Multiz Alignments of 60 Vertebrates
 

Capitalize exons based on show bases
Place cursor over species for alignment detail. Click on 'B' to link to browser for aligned species, click on 'D' to get DNA for aligned species.
Alignment block 1 of 386 in window, 56745427 - 56746542, 1116 bps 
B D             Mouse  aaagtacaggatatccatgatacaccc-acagacctaaagaagttaaataagaaggaaggttcaagcgag
B D               Rat  aaagtacaggatacacattatacaccccacacacctaaagaa-------aaacaagaaggttcaagcgag
B D            Rabbit  ======================================================================
B D        Guinea pig  ======================================================================
B D          Bushbaby  ======================================================================
B D               Cow  ======================================================================
B D          Elephant  ======================================================================
B D           Manatee  ======================================================================
B D          Squirrel  ======================================================================
B D            Rhesus  ======================================================================
B D         Orangutan  ======================================================================
B D   Squirrel monkey  ======================================================================
B D               Pig  ======================================================================
B D             Horse  ======================================================================
B D             Panda  ======================================================================
B D               Dog  ======================================================================
B D          Marmoset  ======================================================================
B D            Gibbon  ======================================================================
B D           Gorilla  ======================================================================
B D             Chimp  ======================================================================
B D    Naked mole-rat  ======================================================================
B D             Human  ----------------------------------------------------------------------
B D           Tarsier  ======================================================================
B D            Tenrec  ======================================================================
B D              Pika  ======================================================================
B D            Alpaca  ======================================================================
B D        Tree shrew  ======================================================================
B D             Sheep  ======================================================================
B D            Medaka  ======================================================================
B D     X. tropicalis  ======================================================================
B D          Platypus  ======================================================================
B D            Turkey  ======================================================================
B D        Coelacanth  ======================================================================
B D   Tasmanian devil  ======================================================================
B D           Opossum  ======================================================================
B D            Lizard  ======================================================================
B D        Budgerigar  ======================================================================
B D       Zebra finch  ======================================================================
B D           Chicken  ======================================================================
B D    Painted turtle  ======================================================================
B D             Shrew  ======================================================================
  D  Little brown bat  ======================================================================
B D            Baboon  ======================================================================
B D             Sloth  ======================================================================
B D         Armadillo  ======================================================================
B D               Cat  ======================================================================
B D       Mouse lemur  ======================================================================
B D          Hedgehog  ======================================================================
B D      Kangaroo rat  ======================================================================
B D        Rock hyrax  ======================================================================
B D           Megabat  ======================================================================
B D           Dolphin  ======================================================================

                Mouse  ggtgcttaaatcttaattggaagagggaataaaagaatctttggaggtggatggagggaggaaactggct
                  Rat  gatgcttgaatcttacttaggaggaggaataaaatagtcattggagattgatggagggaaga---tggct
               Rabbit  ======================================================================
           Guinea pig  ======================================================================
             Bushbaby  ======================================================================
                  Cow  ======================================================================
             Elephant  ======================================================================
              Manatee  ======================================================================
             Squirrel  ======================================================================
               Rhesus  ======================================================================
            Orangutan  ======================================================================
      Squirrel monkey  ======================================================================
                  Pig  ======================================================================
                Horse  ======================================================================
                Panda  ======================================================================
                  Dog  ======================================================================
             Marmoset  ======================================================================
               Gibbon  ======================================================================
              Gorilla  ======================================================================
                Chimp  ======================================================================
       Naked mole-rat  ======================================================================
                Human  ----------------------------------------------------------------------
              Tarsier  ======================================================================
               Tenrec  ======================================================================
                 Pika  ======================================================================
               Alpaca  ======================================================================
           Tree shrew  ======================================================================
                Sheep  ======================================================================
               Medaka  ======================================================================
        X. tropicalis  ======================================================================
             Platypus  ======================================================================
               Turkey  ======================================================================
           Coelacanth  ======================================================================
      Tasmanian devil  ======================================================================
              Opossum  ======================================================================
               Lizard  ======================================================================
           Budgerigar  ======================================================================
          Zebra finch  ======================================================================
              Chicken  ======================================================================
       Painted turtle  ======================================================================
                Shrew  ======================================================================
     Little brown bat  ======================================================================
               Baboon  ======================================================================
                Sloth  ======================================================================
            Armadillo  ======================================================================
                  Cat  ======================================================================
          Mouse lemur  ======================================================================
             Hedgehog  ======================================================================
         Kangaroo rat  ======================================================================
           Rock hyrax  ======================================================================
              Megabat  ======================================================================
              Dolphin  ======================================================================

                Mouse  gagagaggggctaggaaggggtatgagggaggagtcaggatcaggtgtagggagaggcagaagagaggga
                  Rat  gggagaggtgataggaaagggaatgggagaggtgtcaggatcaggtgtagggagagacaaaagagagggc
               Rabbit  ======================================================================
           Guinea pig  ======================================================================
             Bushbaby  ======================================================================
                  Cow  ======================================================================
             Elephant  ======================================================================
              Manatee  ======================================================================
             Squirrel  ======================================================================
               Rhesus  ======================================================================
            Orangutan  ======================================================================
      Squirrel monkey  ======================================================================
                  Pig  ======================================================================
                Horse  ======================================================================
                Panda  ======================================================================
                  Dog  ======================================================================
             Marmoset  ======================================================================
               Gibbon  ======================================================================
              Gorilla  ======================================================================
                Chimp  ======================================================================
       Naked mole-rat  ======================================================================
                Human  ----------------------------------------------------------------------
              Tarsier  ======================================================================
               Tenrec  ======================================================================
                 Pika  ======================================================================
               Alpaca  ======================================================================
           Tree shrew  ======================================================================
                Sheep  ======================================================================
               Medaka  ======================================================================
        X. tropicalis  ======================================================================
             Platypus  ======================================================================
               Turkey  ======================================================================
           Coelacanth  ======================================================================
      Tasmanian devil  ======================================================================
              Opossum  ======================================================================
               Lizard  ======================================================================
           Budgerigar  ======================================================================
          Zebra finch  ======================================================================
              Chicken  ======================================================================
       Painted turtle  ======================================================================
                Shrew  ======================================================================
     Little brown bat  ======================================================================
               Baboon  ======================================================================
                Sloth  ======================================================================
            Armadillo  ======================================================================
                  Cat  ======================================================================
          Mouse lemur  ======================================================================
             Hedgehog  ======================================================================
         Kangaroo rat  ======================================================================
           Rock hyrax  ======================================================================
              Megabat  ======================================================================
              Dolphin  ======================================================================

                Mouse  --------caggagaatgaatggaagactgcagtttcaggggtgagggttgggggtggtgattctcctct
                  Rat  aagaaggccaggagaattaatggaaatctgtagtttactggg--------gggggtggtgaatcttctgg
               Rabbit  ======================================================================
           Guinea pig  ======================================================================
             Bushbaby  ======================================================================
                  Cow  ======================================================================
             Elephant  ======================================================================
              Manatee  ======================================================================
             Squirrel  ======================================================================
               Rhesus  ======================================================================
            Orangutan  ======================================================================
      Squirrel monkey  ======================================================================
                  Pig  ======================================================================
                Horse  ======================================================================
                Panda  ======================================================================
                  Dog  ======================================================================
             Marmoset  ======================================================================
               Gibbon  ======================================================================
              Gorilla  ======================================================================
                Chimp  ======================================================================
       Naked mole-rat  ======================================================================
                Human  ----------------------------------------------------------------------
              Tarsier  ======================================================================
               Tenrec  ======================================================================
                 Pika  ======================================================================
               Alpaca  ======================================================================
           Tree shrew  ======================================================================
                Sheep  ======================================================================
               Medaka  ======================================================================
        X. tropicalis  ======================================================================
             Platypus  ======================================================================
               Turkey  ======================================================================
           Coelacanth  ======================================================================
      Tasmanian devil  ======================================================================
              Opossum  ======================================================================
               Lizard  ======================================================================
           Budgerigar  ======================================================================
          Zebra finch  ======================================================================
              Chicken  ======================================================================
       Painted turtle  ======================================================================
                Shrew  ======================================================================
     Little brown bat  ======================================================================
               Baboon  ======================================================================
                Sloth  ======================================================================
            Armadillo  ======================================================================
                  Cat  ======================================================================
          Mouse lemur  ======================================================================
             Hedgehog  ======================================================================
         Kangaroo rat  ======================================================================
           Rock hyrax  ======================================================================
              Megabat  ======================================================================
              Dolphin  ======================================================================

                Mouse  gctgggggaagctcccaggagtcaatgcaggtgaccttagctgaggtgcctaacagtagggatatggaag
                  Rat  gctgggggaggctcctaggagtcaatgcaggtgaccttaactgagacgcccaacagtggggatatggaaa
               Rabbit  ======================================================================
           Guinea pig  ======================================================================
             Bushbaby  ======================================================================
                  Cow  ======================================================================
             Elephant  ======================================================================
              Manatee  ======================================================================
             Squirrel  ======================================================================
               Rhesus  ======================================================================
            Orangutan  ======================================================================
      Squirrel monkey  ======================================================================
                  Pig  ======================================================================
                Horse  ======================================================================
                Panda  ======================================================================
                  Dog  ======================================================================
             Marmoset  ======================================================================
               Gibbon  ======================================================================
              Gorilla  ======================================================================
                Chimp  ======================================================================
       Naked mole-rat  ======================================================================
                Human  ----------------------------------------------------------------------
              Tarsier  ======================================================================
               Tenrec  ======================================================================
                 Pika  ======================================================================
               Alpaca  ======================================================================
           Tree shrew  ======================================================================
                Sheep  ======================================================================
               Medaka  ======================================================================
        X. tropicalis  ======================================================================
             Platypus  ======================================================================
               Turkey  ======================================================================
           Coelacanth  ======================================================================
      Tasmanian devil  ======================================================================
              Opossum  ======================================================================
               Lizard  ======================================================================
           Budgerigar  ======================================================================
          Zebra finch  ======================================================================
              Chicken  ======================================================================
       Painted turtle  ======================================================================
                Shrew  ======================================================================
     Little brown bat  ======================================================================
               Baboon  ======================================================================
                Sloth  ======================================================================
            Armadillo  ======================================================================
                  Cat  ======================================================================
          Mouse lemur  ======================================================================
             Hedgehog  ======================================================================
         Kangaroo rat  ======================================================================
           Rock hyrax  ======================================================================
              Megabat  ======================================================================
              Dolphin  ======================================================================

                Mouse  ctgagg---ccacctcctgtagccaggcaggtacccccagtggagggataatgacaccaacccacccaca
                  Rat  cagaagaagctaccttctgtagccgggcagg--cccccagtggaggggtaaggacatccagtcacccatc
               Rabbit  ======================================================================
           Guinea pig  ======================================================================
             Bushbaby  ======================================================================
                  Cow  ======================================================================
             Elephant  ======================================================================
              Manatee  ======================================================================
             Squirrel  ======================================================================
               Rhesus  ======================================================================
            Orangutan  ======================================================================
      Squirrel monkey  ======================================================================
                  Pig  ======================================================================
                Horse  ======================================================================
                Panda  ======================================================================
                  Dog  ======================================================================
             Marmoset  ======================================================================
               Gibbon  ======================================================================
              Gorilla  ======================================================================
                Chimp  ======================================================================
       Naked mole-rat  ======================================================================
                Human  ----------------------------------------------------------------------
              Tarsier  ======================================================================
               Tenrec  ======================================================================
                 Pika  ======================================================================
               Alpaca  ======================================================================
           Tree shrew  ======================================================================
                Sheep  ======================================================================
               Medaka  ======================================================================
        X. tropicalis  ======================================================================
             Platypus  ======================================================================
               Turkey  ======================================================================
           Coelacanth  ======================================================================
      Tasmanian devil  ======================================================================
              Opossum  ======================================================================
               Lizard  ======================================================================
           Budgerigar  ======================================================================
          Zebra finch  ======================================================================
              Chicken  ======================================================================
       Painted turtle  ======================================================================
                Shrew  ======================================================================
     Little brown bat  ======================================================================
               Baboon  ======================================================================
                Sloth  ======================================================================
            Armadillo  ======================================================================
                  Cat  ======================================================================
          Mouse lemur  ======================================================================
             Hedgehog  ======================================================================
         Kangaroo rat  ======================================================================
           Rock hyrax  ======================================================================
              Megabat  ======================================================================
              Dolphin  ======================================================================

                Mouse  aaagttttgacctaaactttgccctgtctaaaagaaatgcagggacaaagatggaacagaggctgaagaa
                  Rat  aa-----tgacccaaaaattaccttttctaaaagaaatgtagggacaaagatggagcagagagtgaagaa
               Rabbit  ======================================================================
           Guinea pig  ======================================================================
             Bushbaby  ======================================================================
                  Cow  ======================================================================
             Elephant  ======================================================================
              Manatee  ======================================================================
             Squirrel  ======================================================================
               Rhesus  ======================================================================
            Orangutan  ======================================================================
      Squirrel monkey  ======================================================================
                  Pig  ======================================================================
                Horse  ======================================================================
                Panda  ======================================================================
                  Dog  ======================================================================
             Marmoset  ======================================================================
               Gibbon  ======================================================================
              Gorilla  ======================================================================
                Chimp  ======================================================================
       Naked mole-rat  ======================================================================
                Human  ----------------------------------------------------------------------
              Tarsier  ======================================================================
               Tenrec  ======================================================================
                 Pika  ======================================================================
               Alpaca  ======================================================================
           Tree shrew  ======================================================================
                Sheep  ======================================================================
               Medaka  ======================================================================
        X. tropicalis  ======================================================================
             Platypus  ======================================================================
               Turkey  ======================================================================
           Coelacanth  ======================================================================
      Tasmanian devil  ======================================================================
              Opossum  ======================================================================
               Lizard  ======================================================================
           Budgerigar  ======================================================================
          Zebra finch  ======================================================================
              Chicken  ======================================================================
       Painted turtle  ======================================================================
                Shrew  ======================================================================
     Little brown bat  ======================================================================
               Baboon  ======================================================================
                Sloth  ======================================================================
            Armadillo  ======================================================================
                  Cat  ======================================================================
          Mouse lemur  ======================================================================
             Hedgehog  ======================================================================
         Kangaroo rat  ======================================================================
           Rock hyrax  ======================================================================
              Megabat  ======================================================================
              Dolphin  ======================================================================

                Mouse  atggccaaccaataaccggcccaacttgagacccatcccatgggcaagcaccaatccttcacaatattaa
                  Rat  atggccaaccaataactggcccaacttgagactcatcccatgggcaagcaccagtccctcacattattaa
               Rabbit  ======================================================================
           Guinea pig  ======================================================================
             Bushbaby  ======================================================================
                  Cow  ======================================================================
             Elephant  ======================================================================
              Manatee  ======================================================================
             Squirrel  ======================================================================
               Rhesus  ======================================================================
            Orangutan  ======================================================================
      Squirrel monkey  ======================================================================
                  Pig  ======================================================================
                Horse  ======================================================================
                Panda  ======================================================================
                  Dog  ======================================================================
             Marmoset  ======================================================================
               Gibbon  ======================================================================
              Gorilla  ======================================================================
                Chimp  ======================================================================
       Naked mole-rat  ======================================================================
                Human  ----------------------------------------------------------------------
              Tarsier  ======================================================================
               Tenrec  ======================================================================
                 Pika  ======================================================================
               Alpaca  ======================================================================
           Tree shrew  ======================================================================
                Sheep  ======================================================================
               Medaka  ======================================================================
        X. tropicalis  ======================================================================
             Platypus  ======================================================================
               Turkey  ======================================================================
           Coelacanth  ======================================================================
      Tasmanian devil  ======================================================================
              Opossum  ======================================================================
               Lizard  ======================================================================
           Budgerigar  ======================================================================
          Zebra finch  ======================================================================
              Chicken  ======================================================================
       Painted turtle  ======================================================================
                Shrew  ======================================================================
     Little brown bat  ======================================================================
               Baboon  ======================================================================
                Sloth  ======================================================================
            Armadillo  ======================================================================
                  Cat  ======================================================================
          Mouse lemur  ======================================================================
             Hedgehog  ======================================================================
         Kangaroo rat  ======================================================================
           Rock hyrax  ======================================================================
              Megabat  ======================================================================
              Dolphin  ======================================================================

                Mouse  tgatgctgtgctgtgcttgcagacaggagcctcatataactgccctctgagaggctctccccagcagctg
                  Rat  tgatgctgtgttatacttgcagacaggaacctagcataactgtcctctgagaggctctcttcagcagctg
               Rabbit  ======================================================================
           Guinea pig  ======================================================================
             Bushbaby  ======================================================================
                  Cow  ======================================================================
             Elephant  ======================================================================
              Manatee  ======================================================================
             Squirrel  ======================================================================
               Rhesus  ======================================================================
            Orangutan  ======================================================================
      Squirrel monkey  ======================================================================
                  Pig  ======================================================================
                Horse  ======================================================================
                Panda  ======================================================================
                  Dog  ======================================================================
             Marmoset  ======================================================================
               Gibbon  ======================================================================
              Gorilla  ======================================================================
                Chimp  ======================================================================
       Naked mole-rat  ======================================================================
                Human  ----------------------------------------------------------------------
              Tarsier  ======================================================================
               Tenrec  ======================================================================
                 Pika  ======================================================================
               Alpaca  ======================================================================
           Tree shrew  ======================================================================
                Sheep  ======================================================================
               Medaka  ======================================================================
        X. tropicalis  ======================================================================
             Platypus  ======================================================================
               Turkey  ======================================================================
           Coelacanth  ======================================================================
      Tasmanian devil  ======================================================================
              Opossum  ======================================================================
               Lizard  ======================================================================
           Budgerigar  ======================================================================
          Zebra finch  ======================================================================
              Chicken  ======================================================================
       Painted turtle  ======================================================================
                Shrew  ======================================================================
     Little brown bat  ======================================================================
               Baboon  ======================================================================
                Sloth  ======================================================================
            Armadillo  ======================================================================
                  Cat  ======================================================================
          Mouse lemur  ======================================================================
             Hedgehog  ======================================================================
         Kangaroo rat  ======================================================================
           Rock hyrax  ======================================================================
              Megabat  ======================================================================
              Dolphin  ======================================================================

                Mouse  gctgaaacagatgtagagacctgcagtgaaacattagacagagctcaggaagtcttgtggaag--cactg
                  Rat  actgaaacagatacagatacccacagacaaatgttggac-----tgagggactcttatggaagattgggg
               Rabbit  ======================================================================
           Guinea pig  ======================================================================
             Bushbaby  ======================================================================
                  Cow  ======================================================================
             Elephant  ======================================================================
              Manatee  ======================================================================
             Squirrel  ======================================================================
               Rhesus  ======================================================================
            Orangutan  ======================================================================
      Squirrel monkey  ======================================================================
                  Pig  ======================================================================
                Horse  ======================================================================
                Panda  ======================================================================
                  Dog  ======================================================================
             Marmoset  ======================================================================
               Gibbon  ======================================================================
              Gorilla  ======================================================================
                Chimp  ======================================================================
       Naked mole-rat  ======================================================================
                Human  ----------------------------------------------------------------------
              Tarsier  ======================================================================
               Tenrec  ======================================================================
                 Pika  ======================================================================
               Alpaca  ======================================================================
           Tree shrew  ======================================================================
                Sheep  ======================================================================
               Medaka  ======================================================================
        X. tropicalis  ======================================================================
             Platypus  ======================================================================
               Turkey  ======================================================================
           Coelacanth  ======================================================================
      Tasmanian devil  ======================================================================
              Opossum  ======================================================================
               Lizard  ======================================================================
           Budgerigar  ======================================================================
          Zebra finch  ======================================================================
              Chicken  ======================================================================
       Painted turtle  ======================================================================
                Shrew  ======================================================================
     Little brown bat  ======================================================================
               Baboon  ======================================================================
                Sloth  ======================================================================
            Armadillo  ======================================================================
                  Cat  ======================================================================
          Mouse lemur  ======================================================================
             Hedgehog  ======================================================================
         Kangaroo rat  ======================================================================
           Rock hyrax  ======================================================================
              Megabat  ======================================================================
              Dolphin  ======================================================================

                Mouse  ggagaggactgagggtcctgaaggggataagaactccacaggaagaccaacagagtcagctaacacggac
                  Rat  gaggaggactgaaggtgctgaaggggataggaactccacaggaagaccaacagtgtcaactaacctagac
               Rabbit  ======================================================================
           Guinea pig  ======================================================================
             Bushbaby  ======================================================================
                  Cow  ======================================================================
             Elephant  ======================================================================
              Manatee  ======================================================================
             Squirrel  ======================================================================
               Rhesus  ======================================================================
            Orangutan  ======================================================================
      Squirrel monkey  ======================================================================
                  Pig  ======================================================================
                Horse  ======================================================================
                Panda  ======================================================================
                  Dog  ======================================================================
             Marmoset  ======================================================================
               Gibbon  ======================================================================
              Gorilla  ======================================================================
                Chimp  ======================================================================
       Naked mole-rat  ======================================================================
                Human  ----------------------------------------------------------------------
              Tarsier  ======================================================================
               Tenrec  ======================================================================
                 Pika  ======================================================================
               Alpaca  ======================================================================
           Tree shrew  ======================================================================
                Sheep  ======================================================================
               Medaka  ======================================================================
        X. tropicalis  ======================================================================
             Platypus  ======================================================================
               Turkey  ======================================================================
           Coelacanth  ======================================================================
      Tasmanian devil  ======================================================================
              Opossum  ======================================================================
               Lizard  ======================================================================
           Budgerigar  ======================================================================
          Zebra finch  ======================================================================
              Chicken  ======================================================================
       Painted turtle  ======================================================================
                Shrew  ======================================================================
     Little brown bat  ======================================================================
               Baboon  ======================================================================
                Sloth  ======================================================================
            Armadillo  ======================================================================
                  Cat  ======================================================================
          Mouse lemur  ======================================================================
             Hedgehog  ======================================================================
         Kangaroo rat  ======================================================================
           Rock hyrax  ======================================================================
              Megabat  ======================================================================
              Dolphin  ======================================================================

                Mouse  ccctggcaactcccagagactaatccactaaccaaagaggttacataggctggaatgaggacccccagca
                  Rat  cctaggccactcccagggactgagccactaaccaaagaggacacacaggctggactgaggacccccagca
               Rabbit  ======================================================================
           Guinea pig  ======================================================================
             Bushbaby  ======================================================================
                  Cow  ======================================================================
             Elephant  ======================================================================
              Manatee  ======================================================================
             Squirrel  ======================================================================
               Rhesus  ======================================================================
            Orangutan  ======================================================================
      Squirrel monkey  ======================================================================
                  Pig  ======================================================================
                Horse  ======================================================================
                Panda  ======================================================================
                  Dog  ======================================================================
             Marmoset  ======================================================================
               Gibbon  ======================================================================
              Gorilla  ======================================================================
                Chimp  ======================================================================
       Naked mole-rat  ======================================================================
                Human  ----------------------------------------------------------------------
              Tarsier  ======================================================================
               Tenrec  ======================================================================
                 Pika  ======================================================================
               Alpaca  ======================================================================
           Tree shrew  ======================================================================
                Sheep  ======================================================================
               Medaka  ======================================================================
        X. tropicalis  ======================================================================
             Platypus  ======================================================================
               Turkey  ======================================================================
           Coelacanth  ======================================================================
      Tasmanian devil  ======================================================================
              Opossum  ======================================================================
               Lizard  ======================================================================
           Budgerigar  ======================================================================
          Zebra finch  ======================================================================
              Chicken  ======================================================================
       Painted turtle  ======================================================================
                Shrew  ======================================================================
     Little brown bat  ======================================================================
               Baboon  ======================================================================
                Sloth  ======================================================================
            Armadillo  ======================================================================
                  Cat  ======================================================================
          Mouse lemur  ======================================================================
             Hedgehog  ======================================================================
         Kangaroo rat  ======================================================================
           Rock hyrax  ======================================================================
              Megabat  ======================================================================
              Dolphin  ======================================================================

                Mouse  catatgtagcagacgtgtaccaacaatgggagcagggcctgatcctaaaactgtagcctaactgtggatt
                  Rat  catatatagcagatgtgcaccaacaacgggagcaggggctgtccctaaagttgtagcctaattgtggact
               Rabbit  ======================================================================
           Guinea pig  ======================================================================
             Bushbaby  ======================================================================
                  Cow  ======================================================================
             Elephant  ======================================================================
              Manatee  ======================================================================
             Squirrel  ======================================================================
               Rhesus  ======================================================================
            Orangutan  ======================================================================
      Squirrel monkey  ======================================================================
                  Pig  ======================================================================
                Horse  ======================================================================
                Panda  ======================================================================
                  Dog  ======================================================================
             Marmoset  ======================================================================
               Gibbon  ======================================================================
              Gorilla  ======================================================================
                Chimp  ======================================================================
       Naked mole-rat  ======================================================================
                Human  ----------------------------------------------------------------------
              Tarsier  ======================================================================
               Tenrec  ======================================================================
                 Pika  ======================================================================
               Alpaca  ======================================================================
           Tree shrew  ======================================================================
                Sheep  ======================================================================
               Medaka  ======================================================================
        X. tropicalis  ======================================================================
             Platypus  ======================================================================
               Turkey  ======================================================================
           Coelacanth  ======================================================================
      Tasmanian devil  ======================================================================
              Opossum  ======================================================================
               Lizard  ======================================================================
           Budgerigar  ======================================================================
          Zebra finch  ======================================================================
              Chicken  ======================================================================
       Painted turtle  ======================================================================
                Shrew  ======================================================================
     Little brown bat  ======================================================================
               Baboon  ======================================================================
                Sloth  ======================================================================
            Armadillo  ======================================================================
                  Cat  ======================================================================
          Mouse lemur  ======================================================================
             Hedgehog  ======================================================================
         Kangaroo rat  ======================================================================
           Rock hyrax  ======================================================================
              Megabat  ======================================================================
              Dolphin  ======================================================================

                Mouse  cagttccctaacagac--------------------------------------cttgtctggcctgctt
                  Rat  tagtttcctaacaggcagttgtagcctaattgtggacttagtttcctaacaggccttgtctggcctcctt
               Rabbit  ======================================================================
           Guinea pig  ======================================================================
             Bushbaby  ======================================================================
                  Cow  ======================================================================
             Elephant  ======================================================================
              Manatee  ======================================================================
             Squirrel  ======================================================================
               Rhesus  ======================================================================
            Orangutan  ======================================================================
      Squirrel monkey  ======================================================================
                  Pig  ======================================================================
                Horse  ======================================================================
                Panda  ======================================================================
                  Dog  ======================================================================
             Marmoset  ======================================================================
               Gibbon  ======================================================================
              Gorilla  ======================================================================
                Chimp  ======================================================================
       Naked mole-rat  ======================================================================
                Human  ----------------------------------------------------------------------
              Tarsier  ======================================================================
               Tenrec  ======================================================================
                 Pika  ======================================================================
               Alpaca  ======================================================================
           Tree shrew  ======================================================================
                Sheep  ======================================================================
               Medaka  ======================================================================
        X. tropicalis  ======================================================================
             Platypus  ======================================================================
               Turkey  ======================================================================
           Coelacanth  ======================================================================
      Tasmanian devil  ======================================================================
              Opossum  ======================================================================
               Lizard  ======================================================================
           Budgerigar  ======================================================================
          Zebra finch  ======================================================================
              Chicken  ======================================================================
       Painted turtle  ======================================================================
                Shrew  ======================================================================
     Little brown bat  ======================================================================
               Baboon  ======================================================================
                Sloth  ======================================================================
            Armadillo  ======================================================================
                  Cat  ======================================================================
          Mouse lemur  ======================================================================
             Hedgehog  ======================================================================
         Kangaroo rat  ======================================================================
           Rock hyrax  ======================================================================
              Megabat  ======================================================================
              Dolphin  ======================================================================

                Mouse  gggggaggatgtgctcaatcctgcagagactttatgtgccaggatgggg-aataccaagcgggagggggg
                  Rat  gggagaaaatgtgcctaatcctgcagagacttgatgtgtcaggatgggggaataccaag-----gggaga
               Rabbit  ======================================================================
           Guinea pig  ======================================================================
             Bushbaby  ======================================================================
                  Cow  ======================================================================
             Elephant  ======================================================================
              Manatee  ======================================================================
             Squirrel  ======================================================================
               Rhesus  ======================================================================
            Orangutan  ======================================================================
      Squirrel monkey  ======================================================================
                  Pig  ======================================================================
                Horse  ======================================================================
                Panda  ======================================================================
                  Dog  ======================================================================
             Marmoset  ======================================================================
               Gibbon  ======================================================================
              Gorilla  ======================================================================
                Chimp  ======================================================================
       Naked mole-rat  ======================================================================
                Human  ----------------------------------------------------------------------
              Tarsier  ======================================================================
               Tenrec  ======================================================================
                 Pika  ======================================================================
               Alpaca  ======================================================================
           Tree shrew  ======================================================================
                Sheep  ======================================================================
               Medaka  ======================================================================
        X. tropicalis  ======================================================================
             Platypus  ======================================================================
               Turkey  ======================================================================
           Coelacanth  ======================================================================
      Tasmanian devil  ======================================================================
              Opossum  ======================================================================
               Lizard  ======================================================================
           Budgerigar  ======================================================================
          Zebra finch  ======================================================================
              Chicken  ======================================================================
       Painted turtle  ======================================================================
                Shrew  ======================================================================
     Little brown bat  ======================================================================
               Baboon  ======================================================================
                Sloth  ======================================================================
            Armadillo  ======================================================================
                  Cat  ======================================================================
          Mouse lemur  ======================================================================
             Hedgehog  ======================================================================
         Kangaroo rat  ======================================================================
           Rock hyrax  ======================================================================
              Megabat  ======================================================================
              Dolphin  ======================================================================

                Mouse  gactctctcagag-agaaggggagg-ggaatggggagaagggctctgtgaag------------------
                  Rat  taccctctcagaggagaaggggaaaaggaatggggagagggactctgtgaggtgtgtgtgtgtgtgtgtg
               Rabbit  ======================================================================
           Guinea pig  ======================================================================
             Bushbaby  ======================================================================
                  Cow  ======================================================================
             Elephant  ======================================================================
              Manatee  ======================================================================
             Squirrel  ======================================================================
               Rhesus  ======================================================================
            Orangutan  ======================================================================
      Squirrel monkey  ======================================================================
                  Pig  ======================================================================
                Horse  ======================================================================
                Panda  ======================================================================
                  Dog  ======================================================================
             Marmoset  ======================================================================
               Gibbon  ======================================================================
              Gorilla  ======================================================================
                Chimp  ======================================================================
       Naked mole-rat  ======================================================================
                Human  ----------------------------------------------------------------------
              Tarsier  ======================================================================
               Tenrec  ======================================================================
                 Pika  ======================================================================
               Alpaca  ======================================================================
           Tree shrew  ======================================================================
                Sheep  ======================================================================
               Medaka  ======================================================================
        X. tropicalis  ======================================================================
             Platypus  ======================================================================
               Turkey  ======================================================================
           Coelacanth  ======================================================================
      Tasmanian devil  ======================================================================
              Opossum  ======================================================================
               Lizard  ======================================================================
           Budgerigar  ======================================================================
          Zebra finch  ======================================================================
              Chicken  ======================================================================
       Painted turtle  ======================================================================
                Shrew  ======================================================================
     Little brown bat  ======================================================================
               Baboon  ======================================================================
                Sloth  ======================================================================
            Armadillo  ======================================================================
                  Cat  ======================================================================
          Mouse lemur  ======================================================================
             Hedgehog  ======================================================================
         Kangaroo rat  ======================================================================
           Rock hyrax  ======================================================================
              Megabat  ======================================================================
              Dolphin  ======================================================================

                Mouse  -------------------------------------------------------gtgagtggggttggg
                  Rat  gtgtgtggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatctgtgtgtgtgtgtggtgggg
               Rabbit  ======================================================================
           Guinea pig  ======================================================================
             Bushbaby  ======================================================================
                  Cow  ======================================================================
             Elephant  ======================================================================
              Manatee  ======================================================================
             Squirrel  ======================================================================
               Rhesus  ======================================================================
            Orangutan  ======================================================================
      Squirrel monkey  ======================================================================
                  Pig  ======================================================================
                Horse  ======================================================================
                Panda  ======================================================================
                  Dog  ======================================================================
             Marmoset  ======================================================================
               Gibbon  ======================================================================
              Gorilla  ======================================================================
                Chimp  ======================================================================
       Naked mole-rat  ======================================================================
                Human  ----------------------------------------------------------------------
              Tarsier  ======================================================================
               Tenrec  ======================================================================
                 Pika  ======================================================================
               Alpaca  ======================================================================
           Tree shrew  ======================================================================
                Sheep  ======================================================================
               Medaka  ======================================================================
        X. tropicalis  ======================================================================
             Platypus  ======================================================================
               Turkey  ======================================================================
           Coelacanth  ======================================================================
      Tasmanian devil  ======================================================================
              Opossum  ======================================================================
               Lizard  ======================================================================
           Budgerigar  ======================================================================
          Zebra finch  ======================================================================
              Chicken  ======================================================================
       Painted turtle  ======================================================================
                Shrew  ======================================================================
     Little brown bat  ======================================================================
               Baboon  ======================================================================
                Sloth  ======================================================================
            Armadillo  ======================================================================
                  Cat  ======================================================================
          Mouse lemur  ======================================================================
             Hedgehog  ======================================================================
         Kangaroo rat  ======================================================================
           Rock hyrax  ======================================================================
              Megabat  ======================================================================
              Dolphin  ======================================================================

                Mouse  aaa----ctgggaagatgggcagcatttgggatataagtaaattaattaattaaaaaa
                  Rat  ggcaggtctgagaggatgggcagcatttgggatgttaattgattaattaattaattaa
               Rabbit  ==========================================================
           Guinea pig  ==========================================================
             Bushbaby  ==========================================================
                  Cow  ==========================================================
             Elephant  ==========================================================
              Manatee  ==========================================================
             Squirrel  ==========================================================
               Rhesus  ==========================================================
            Orangutan  ==========================================================
      Squirrel monkey  ==========================================================
                  Pig  ==========================================================
                Horse  ==========================================================
                Panda  ==========================================================
                  Dog  ==========================================================
             Marmoset  ==========================================================
               Gibbon  ==========================================================
              Gorilla  ==========================================================
                Chimp  ==========================================================
       Naked mole-rat  ==========================================================
                Human  ----------------------------------------------------------
              Tarsier  ==========================================================
               Tenrec  ==========================================================
                 Pika  ==========================================================
               Alpaca  ==========================================================
           Tree shrew  ==========================================================
                Sheep  ==========================================================
               Medaka  ==========================================================
        X. tropicalis  ==========================================================
             Platypus  ==========================================================
               Turkey  ==========================================================
           Coelacanth  ==========================================================
      Tasmanian devil  ==========================================================
              Opossum  ==========================================================
               Lizard  ==========================================================
           Budgerigar  ==========================================================
          Zebra finch  ==========================================================
              Chicken  ==========================================================
       Painted turtle  ==========================================================
                Shrew  ==========================================================
     Little brown bat  ==========================================================
               Baboon  ==========================================================
                Sloth  ==========================================================
            Armadillo  ==========================================================
                  Cat  ==========================================================
          Mouse lemur  ==========================================================
             Hedgehog  ==========================================================
         Kangaroo rat  ==========================================================
           Rock hyrax  ==========================================================
              Megabat  ==========================================================
              Dolphin  ==========================================================

Alignment block 2 of 386 in window, 56746543 - 56746547, 5 bps 
B D             Mouse  aaaag
B D               Rat  aagag
B D             Human  atatg
B D            Rabbit  =====
B D        Guinea pig  =====
B D          Bushbaby  =====
B D               Cow  =====
B D          Elephant  =====
B D           Manatee  =====
B D          Squirrel  =====
B D            Rhesus  =====
B D         Orangutan  =====
B D   Squirrel monkey  =====
B D               Pig  =====
B D             Horse  =====
B D             Panda  =====
B D               Dog  =====
B D          Marmoset  =====
B D            Gibbon  =====
B D           Gorilla  =====
B D             Chimp  =====
B D    Naked mole-rat  =====
B D           Tarsier  =====
B D            Tenrec  =====
B D              Pika  =====
B D            Alpaca  =====
B D        Tree shrew  =====
B D             Sheep  =====
B D            Medaka  =====
B D     X. tropicalis  =====
B D          Platypus  =====
B D            Turkey  =====
B D        Coelacanth  =====
B D   Tasmanian devil  =====
B D           Opossum  =====
B D            Lizard  =====
B D        Budgerigar  =====
B D       Zebra finch  =====
B D           Chicken  =====
B D    Painted turtle  =====
B D             Shrew  =====
  D  Little brown bat  =====
B D            Baboon  =====
B D             Sloth  =====
B D         Armadillo  =====
B D               Cat  =====
B D       Mouse lemur  =====
B D          Hedgehog  =====
B D      Kangaroo rat  =====
B D        Rock hyrax  =====
B D           Megabat  =====
B D           Dolphin  =====

Alignment block 3 of 386 in window, 56746548 - 56746572, 25 bps 
B D             Mouse  agaagtcactatttggtaaccccac
B D               Rat  aggtctc---------tgaccccac
B D             Human  ---------------gcaagtctgt
B D          Marmoset  agatctctccatatggcaagtctgt
B D   Squirrel monkey  agatctctccatatggcaagtctgt
B D            Alpaca  agaactctct--------actctat
B D            Rabbit  =========================
B D        Guinea pig  =========================
B D          Bushbaby  =========================
B D               Cow  =========================
B D          Elephant  =========================
B D           Manatee  =========================
B D          Squirrel  =========================
B D            Rhesus  =========================
B D         Orangutan  =========================
B D               Pig  =========================
B D             Horse  =========================
B D             Panda  =========================
B D               Dog  =========================
B D            Gibbon  =========================
B D           Gorilla  =========================
B D             Chimp  =========================
B D    Naked mole-rat  =========================
B D           Tarsier  =========================
B D            Tenrec  =========================
B D              Pika  =========================
B D        Tree shrew  =========================
B D             Sheep  =========================
B D            Medaka  =========================
B D     X. tropicalis  =========================
B D          Platypus  =========================
B D            Turkey  =========================
B D        Coelacanth  =========================
B D   Tasmanian devil  =========================
B D           Opossum  =========================
B D            Lizard  =========================
B D        Budgerigar  =========================
B D       Zebra finch  =========================
B D           Chicken  =========================
B D    Painted turtle  =========================
B D             Shrew  =========================
  D  Little brown bat  =========================
B D            Baboon  =========================
B D             Sloth  =========================
B D         Armadillo  =========================
B D               Cat  =========================
B D       Mouse lemur  =========================
B D          Hedgehog  =========================
B D      Kangaroo rat  =========================
B D        Rock hyrax  =========================
B D           Megabat  =========================
B D           Dolphin  =========================

Alignment block 4 of 386 in window, 56746573 - 56746580, 8 bps 
B D             Mouse  tgg----aagaa---
B D               Rat  agg----gagaa---
B D             Human  ggg-ctgtagaa---
B D          Marmoset  ggg-ctctagaa---
B D   Squirrel monkey  ggg-ctctagaa---
B D            Alpaca  aggaccatagaa---
B D           Manatee  -------tagaagca
B D            Rabbit  ===============
B D        Guinea pig  ===============
B D          Bushbaby  ===============
B D               Cow  ===============
B D          Elephant  ===============
B D          Squirrel  ===============
B D            Rhesus  ===============
B D         Orangutan  ===============
B D               Pig  ===============
B D             Horse  ===============
B D             Panda  ===============
B D               Dog  ===============
B D            Gibbon  ===============
B D           Gorilla  ===============
B D             Chimp  ===============
B D    Naked mole-rat  ===============
B D           Tarsier  ===============
B D            Tenrec  ===============
B D              Pika  ===============
B D        Tree shrew  ===============
B D             Sheep  ===============
B D            Medaka  ===============
B D     X. tropicalis  ===============
B D          Platypus  ===============
B D            Turkey  ===============
B D        Coelacanth  ===============
B D   Tasmanian devil  ===============
B D           Opossum  ===============
B D            Lizard  ===============
B D        Budgerigar  ===============
B D       Zebra finch  ===============
B D           Chicken  ===============
B D    Painted turtle  ===============
B D             Shrew  ===============
  D  Little brown bat  ===============
B D            Baboon  ===============
B D             Sloth  ===============
B D         Armadillo  ===============
B D               Cat  ===============
B D       Mouse lemur  ===============
B D          Hedgehog  ===============
B D      Kangaroo rat  ===============
B D        Rock hyrax  ===============
B D           Megabat  ===============
B D           Dolphin  ===============

Inserts between block 4 and 5 in window
B D           Alpaca 3bp

Alignment block 5 of 386 in window, 56746581 - 56746582, 2 bps 
B D             Mouse  gg
B D               Rat  gg
B D             Human  gt
B D          Marmoset  at
B D   Squirrel monkey  at
B D            Alpaca  ag
B D             Horse  gg
B D           Manatee  gg
B D            Rabbit  ==
B D        Guinea pig  ==
B D          Bushbaby  ==
B D               Cow  ==
B D          Elephant  ==
B D          Squirrel  ==
B D            Rhesus  ==
B D         Orangutan  ==
B D               Pig  ==
B D             Panda  ==
B D               Dog  ==
B D            Gibbon  ==
B D           Gorilla  ==
B D             Chimp  ==
B D    Naked mole-rat  ==
B D           Tarsier  ==
B D            Tenrec  ==
B D              Pika  ==
B D        Tree shrew  ==
B D             Sheep  ==
B D            Medaka  ==
B D     X. tropicalis  ==
B D          Platypus  ==
B D            Turkey  ==
B D        Coelacanth  ==
B D   Tasmanian devil  ==
B D           Opossum  ==
B D            Lizard  ==
B D        Budgerigar  ==
B D       Zebra finch  ==
B D           Chicken  ==
B D    Painted turtle  ==
B D             Shrew  ==
  D  Little brown bat  ==
B D            Baboon  ==
B D             Sloth  ==
B D         Armadillo  ==
B D               Cat  ==
B D       Mouse lemur  ==
B D          Hedgehog  ==
B D      Kangaroo rat  ==
B D        Rock hyrax  ==
B D           Megabat  ==
B D           Dolphin  ==

Inserts between block 5 and 6 in window
B D            Horse 14bp

Alignment block 6 of 386 in window, 56746583 - 56746621, 39 bps 
B D             Mouse  a----ctgtgagagaatgaatgttgggaatggaggagcacacg------
B D               Rat  agggactgtgagagaacgaatgttgggaatggaggagcacacg------
B D             Human  aagg-ccatacgggaagaaaggctggcaatggaaaagcacatg------
B D          Marmoset  aagg-tcgtatgggagcaaaggctggcaatggagaagcacatg------
B D   Squirrel monkey  aagg-ccatatgggagcaaaggctggcaatggagaaacacatg------
B D            Alpaca  ----gctgcagggcaacaaaggttgggaaaggaaaagcacatt------
B D           Dolphin  ----accatgagggagcaaaggttgggaaaggaaaagcacact------
B D             Horse  ----gtcacactggagcaaaagctgggaatggagaagcacact------
B D           Manatee  ----tctgcatgagagcaaaggttgggaatggaagagctgacaaactgg
B D            Rabbit  =================================================
B D        Guinea pig  =================================================
B D          Bushbaby  =================================================
B D               Cow  =================================================
B D          Elephant  =================================================
B D          Squirrel  =================================================
B D            Rhesus  =================================================
B D         Orangutan  =================================================
B D               Pig  =================================================
B D             Panda  =================================================
B D               Dog  =================================================
B D            Gibbon  =================================================
B D           Gorilla  =================================================
B D             Chimp  =================================================
B D    Naked mole-rat  =================================================
B D           Tarsier  =================================================
B D            Tenrec  =================================================
B D              Pika  =================================================
B D        Tree shrew  =================================================
B D             Sheep  =================================================
B D            Medaka  =================================================
B D     X. tropicalis  =================================================
B D          Platypus  =================================================
B D            Turkey  =================================================
B D        Coelacanth  =================================================
B D   Tasmanian devil  =================================================
B D           Opossum  =================================================
B D            Lizard  =================================================
B D        Budgerigar  =================================================
B D       Zebra finch  =================================================
B D           Chicken  =================================================
B D    Painted turtle  =================================================
B D             Shrew  =================================================
  D  Little brown bat  =================================================
B D            Baboon  =================================================
B D             Sloth  =================================================
B D         Armadillo  =================================================
B D               Cat  =================================================
B D       Mouse lemur  =================================================
B D          Hedgehog  =================================================
B D      Kangaroo rat  =================================================
B D        Rock hyrax  =================================================
B D           Megabat  =================================================

Inserts between block 6 and 7 in window
B D            Human 6bp
B D         Marmoset 216bp
B D  Squirrel monkey 6bp

Alignment block 7 of 386 in window, 56746622 - 56746635, 14 bps 
B D             Mouse  gtctcgatctctac
B D               Rat  gtctgaacctccac
B D             Human  gcttccccctctat
B D   Squirrel monkey  gcttctccctctac
B D            Alpaca  cactgggcctctac
B D           Dolphin  aaccaggcctccac
B D             Horse  aactgggcctccac
B D           Manatee  gcctccacctctac
B D            Rabbit  ==============
B D        Guinea pig  ==============
B D          Bushbaby  ==============
B D               Cow  ==============
B D          Elephant  ==============
B D          Squirrel  ==============
B D            Rhesus  ==============
B D         Orangutan  ==============
B D               Pig  ==============
B D             Panda  ==============
B D               Dog  ==============
B D          Marmoset  ==============
B D            Gibbon  ==============
B D           Gorilla  ==============
B D             Chimp  ==============
B D    Naked mole-rat  ==============
B D           Tarsier  ==============
B D            Tenrec  ==============
B D              Pika  ==============
B D        Tree shrew  ==============
B D             Sheep  ==============
B D            Medaka  ==============
B D     X. tropicalis  ==============
B D          Platypus  ==============
B D            Turkey  ==============
B D        Coelacanth  ==============
B D   Tasmanian devil  ==============
B D           Opossum  ==============
B D            Lizard  ==============
B D        Budgerigar  ==============
B D       Zebra finch  ==============
B D           Chicken  ==============
B D    Painted turtle  ==============
B D             Shrew  ==============
  D  Little brown bat  ==============
B D            Baboon  ==============
B D             Sloth  ==============
B D         Armadillo  ==============
B D               Cat  ==============
B D       Mouse lemur  ==============
B D          Hedgehog  ==============
B D      Kangaroo rat  ==============
B D        Rock hyrax  ==============
B D           Megabat  ==============

Inserts between block 7 and 8 in window
B D           Alpaca 200bp
B D          Dolphin 207bp
B D            Horse 201bp
B D          Manatee 3866bp

Alignment block 8 of 386 in window, 56746636 - 56746636, 1 bps 
B D             Mouse  t
B D               Rat  t
B D            Rabbit  =
B D        Guinea pig  =
B D          Bushbaby  =
B D               Cow  =
B D          Elephant  =
B D           Manatee  =
B D          Squirrel  =
B D            Rhesus  =
B D         Orangutan  =
B D   Squirrel monkey  -
B D               Pig  =
B D             Horse  =
B D             Panda  =
B D               Dog  =
B D          Marmoset  =
B D            Gibbon  =
B D           Gorilla  =
B D             Chimp  =
B D    Naked mole-rat  =
B D             Human  -
B D           Tarsier  =
B D            Tenrec  =
B D              Pika  =
B D            Alpaca  =
B D        Tree shrew  =
B D             Sheep  =
B D            Medaka  =
B D     X. tropicalis  =
B D          Platypus  =
B D            Turkey  =
B D        Coelacanth  =
B D   Tasmanian devil  =
B D           Opossum  =
B D            Lizard  =
B D        Budgerigar  =
B D       Zebra finch  =
B D           Chicken  =
B D    Painted turtle  =
B D             Shrew  =
  D  Little brown bat  =
B D            Baboon  =
B D             Sloth  =
B D         Armadillo  =
B D               Cat  =
B D       Mouse lemur  =
B D          Hedgehog  =
B D      Kangaroo rat  =
B D        Rock hyrax  =
B D           Megabat  =
B D           Dolphin  =

Alignment block 9 of 386 in window, 56746637 - 56746643, 7 bps 
B D             Mouse  gtggggc
B D               Rat  gtggggc
B D             Human  atggctt
B D   Squirrel monkey  atgggat
B D          Bushbaby  gtgaggc
B D            Rabbit  =======
B D        Guinea pig  =======
B D               Cow  =======
B D          Elephant  =======
B D           Manatee  =======
B D          Squirrel  =======
B D            Rhesus  =======
B D         Orangutan  =======
B D               Pig  =======
B D             Horse  =======
B D             Panda  =======
B D               Dog  =======
B D          Marmoset  =======
B D            Gibbon  =======
B D           Gorilla  =======
B D             Chimp  =======
B D    Naked mole-rat  =======
B D           Tarsier  =======
B D            Tenrec  =======
B D              Pika  =======
B D            Alpaca  =======
B D        Tree shrew  =======
B D             Sheep  =======
B D            Medaka  =======
B D     X. tropicalis  =======
B D          Platypus  =======
B D            Turkey  =======
B D        Coelacanth  =======
B D   Tasmanian devil  =======
B D           Opossum  =======
B D            Lizard  =======
B D        Budgerigar  =======
B D       Zebra finch  =======
B D           Chicken  =======
B D    Painted turtle  =======
B D             Shrew  =======
  D  Little brown bat  =======
B D            Baboon  =======
B D             Sloth  =======
B D         Armadillo  =======
B D               Cat  =======
B D       Mouse lemur  =======
B D          Hedgehog  =======
B D      Kangaroo rat  =======
B D        Rock hyrax  =======
B D           Megabat  =======
B D           Dolphin  =======

Alignment block 10 of 386 in window, 56746644 - 56746644, 1 bps 
B D             Mouse  t
B D               Rat  t
B D             Human  t
B D   Squirrel monkey  t
B D          Bushbaby  t
B D        Rock hyrax  t
B D            Rabbit  =
B D        Guinea pig  =
B D               Cow  =
B D          Elephant  =
B D           Manatee  =
B D          Squirrel  =
B D            Rhesus  =
B D         Orangutan  =
B D               Pig  =
B D             Horse  =
B D             Panda  =
B D               Dog  =
B D          Marmoset  =
B D            Gibbon  =
B D           Gorilla  =
B D             Chimp  =
B D    Naked mole-rat  =
B D           Tarsier  =
B D            Tenrec  =
B D              Pika  =
B D            Alpaca  =
B D        Tree shrew  =
B D             Sheep  =
B D            Medaka  =
B D     X. tropicalis  =
B D          Platypus  =
B D            Turkey  =
B D        Coelacanth  =
B D   Tasmanian devil  =
B D           Opossum  =
B D            Lizard  =
B D        Budgerigar  =
B D       Zebra finch  =
B D           Chicken  =
B D    Painted turtle  =
B D             Shrew  =
  D  Little brown bat  =
B D            Baboon  =
B D             Sloth  =
B D         Armadillo  =
B D               Cat  =
B D       Mouse lemur  =
B D          Hedgehog  =
B D      Kangaroo rat  =
B D           Megabat  =
B D           Dolphin  =

Alignment block 11 of 386 in window, 56746645 - 56746648, 4 bps 
B D             Mouse  tcag
B D               Rat  tcag
B D             Human  ccag
B D   Squirrel monkey  ccag
B D          Bushbaby  taga
B D        Rock hyrax  tcag
B D           Manatee  tcag
B D            Rabbit  ====
B D        Guinea pig  ====
B D               Cow  ====
B D          Elephant  ====
B D          Squirrel  ====
B D            Rhesus  ====
B D         Orangutan  ====
B D               Pig  ====
B D             Horse  ====
B D             Panda  ====
B D               Dog  ====
B D          Marmoset  ====
B D            Gibbon  ====
B D           Gorilla  ====
B D             Chimp  ====
B D    Naked mole-rat  ====
B D           Tarsier  ====
B D            Tenrec  ====
B D              Pika  ====
B D            Alpaca  ====
B D        Tree shrew  ====
B D             Sheep  ====
B D            Medaka  ====
B D     X. tropicalis  ====
B D          Platypus  ====
B D            Turkey  ====
B D        Coelacanth  ====
B D   Tasmanian devil  ====
B D           Opossum  ====
B D            Lizard  ====
B D        Budgerigar  ====
B D       Zebra finch  ====
B D           Chicken  ====
B D    Painted turtle  ====
B D             Shrew  ====
  D  Little brown bat  ====
B D            Baboon  ====
B D             Sloth  ====
B D         Armadillo  ====
B D               Cat  ====
B D       Mouse lemur  ====
B D          Hedgehog  ====
B D      Kangaroo rat  ====
B D           Megabat  ====
B D           Dolphin  ====

Inserts between block 11 and 12 in window
B D            Human 118bp
B D         Bushbaby 2bp

Alignment block 12 of 386 in window, 56746649 - 56746652, 4 bps 
B D             Mouse  -tgta
B D               Rat  -tgta
B D             Human  ---tg
B D   Squirrel monkey  -ccta
B D          Bushbaby  -ttca
B D               Dog  -tgtg
B D        Rock hyrax  aggt-
B D           Manatee  aggt-
B D            Rabbit  =====
B D        Guinea pig  =====
B D               Cow  =====
B D          Elephant  =====
B D          Squirrel  =====
B D            Rhesus  =====
B D         Orangutan  =====
B D               Pig  =====
B D             Horse  =====
B D             Panda  =====
B D          Marmoset  =====
B D            Gibbon  =====
B D           Gorilla  =====
B D             Chimp  =====
B D    Naked mole-rat  =====
B D           Tarsier  =====
B D            Tenrec  =====
B D              Pika  =====
B D            Alpaca  =====
B D        Tree shrew  =====
B D             Sheep  =====
B D            Medaka  =====
B D     X. tropicalis  =====
B D          Platypus  =====
B D            Turkey  =====
B D        Coelacanth  =====
B D   Tasmanian devil  =====
B D           Opossum  =====
B D            Lizard  =====
B D        Budgerigar  =====
B D       Zebra finch  =====
B D           Chicken  =====
B D    Painted turtle  =====
B D             Shrew  =====
  D  Little brown bat  =====
B D            Baboon  =====
B D             Sloth  =====
B D         Armadillo  =====
B D               Cat  =====
B D       Mouse lemur  =====
B D          Hedgehog  =====
B D      Kangaroo rat  =====
B D           Megabat  =====
B D           Dolphin  =====

Inserts between block 12 and 13 in window
B D            Human 2bp
B D  Squirrel monkey 178bp
B D         Bushbaby 5bp
B D              Dog 4bp

Alignment block 13 of 386 in window, 56746653 - 56746657, 5 bps 
B D             Mouse  ----t--caga
B D               Rat  ----tgtcaca
B D             Human  ----t------
B D   Squirrel monkey  ----t------
B D          Bushbaby  ----t------
B D               Dog  ----t------
B D        Rock hyrax  taagt------
B D           Manatee  taagt------
B D            Rabbit  ===========
B D        Guinea pig  ===========
B D               Cow  ===========
B D          Elephant  ===========
B D          Squirrel  ===========
B D            Rhesus  ===========
B D         Orangutan  ===========
B D               Pig  ===========
B D             Horse  ===========
B D             Panda  ===========
B D          Marmoset  ===========
B D            Gibbon  ===========
B D           Gorilla  ===========
B D             Chimp  ===========
B D    Naked mole-rat  ===========
B D           Tarsier  ===========
B D            Tenrec  ===========
B D              Pika  ===========
B D            Alpaca  ===========
B D        Tree shrew  ===========
B D             Sheep  ===========
B D            Medaka  ===========
B D     X. tropicalis  ===========
B D          Platypus  ===========
B D            Turkey  ===========
B D        Coelacanth  ===========
B D   Tasmanian devil  ===========
B D           Opossum  ===========
B D            Lizard  ===========
B D        Budgerigar  ===========
B D       Zebra finch  ===========
B D           Chicken  ===========
B D    Painted turtle  ===========
B D             Shrew  ===========
  D  Little brown bat  ===========
B D            Baboon  ===========
B D             Sloth  ===========
B D         Armadillo  ===========
B D               Cat  ===========
B D       Mouse lemur  ===========
B D          Hedgehog  ===========
B D      Kangaroo rat  ===========
B D           Megabat  ===========
B D           Dolphin  ===========

Inserts between block 13 and 14 in window
B D            Human 4bp
B D       Rock hyrax 4bp
B D          Manatee 4bp

Alignment block 14 of 386 in window, 56746658 - 56746658, 1 bps 
B D             Mouse  t
B D               Rat  t
B D    Naked mole-rat  t
B D          Squirrel  t
B D             Human  t
B D           Gorilla  t
B D            Baboon  t
B D          Marmoset  t
B D   Squirrel monkey  t
B D           Tarsier  t
B D          Bushbaby  t
B D        Tree shrew  t
B D            Alpaca  t
B D           Dolphin  t
B D             Sheep  t
B D               Cow  t
B D               Dog  t
B D             Horse  t
B D        Rock hyrax  t
B D           Manatee  t
B D             Sloth  t
B D            Rabbit  =
B D        Guinea pig  =
B D          Elephant  =
B D            Rhesus  =
B D         Orangutan  =
B D               Pig  =
B D             Panda  =
B D            Gibbon  =
B D             Chimp  =
B D            Tenrec  =
B D              Pika  =
B D            Medaka  =
B D     X. tropicalis  =
B D          Platypus  =
B D            Turkey  =
B D        Coelacanth  =
B D   Tasmanian devil  =
B D           Opossum  =
B D            Lizard  =
B D        Budgerigar  =
B D       Zebra finch  =
B D           Chicken  =
B D    Painted turtle  =
B D             Shrew  =
  D  Little brown bat  =
B D         Armadillo  =
B D               Cat  =
B D       Mouse lemur  =
B D          Hedgehog  =
B D      Kangaroo rat  =
B D           Megabat  =

Inserts between block 14 and 15 in window
B D            Human 62bp

Alignment block 15 of 386 in window, 56746659 - 56746659, 1 bps 
B D             Mouse  a
B D               Rat  a
B D    Naked mole-rat  g
B D          Squirrel  g
B D             Human  a
B D             Chimp  a
B D           Gorilla  a
B D         Orangutan  a
B D            Gibbon  a
B D            Baboon  g
B D          Marmoset  g
B D   Squirrel monkey  g
B D           Tarsier  g
B D          Bushbaby  g
B D        Tree shrew  g
B D            Alpaca  g
B D           Dolphin  g
B D             Sheep  g
B D               Cow  g
B D               Dog  g
B D             Horse  g
B D        Rock hyrax  a
B D           Manatee  g
B D             Sloth  g
B D            Rabbit  =
B D        Guinea pig  =
B D          Elephant  =
B D            Rhesus  =
B D               Pig  =
B D             Panda  =
B D            Tenrec  =
B D              Pika  =
B D            Medaka  =
B D     X. tropicalis  =
B D          Platypus  =
B D            Turkey  =
B D        Coelacanth  =
B D   Tasmanian devil  =
B D           Opossum  =
B D            Lizard  =
B D        Budgerigar  =
B D       Zebra finch  =
B D           Chicken  =
B D    Painted turtle  =
B D             Shrew  =
  D  Little brown bat  =
B D         Armadillo  =
B D               Cat  =
B D       Mouse lemur  =
B D          Hedgehog  =
B D      Kangaroo rat  =
B D           Megabat  =

Alignment block 16 of 386 in window, 56746660 - 56746665, 6 bps 
B D             Mouse  cctgac
B D               Rat  cctgac
B D    Naked mole-rat  cccaag
B D          Squirrel  cccaag
B D             Human  cccaag
B D             Chimp  cccaag
B D           Gorilla  cccaag
B D         Orangutan  cccaag
B D            Gibbon  cccaag
B D            Rhesus  cccaag
B D            Baboon  cccaag
B D          Marmoset  cccaag
B D   Squirrel monkey  cccaag
B D           Tarsier  cccaag
B D          Bushbaby  cccaag
B D        Tree shrew  cctaag
B D            Alpaca  ctcaag
B D           Dolphin  ctcaat
B D             Sheep  ctcaag
B D               Cow  ctcaag
B D               Dog  ctgaaa
B D             Horse  cccaag
B D        Rock hyrax  tccaat
B D           Manatee  tccaat
B D             Sloth  cccaag
B D            Rabbit  ======
B D        Guinea pig  ======
B D          Elephant  ======
B D               Pig  ======
B D             Panda  ======
B D            Tenrec  ======
B D              Pika  ======
B D            Medaka  ======
B D     X. tropicalis  ======
B D          Platypus  ======
B D            Turkey  ======
B D        Coelacanth  ======
B D   Tasmanian devil  ======
B D           Opossum  ======
B D            Lizard  ======
B D        Budgerigar  ======
B D       Zebra finch  ======
B D           Chicken  ======
B D    Painted turtle  ======
B D             Shrew  ======
  D  Little brown bat  ======
B D         Armadillo  ======
B D               Cat  ======
B D       Mouse lemur  ======
B D          Hedgehog  ======
B D      Kangaroo rat  ======
B D           Megabat  ======

Alignment block 17 of 386 in window, 56746666 - 56746669, 4 bps 
B D             Mouse  atca---
B D               Rat  atca---
B D    Naked mole-rat  atca---
B D          Squirrel  gaca---
B D             Human  atta---
B D             Chimp  atta---
B D           Gorilla  atta---
B D         Orangutan  atta---
B D            Gibbon  atta---
B D            Rhesus  atta---
B D            Baboon  atta---
B D          Marmoset  atta---
B D   Squirrel monkey  atta---
B D           Tarsier  atca---
B D          Bushbaby  atca---
B D        Tree shrew  atca---
B D            Alpaca  atca---
B D           Dolphin  atca---
B D             Sheep  atca---
B D               Cow  atca---
B D               Dog  atca---
B D             Horse  atca---
  D  Little brown bat  atca---
B D           Megabat  acca---
B D        Rock hyrax  ---at--
B D           Manatee  ---at--
B D             Sloth  ---ataa
B D            Rabbit  =======
B D        Guinea pig  =======
B D          Elephant  =======
B D               Pig  =======
B D             Panda  =======
B D            Tenrec  =======
B D              Pika  =======
B D            Medaka  =======
B D     X. tropicalis  =======
B D          Platypus  =======
B D            Turkey  =======
B D        Coelacanth  =======
B D   Tasmanian devil  =======
B D           Opossum  =======
B D            Lizard  =======
B D        Budgerigar  =======
B D       Zebra finch  =======
B D           Chicken  =======
B D    Painted turtle  =======
B D             Shrew  =======
B D         Armadillo  =======
B D               Cat  =======
B D       Mouse lemur  =======
B D          Hedgehog  =======
B D      Kangaroo rat  =======

Alignment block 18 of 386 in window, 56746670 - 56746705, 36 bps 
B D             Mouse  caaagcaggtg-ataatgt-----c-agagctcag-----acagag--------------------at
B D               Rat  cagagcaggt--------------c-agtgctcag-----acaggg--------------------at
B D    Naked mole-rat  cagagtaagtg-gtagtccaactga-ggctctcgggctccacatct--------------------gt
B D          Squirrel  cagagtacatgagtagagc-----c-agagctcaa-----actggg--ctcttgaactacaagtctat
B D             Human  cagagtaagtg-gtaacaa-----c-agagttcca-----actgag--------------------gt
B D             Chimp  cagagtaagtg-gtaacaa-----c-agagttcca-----actgag--------------------gt
B D           Gorilla  cagagtaagtg-gtaacaa-----c-agagttcca-----actgag--------------------gt
B D         Orangutan  cagagtaagtg-gtaacaa-----c-agagttcca-----accgag--------------------gt
B D            Gibbon  cagagtaagtg-gtaacaa-----c-agagttcca-----actgag--------------------gt
B D            Rhesus  cagagtaaatg-gtaacaa-----c-aggtctcca-----actgag--------------------gt
B D            Baboon  cagagtaaatg-gtaacaa-----c-aggtctcca-----actgag--------------------gt
B D          Marmoset  cagagttagtg-gtaacaa-----c-aaagctcca-----actgag--------------------gt
B D   Squirrel monkey  cagagttagtg-gtaacaa-----c-agagctcca-----actgag--------------------gt
B D           Tarsier  cagaataagtg-gtagcac-----c-agagctcaa-----act-------------------------
B D          Bushbaby  cagagtgagtg-atagtac-----c-agagcccaa-----actgcg--------------------gc
B D        Tree shrew  cagagtaagtg-gtagcac-----t-agagctcaa-----actgag--------------------gc
B D            Alpaca  cagagcaagtg-gtaatac-----c-agagtgcaa-----accgag----------------------
B D           Dolphin  cagagttagtg-gaaggtc-----c-agagctcca-----actgag----------------------
B D             Sheep  cagagtaagtg-gaggttc-----c-agagctcaa-----actgaa----------------------
B D               Cow  ca----aagtg-gaggttc-----c-agaactcaa-----actgaa----------------------
B D               Dog  caga------g-gtggtgc-----caagagctcaa-----actaag----------------------
B D             Horse  cagagtacgtg-gtagtgc-----c-agagctcaa-----tctgag----------------------
  D  Little brown bat  cagagtgagtg-gtaatgt-----c--aagtgcaa-----actgag----------------------
B D           Megabat  cagagtcggtg-gtagtgc-----c-aaagctcaa-----acagagcc--------------------
B D          Elephant  cagggtaagtg-gtagatt-----c-agagctcaa-----accaag--------------------tc
B D        Rock hyrax  cagagtaagtg-gtgggtc-----c-agggttcaa-----acaaag--------------------gc
B D           Manatee  cagagtaagtg-gtaggtc-----c-atagctcaa-----accaag--------------------ac
B D             Sloth  tagagtaagtg-g-agcat-----c-agaactcaa-----actgag--------------------gc
B D            Rabbit  ====================================================================
B D        Guinea pig  ====================================================================
B D               Pig  ====================================================================
B D             Panda  ====================================================================
B D            Tenrec  ====================================================================
B D              Pika  ====================================================================
B D            Medaka  ====================================================================
B D     X. tropicalis  ====================================================================
B D          Platypus  ====================================================================
B D            Turkey  ====================================================================
B D        Coelacanth  ====================================================================
B D   Tasmanian devil  ====================================================================
B D           Opossum  ====================================================================
B D            Lizard  ====================================================================
B D        Budgerigar  ====================================================================
B D       Zebra finch  ====================================================================
B D           Chicken  ====================================================================
B D    Painted turtle  ====================================================================
B D             Shrew  ====================================================================
B D         Armadillo  ====================================================================
B D               Cat  ====================================================================
B D       Mouse lemur  ====================================================================
B D          Hedgehog  ====================================================================
B D      Kangaroo rat  ====================================================================

Inserts between block 18 and 19 in window
B D           Alpaca 26bp
B D          Dolphin 22bp
B D            Sheep 22bp
B D              Cow 22bp
B D          Megabat 2bp

Alignment block 19 of 386 in window, 56746706 - 56746711, 6 bps 
B D             Mouse  gtctga
B D               Rat  gtttga
B D    Naked mole-rat  gctttt
B D          Squirrel  gctttt
B D             Human  tccttg
B D             Chimp  tccttg
B D           Gorilla  tccttg
B D         Orangutan  tccttg
B D            Gibbon  tccttg
B D            Rhesus  tccttg
B D            Baboon  tccttg
B D          Marmoset  tctttg
B D   Squirrel monkey  tctttg
B D           Tarsier  --ttcg
B D          Bushbaby  ccctgg
B D        Tree shrew  cccatg
B D               Pig  -----a
B D            Alpaca  -----a
B D           Dolphin  -----a
B D             Sheep  -----g
B D               Cow  -----g
B D               Dog  ----gc
B D             Horse  ----gc
  D  Little brown bat  --cacc
B D           Megabat  gccacc
B D          Elephant  cccctg
B D        Rock hyrax  cccctg
B D           Manatee  cccctg
B D             Sloth  cccctg
B D            Rabbit  ======
B D        Guinea pig  ======
B D             Panda  ======
B D            Tenrec  ======
B D              Pika  ======
B D            Medaka  ======
B D     X. tropicalis  ======
B D          Platypus  ======
B D            Turkey  ======
B D        Coelacanth  ======
B D   Tasmanian devil  ======
B D           Opossum  ======
B D            Lizard  ======
B D        Budgerigar  ======
B D       Zebra finch  ======
B D           Chicken  ======
B D    Painted turtle  ======
B D             Shrew  ======
B D         Armadillo  ======
B D               Cat  ======
B D       Mouse lemur  ======
B D          Hedgehog  ======
B D      Kangaroo rat  ======

Inserts between block 19 and 20 in window
B D            Human 20bp
B D            Chimp 20bp
B D          Gorilla 20bp
B D        Orangutan 20bp
B D           Gibbon 20bp
B D           Rhesus 20bp
B D           Baboon 20bp
B D         Marmoset 20bp
B D  Squirrel monkey 20bp
B D          Tarsier 20bp
B D         Bushbaby 21bp
B D       Tree shrew 17bp
B D              Pig 5bp
B D           Alpaca 5bp
B D          Dolphin 5bp
B D            Sheep 5bp
B D              Cow 5bp
B D              Dog 5bp
B D            Horse 5bp
  D Little brown bat 5bp
B D          Megabat 5bp

Alignment block 20 of 386 in window, 56746712 - 56746724, 13 bps 
B D             Mouse  -------------------acccttgactcaa
B D               Rat  -------------------actct--actcag
B D    Naked mole-rat  -------------------atcctttgcttgg
B D          Squirrel  -------------------atactctgcttgg
B D            Rabbit  -------------------atcctccgcatgg
B D             Human  -------------------acactcttggtgg
B D             Chimp  -------------------acattcttggtgg
B D           Gorilla  -------------------acactcttggtgg
B D         Orangutan  -------------------acactcttggtgg
B D            Gibbon  -------------------acactcttggtgg
B D            Rhesus  -------------------acactcttggtgg
B D            Baboon  -------------------acactcttggtgg
B D          Marmoset  -------------------acacttttggtgg
B D   Squirrel monkey  -------------------actctcttggtgg
B D           Tarsier  -------------------acactctgtgtgg
B D          Bushbaby  -------------------atattctgtgtgg
B D        Tree shrew  -----------------------tactgtcag
B D               Pig  -------------------atactcca-----
B D            Alpaca  -------------------atactgta-----
B D           Dolphin  -------------------atactctg-----
B D             Sheep  -------------------atactctg-----
B D               Cow  -------------------atactctg-----
B D               Dog  -------------------acatgcca-----
B D             Horse  -------------------agactcca-----
  D  Little brown bat  -------------------caactcca-----
B D           Megabat  -------------------agactcca-----
B D          Elephant  actccaagtccatggttttatacactgttcag
B D        Rock hyrax  actccaagtccatgctttcatatactgtttag
B D           Manatee  actctaagtccatgcttttatacactgttcat
B D             Sloth  actctaagttcatgcttttatacattacttac
B D        Guinea pig  ================================
B D             Panda  ================================
B D            Tenrec  ================================
B D              Pika  ================================
B D            Medaka  ================================
B D     X. tropicalis  ================================
B D          Platypus  ================================
B D            Turkey  ================================
B D        Coelacanth  ================================
B D   Tasmanian devil  ================================
B D           Opossum  ================================
B D            Lizard  ================================
B D        Budgerigar  ================================
B D       Zebra finch  ================================
B D           Chicken  ================================
B D    Painted turtle  ================================
B D             Shrew  ================================
B D         Armadillo  ================================
B D               Cat  ================================
B D       Mouse lemur  ================================
B D          Hedgehog  ================================
B D      Kangaroo rat  ================================

Inserts between block 20 and 21 in window
B D              Pig 5bp
B D           Alpaca 5bp
B D          Dolphin 5bp
B D            Sheep 5bp
B D              Cow 5bp
B D              Dog 24bp
B D            Horse 26bp
  D Little brown bat 26bp
B D          Megabat 26bp

Alignment block 21 of 386 in window, 56746725 - 56746791, 67 bps 
B D             Mouse  ttctggcatcctaa------tgagttaggttgcttttcttactgaccctataaaattggtggcaggcacc
B D               Rat  t-ctgtcatcctaa------cgtgttaggctgcttctctcacccaccctata------------------
B D    Naked mole-rat  ttcctcaatcctaa------tatagttgattgcttctttcaacaaccctgtcagatgagcagcaggtact
B D          Squirrel  ttctgtcatactga------catatgtgattgcttctttcaacaaccctgtaaggtgggcagtaggtact
B D            Rabbit  ttctgctatcctaa------cacgtttgatcgcttctctcaacaatcctgtagactggtcagcaggcact
B D              Pika  tcctgctatcctaa------cacatttgtttgcttttctccacaactc--------agtcagtaggtact
B D             Human  ttctgccatcctaa------catatctgattgcttctctcagcaaccttgtaatgtgggcagctggta--
B D             Chimp  ttctgccaacctaa------catatctgattgcttctctcagcaaccttgtaatgtgggcagctggta--
B D           Gorilla  ttctgccatcctaa------catatctgattgcttctctcagcaaccttgtaatgtgggcagctggta--
B D         Orangutan  ttctgccatcctaa------catatctgattgcttctctcagcaaccttgtaaggtgggcagctggta--
B D            Gibbon  ttctgccatcctaa------catatctgattgcttctctcagcaaccttgtaaggtgggcagctggga--
B D            Rhesus  ttctgccatcctaa------catatctgattgcttctctcagcaaccttgtaaggtaggcagctggta--
B D            Baboon  ttctgccatcctaa------catatctgattgcttctctcagcaaccttgtaaggtaggcagctggta--
B D          Marmoset  ttctgccatcctaa------catatctgattgcttctctccgcaaccttgtaaggtagacagctggcg--
B D   Squirrel monkey  ttctgccatcctaa------catatctgattgcttctctcaacaaccttgtaaggtagacagctggtg--
B D           Tarsier  ttctgctatcctag------aatatc-aattgtttctttcaacaaccctata--gtgggctgcaggta--
B D          Bushbaby  tcctgccatcctaa------tgtgtctgactggttatctcaacaaccccgtgaactgggcagcaggta--
B D        Tree shrew  atttgccaccctaa------catatctgatttcttctctcaacaaggttgcaaggtgggtagcaggtg--
B D               Pig  ttctatcgtcctaa------catatctgattgcctctctccacaacc-tgcaaggtgggtagcaggta--
B D            Alpaca  ttctgccatcc-aa------catacctgattgtctctctcaacaatc-tgcaaggtgggagacaggta--
B D           Dolphin  ttctgccatcctat------catatatgattgcctctctccacaacc-tgtaatgtggacagcaggta--
B D             Sheep  ttttgtcttctgaa------catatccgggtgcccctcttaacaacc-tgtaagatgggcagcaggta--
B D               Cow  ttttgtcatctgaa------catatctggttgcccctcttaacaatc-tgtaagatgggcagcaggta--
B D               Dog  ttttgccatcctaa------cacacctgatcatttttctcag---tcttgtaatgtgggcggcaggta--
B D             Panda  ttttgccatcctaa------catacctgattgctcttctcaa---tcttgtaaggtgggcagcgggta--
B D             Horse  ttctgccatcctaa------cttatctaactgcttctctcagcaaccctgtaaggt-ggcggaaggta--
  D  Little brown bat  atttgccatcgtag------catatatgatttct--tctaaaaaaccctgtaaggtgggaagtgggta--
B D           Megabat  tcctgtcatcctag------catatatgattgcttctctcaacagccctgtaaggtgggcagcactta--
B D          Elephant  ttctgccatcttaa-agcaatttatctgattgtttctttcagcagccctggaaggtagg-------cg--
B D        Rock hyrax  ttctgcaatcttaagagcaatttagctgattgtttccctcagcagcactggaaggtaggcagcagaca--
B D           Manatee  ttctgtcgtcttaa-agtaatttatctgattgtttctctctgcagccctggaaggtgggcagcaggtg--
B D             Sloth  ttctgaaatcctaa---cagtttatctgattgcttctctcaacagccctgtaacatgagcagcgtgta--
B D        Guinea pig  ======================================================================
B D            Tenrec  ======================================================================
B D            Medaka  ======================================================================
B D     X. tropicalis  ======================================================================
B D          Platypus  ======================================================================
B D            Turkey  ======================================================================
B D        Coelacanth  ======================================================================
B D   Tasmanian devil  ======================================================================
B D           Opossum  ======================================================================
B D            Lizard  ======================================================================
B D        Budgerigar  ======================================================================
B D       Zebra finch  ======================================================================
B D           Chicken  ======================================================================
B D    Painted turtle  ======================================================================
B D             Shrew  ======================================================================
B D         Armadillo  ======================================================================
B D               Cat  ======================================================================
B D       Mouse lemur  ======================================================================
B D          Hedgehog  ======================================================================
B D      Kangaroo rat  ======================================================================

                Mouse  cta-----
                  Rat  --------
       Naked mole-rat  aca-----
             Squirrel  gta-----
               Rabbit  gta-----
                 Pika  atg-----
                Human  --------
                Chimp  --------
              Gorilla  --------
            Orangutan  --------
               Gibbon  --------
               Rhesus  --------
               Baboon  --------
             Marmoset  --------
      Squirrel monkey  --------
              Tarsier  --------
             Bushbaby  --------
           Tree shrew  --------
                  Pig  --------
               Alpaca  --------
              Dolphin  --------
                Sheep  --------
                  Cow  --------
                  Dog  --------
                Panda  --------
                Horse  --------
     Little brown bat  --------
              Megabat  --------
             Elephant  ---tagtt
           Rock hyrax  ---tagtc
              Manatee  ---taatc
                Sloth  ---tattt
           Guinea pig  ========
               Tenrec  ========
               Medaka  ========
        X. tropicalis  ========
             Platypus  ========
               Turkey  ========
           Coelacanth  ========
      Tasmanian devil  ========
              Opossum  ========
               Lizard  ========
           Budgerigar  ========
          Zebra finch  ========
              Chicken  ========
       Painted turtle  ========
                Shrew  ========
            Armadillo  ========
                  Cat  ========
          Mouse lemur  ========
             Hedgehog  ========
         Kangaroo rat  ========

Alignment block 22 of 386 in window, 56746792 - 56746824, 33 bps 
B D             Mouse  tact----at---c---a--gtttttaagagagaggaccaagtc--t
B D      Kangaroo rat  tatc----ct---c---a--tttgatagatgaggacactaaggc--t
B D    Naked mole-rat  tatt----ctgtat---a--ttttctgagtaaggaaaccaagga--g
B D          Squirrel  tatt----ct---a---a--ttgtttgtgttaggaaacaaagga--t
B D            Rabbit  tatt----cc---t---a--tttttcaggtaaggaaa-taagga--t
B D              Pika  catt----ct---t---a--cttttcaggtaaggaaaccaagga--t
B D             Human  ta-t----ct---c---a--tttttcaggtgaggaaaccaaaga--t
B D             Chimp  ta-t----ct---c---a--tttttcaggtgaggaaaccaaaga--t
B D           Gorilla  ta-t----ct---c---a--tttttcaggtgaggaaaccaaaga--c
B D         Orangutan  ta-t----ct---c---a--tttttcaggtgaggaaaccaaaga--t
B D            Gibbon  ta-t----ct---c---a--tttttcaggtgaggaaaccaaaga--t
B D            Rhesus  ta-t----ct---c---a--tttttcaggtgaggaaatcaagga--t
B D            Baboon  ta-t----ct---c---a--tttttcaggtgaggaaatcaagga--t
B D          Marmoset  ta-t----ct---c---a--tttttcaggtgaggaaacaaagga--t
B D   Squirrel monkey  ta-t----ct---c---a--tttttcaggtgaggaaaacaagga--t
B D           Tarsier  tatt----ct---c---atttttttcaggtgagaaaaacagcaa--t
B D          Bushbaby  tatt----ct---c---a--tttttcaggcaaggaaaccaaaga--c
B D        Tree shrew  ca-ttctcct---c---a--attttcaggtgaggaaatcaaaggatt
B D               Pig  tatt----ct---t---a--ttttagaggcgaggaaaccaagga--t
B D            Alpaca  tatt----ct---c---a--ttttac------------caagga--t
B D           Dolphin  tatt----at---tctca--ttttacaggtgaggaaaccaagga--t
B D             Sheep  tatt----ct---ctata--ttttacaggtga-gaaagcaagga--c
B D               Cow  tatt----ct---ctgta--ttttacaggtga-gaaaccaagga--t
B D               Dog  tagt----tt---cctta--ttttgcaggtcagaaaaccaagaa--t
B D             Panda  tatt----tt---cctta--ttttgcaggtgagaaaaccaagga--t
B D             Horse  tacg----tt---c---a--ttttgcaggtgaggaaactaagga--t
  D  Little brown bat  tatt----------ctaa--tttttcaggtaaggagaccaagga--t
B D           Megabat  tatt----ct---cctca--ttttgca-gtgaggaaaccaagga--t
B D          Elephant  --tc----ct---t---a--ttttgt--gtgaaaaaactgagga--t
B D        Rock hyrax  --tc----ct---t---a--ttttgcagatgagaaaactataga--t
B D           Manatee  --tc----ct---t---a--ttttgcaggtgagaaaactgaaaa--t
B D             Sloth  --tc----ct---c---a--ttttgtgggtgaggaaaccaagga--t
B D        Guinea pig  ===============================================
B D            Tenrec  ===============================================
B D            Medaka  ===============================================
B D     X. tropicalis  ===============================================
B D          Platypus  ===============================================
B D            Turkey  ===============================================
B D        Coelacanth  ===============================================
B D   Tasmanian devil  ===============================================
B D           Opossum  ===============================================
B D            Lizard  ===============================================
B D        Budgerigar  ===============================================
B D       Zebra finch  ===============================================
B D           Chicken  ===============================================
B D    Painted turtle  ===============================================
B D             Shrew  ===============================================
B D         Armadillo  ===============================================
B D               Cat  ===============================================
B D       Mouse lemur  ===============================================
B D          Hedgehog  ===============================================
B D               Rat  -----------------------------------------------

Alignment block 23 of 386 in window, 56746825 - 56746891, 67 bps 
B D             Mouse  aatgaagt--------------------------------------------------------------
B D               Rat  ---gagga--------------------------------------------------------------
B D      Kangaroo rat  ca-gaagt--------------------------------------------------------------
B D    Naked mole-rat  ---gatga--------------------------------------------------------------
B D        Guinea pig  aaaaaaaa--------------------------------------------------------------
B D          Squirrel  agttaagc--------------------------------------------------------------
B D            Rabbit  ----atatacatatgtgtatgtatgtgtgtatatatttacatatatgtgtatatacagatatatatatat
B D              Pika  ----agtt--------------------------------------------------------------
B D             Human  tgttaggc--------------------------------------------------------------
B D             Chimp  tgttaggc--------------------------------------------------------------
B D           Gorilla  tgttaggc--------------------------------------------------------------
B D         Orangutan  tgttaagc--------------------------------------------------------------
B D            Gibbon  tgttaagc--------------------------------------------------------------
B D            Rhesus  tgttaagc--------------------------------------------------------------
B D            Baboon  tgttaagc--------------------------------------------------------------
B D          Marmoset  tgttaagc--------------------------------------------------------------
B D   Squirrel monkey  tgttaagc--------------------------------------------------------------
B D           Tarsier  tgttaggt--------------------------------------------------------------
B D          Bushbaby  tgctatgc--------------------------------------------------------------
B D        Tree shrew  tgttaagt--------------------------------------------------------------
B D               Pig  tgttaaat--------------------------------------------------------------
B D            Alpaca  ta---agt--------------------------------------------------------------
B D           Dolphin  ta---agt--------------------------------------------------------------
B D             Sheep  tg---aat--------------------------------------------------------------
B D               Cow  tg---agt--------------------------------------------------------------
B D               Dog  tgttaagt--------------------------------------------------------------
B D             Panda  tgttaagt--------------------------------------------------------------
B D             Horse  tgttaagt--------------------------------------------------------------
  D  Little brown bat  tgttaagt--------------------------------------------------------------
B D           Megabat  tattaagt--------------------------------------------------------------
B D          Elephant  tttaaaat--------------------------------------------------------------
B D        Rock hyrax  tttaatgt--------------------------------------------------------------
B D           Manatee  tttaacat--------------------------------------------------------------
B D             Sloth  tgataagt--------------------------------------------------------------
B D            Tenrec  ======================================================================
B D            Medaka  ======================================================================
B D     X. tropicalis  ======================================================================
B D          Platypus  ======================================================================
B D            Turkey  ======================================================================
B D        Coelacanth  ======================================================================
B D   Tasmanian devil  ======================================================================
B D           Opossum  ======================================================================
B D            Lizard  ======================================================================
B D        Budgerigar  ======================================================================
B D       Zebra finch  ======================================================================
B D           Chicken  ======================================================================
B D    Painted turtle  ======================================================================
B D             Shrew  ======================================================================
B D         Armadillo  ======================================================================
B D               Cat  ======================================================================
B D       Mouse lemur  ======================================================================
B D          Hedgehog  ======================================================================

                Mouse  ----------------------agtgttcctaaggtaatg----ctgctca-caaatagcttgaccagaa
                  Rat  ----------------------agtgttcctaaggtaatgagtgctgctaa-caaaaggcttgaccagaa
         Kangaroo rat  ----------------------gaagttacttagccaaga----ttacaaagtgaatggtagtgtcagca
       Naked mole-rat  ----------------------aatgtttctcaggtaaaa--tgctgttga-tagatggtttaaccaaaa
           Guinea pig  ----------------------aatgtttcttgggtaaaa--tgatgctga-taaatggcttaaccagaa
             Squirrel  ----------------------aatgttccc-aggtaaaa--tgctgctga-taaatggc-------aga
               Rabbit  atatatatatatatatatataaaatgttcctaaggtaaaa--tgctgctga-tgaatggcttaaccagaa
                 Pika  ----------------------aatgatatcaaggcaaaa--tcctgctaa-tagctggcttaaccagaa
                Human  ----------------------aacatgcctaagataaaa--tgctgctga-taaatggcttaagcagaa
                Chimp  ----------------------aacatgcctaagataaaa--tgctgctga-taaatggcttaagcagaa
              Gorilla  ----------------------aacatgcctaagaaaaaa--tgctactga-taaatggcttaagcagaa
            Orangutan  ----------------------tacatgcctaagataaaa--tgctgctga-taaatgggttaagcagaa
               Gibbon  ----------------------aacatgcctgagataaaa--tgctgctga-taaatggcttaagcagaa
               Rhesus  ----------------------aacatgcctaagataaaa--tgctgctga-taaatggcttaagcagaa
               Baboon  ----------------------aacatgcctaagataaaa--tgctgctga-taaatggcttaagcagaa
             Marmoset  ----------------------aacatgcctaagataaaa--tgctgctaa-taaatggcttaagcagaa
      Squirrel monkey  ----------------------aacatgcctaagataaaa--tgctgctaa-taaatggcttaagcagaa
              Tarsier  ----------------------aa-----------------------------------------ctgaa
             Bushbaby  ----------------------acctttcctaaggcaaaa--agctactga-caaatggcttaatcggaa
           Tree shrew  ----------------------aacatttctaaagt-aaa--tgctgctga-taaatggcttcaccagaa
                  Pig  ----------------------aatactcctaaggtgaaa----gtactgc-taagtggtgtcagtagaa
               Alpaca  ----------------------aatattcctgtggtaaaa----attctgg-taaatggcttaagcagaa
              Dolphin  ----------------------aatattcctaaggggaaa----gtactgg-aaaatggcttaagcagaa
                Sheep  ----------------------aatatt-ttaaggggaaa----ggactga-aaaatggcttaagcagaa
                  Cow  ----------------------aatatt-ttaaggggaaa----agactga-aaaatggcttaagcagaa
                  Dog  ----------------------agcagtcctaatgtaaaa----atggtgg-taaatagcttaaccagaa
                Panda  ----------------------agcaggcctaaagtagaa----atgctgc-taaacagcttcacgaaaa
                Horse  ---------------------aagtattcctaaggcaaaa----acactga-taaatggcctaaccacaa
     Little brown bat  ----------------------aatattcctaaagtgaaa----atactgg-taaatggcttaaccagaa
              Megabat  ----------------------aatactcccaaagtgaaa----acactgg-taaatggcttcaccagac
             Elephant  ----------------------gacgttcccaagggaaaa----ggcctgg-taaatggcttagccagaa
           Rock hyrax  ----------------------gacatttccagagaaaaa----gg-ctgg-tacatggcttaggtagaa
              Manatee  ----------------------gacattcccaagggaaaa----agcctgg-taaatggcttagccagaa
                Sloth  ----------------------aatattcccaaggtaaac------cctgg-taaatggcctgaccagaa
               Tenrec  ======================================================================
               Medaka  ======================================================================
        X. tropicalis  ======================================================================
             Platypus  ======================================================================
               Turkey  ======================================================================
           Coelacanth  ======================================================================
      Tasmanian devil  ======================================================================
              Opossum  ======================================================================
               Lizard  ======================================================================
           Budgerigar  ======================================================================
          Zebra finch  ======================================================================
              Chicken  ======================================================================
       Painted turtle  ======================================================================
                Shrew  ======================================================================
            Armadillo  ======================================================================
                  Cat  ======================================================================
          Mouse lemur  ======================================================================
             Hedgehog  ======================================================================

                Mouse  tttgcatcta----agtgtt----
                  Rat  ctt---------------------
         Kangaroo rat  ctcacactga---gagctgt----
       Naked mole-rat  ttctgcttcc---aattcag----
           Guinea pig  ctctgcttcc---aatttag----
             Squirrel  ttctgcatct---aatcaag----
               Rabbit  aactgcaact---cgtcca-----
                 Pika  tatttcattt---agttcag----
                Human  ttctgcatct---aatccaa----
                Chimp  ttctgcatct---aatccaa----
              Gorilla  tactgcatct---aatccaa----
            Orangutan  ttctgcatct---aatccaa----
               Gibbon  ttctgcatct---catccaa----
               Rhesus  ctctgcatct---aatccaa----
               Baboon  ctctgcatct---aacccaa----
             Marmoset  ttctacatct---aattcaa----
      Squirrel monkey  ttctgcatct---aatccaa----
              Tarsier  ttctgcctct---aatt--g----
             Bushbaby  ttgtgcatct---aatccag----
           Tree shrew  ttctccccttatcaacccag----
                  Pig  ttctacatct---catccag----
               Alpaca  ttctgcctct---aactcag----
              Dolphin  ttctacatct---catccag----
                Sheep  ttctacatct---caaccaa----
                  Cow  ttctacatct---caaccaa----
                  Dog  ttctgcatct---aagccag----
                Panda  ttctgcctct---gatccag----
                Horse  ttctgcatct---aatccag----
     Little brown bat  ttctgcttct---aacccag----
              Megabat  ttctgcatca---aattcgg----
             Elephant  ttctacatct---aatccagtgtc
           Rock hyrax  ttctgcatct---aatctagtgtc
              Manatee  ttctgtatct---aatccagtgtc
                Sloth  gtttgcatct---aatccagtgtt
               Tenrec  ========================
               Medaka  ========================
        X. tropicalis  ========================
             Platypus  ========================
               Turkey  ========================
           Coelacanth  ========================
      Tasmanian devil  ========================
              Opossum  ========================
               Lizard  ========================
           Budgerigar  ========================
          Zebra finch  ========================
              Chicken  ========================
       Painted turtle  ========================
                Shrew  ========================
            Armadillo  ========================
                  Cat  ========================
          Mouse lemur  ========================
             Hedgehog  ========================

Inserts between block 23 and 24 in window
B D              Pig 5bp
B D           Alpaca 5bp
B D          Dolphin 5bp
B D            Sheep 5bp
B D              Cow 5bp
B D              Dog 5bp
B D            Panda 5bp
B D            Horse 6bp
  D Little brown bat 5bp
B D          Megabat 5bp

Alignment block 24 of 386 in window, 56746892 - 56746976, 85 bps 
B D             Mouse  ttttttttccttcatgc--tta----tccttgta------ataggtgatatga-------ttttcagggc
B D               Rat  ----tttctctccgtgc--tta----tccttgta------ataggtgatgtga-------ttttcagggc
B D      Kangaroo rat  ggacttccaatttgtgctttta----tctttttattatacataggtgataaga-------tttttggact
B D    Naked mole-rat  tgttgttcttttcacat--taa----ttgttatc-----cataggtgggaaga-------ttttcagagt
B D        Guinea pig  tgttgttcttttcacat--taa----ttgttgta-----cacaggtaaaaaga----tttttttcagagt
B D          Squirrel  t---gttcttttcacac--tcattttttgttata-----tacaggtgacaaga-------ttttcagagt
B D            Rabbit  --ctgctccttccttac--tca-tccttgttata-----catagggcatgaga-----ttttttcagagt
B D              Pika  tggtgttctctccatat--tca-tcctggttata-----cacagggcatgaga-------ttttcagagt
B D             Human  tgttgttctttacacac--tca-ttcttattgta-----cataggtaataaga-------gtttcagagt
B D             Chimp  tgttgttctttacacac--tca-ttcttattgta-----cataggtaataaga-------gtttcacagt
B D           Gorilla  tgttgttctttacacac--tca-ttcttattgta-----cataggtaataaga-------gtttcagagt
B D         Orangutan  tgcttttctttacacac--tca-ttcttattgta-----cataggtaataaga-------gtttcagagt
B D            Gibbon  tgttgttctttacacac--tca-ttcttattgta-----cataggtaataaga-------gtttcagagt
B D            Rhesus  tgttgttctttacacac--tca-ttcttattata-----cataggtaataaga-------gtttcagagt
B D            Baboon  tgttgttctttacacac--tca-ttcttattata-----cataggtaataaga-------gtttcagagt
B D          Marmoset  tgttgttttttccacac--tt-----------------------gtaataaga-------attttagagt
B D   Squirrel monkey  tgttgttctttccatac--tc-----------------------gtaataaga-------gttttagagt
B D           Tarsier  tgtttttctttccatgg--tca-ttcttgttata-----cataggtgataagatttttttttttcacaat
B D          Bushbaby  tgctgtcatttccaagc--tca-tttttgttatg-----cacaggggataaga-------ttttcagagt
B D        Tree shrew  tgttgctttctccacac--ttg-gtcttgctctg-----cacatgtgacacga-------ttttcatagg
B D               Pig  ccttcattctcgttgac--tta-ttcttgttgta-----tacatgttgtaaga-------ttttcagagt
B D            Alpaca  tt------ctcgttgac--tca-tttttgttata-----catatgcagtaaga-------ttttcagagt
B D           Dolphin  ctctcatgcttgttgac--tca-ttcttgttata-----cacatgctgtaaga-------ttttcagagt
B D             Sheep  ctgtcatccttgctggc--tca-ttcttgttaca-----tatatgctgtaaga-------ttttcagagt
B D               Cow  ctgtcatccttgttgac--tca-ttcttgttatg-----catatgctgtaaga-------ttttcagagt
B D               Dog  ttctcattc-tgtggac--tca-tttcttttcta-----catatatggtaaga-------ttttcagagt
B D             Panda  ttctcattc-tgtggac--tca-ttcttgttctg-----catatgtggtaaga-------gttccagagg
B D             Horse  ttctcattcttgtagac--tca-ttcttgttata-----cacgtgaagcaaga-------ttttcagagt
  D  Little brown bat  ttcacattc-tgtggac--tca-ttcttgttata-----catacgcagtaaga-------ttttcagagc
B D           Megabat  ttcacattc-tgtggac--tca-ttcttgttata-----aacgtgtggtaaga-------ttttcagaat
B D             Shrew  ttctatttcttatagat--tta-ttcttattata-----catatgccataaaa-------ctttcagagt
B D          Elephant  -------ctctccacat--tga-ttcttgctatg-----ta--gtcagtaaag-------ttttcagaat
B D        Rock hyrax  -------ctttccacac--tga-ttcttgttaaa-----ta--gtcagtaaga-------ttttcaaagt
B D           Manatee  -------ttttccacat--tga-ttcttgttata-----ca--gtcagtaaga-------ttttcggagt
B D             Sloth  -------cttttcacac--tga-ttcttgttata-----tattggcagtcaga-------ttttcagagt
B D            Tenrec  ======================================================================
B D            Medaka  ======================================================================
B D     X. tropicalis  ======================================================================
B D          Platypus  ======================================================================
B D            Turkey  ======================================================================
B D        Coelacanth  ======================================================================
B D   Tasmanian devil  ======================================================================
B D           Opossum  ======================================================================
B D            Lizard  ======================================================================
B D        Budgerigar  ======================================================================
B D       Zebra finch  ======================================================================
B D           Chicken  ======================================================================
B D    Painted turtle  ======================================================================
B D         Armadillo  ======================================================================
B D               Cat  ======================================================================
B D       Mouse lemur  ======================================================================
B D          Hedgehog  ======================================================================

                Mouse  tcactattccaaat---caccacaggcagc-agat----a-ca
                  Rat  tcactgttccaa-t---caccacaggcagc-agac----a-ca
         Kangaroo rat  ttactcatccaa-t---tgata-aaataac-agat-------a
       Naked mole-rat  ttgataatccac-c---tgatacaggtaac-agata--ta-ca
           Guinea pig  ttgataatccct-c---tgatatagataat-agaca--ta-ta
             Squirrel  ttgataat-caa-t---cgaaagagctaac-agata--ca-ct
               Rabbit  ttgagagttcag-c---tgatatacataac-agatg--catta
                 Pika  ttgagggtccag-c---tgatat--ataac-aaata--ca-ta
                Human  ttgacaatccaa-c---tgatataagtaac-agatg--ca-ta
                Chimp  ttgacaatccaa-c---tgatgtaagtaac-agatg--ca-ta
              Gorilla  ttgacaatccaa-c---tgatgtaagtaac-agatg--ca-ta
            Orangutan  ctgacaatccaa-c---tgatataagtaac-agatg--ca-ta
               Gibbon  ttgacaatccaa-c---tgatacaagtaac-agatg--ca-ta
               Rhesus  ttgacaatccaa-c---tgatctaagtaac--gatg--aa-ta
               Baboon  ttgacaatccaa-c---tgatctaagtaac--gatg--aa-ta
             Marmoset  ttgataatccaa-c---c-atataagtaac-agatg--ca-ta
      Squirrel monkey  tttataatccaa-c---c-atataagtaa--agatg--ca-ta
              Tarsier  ttgataattcaa-c---tgatataggaaac-agata--aa-ta
             Bushbaby  ttgataatccaa-c---taagataggtaac-agat--------
           Tree shrew  ttgatagtccaa-c---tgataaggataagaaaata--tt-ta
                  Pig  ttgataatccaa-c---tgataaaggaaac-aggaaa-ta---
               Alpaca  ttgataatccaa-c---tgatataggtaac-agataataa---
              Dolphin  ttgataatccaa-c---tgatacaggtgac-agat---aa---
                Sheep  ttgctaatccaa-c---tgatgcaggtaat-agata--aa---
                  Cow  ttgctaatccaa-c---tgatgcaggtaat-agata--aa---
                  Dog  ttgataatccaa-c---taatacaggtaac-agata--ca---
                Panda  ctgataatccca-t---tgatacaggtaac-agcta--ca---
                Horse  ttgatgatccag-c---tgatacaggtgac-acaca-------
     Little brown bat  ctgataatcaaa-c---tcatacaggtaat-agata--ca---
              Megabat  ttgataatccga-c---ttat-taggtgac-agata--ca---
                Shrew  ttgacagcccaa-------agtgagttaac-atata--ta---
             Elephant  ttggtaatccag-c---taatatacataac-agata--ca---
           Rock hyrax  ttgatactccaa-ctaataatacacctaac-agata--ca---
              Manatee  ttgataatccaa-c---taatatacttaac-agata--ca---
                Sloth  ttcataatccaa-c---tgatacacaaaat-agata--tg---
               Tenrec  ===========================================
               Medaka  ===========================================
        X. tropicalis  ===========================================
             Platypus  ===========================================
               Turkey  ===========================================
           Coelacanth  ===========================================
      Tasmanian devil  ===========================================
              Opossum  ===========================================
               Lizard  ===========================================
           Budgerigar  ===========================================
          Zebra finch  ===========================================
              Chicken  ===========================================
       Painted turtle  ===========================================
            Armadillo  ===========================================
                  Cat  ===========================================
          Mouse lemur  ===========================================
             Hedgehog  ===========================================

Inserts between block 24 and 25 in window
B D              Dog 4bp
B D            Panda 65bp
B D            Horse 5bp
  D Little brown bat 4bp
B D          Megabat 4bp

Alignment block 25 of 386 in window, 56746977 - 56746995, 19 bps 
B D             Mouse  --ataccctatgtaattt------ttt
B D               Rat  --aaaacgtacataattt------ttc
B D      Kangaroo rat  --atactataaaca-----------tg
B D    Naked mole-rat  --gtagtataaata---t------ttt
B D        Guinea pig  --atagtataaata---ta-----tct
B D          Squirrel  --atagtacaaatg---ta-----ttt
B D            Rabbit  --ataatacacatg---ta-ttttttt
B D              Pika  --atggcacatgta---ta-ctttttt
B D             Human  --atagtacaaata---ta-----ttt
B D             Chimp  --atagtacaaata---ta-----ttt
B D           Gorilla  --atagtacaaata---ta----tttt
B D         Orangutan  --atagtacaaata---ta-----ttt
B D            Gibbon  --atagtacaaata---ta-----ttt
B D            Rhesus  --atagtacaaata---ta-----ttt
B D            Baboon  --atagtacaaata---ta-----ttt
B D          Marmoset  --atagtacaaata---catttttttt
B D   Squirrel monkey  --atagtacaaata---ca--tttttt
B D           Tarsier  --atagtacaaata---ta-----att
B D          Bushbaby  ------------------a--------
B D        Tree shrew  --atagaacaaatg---ca-----ttt
B D               Pig  -----atatgaata---ta----tttt
B D            Alpaca  -----atacagata---ta----tttt
B D           Dolphin  -----atacaaata---ta-----ttt
B D             Sheep  -----atacaaata---ta-----tat
B D               Cow  -----atacaaata---tg-----tat
B D               Dog  ----gagccaaata---ta-----ttt
B D             Horse  ----aacacaaata---ta-----gtt
  D  Little brown bat  ----aacacaaata---ca-----ttt
B D           Megabat  ----a--acagata---ta-----ttt
B D             Shrew  ------ataaaata---ta-----tat
B D          Elephant  caatagcacaaatg---ta-----ttt
B D        Rock hyrax  caacagcacaaatg---ta-----ttt
B D           Manatee  caatagcacaaatg---ta-----ttt
B D             Sloth  taatagc--------------------
B D             Panda  ===========================
B D            Tenrec  ===========================
B D            Medaka  ===========================
B D     X. tropicalis  ===========================
B D          Platypus  ===========================
B D            Turkey  ===========================
B D        Coelacanth  ===========================
B D   Tasmanian devil  ===========================
B D           Opossum  ===========================
B D            Lizard  ===========================
B D        Budgerigar  ===========================
B D       Zebra finch  ===========================
B D           Chicken  ===========================
B D    Painted turtle  ===========================
B D         Armadillo  ===========================
B D               Cat  ===========================
B D       Mouse lemur  ===========================
B D          Hedgehog  ===========================

Inserts between block 25 and 26 in window
B D              Dog 4bp
B D            Horse 38bp
  D Little brown bat 49bp
B D          Megabat 4bp
B D            Shrew 2bp

Alignment block 26 of 386 in window, 56746996 - 56746996, 1 bps 
B D             Mouse  t
B D               Rat  t
B D      Kangaroo rat  g
B D    Naked mole-rat  t
B D        Guinea pig  t
B D          Squirrel  t
B D            Rabbit  t
B D              Pika  t
B D             Human  t
B D             Chimp  t
B D           Gorilla  t
B D         Orangutan  t
B D            Gibbon  t
B D            Rhesus  t
B D            Baboon  t
B D          Marmoset  t
B D   Squirrel monkey  t
B D           Tarsier  t
B D        Tree shrew  t
B D               Pig  t
B D            Alpaca  t
B D           Dolphin  t
B D             Sheep  t
B D               Cow  t
B D               Dog  t
B D             Shrew  c
B D          Elephant  t
B D        Rock hyrax  t
B D           Manatee  t
B D          Bushbaby  -
B D             Horse  =
B D             Panda  =
B D            Tenrec  =
B D            Medaka  =
B D     X. tropicalis  =
B D          Platypus  =
B D            Turkey  =
B D        Coelacanth  =
B D   Tasmanian devil  =
B D           Opossum  =
B D            Lizard  =
B D        Budgerigar  =
B D       Zebra finch  =
B D           Chicken  =
B D    Painted turtle  =
  D  Little brown bat  =
B D             Sloth  -
B D         Armadillo  =
B D               Cat  =
B D       Mouse lemur  =
B D          Hedgehog  =
B D           Megabat  =

Inserts between block 26 and 27 in window
B D             Pika 8bp
B D              Dog 28bp

Alignment block 27 of 386 in window, 56746997 - 56746997, 1 bps 
B D             Mouse  t
B D               Rat  t
B D      Kangaroo rat  t
B D    Naked mole-rat  t
B D        Guinea pig  t
B D          Squirrel  t
B D            Rabbit  c
B D              Pika  t
B D             Human  t
B D             Chimp  t
B D           Gorilla  t
B D         Orangutan  t
B D            Gibbon  t
B D            Rhesus  t
B D            Baboon  t
B D          Marmoset  t
B D   Squirrel monkey  t
B D           Tarsier  t
B D        Tree shrew  t
B D               Pig  t
B D            Alpaca  t
B D           Dolphin  t
B D             Sheep  t
B D               Cow  t
B D             Shrew  t
B D          Elephant  t
B D        Rock hyrax  t
B D           Manatee  t
B D          Bushbaby  -
B D             Horse  =
B D             Panda  =
B D               Dog  =
B D            Tenrec  =
B D            Medaka  =
B D     X. tropicalis  =
B D          Platypus  =
B D            Turkey  =
B D        Coelacanth  =
B D   Tasmanian devil  =
B D           Opossum  =
B D            Lizard  =
B D        Budgerigar  =
B D       Zebra finch  =
B D           Chicken  =
B D    Painted turtle  =
  D  Little brown bat  =
B D             Sloth  -
B D         Armadillo  =
B D               Cat  =
B D       Mouse lemur  =
B D          Hedgehog  =
B D           Megabat  =

Alignment block 28 of 386 in window, 56746998 - 56747006, 9 bps 
B D             Mouse  catgaaagt
B D               Rat  cttgaaagt
B D      Kangaroo rat  ctggcaagt
B D    Naked mole-rat  ctagaaagt
B D        Guinea pig  ttggcaagt
B D          Squirrel  ttggcaagt
B D            Rabbit  ctggcaagt
B D              Pika  ttggtaagc
B D             Human  ctggcaaat
B D             Chimp  ctggcaaat
B D           Gorilla  ctggcaaat
B D         Orangutan  ctggcaaat
B D            Gibbon  -tggcaaat
B D            Rhesus  ctggcaaat
B D            Baboon  ctggcaaat
B D          Marmoset  ctagcaaat
B D   Squirrel monkey  ctagcaaat
B D           Tarsier  ctagcaagt
B D          Bushbaby  ---gcaagt
B D        Tree shrew  ctggcaaat
B D               Pig  ctgccaact
B D            Alpaca  ctggcaacc
B D           Dolphin  ctggcagct
B D             Sheep  ctggcaact
B D               Cow  ctggcaact
B D           Megabat  ctggcaact
B D             Shrew  --cacaact
B D          Elephant  ctggcaact
B D        Rock hyrax  ctggcaact
B D           Manatee  ctggcaact
B D             Horse  =========
B D             Panda  =========
B D               Dog  =========
B D            Tenrec  =========
B D            Medaka  =========
B D     X. tropicalis  =========
B D          Platypus  =========
B D            Turkey  =========
B D        Coelacanth  =========
B D   Tasmanian devil  =========
B D           Opossum  =========
B D            Lizard  =========
B D        Budgerigar  =========
B D       Zebra finch  =========
B D           Chicken  =========
B D    Painted turtle  =========
  D  Little brown bat  =========
B D             Sloth  ---------
B D         Armadillo  =========
B D               Cat  =========
B D       Mouse lemur  =========
B D          Hedgehog  =========

Inserts between block 28 and 29 in window
B D   Naked mole-rat 11bp
B D       Guinea pig 1bp

Alignment block 29 of 386 in window, 56747007 - 56747036, 30 bps 
B D             Mouse  tgaagttattatat----------------atat-atatatatatat------
B D               Rat  tggagtttt--------------------------------------------
B D      Kangaroo rat  tagagtcttaacat----------------a----------------------
B D        Guinea pig  tgggcttgatataa----------------agaa-aaaaac------------
B D          Squirrel  tggggccttgggat----------------aaag-aaa---------------
B D            Rabbit  tggggcattgggat----------------agag-gaaaac------------
B D              Pika  tggggc-ctggggt----------------aagg-gaaaac------------
B D             Human  ggaggccttgggat----------------aaag-aaaacc------------
B D             Chimp  ggaggccttgggat----------------aaag-aaaacc------------
B D           Gorilla  ggaggccttgggat----------------aaaa-aaaacc------------
B D         Orangutan  ggaggccttgggat----------------aaag-aaaacc------------
B D            Gibbon  ggaggccttgggat----------------aaag-aaaacc------------
B D            Rhesus  ggaggccttgggat----------------aaat-aaaacc------------
B D            Baboon  ggaggccttgggat----------------aaag-aaaacc------------
B D          Marmoset  ggagactttgggat----------------aaag-aaaaca------------
B D   Squirrel monkey  ggacactttgggat----------------aaag-aaaaca------------
B D           Tarsier  aggcgtcttgggct----------------aaagaaaaacc------------
B D          Bushbaby  tggggccttgggag----------------aaagaaaaacc------------
B D        Tree shrew  tggtgccttgggat----------------aaag-aaaaaa------------
B D               Pig  tatgg---tgagat----------------aaag-aaaaac------------
B D            Alpaca  tggggccttgagat----------------gaag-aaaaac------------
B D           Dolphin  tggggccttgagac----------------caag-aaaaac------------
B D             Sheep  tgggaccttgagat----------------aaag-aaaaat------------
B D               Cow  tgggaccttgagat----------------aaag-aaaaat------------
B D           Megabat  tggggcctcgagat----------------aaag-aaaaac------------
B D             Shrew  tagggcattgagat----------------aaag----aac------------
B D          Elephant  tggggtcttgaggt----------------aaag-gaaact------ctgtac
B D        Rock hyrax  tggagccttgagat----------------aaag-aaaaat------ccaaac
B D           Manatee  tggggctttgagagggaattgaatattcaaagaa-aaaact------ttgaac
B D             Sloth  -----ctttggatt----------------aaaa-aaaacc------ctgaac
B D             Horse  =====================================================
B D             Panda  =====================================================
B D               Dog  =====================================================
B D    Naked mole-rat  =====================================================
B D            Tenrec  =====================================================
B D            Medaka  =====================================================
B D     X. tropicalis  =====================================================
B D          Platypus  =====================================================
B D            Turkey  =====================================================
B D        Coelacanth  =====================================================
B D   Tasmanian devil  =====================================================
B D           Opossum  =====================================================
B D            Lizard  =====================================================
B D        Budgerigar  =====================================================
B D       Zebra finch  =====================================================
B D           Chicken  =====================================================
B D    Painted turtle  =====================================================
  D  Little brown bat  =====================================================
B D         Armadillo  =====================================================
B D               Cat  =====================================================
B D       Mouse lemur  =====================================================
B D          Hedgehog  =====================================================

Inserts between block 29 and 30 in window
B D           Rabbit 6bp
B D             Pika 6bp
B D            Human 5bp
B D            Chimp 5bp
B D          Gorilla 5bp
B D        Orangutan 5bp
B D           Gibbon 5bp
B D           Rhesus 5bp
B D           Baboon 5bp
B D         Marmoset 5bp
B D  Squirrel monkey 5bp
B D          Tarsier 5bp
B D         Bushbaby 5bp
B D       Tree shrew 5bp
B D              Pig 6bp
B D           Alpaca 6bp
B D          Dolphin 6bp
B D            Sheep 6bp
B D              Cow 6bp
B D          Megabat 6bp
B D            Shrew 10bp

Alignment block 30 of 386 in window, 56747037 - 56747045, 9 bps 
B D             Mouse  atatatata
B D               Rat  ----gtata
B D      Kangaroo rat  ----agata
B D    Naked mole-rat  ----ataaa
B D            Rabbit  =========
B D        Guinea pig  ---------
B D          Bushbaby  =========
B D               Cow  =========
B D          Elephant  ---------
B D           Manatee  ---------
B D          Squirrel  ---------
B D            Rhesus  =========
B D         Orangutan  =========
B D   Squirrel monkey  =========
B D               Pig  =========
B D             Horse  =========
B D             Panda  =========
B D               Dog  =========
B D          Marmoset  =========
B D            Gibbon  =========
B D           Gorilla  =========
B D             Chimp  =========
B D             Human  =========
B D           Tarsier  =========
B D            Tenrec  =========
B D              Pika  =========
B D            Alpaca  =========
B D        Tree shrew  =========
B D             Sheep  =========
B D            Medaka  =========
B D     X. tropicalis  =========
B D          Platypus  =========
B D            Turkey  =========
B D        Coelacanth  =========
B D   Tasmanian devil  =========
B D           Opossum  =========
B D            Lizard  =========
B D        Budgerigar  =========
B D       Zebra finch  =========
B D           Chicken  =========
B D    Painted turtle  =========
B D             Shrew  =========
  D  Little brown bat  =========
B D            Baboon  =========
B D             Sloth  ---------
B D         Armadillo  =========
B D               Cat  =========
B D       Mouse lemur  =========
B D          Hedgehog  =========
B D        Rock hyrax  ---------
B D           Megabat  =========
B D           Dolphin  =========

Alignment block 31 of 386 in window, 56747046 - 56747055, 10 bps 
B D             Mouse  tatatatata
B D               Rat  aaaaaaattt
B D      Kangaroo rat  aagaaaaaca
B D    Naked mole-rat  gaaaaaacca
B D        Guinea pig  --------ta
B D               Dog  gagttcttt-
B D            Rabbit  ==========
B D          Bushbaby  ==========
B D               Cow  ==========
B D          Elephant  ----------
B D           Manatee  ----------
B D          Squirrel  ----------
B D            Rhesus  ==========
B D         Orangutan  ==========
B D   Squirrel monkey  ==========
B D               Pig  ==========
B D             Horse  ==========
B D             Panda  ==========
B D          Marmoset  ==========
B D            Gibbon  ==========
B D           Gorilla  ==========
B D             Chimp  ==========
B D             Human  ==========
B D           Tarsier  ==========
B D            Tenrec  ==========
B D              Pika  ==========
B D            Alpaca  ==========
B D        Tree shrew  ==========
B D             Sheep  ==========
B D            Medaka  ==========
B D     X. tropicalis  ==========
B D          Platypus  ==========
B D            Turkey  ==========
B D        Coelacanth  ==========
B D   Tasmanian devil  ==========
B D           Opossum  ==========
B D            Lizard  ==========
B D        Budgerigar  ==========
B D       Zebra finch  ==========
B D           Chicken  ==========
B D    Painted turtle  ==========
B D             Shrew  ==========
  D  Little brown bat  ==========
B D            Baboon  ==========
B D             Sloth  ----------
B D         Armadillo  ==========
B D               Cat  ==========
B D       Mouse lemur  ==========
B D          Hedgehog  ==========
B D        Rock hyrax  ----------
B D           Megabat  ==========
B D           Dolphin  ==========

Inserts between block 31 and 32 in window
B D     Kangaroo rat 5bp
B D   Naked mole-rat 4bp
B D       Guinea pig 4bp

Alignment block 32 of 386 in window, 56747056 - 56747060, 5 bps 
B D             Mouse  tccgg
B D               Rat  tctgg
B D      Kangaroo rat  tctaa
B D    Naked mole-rat  tccag
B D        Guinea pig  tccaa
B D            Rabbit  tttaa
B D              Pika  tctaa
B D             Human  tcaat
B D             Chimp  tcaat
B D           Gorilla  tcaat
B D         Orangutan  tcaat
B D            Gibbon  tcaat
B D            Rhesus  tcaat
B D            Baboon  tcaat
B D          Marmoset  tcaaa
B D   Squirrel monkey  tcaaa
B D           Tarsier  tctaa
B D          Bushbaby  tcaaa
B D        Tree shrew  gctaa
B D               Pig  tctaa
B D            Alpaca  tctaa
B D           Dolphin  tctaa
B D             Sheep  tctaa
B D               Cow  tctaa
B D               Dog  tctaa
B D             Horse  tctaa
B D           Megabat  tctaa
B D             Shrew  ----a
B D          Elephant  tctaa
B D        Rock hyrax  tctaa
B D           Manatee  tctaa
B D             Sloth  tctaa
B D          Squirrel  -----
B D             Panda  =====
B D            Tenrec  =====
B D            Medaka  =====
B D     X. tropicalis  =====
B D          Platypus  =====
B D            Turkey  =====
B D        Coelacanth  =====
B D   Tasmanian devil  =====
B D           Opossum  =====
B D            Lizard  =====
B D        Budgerigar  =====
B D       Zebra finch  =====
B D           Chicken  =====
B D    Painted turtle  =====
  D  Little brown bat  =====
B D         Armadillo  =====
B D               Cat  =====
B D       Mouse lemur  =====
B D          Hedgehog  =====

Inserts between block 32 and 33 in window
B D              Pig 1bp
B D           Alpaca 1bp
B D          Dolphin 1bp
B D            Sheep 1bp
B D              Cow 1bp
B D              Dog 1bp
B D            Horse 1bp
B D          Megabat 1bp
B D            Shrew 1bp

Alignment block 33 of 386 in window, 56747061 - 56747062, 2 bps 
B D             Mouse  -ta
B D               Rat  -ta
B D      Kangaroo rat  -tg
B D    Naked mole-rat  -tg
B D        Guinea pig  -tg
B D          Squirrel  --a
B D            Rabbit  -ta
B D              Pika  -tg
B D             Human  -tg
B D             Chimp  -tg
B D           Gorilla  -tg
B D         Orangutan  -tg
B D            Gibbon  -tg
B D            Rhesus  -tg
B D            Baboon  -tg
B D          Marmoset  -tg
B D   Squirrel monkey  -tg
B D           Tarsier  -tg
B D          Bushbaby  -tg
B D        Tree shrew  -tg
B D               Pig  -t-
B D            Alpaca  -t-
B D           Dolphin  -t-
B D             Sheep  -t-
B D               Cow  -t-
B D               Dog  -t-
B D             Panda  -c-
B D             Horse  -t-
B D           Megabat  -t-
B D             Shrew  -t-
B D          Elephant  tt-
B D        Rock hyrax  gt-
B D           Manatee  tt-
B D             Sloth  tt-
B D            Tenrec  ===
B D            Medaka  ===
B D     X. tropicalis  ===
B D          Platypus  ===
B D            Turkey  ===
B D        Coelacanth  ===
B D   Tasmanian devil  ===
B D           Opossum  ===
B D            Lizard  ===
B D        Budgerigar  ===
B D       Zebra finch  ===
B D           Chicken  ===
B D    Painted turtle  ===
  D  Little brown bat  ===
B D         Armadillo  ===
B D               Cat  ===
B D       Mouse lemur  ===
B D          Hedgehog  ===

Alignment block 34 of 386 in window, 56747063 - 56747063, 1 bps 
B D             Mouse  c
B D               Rat  c
B D      Kangaroo rat  c
B D    Naked mole-rat  c
B D        Guinea pig  c
B D          Squirrel  a
B D            Rabbit  c
B D              Pika  c
B D             Human  c
B D             Chimp  c
B D           Gorilla  c
B D         Orangutan  c
B D            Gibbon  c
B D            Rhesus  c
B D            Baboon  c
B D          Marmoset  t
B D   Squirrel monkey  c
B D           Tarsier  c
B D          Bushbaby  c
B D        Tree shrew  c
B D               Pig  c
B D            Alpaca  c
B D           Dolphin  c
B D             Sheep  c
B D               Cow  c
B D               Cat  c
B D               Dog  c
B D             Panda  c
B D             Horse  c
B D           Megabat  c
B D             Shrew  c
B D          Elephant  c
B D        Rock hyrax  c
B D           Manatee  c
B D             Sloth  c
B D            Tenrec  =
B D            Medaka  =
B D     X. tropicalis  =
B D          Platypus  =
B D            Turkey  =
B D        Coelacanth  =
B D   Tasmanian devil  =
B D           Opossum  =
B D            Lizard  =
B D        Budgerigar  =
B D       Zebra finch  =
B D           Chicken  =
B D    Painted turtle  =
  D  Little brown bat  =
B D         Armadillo  =
B D       Mouse lemur  =
B D          Hedgehog  =

Alignment block 35 of 386 in window, 56747064 - 56747068, 5 bps 
B D             Mouse  ctaaa
B D               Rat  ctaaa
B D      Kangaroo rat  ctaca
B D    Naked mole-rat  ctata
B D        Guinea pig  ctata
B D          Squirrel  cttca
B D            Rabbit  ctaca
B D              Pika  ctaaa
B D             Human  ctata
B D             Chimp  ctata
B D           Gorilla  ctata
B D         Orangutan  ctata
B D            Gibbon  ctata
B D            Rhesus  ctata
B D            Baboon  ctata
B D          Marmoset  ctata
B D   Squirrel monkey  ccata
B D           Tarsier  ctata
B D          Bushbaby  ctata
B D        Tree shrew  ctata
B D               Pig  ccaca
B D            Alpaca  tcata
B D           Dolphin  ccgta
B D             Sheep  tcata
B D               Cow  tcata
B D               Cat  ccata
B D               Dog  ccata
B D             Panda  ccatg
B D             Horse  ccatt
  D  Little brown bat  ccata
B D           Megabat  ccata
B D             Shrew  ccata
B D          Elephant  ctata
B D        Rock hyrax  ctat-
B D           Manatee  ctata
B D             Sloth  ctata
B D            Tenrec  =====
B D            Medaka  =====
B D     X. tropicalis  =====
B D          Platypus  =====
B D            Turkey  =====
B D        Coelacanth  =====
B D   Tasmanian devil  =====
B D           Opossum  =====
B D            Lizard  =====
B D        Budgerigar  =====
B D       Zebra finch  =====
B D           Chicken  =====
B D    Painted turtle  =====
B D         Armadillo  =====
B D       Mouse lemur  =====
B D          Hedgehog  =====

Alignment block 36 of 386 in window, 56747069 - 56747077, 9 bps 
B D             Mouse  agaat------------tagg
B D               Rat  agaat------------taga
B D      Kangaroo rat  aaaa-------------taga
B D    Naked mole-rat  aaaatc------agaagtaaa
B D        Guinea pig  aaagtc------agaagtaaa
B D          Squirrel  aaaatt------agaagtaaa
B D            Rabbit  aaaatt------agaagtaaa
B D              Pika  gaaatt------agaagtaaa
B D             Human  aaaata------agaagtaat
B D             Chimp  aaaata------agaagtaat
B D           Gorilla  aaaata------agaagtaat
B D         Orangutan  aaaata------agaagtaat
B D            Gibbon  aaaata------agaagtaat
B D            Rhesus  aaaata------agaagtaat
B D            Baboon  aaaata------agaagtaat
B D          Marmoset  aaaatt------agaagtaaa
B D   Squirrel monkey  aaaatt------agaagtaaa
B D           Tarsier  aaaatt------agatgcaaa
B D          Bushbaby  aaaat------------taag
B D        Tree shrew  aaaatt------agaaataa-
B D               Pig  agaatt------agaagt---
B D            Alpaca  agaatt------agaagt---
B D           Dolphin  agaatt------agaggt---
B D             Sheep  agaatt------agaagt---
B D               Cow  agaaat------agaagt---
B D               Cat  aaaagt------aggagt---
B D               Dog  aaaagt------agaagt---
B D             Panda  aagagt------ggaagg---
B D             Horse  aaaatt------tgaagt---
  D  Little brown bat  aaaatt------at--gt---
B D           Megabat  aaaatt------agaaat---
B D             Shrew  aaaatt------aaaaat---
B D          Elephant  ------------aaaagg---
B D        Rock hyrax  ------------aaaagt---
B D           Manatee  ------------aaaagt---
B D             Sloth  aaaattataagtaaaagt---
B D           Opossum  ataact------taa------
B D            Tenrec  =====================
B D            Medaka  =====================
B D     X. tropicalis  =====================
B D          Platypus  =====================
B D            Turkey  =====================
B D        Coelacanth  =====================
B D   Tasmanian devil  =====================
B D            Lizard  =====================
B D        Budgerigar  =====================
B D       Zebra finch  =====================
B D           Chicken  =====================
B D    Painted turtle  =====================
B D         Armadillo  =====================
B D       Mouse lemur  =====================
B D          Hedgehog  =====================

Alignment block 37 of 386 in window, 56747078 - 56747078, 1 bps 
B D             Mouse  a
B D               Rat  c
B D      Kangaroo rat  a
B D    Naked mole-rat  a
B D        Guinea pig  a
B D          Squirrel  a
B D            Rabbit  a
B D              Pika  a
B D             Human  a
B D             Chimp  a
B D           Gorilla  a
B D         Orangutan  a
B D            Gibbon  a
B D            Rhesus  a
B D            Baboon  a
B D          Marmoset  a
B D   Squirrel monkey  a
B D           Tarsier  a
B D          Bushbaby  a
B D           Opossum  a
B D   Tasmanian devil  a
B D               Cow  -
B D          Elephant  -
B D           Manatee  -
B D               Pig  -
B D             Horse  -
B D             Panda  -
B D               Dog  -
B D            Tenrec  =
B D            Alpaca  -
B D        Tree shrew  -
B D             Sheep  -
B D            Medaka  =
B D     X. tropicalis  =
B D          Platypus  =
B D            Turkey  =
B D        Coelacanth  =
B D            Lizard  =
B D        Budgerigar  =
B D       Zebra finch  =
B D           Chicken  =
B D    Painted turtle  =
B D             Shrew  -
  D  Little brown bat  -
B D             Sloth  -
B D         Armadillo  =
B D               Cat  -
B D       Mouse lemur  =
B D          Hedgehog  =
B D        Rock hyrax  -
B D           Megabat  -
B D           Dolphin  -

Alignment block 38 of 386 in window, 56747079 - 56747080, 2 bps