-ggct----ttact-tcttttccaa---aatactta----tactttaattatcct Cow gatagttga-----c-agct----ttagc-tcttttccaa---aacacttaattccactttaattttcct Sheep catagttga-----c-agct----ttacc-tcttttccaa---aacacttaattcctctttaattttcct Horse gataactga-----t-gattttacttact-cctgtttcaa---aacacttaatcctactttcattttctt Chinese pangolin g-taact-a-----t-ggct----ttaca-ccttttttag---cacacttaattctactttcattttctt Dog gataactga-----c-agct----ttact-cctttttcaa---aacccttaattctaccttcattttctt Hawaiian monk seal gataaatga-----c-agcg----ttactccctttttaaa---aacacttaattctgccttcatttcctt Hedgehog aataacgga-----c-gatt----ttact-cctttttcaa---aacacttgattctac-----tcctctt Shrew gaaa----a-----t-tatt----ttact-cctttttcaa---aacaattaatttga------------- Elephant gataactga-----t-ggct----tgact-cctttt-tta---aacacttaatagtattttctgtttctt Tenrec ttcaactaa-----t-ggc-------------------ca---aacacttcactctacttgcactggttt Zebrafish ====================================================================== X. tropicalis ====================================================================== Opossum ====================================================================== Chicken ====================================================================== Mouse aaca-ttttatttca Rat taca-ctttatttca GCF_003668045 --------------- Beaver aacc-tcttatttca Squirrel -------ttatttca Guinea pig aaca-ttttatttaa Rabbit aacc-ttgtattcaa Pika aacc-tttttttc-- Human aacc-t---atttca Chimp aacc-t---atttca Bonobo aacc-t---atttca Gorilla aacc-t---atttca Rhesus aacc-t---atttca Marmoset aacc-g---atttca Tarsier aagc-gttaatttca Bushbaby aacc-ttttatttca Tree shrew aaca-ttttatttca Malayan flying lemur aacc-ttttattcca Pig accc-ttttattgca Dolphin aacc-ttttgtttca Cow aacc-ttttgtttca Sheep aacc-ttttgtttca Horse aatc-gtctgtttca Chinese pangolin aacctttttatttca Dog aac--ttttatttca Hawaiian monk seal aact-ttttatttca Hedgehog agcg-tttca----- Shrew --------------- Elephant aacc-ttttatttct Tenrec gcac-ttttattttc Zebrafish =============== X. tropicalis =============== Opossum =============== Chicken =============== Inserts between block 40 and 41 in window B D Shrew 63bp Alignment block 41 of 287 in window, 56745986 - 56746020, 35 bps B D Mouse ttttttctttctga------------------------------------tgtttta----aaaaaa-a- B D Rat ttttctctatctga------------------------------------tgcctaa----aaaaaaga- GCF_003668045 ---tctctttctga------------------------------------tacttaa----aaac---a- Beaver ttttttctgcctta------------------------------------tacttga----aaaag--c- B D Squirrel ttttctctt----a------------------------------------tacttaa----aaaaa--a- B D Guinea pig ttttctcttccttg------------------------------------tccttaa----aaaaaa-a- B D Rabbit ttc-----------------------------------------------tttttaa----a------a- B D Pika ---------------------------------------------------ccttta----a------a- B D Human ttttctctttcttg----------------------------tatatacatttttta----aa-----c- B D Chimp ttttctctttcttg----------------------------tatatatatatttta----aa-----c- B D Bonobo ttttctctttcttg----------------------------tatatatatttttta----aa-----c- B D Gorilla ttttctctttcttg----------------------------tatatatatatttta----aa-----c- B D Rhesus ttttctctttcttg----------------------------tatatacatatttga----aa-----ct B D Marmoset ttttctctttcttgtatatatatatatacaaatatatatatatatatatatatttaa----aa-----c- B D Tarsier ttttctctttttcg----------------------------tatgcat-ttttaaa----ag-----c- B D Bushbaby ttttctctgtcttg----------------------------tatatg--tttttaa----aa-----c- B D Tree shrew catt---tttcttg----------------------------tat-----taaaaaaaaagaa-----t- B D Malayan flying lemur ctttctctttcttg----------------------------tgt-----tttttaa----aa-----c- B D Pig ---------------------------------------------------------------------- B D Dolphin ---------------------------------------------------------------------- B D Cow ---------------------------------------------------------------------- B D Sheep ---------------------------------------------------------------------- B D Horse ---------------------------------------------------------------------- B D Chinese pangolin ---------------------------------------------------------------------- B D Dog ---------------------------------------------------------------------- B D Hawaiian monk seal ---------------------------------------------------------------------- B D Hedgehog ---------------------------------------------------------------------- B D Elephant ---------------------------------------------------------------------t B D Tenrec ---------------------------------------------------------------------t B D Zebrafish ====================================================================== B D X. tropicalis ====================================================================== B D Opossum ====================================================================== B D Chicken ====================================================================== B D Shrew ====================================================================== Mouse ----------ccattct----------------------------------- Rat ----------acattct----------------------------------- GCF_003668045 ----------cctttct----------------------------------- Beaver ----------cccatct----------------------------------- Squirrel ----------acactgt----------------------------------- Guinea pig ----------catctcc----------------------------------- Rabbit ----------accctct----------------------------------- Pika ----------tccctct----------------------------------- Human ----------tctttca----------------------------------- Chimp ----------tctttca----------------------------------- Bonobo ----------tctttca----------------------------------- Gorilla ----------tctttca----------------------------------- Rhesus ----------tttttca----------------------------------- Marmoset ----------tctttta----------------------------------- Tarsier ----------cctgtct----------------------------------- Bushbaby ----------tctt-------------------------------------- Tree shrew ----------gacctct----------------------------------- Malayan flying lemur ----------cctttct----------------------------------- Pig -------------ttga----------------------------------- Dolphin -------------ttga----------------------------------- Cow -------------ttga----------------------------------- Sheep -------------ttga----------------------------------- Horse -------------ttaa----------------------------------- Chinese pangolin -------------ctaa----------------------------------- Dog -------------ttaa----------------------------------- Hawaiian monk seal -------------ttaa----------------------------------- Hedgehog ------------cttaa----------------------------------- Elephant gta----------ttaaaaaaaaaaaaa--------------------ccct Tenrec atatgtgtcggatttgaaaacagcagaagcagtagcaacaaaacccttctct Zebrafish ==================================================== X. tropicalis ==================================================== Opossum ==================================================== Chicken ==================================================== Shrew ==================================================== Inserts between block 41 and 42 in window B D Pika 4bp B D Pig 10bp B D Dolphin 10bp B D Cow 10bp B D Sheep 10bp B D Horse 24bp B D Chinese pangolin 13bp B D Dog 20bp B D Hawaiian monk seal 20bp B D Hedgehog 7bp Alignment block 42 of 287 in window, 56746021 - 56746056, 36 bps B D Mouse t--tata-attctacc----attaa-----c----aatta-cggtat-------ttccag B D Rat t--taca-attccacc----gttga-----c----aatcg-cggtat-------ttccag GCF_003668045 t--tttt-atttattt----attag--ttct----agtca-gggaacaagcttgtttcac Beaver c--tatg-actctgcc----acttgactggc----actta-tggtat-------ttacaa B D Squirrel c--tata-tttctgcc----actgg-----c----actaa-tgctat-------ttacag B D Guinea pig a--taag-accctgcc----attgc-----c----gctca-tggtat-------tcacag B D Rabbit a--taaa-ccccattcct--actga-----t----acttg-tggcat-------tcacag B D Pika g--taaa-tcccactcctgaactg------t----acttg-tggcat-------tcagag B D Human g--gaaa-accctgcc----actaa-----c----accca-tggcat-------gtatag B D Chimp g--gaaa-accctgcc----actaa-----c----accca-tggcat-------gtatag B D Bonobo g--gaaa-accctgcc----actaa-----c----accca-tggcat-------gtatag B D Gorilla g--gaaa-accctgcc----actaa-----c----accca-tggcat-------atatag B D Rhesus g--gaaa-accctgcc----actaa-----c----accca-tggcat-------gtatag B D Marmoset g--gata-accctgcc----actga-----c----accca-tgacat-------gtagag B D Tarsier c--tata-accctgcc----actga-----c----accca-tggcat-------gaataa B D Bushbaby ---aaca-accctgcc----agt----------------a-tggaat-------acatag B D Tree shrew c--tcta-accctgcc----actgc-----t----actgg-aggcgt-------ttatag B D Malayan flying lemur t--tata-atcctgct----attga-----c----attcg-tggcat-------ttatag B D Pig ctatata-acctcatc----actaa-----c----actgg-tggcat-------ttacag B D Dolphin c--tata-accttacc----tctga-----c----actgg-tggcat-------ttacag B D Cow c--tatg-accttacc----tctga-----c----actgg-tggcac-------ttacag B D Sheep c--tatg-accttacc----tctga-----c----actgg-tggcac-------ttacag B D Horse c--tcta-accttacc----actga-----c----atagg-tggcat-------ttacag B D Chinese pangolin c--tctatacctcact----accaa-----c----actgg-aggtat-------ttacag B D Dog c--taca-accttgcc----actga-----c----actggttggcat-------ttactg B D Hawaiian monk seal t--tata-accttacc----actga-----c----gctgg-tggcat-------ttacag B D Hedgehog t--cata-acttcaca----agtga-----tactcattca-cggcat-------ttt--- B D Shrew t--tagc-cttttacc----catga-----t----cttta-tggcat-------tct-ac B D Elephant c--tgta-tccctgcc----actgc-----c----atttg-tggggt-------ttag-- B D Tenrec c--ttta-accctgcc----actgc-----t----gttgt-tgcggg-------gcag-- B D Zebrafish ============================================================ B D X. tropicalis ============================================================ B D Opossum ============================================================ B D Chicken ============================================================ Inserts between block 42 and 43 in window B D Guinea pig 43bp B D Rabbit 12bp B D Pika 12bp B D Pig 1bp B D Dolphin 1bp B D Cow 1bp B D Sheep 1bp B D Horse 1bp B D Chinese pangolin 1bp B D Dog 1bp B D Hawaiian monk seal 1bp B D Hedgehog 1bp B D Shrew 1bp Alignment block 43 of 287 in window, 56746057 - 56746067, 11 bps B D Mouse aatta---------------ctat----tt B D Rat acttag--------------ttat----tt GCF_003668045 atgtaa--------------gtcc----ct Beaver tagcag--------------ttacaggatt B D Squirrel tgtcagcgacaga-----atttat----tt B D Rabbit ------------attttttttttt----tt B D Pika ------------g-----attgtt----tc B D Human -----------------tggtaat----t- B D Chimp -----------------tggtaat----t- B D Bonobo -----------------tggtaat----t- B D Gorilla -----------------tggtaat----t- B D Rhesus -----------------tggcaat----t- B D Marmoset -----------------tggtaat----t- B D Tarsier -----------------tggtcac----t- B D Bushbaby -----------------tgttaat----t- B D Tree shrew -----------------tggtaat----t- B D Malayan flying lemur -----------------tggtaat----t- B D Pig ------------------ggtaat----t- B D Dolphin ------------------gataac----t- B D Cow ------------------ggtaac----t- B D Sheep ------------------ggtaat----t- B D Horse ------------------ggtaac----t- B D Chinese pangolin ------------------ggtaac----t- B D Dog ------------------ggtaac----t- B D Hawaiian monk seal ------------------ggtaat----t- B D Hedgehog ------------------gggtgt------ B D Shrew ------------------ggtaac------ B D Elephant ---------------agtggt--------- B D Tenrec ---------------agtggt--------- B D Guinea pig ============================== B D Zebrafish ============================== B D X. tropicalis ============================== B D Opossum ============================== B D Chicken ============================== Inserts between block 43 and 44 in window B D Human 13bp B D Chimp 13bp B D Bonobo 13bp B D Gorilla 13bp B D Rhesus 14bp B D Marmoset 10bp B D Tarsier 13bp B D Bushbaby 14bp B D Tree shrew 41bp B D Malayan flying lemur 14bp B D Pig 2bp B D Dolphin 2bp B D Cow 2bp B D Sheep 2bp B D Horse 2bp B D Chinese pangolin 2bp B D Dog 2bp B D Hawaiian monk seal 2bp Alignment block 44 of 287 in window, 56746068 - 56746087, 20 bps B D Mouse aaaaaca------------------atatgcatataa---c B D Rat aaaaaga------------------ataggcatatac---c GCF_003668045 aaaaacacctttctttagctgacccattaacattcac---g Beaver aaaaaaa---------------ataatgtgcacataa---c B D Squirrel ctgagtc------------------atacacatataa---c B D Rabbit ttgagtc------------------agaggcacaaaa---c B D Pika aaaagtc------------------agaggtgcataa---c B D Human ttaagtc------------------atatgcacatat---c B D Chimp ttaagtc------------------atatgcacatat---c B D Bonobo ttaagtc------------------atatgtacatat---c B D Gorilla ttaagtc------------------atatgcacatat---c B D Rhesus ttaagtc------------------atatgcacatat---c B D Marmoset ---agtc------------------atatgcacttat---c B D Tarsier tt--gtc------------------acgtgcacatatcagc B D Bushbaby ttgaatc------------------atatgtaggtga---c B D Malayan flying lemur ttgagtc------------------atacgcatattt---a B D Pig ----------------------------agtatttat---t B D Dolphin ----------------------------agtatttat---t B D Cow ----------------------------actatttgt---t B D Sheep ----------------------------actgtttgt---t B D Horse ----------------------------agtatttgt---t B D Chinese pangolin ----------------------------catatttat---t B D Dog ----------------------------agtctttat---t B D Hawaiian monk seal ----------------------------agtatttac---t B D Hedgehog ------------------------------tacttat---t B D Shrew ------------------------------tatttat---c B D Elephant ------------------aattgtaaaatttattt------ B D Tenrec ------------------ggcggtgaaatgcattt------ B D Guinea pig ========================================= B D Tree shrew ========================================= B D Zebrafish ========================================= B D X. tropicalis ========================================= B D Opossum ========================================= B D Chicken ========================================= Inserts between block 44 and 45 in window B D Pig 29bp B D Dolphin 998bp B D Cow 1bp B D Sheep 2bp B D Horse 1bp B D Chinese pangolin 1bp B D Dog 1bp B D Hawaiian monk seal 1bp B D Hedgehog 1bp B D Shrew 1bp Alignment block 45 of 287 in window, 56746088 - 56746103, 16 bps B D Mouse tctaaattatatgcat------ B D Rat ctta------------------ GCF_003668045 gtttaattaaaaatat------ Beaver cttc------------------ B D Squirrel ctca------------------ B D Rabbit caca------------------ B D Pika cata------------------ B D Human a--------------------- B D Chimp a--------------------- B D Bonobo a--------------------- B D Gorilla a--------------------- B D Rhesus a--------------------- B D Marmoset a---------------------