Multiz Alignments of 35 Vertebrates
 

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Alignment block 1 of 162 in window, 56690786 - 56690988, 203 bps 
B D                 Mouse  gccccattgttccaggatgccaggtgttttcggtttttgcctttctatagcccaatgccaggtgtttgca
B D            Guinea pig  ======================================================================
B D                 Sheep  ======================================================================
B D                Rhesus  ======================================================================
B D    Hawaiian monk seal  ======================================================================
B D                   Dog  ======================================================================
B D                 Horse  ======================================================================
B D              Marmoset  ======================================================================
B D               Gorilla  ======================================================================
B D                Bonobo  ======================================================================
B D                 Chimp  ======================================================================
B D                 Human  ======================================================================
B D                Tenrec  ======================================================================
B D               Tarsier  ======================================================================
B D            Tree shrew  ======================================================================
B D              Hedgehog  ======================================================================
B D                  Pika  ======================================================================
B D             Zebrafish  ======================================================================
B D         X. tropicalis  ======================================================================
B D                   Cow  ======================================================================
B D               Chicken  ======================================================================
B D                 Shrew  ======================================================================
B D              Elephant  ======================================================================
B D              Squirrel  ======================================================================
B D                   Pig  ======================================================================
B D                Rabbit  ======================================================================
B D      Chinese pangolin  ======================================================================
B D              Bushbaby  ======================================================================
                  Beaver  ======================================================================
B D  Malayan flying lemur  ======================================================================
           GCF_003668045  ======================================================================
B D                   Rat  ----------------------------------------------------------------------

                    Mouse  gtttttatgtctatatgaaacccttaccccttgagcttgtggtcgactcctctacccctgtgtgggatac
               Guinea pig  ======================================================================
                    Sheep  ======================================================================
                   Rhesus  ======================================================================
       Hawaiian monk seal  ======================================================================
                      Dog  ======================================================================
                    Horse  ======================================================================
                 Marmoset  ======================================================================
                  Gorilla  ======================================================================
                   Bonobo  ======================================================================
                    Chimp  ======================================================================
                    Human  ======================================================================
                   Tenrec  ======================================================================
                  Tarsier  ======================================================================
               Tree shrew  ======================================================================
                 Hedgehog  ======================================================================
                     Pika  ======================================================================
                Zebrafish  ======================================================================
            X. tropicalis  ======================================================================
                      Cow  ======================================================================
                  Chicken  ======================================================================
                    Shrew  ======================================================================
                 Elephant  ======================================================================
                 Squirrel  ======================================================================
                      Pig  ======================================================================
                   Rabbit  ======================================================================
         Chinese pangolin  ======================================================================
                 Bushbaby  ======================================================================
                   Beaver  ======================================================================
     Malayan flying lemur  ======================================================================
            GCF_003668045  ======================================================================
                      Rat  ----------------------------------------------------------------------

                    Mouse  gaattgtccccagtgcactggtctttcctgaataaacctcttgcagtttgcatcaagatcgtt
               Guinea pig  ===============================================================
                    Sheep  ===============================================================
                   Rhesus  ===============================================================
       Hawaiian monk seal  ===============================================================
                      Dog  ===============================================================
                    Horse  ===============================================================
                 Marmoset  ===============================================================
                  Gorilla  ===============================================================
                   Bonobo  ===============================================================
                    Chimp  ===============================================================
                    Human  ===============================================================
                   Tenrec  ===============================================================
                  Tarsier  ===============================================================
               Tree shrew  ===============================================================
                 Hedgehog  ===============================================================
                     Pika  ===============================================================
                Zebrafish  ===============================================================
            X. tropicalis  ===============================================================
                      Cow  ===============================================================
                  Chicken  ===============================================================
                    Shrew  ===============================================================
                 Elephant  ===============================================================
                 Squirrel  ===============================================================
                      Pig  ===============================================================
                   Rabbit  ===============================================================
         Chinese pangolin  ===============================================================
                 Bushbaby  ===============================================================
                   Beaver  ===============================================================
     Malayan flying lemur  ===============================================================
            GCF_003668045  ===============================================================
                      Rat  ---------------------------------------------------------------

Alignment block 2 of 162 in window, 56690989 - 56691034, 46 bps 
B D                 Mouse  tctcgtgagt-----gatttggggtgtcgcctctcctgagtcagaacgtgg
            GCF_003668045  cctcttgagtgctgggattaaaggtgt-gtgtcacccccttcacaac----
B D            Guinea pig  ===================================================
B D                 Sheep  ===================================================
B D                Rhesus  ===================================================
B D    Hawaiian monk seal  ===================================================
B D                   Dog  ===================================================
B D                 Horse  ===================================================
B D              Marmoset  ===================================================
B D               Gorilla  ===================================================
B D                Bonobo  ===================================================
B D                 Chimp  ===================================================
B D                 Human  ===================================================
B D                Tenrec  ===================================================
B D               Tarsier  ===================================================
B D            Tree shrew  ===================================================
B D              Hedgehog  ===================================================
B D                  Pika  ===================================================
B D             Zebrafish  ===================================================
B D         X. tropicalis  ===================================================
B D                   Cow  ===================================================
B D               Chicken  ===================================================
B D                 Shrew  ===================================================
B D              Elephant  ===================================================
B D              Squirrel  ===================================================
B D                   Pig  ===================================================
B D                Rabbit  ===================================================
B D      Chinese pangolin  ===================================================
B D              Bushbaby  ===================================================
                  Beaver  ===================================================
B D  Malayan flying lemur  ===================================================
B D                   Rat  ---------------------------------------------------

Alignment block 3 of 162 in window, 56691035 - 56691623, 589 bps 
B D                 Mouse  gggagtcttcacgttgtggatcttttattggttctctttctgtatctgggatgggtagacatttcttttt
B D                   Rat  ggaaatccctccagcatggctggttctctttctctttctctttctctcgagtgagtagacatttattttt
            GCF_003668045  ---agcctttctttctt---tagttagcttgttc--tctctttatctggggtgagtagacatttcttttt
B D            Guinea pig  ======================================================================
B D                 Sheep  ======================================================================
B D                Rhesus  ======================================================================
B D    Hawaiian monk seal  ======================================================================
B D                   Dog  ======================================================================
B D                 Horse  ======================================================================
B D              Marmoset  ======================================================================
B D               Gorilla  ======================================================================
B D                Bonobo  ======================================================================
B D                 Chimp  ======================================================================
B D                 Human  ======================================================================
B D                Tenrec  ======================================================================
B D               Tarsier  ======================================================================
B D            Tree shrew  ======================================================================
B D              Hedgehog  ======================================================================
B D                  Pika  ======================================================================
B D             Zebrafish  ======================================================================
B D         X. tropicalis  ======================================================================
B D                   Cow  ======================================================================
B D               Chicken  ======================================================================
B D                 Shrew  ======================================================================
B D              Elephant  ======================================================================
B D              Squirrel  ======================================================================
B D                   Pig  ======================================================================
B D                Rabbit  ======================================================================
B D      Chinese pangolin  ======================================================================
B D              Bushbaby  ======================================================================
                  Beaver  ======================================================================
B D  Malayan flying lemur  ======================================================================

                    Mouse  gtctt-----gaaaagtcacaggttatttgatgtctgaataac--gggctgacagaatcaatggtacgtg
                      Rat  gtctcccctggaaaagtcatagggtatttgatgtctgaataataggggctgacagaatcaatgatacctg
            GCF_003668045  gtatccccaggaaaagtcacagggtacttgatatctgagtaatagggactgacagaatcaatgatgagtg
               Guinea pig  ======================================================================
                    Sheep  ======================================================================
                   Rhesus  ======================================================================
       Hawaiian monk seal  ======================================================================
                      Dog  ======================================================================
                    Horse  ======================================================================
                 Marmoset  ======================================================================
                  Gorilla  ======================================================================
                   Bonobo  ======================================================================
                    Chimp  ======================================================================
                    Human  ======================================================================
                   Tenrec  ======================================================================
                  Tarsier  ======================================================================
               Tree shrew  ======================================================================
                 Hedgehog  ======================================================================
                     Pika  ======================================================================
                Zebrafish  ======================================================================
            X. tropicalis  ======================================================================
                      Cow  ======================================================================
                  Chicken  ======================================================================
                    Shrew  ======================================================================
                 Elephant  ======================================================================
                 Squirrel  ======================================================================
                      Pig  ======================================================================
                   Rabbit  ======================================================================
         Chinese pangolin  ======================================================================
                 Bushbaby  ======================================================================
                   Beaver  ======================================================================
     Malayan flying lemur  ======================================================================

                    Mouse  tgaataaagtatcttctgggaaaatccaacaatggcagccttcttttgcagt-tgagatggaatgaggct
                      Rat  tgactaaagtatcttcgggggagatccaacggtggcagccttc-tttgtagtataagatgggatgctgcc
            GCF_003668045  tgcatagagtatctcctaggaaaactctagagagtcaatctccctctgtggtacatgatggaatgctgct
               Guinea pig  ======================================================================
                    Sheep  ======================================================================
                   Rhesus  ======================================================================
       Hawaiian monk seal  ======================================================================
                      Dog  ======================================================================
                    Horse  ======================================================================
                 Marmoset  ======================================================================
                  Gorilla  ======================================================================
                   Bonobo  ======================================================================
                    Chimp  ======================================================================
                    Human  ======================================================================
                   Tenrec  ======================================================================
                  Tarsier  ======================================================================
               Tree shrew  ======================================================================
                 Hedgehog  ======================================================================
                     Pika  ======================================================================
                Zebrafish  ======================================================================
            X. tropicalis  ======================================================================
                      Cow  ======================================================================
                  Chicken  ======================================================================
                    Shrew  ======================================================================
                 Elephant  ======================================================================
                 Squirrel  ======================================================================
                      Pig  ======================================================================
                   Rabbit  ======================================================================
         Chinese pangolin  ======================================================================
                 Bushbaby  ======================================================================
                   Beaver  ======================================================================
     Malayan flying lemur  ======================================================================

                    Mouse  gcacaggcagttgtaaggttcttgctactcgtgagaagacatgaaaataagaactatggtatctgcacag
                      Rat  acacaggtggttgtaaggctctggctgccggcaagaagccatgcaaat--gaattatggtatctgcacag
            GCF_003668045  tcacaggtagttgtaaggcccttgctagtggtatgaaaacatgaaaatgagggctatggtatctgtccaa
               Guinea pig  ======================================================================
                    Sheep  ======================================================================
                   Rhesus  ======================================================================
       Hawaiian monk seal  ======================================================================
                      Dog  ======================================================================
                    Horse  ======================================================================
                 Marmoset  ======================================================================
                  Gorilla  ======================================================================
                   Bonobo  ======================================================================
                    Chimp  ======================================================================
                    Human  ======================================================================
                   Tenrec  ======================================================================
                  Tarsier  ======================================================================
               Tree shrew  ======================================================================
                 Hedgehog  ======================================================================
                     Pika  ======================================================================
                Zebrafish  ======================================================================
            X. tropicalis  ======================================================================
                      Cow  ======================================================================
                  Chicken  ======================================================================
                    Shrew  ======================================================================
                 Elephant  ======================================================================
                 Squirrel  ======================================================================
                      Pig  ======================================================================
                   Rabbit  ======================================================================
         Chinese pangolin  ======================================================================
                 Bushbaby  ======================================================================
                   Beaver  ======================================================================
     Malayan flying lemur  ======================================================================

                    Mouse  ggggaacttgcacaattaacagataaattaccctgagaaatggatgtgtagataacgtcttagtttcttt
                      Rat  ggggaacttgcccacttaacagagaaattacaatgagaagtgggtgtgtggataatgtcttagttaattt
            GCF_003668045  agggaacttgcccacttaagggaagaatcacaaagagaataggatgtttag----tgtcttaattacttt
               Guinea pig  ======================================================================
                    Sheep  ======================================================================
                   Rhesus  ======================================================================
       Hawaiian monk seal  ======================================================================
                      Dog  ======================================================================
                    Horse  ======================================================================
                 Marmoset  ======================================================================
                  Gorilla  ======================================================================
                   Bonobo  ======================================================================
                    Chimp  ======================================================================
                    Human  ======================================================================
                   Tenrec  ======================================================================
                  Tarsier  ======================================================================
               Tree shrew  ======================================================================
                 Hedgehog  ======================================================================
                     Pika  ======================================================================
                Zebrafish  ======================================================================
            X. tropicalis  ======================================================================
                      Cow  ======================================================================
                  Chicken  ======================================================================
                    Shrew  ======================================================================
                 Elephant  ======================================================================
                 Squirrel  ======================================================================
                      Pig  ======================================================================
                   Rabbit  ======================================================================
         Chinese pangolin  ======================================================================
                 Bushbaby  ======================================================================
                   Beaver  ======================================================================
     Malayan flying lemur  ======================================================================

                    Mouse  tctattactgtgaggagacacgcgtttcactccttgaaccccatagagttgtagccacatcataatgtaa
                      Rat  t-tattgctgtaaggagacacacatttcactccttggactccataggcttgtaaccatatcataatataa
            GCF_003668045  tctaatgctatgaaggaacac----tgtagtctctggcccacagaggtttataaccatatcattaagtaa
               Guinea pig  ======================================================================
                    Sheep  ======================================================================
                   Rhesus  ======================================================================
       Hawaiian monk seal  ======================================================================
                      Dog  ======================================================================
                    Horse  ======================================================================
                 Marmoset  ======================================================================
                  Gorilla  ======================================================================
                   Bonobo  ======================================================================
                    Chimp  ======================================================================
                    Human  ======================================================================
                   Tenrec  ======================================================================
                  Tarsier  ======================================================================
               Tree shrew  ======================================================================
                 Hedgehog  ======================================================================
                     Pika  ======================================================================
                Zebrafish  ======================================================================
            X. tropicalis  ======================================================================
                      Cow  ======================================================================
                  Chicken  ======================================================================
                    Shrew  ======================================================================
                 Elephant  ======================================================================
                 Squirrel  ======================================================================
                      Pig  ======================================================================
                   Rabbit  ======================================================================
         Chinese pangolin  ======================================================================
                 Bushbaby  ======================================================================
                   Beaver  ======================================================================
     Malayan flying lemur  ======================================================================

                    Mouse  aatgcatttactccaaagacctcatagtcttacacag----tctcaagactgtctaa--------tctct
                      Rat  aatgcatttgctccaaagtccccttggtctcacacagtcactctcaagactgtctaa------agtctct
            GCF_003668045  aatgcatttactccaaagtccctataatctt--acag----tgttatgactgtttaaaagtccagtctcc
               Guinea pig  ======================================================================
                    Sheep  ======================================================================
                   Rhesus  ======================================================================
       Hawaiian monk seal  ======================================================================
                      Dog  ======================================================================
                    Horse  ======================================================================
                 Marmoset  ======================================================================
                  Gorilla  ======================================================================
                   Bonobo  ======================================================================
                    Chimp  ======================================================================
                    Human  ======================================================================
                   Tenrec  ======================================================================
                  Tarsier  ======================================================================
               Tree shrew  ======================================================================
                 Hedgehog  ======================================================================
                     Pika  ======================================================================
                Zebrafish  ======================================================================
            X. tropicalis  ======================================================================
                      Cow  ======================================================================
                  Chicken  ======================================================================
                    Shrew  ======================================================================
                 Elephant  ======================================================================
                 Squirrel  ======================================================================
                      Pig  ======================================================================
                   Rabbit  ======================================================================
         Chinese pangolin  ======================================================================
                 Bushbaby  ======================================================================
                   Beaver  ======================================================================
     Malayan flying lemur  ======================================================================

                    Mouse  tctgagactcaaggtaatctcttaactgtagccacatgtaagatcaaagagcaaattacatacttctgac
                      Rat  tctgagactcaaggctttctctttacagtagctacctgtaaaatcaaagagcagatc-----------ac
            GCF_003668045  tctgggactcaaggcaatctcttgactgtaatcccctgtaaaatcaaaggacaaattacatacttccaat
               Guinea pig  ======================================================================
                    Sheep  ======================================================================
                   Rhesus  ======================================================================
       Hawaiian monk seal  ======================================================================
                      Dog  ======================================================================
                    Horse  ======================================================================
                 Marmoset  ======================================================================
                  Gorilla  ======================================================================
                   Bonobo  ======================================================================
                    Chimp  ======================================================================
                    Human  ======================================================================
                   Tenrec  ======================================================================
                  Tarsier  ======================================================================
               Tree shrew  ======================================================================
                 Hedgehog  ======================================================================
                     Pika  ======================================================================
                Zebrafish  ======================================================================
            X. tropicalis  ======================================================================
                      Cow  ======================================================================
                  Chicken  ======================================================================
                    Shrew  ======================================================================
                 Elephant  ======================================================================
                 Squirrel  ======================================================================
                      Pig  ======================================================================
                   Rabbit  ======================================================================
         Chinese pangolin  ======================================================================
                 Bushbaby  ======================================================================
                   Beaver  ======================================================================
     Malayan flying lemur  ======================================================================

                    Mouse  atac-atggtat------------attttcggatgctg------------tattgtgagaaagtactgga
                      Rat  atac-gtggtac------------attttgggatgctg------------cactgtgaggaaatactg--
            GCF_003668045  atgcaatggcacagaatatacattactattggaaatggaaggaaaggggatattttgaggaaatgctggt
               Guinea pig  ======================================================================
                    Sheep  ======================================================================
                   Rhesus  ======================================================================
       Hawaiian monk seal  ======================================================================
                      Dog  ======================================================================
                    Horse  ======================================================================
                 Marmoset  ======================================================================
                  Gorilla  ======================================================================
                   Bonobo  ======================================================================
                    Chimp  ======================================================================
                    Human  ======================================================================
                   Tenrec  ======================================================================
                  Tarsier  ======================================================================
               Tree shrew  ======================================================================
                 Hedgehog  ======================================================================
                     Pika  ======================================================================
                Zebrafish  ======================================================================
            X. tropicalis  ======================================================================
                      Cow  ======================================================================
                  Chicken  ======================================================================
                    Shrew  ======================================================================
                 Elephant  ======================================================================
                 Squirrel  ======================================================================
                      Pig  ======================================================================
                   Rabbit  ======================================================================
         Chinese pangolin  ======================================================================
                 Bushbaby  ======================================================================
                   Beaver  ======================================================================
     Malayan flying lemur  ======================================================================

                    Mouse  ccaa
                      Rat  ----
            GCF_003668045  ctaa
               Guinea pig  ====
                    Sheep  ====
                   Rhesus  ====
       Hawaiian monk seal  ====
                      Dog  ====
                    Horse  ====
                 Marmoset  ====
                  Gorilla  ====
                   Bonobo  ====
                    Chimp  ====
                    Human  ====
                   Tenrec  ====
                  Tarsier  ====
               Tree shrew  ====
                 Hedgehog  ====
                     Pika  ====
                Zebrafish  ====
            X. tropicalis  ====
                      Cow  ====
                  Chicken  ====
                    Shrew  ====
                 Elephant  ====
                 Squirrel  ====
                      Pig  ====
                   Rabbit  ====
         Chinese pangolin  ====
                 Bushbaby  ====
                   Beaver  ====
     Malayan flying lemur  ====

Inserts between block 3 and 4 in window
           GCF_003668045 7477bp

Alignment block 4 of 162 in window, 56691624 - 56692428, 805 bps 
B D                 Mouse  gcaagaccaaaactgagcaggacaaactacaaactgttggcaaaatgttttttgtacactgtgtaaagtc
B D                   Rat  ----gaccaaagctgaataggacaaactacaaactgttggcaaaatggcttttgtac-ctgtgtaaagtt
B D            Guinea pig  ======================================================================
B D                 Sheep  ======================================================================
B D                Rhesus  ======================================================================
B D    Hawaiian monk seal  ======================================================================
B D                   Dog  ======================================================================
B D                 Horse  ======================================================================
B D              Marmoset  ======================================================================
B D               Gorilla  ======================================================================
B D                Bonobo  ======================================================================
B D                 Chimp  ======================================================================
B D                 Human  ======================================================================
B D                Tenrec  ======================================================================
B D               Tarsier  ======================================================================
B D            Tree shrew  ======================================================================
B D              Hedgehog  ======================================================================
B D                  Pika  ======================================================================
B D             Zebrafish  ======================================================================
B D         X. tropicalis  ======================================================================
B D                   Cow  ======================================================================
B D               Chicken  ======================================================================
B D                 Shrew  ======================================================================
B D              Elephant  ======================================================================
B D              Squirrel  ======================================================================
B D                   Pig  ======================================================================
B D                Rabbit  ======================================================================
B D      Chinese pangolin  ======================================================================
B D              Bushbaby  ======================================================================
                  Beaver  ======================================================================
B D  Malayan flying lemur  ======================================================================
           GCF_003668045  ======================================================================

                    Mouse  taccctggtattagttcaactgttgacttctctacgccactatctggtttcaatctggacatgactttgc
                      Rat  tacctttgtattgtttccactgctgatttctctatgccactatctggtttcagtctggacatgattttgt
               Guinea pig  ======================================================================
                    Sheep  ======================================================================
                   Rhesus  ======================================================================
       Hawaiian monk seal  ======================================================================
                      Dog  ======================================================================
                    Horse  ======================================================================
                 Marmoset  ======================================================================
                  Gorilla  ======================================================================
                   Bonobo  ======================================================================
                    Chimp  ======================================================================
                    Human  ======================================================================
                   Tenrec  ======================================================================
                  Tarsier  ======================================================================
               Tree shrew  ======================================================================
                 Hedgehog  ======================================================================
                     Pika  ======================================================================
                Zebrafish  ======================================================================
            X. tropicalis  ======================================================================
                      Cow  ======================================================================
                  Chicken  ======================================================================
                    Shrew  ======================================================================
                 Elephant  ======================================================================
                 Squirrel  ======================================================================
                      Pig  ======================================================================
                   Rabbit  ======================================================================
         Chinese pangolin  ======================================================================
                 Bushbaby  ======================================================================
                   Beaver  ======================================================================
     Malayan flying lemur  ======================================================================
            GCF_003668045  ======================================================================

                    Mouse  --tgtttattcttagaagctcc--tcttaagtttgtctaaacattgctcctcattcatgctctgctttgc
                      Rat  tatgtttattcttagaagctcctgtctcaagtttgtctgaaccttgttcctcatctcttctctgccttgc
               Guinea pig  ======================================================================
                    Sheep  ======================================================================
                   Rhesus  ======================================================================
       Hawaiian monk seal  ======================================================================
                      Dog  ======================================================================
                    Horse  ======================================================================
                 Marmoset  ======================================================================
                  Gorilla  ======================================================================
                   Bonobo  ======================================================================
                    Chimp  ======================================================================
                    Human  ======================================================================
                   Tenrec  ======================================================================
                  Tarsier  ======================================================================
               Tree shrew  ======================================================================
                 Hedgehog  ======================================================================
                     Pika  ======================================================================
                Zebrafish  ======================================================================
            X. tropicalis  ======================================================================
                      Cow  ======================================================================
                  Chicken  ======================================================================
                    Shrew  ======================================================================
                 Elephant  ======================================================================
                 Squirrel  ======================================================================
                      Pig  ======================================================================
                   Rabbit  ======================================================================
         Chinese pangolin  ======================================================================
                 Bushbaby  ======================================================================
                   Beaver  ======================================================================
     Malayan flying lemur  ======================================================================
            GCF_003668045  ======================================================================

                    Mouse  caataaaagccaatgagccaatacagagctttcgagaggatgaggtagtatgggtggagaaagagactgg
                      Rat  caataaaagccagtgagccaataccgagctttagagagaataaggtaggaggggtggagaa--agactgg
               Guinea pig  ======================================================================
                    Sheep  ======================================================================
                   Rhesus  ======================================================================
       Hawaiian monk seal  ======================================================================
                      Dog  ======================================================================
                    Horse  ======================================================================
                 Marmoset  ======================================================================
                  Gorilla  ======================================================================
                   Bonobo  ======================================================================
                    Chimp  ======================================================================
                    Human  ======================================================================
                   Tenrec  ======================================================================
                  Tarsier  ======================================================================
               Tree shrew  ======================================================================
                 Hedgehog  ======================================================================
                     Pika  ======================================================================
                Zebrafish  ======================================================================
            X. tropicalis  ======================================================================
                      Cow  ======================================================================
                  Chicken  ======================================================================
                    Shrew  ======================================================================
                 Elephant  ======================================================================
                 Squirrel  ======================================================================
                      Pig  ======================================================================
                   Rabbit  ======================================================================
         Chinese pangolin  ======================================================================
                 Bushbaby  ======================================================================
                   Beaver  ======================================================================
     Malayan flying lemur  ======================================================================
            GCF_003668045  ======================================================================

                    Mouse  aagtggaggaa---agccatgaaagaggtcgaggaaagcatcaggagaagagaattggaacaagaaagga
                      Rat  aagtgaaggaagggagccatgaaagaggtcaagg-aagcatc---agaacagagctggagcacaaaagga
               Guinea pig  ======================================================================
                    Sheep  ======================================================================
                   Rhesus  ======================================================================
       Hawaiian monk seal  ======================================================================
                      Dog  ======================================================================
                    Horse  ======================================================================
                 Marmoset  ======================================================================
                  Gorilla  ======================================================================
                   Bonobo  ======================================================================
                    Chimp  ======================================================================
                    Human  ======================================================================
                   Tenrec  ======================================================================
                  Tarsier  ======================================================================
               Tree shrew  ======================================================================
                 Hedgehog  ======================================================================
                     Pika  ======================================================================
                Zebrafish  ======================================================================
            X. tropicalis  ======================================================================
                      Cow  ======================================================================
                  Chicken  ======================================================================
                    Shrew  ======================================================================
                 Elephant  ======================================================================
                 Squirrel  ======================================================================
                      Pig  ======================================================================
                   Rabbit  ======================================================================
         Chinese pangolin  ======================================================================
                 Bushbaby  ======================================================================
                   Beaver  ======================================================================
     Malayan flying lemur  ======================================================================
            GCF_003668045  ======================================================================

                    Mouse  agaaagaatgcaagcaatatggagatatta--gtgtctgagaggaagcctgaccagcttggaggtttaga
                      Rat  agaaagaacgcaaggaatgtggacatattaatgtgtctgggaggaag-----ccagcttggaggtttaga
               Guinea pig  ======================================================================
                    Sheep  ======================================================================
                   Rhesus  ======================================================================
       Hawaiian monk seal  ======================================================================
                      Dog  ======================================================================
                    Horse  ======================================================================
                 Marmoset  ======================================================================
                  Gorilla  ======================================================================
                   Bonobo  ======================================================================
                    Chimp  ======================================================================
                    Human  ======================================================================
                   Tenrec  ======================================================================
                  Tarsier  ======================================================================
               Tree shrew  ======================================================================
                 Hedgehog  ======================================================================
                     Pika  ======================================================================
                Zebrafish  ======================================================================
            X. tropicalis  ======================================================================
                      Cow  ======================================================================
                  Chicken  ======================================================================
                    Shrew  ======================================================================
                 Elephant  ======================================================================
                 Squirrel  ======================================================================
                      Pig  ======================================================================
                   Rabbit  ======================================================================
         Chinese pangolin  ======================================================================
                 Bushbaby  ======================================================================
                   Beaver  ======================================================================
     Malayan flying lemur  ======================================================================
            GCF_003668045  ======================================================================

                    Mouse  atggagtcataattgttcagtacttgactcaaggcagttttaataaatctta--ctctccgtgtagttat
                      Rat  atggagtaataattgttcagaatttggctctgggcaattttaataaatcttagtctttcggtggagttat
               Guinea pig  ======================================================================
                    Sheep  ======================================================================
                   Rhesus  ======================================================================
       Hawaiian monk seal  ======================================================================
                      Dog  ======================================================================
                    Horse  ======================================================================
                 Marmoset  ======================================================================
                  Gorilla  ======================================================================
                   Bonobo  ======================================================================
                    Chimp  ======================================================================
                    Human  ======================================================================
                   Tenrec  ======================================================================
                  Tarsier  ======================================================================
               Tree shrew  ======================================================================
                 Hedgehog  ======================================================================
                     Pika  ======================================================================
                Zebrafish  ======================================================================
            X. tropicalis  ======================================================================
                      Cow  ======================================================================
                  Chicken  ======================================================================
                    Shrew  ======================================================================
                 Elephant  ======================================================================
                 Squirrel  ======================================================================
                      Pig  ======================================================================
                   Rabbit  ======================================================================
         Chinese pangolin  ======================================================================
                 Bushbaby  ======================================================================
                   Beaver  ======================================================================
     Malayan flying lemur  ======================================================================
            GCF_003668045  ======================================================================

                    Mouse  ttggggaatttgctggttaaggaataactgctggcatactagttttatgaatctatattgatatgataat
                      Rat  ttggggaattagctggttaaggaatgactgctgccatgctaattttatga--ctacattaatataataat
               Guinea pig  ======================================================================
                    Sheep  ======================================================================
                   Rhesus  ======================================================================
       Hawaiian monk seal  ======================================================================
                      Dog  ======================================================================
                    Horse  ======================================================================
                 Marmoset  ======================================================================
                  Gorilla  ======================================================================
                   Bonobo  ======================================================================
                    Chimp  ======================================================================
                    Human  ======================================================================
                   Tenrec  ======================================================================
                  Tarsier  ======================================================================
               Tree shrew  ======================================================================
                 Hedgehog  ======================================================================
                     Pika  ======================================================================
                Zebrafish  ======================================================================
            X. tropicalis  ======================================================================
                      Cow  ======================================================================
                  Chicken  ======================================================================
                    Shrew  ======================================================================
                 Elephant  ======================================================================
                 Squirrel  ======================================================================
                      Pig  ======================================================================
                   Rabbit  ======================================================================
         Chinese pangolin  ======================================================================
                 Bushbaby  ======================================================================
                   Beaver  ======================================================================
     Malayan flying lemur  ======================================================================
            GCF_003668045  ======================================================================

                    Mouse  catacaacatcaaaccctgtagctctatgtccagtgtcaaagggcttagatggctcatcagatctcttac
                      Rat  cacccaacaccaacccttgtaaccctatgttcaatgtcaaagggcttcgatggttcttcagctctc-tat
               Guinea pig  ======================================================================
                    Sheep  ======================================================================
                   Rhesus  ======================================================================
       Hawaiian monk seal  ======================================================================
                      Dog  ======================================================================
                    Horse  ======================================================================
                 Marmoset  ======================================================================
                  Gorilla  ======================================================================
                   Bonobo  ======================================================================
                    Chimp  ======================================================================
                    Human  ======================================================================
                   Tenrec  ======================================================================
                  Tarsier  ======================================================================
               Tree shrew  ======================================================================
                 Hedgehog  ======================================================================
                     Pika  ======================================================================
                Zebrafish  ======================================================================
            X. tropicalis  ======================================================================
                      Cow  ======================================================================
                  Chicken  ======================================================================
                    Shrew  ======================================================================
                 Elephant  ======================================================================
                 Squirrel  ======================================================================
                      Pig  ======================================================================
                   Rabbit  ======================================================================
         Chinese pangolin  ======================================================================
                 Bushbaby  ======================================================================
                   Beaver  ======================================================================
     Malayan flying lemur  ======================================================================
            GCF_003668045  ======================================================================

                    Mouse  tctttccagtcttattgactgcaacacactcctctctcttgggctggtgtcacttgcattcaagttctcc
                      Rat  tccttccagttttgttgactgcaacacacttctctctctcgggctggt-ccactcccgttctagttctca
               Guinea pig  ======================================================================
                    Sheep  ======================================================================
                   Rhesus  ======================================================================
       Hawaiian monk seal  ======================================================================
                      Dog  ======================================================================
                    Horse  ======================================================================
                 Marmoset  ======================================================================
                  Gorilla  ======================================================================
                   Bonobo  ======================================================================
                    Chimp  ======================================================================
                    Human  ======================================================================
                   Tenrec  ======================================================================
                  Tarsier  ======================================================================
               Tree shrew  ======================================================================
                 Hedgehog  ======================================================================
                     Pika  ======================================================================
                Zebrafish  ======================================================================
            X. tropicalis  ======================================================================
                      Cow  ======================================================================
                  Chicken  ======================================================================
                    Shrew  ======================================================================
                 Elephant  ======================================================================
                 Squirrel  ======================================================================
                      Pig  ======================================================================
                   Rabbit  ======================================================================
         Chinese pangolin  ======================================================================
                 Bushbaby  ======================================================================
                   Beaver  ======================================================================
     Malayan flying lemur  ======================================================================
            GCF_003668045  ======================================================================

                    Mouse  tcagaagattgattccccatggctttggcatgtccaacatcatggggtctccaatgtaatccaagcttca
                      Rat  ----------gagtacccatggctttggcatgtcaaacatcttggggtctccagtgtaatccaagcttca
               Guinea pig  ======================================================================
                    Sheep  ======================================================================
                   Rhesus  ======================================================================
       Hawaiian monk seal  ======================================================================
                      Dog  ======================================================================
                    Horse  ======================================================================
                 Marmoset  ======================================================================
                  Gorilla  ======================================================================
                   Bonobo  ======================================================================
                    Chimp  ======================================================================
                    Human  ======================================================================
                   Tenrec  ======================================================================
                  Tarsier  ======================================================================
               Tree shrew  ======================================================================
                 Hedgehog  ======================================================================
                     Pika  ======================================================================
                Zebrafish  ======================================================================
            X. tropicalis  ======================================================================
                      Cow  ======================================================================
                  Chicken  ======================================================================
                    Shrew  ======================================================================
                 Elephant  ======================================================================
                 Squirrel  ======================================================================
                      Pig  ======================================================================
                   Rabbit  ======================================================================
         Chinese pangolin  ======================================================================
                 Bushbaby  ======================================================================
                   Beaver  ======================================================================
     Malayan flying lemur  ======================================================================
            GCF_003668045  ======================================================================

                    Mouse  ctttcagagctccatgcaatggcctctcagggaatacatgcacgga
                      Rat  cttccagagcttcatgcaagggcctctcgaagattccacgcaggga
               Guinea pig  ==============================================
                    Sheep  ==============================================
                   Rhesus  ==============================================
       Hawaiian monk seal  ==============================================
                      Dog  ==============================================
                    Horse  ==============================================
                 Marmoset  ==============================================
                  Gorilla  ==============================================
                   Bonobo  ==============================================
                    Chimp  ==============================================
                    Human  ==============================================
                   Tenrec  ==============================================
                  Tarsier  ==============================================
               Tree shrew  ==============================================
                 Hedgehog  ==============================================
                     Pika  ==============================================
                Zebrafish  ==============================================
            X. tropicalis  ==============================================
                      Cow  ==============================================
                  Chicken  ==============================================
                    Shrew  ==============================================
                 Elephant  ==============================================
                 Squirrel  ==============================================
                      Pig  ==============================================
                   Rabbit  ==============================================
         Chinese pangolin  ==============================================
                 Bushbaby  ==============================================
                   Beaver  ==============================================
     Malayan flying lemur  ==============================================
            GCF_003668045  ==============================================

Inserts between block 4 and 5 in window
B D                  Rat 867bp

Alignment block 5 of 162 in window, 56692429 - 56693493, 1065 bps 
B D                 Mouse  tgtgggaccgttaaaagcaacctggtttctggttgagctaggtttaaaaccctggagaccctgcagataa
B D            Guinea pig  ======================================================================
B D                 Sheep  ======================================================================
B D                Rhesus  ======================================================================
B D    Hawaiian monk seal  ======================================================================
B D                   Dog  ======================================================================
B D                 Horse  ======================================================================
B D              Marmoset  ======================================================================
B D               Gorilla  ======================================================================
B D                Bonobo  ======================================================================
B D                 Chimp  ======================================================================
B D                 Human  ======================================================================
B D                Tenrec  ======================================================================
B D               Tarsier  ======================================================================
B D            Tree shrew  ======================================================================
B D              Hedgehog  ======================================================================
B D                  Pika  ======================================================================
B D             Zebrafish  ======================================================================
B D         X. tropicalis  ======================================================================
B D                   Cow  ======================================================================
B D               Chicken  ======================================================================
B D                 Shrew  ======================================================================
B D              Elephant  ======================================================================
B D              Squirrel  ======================================================================
B D                   Pig  ======================================================================
B D                Rabbit  ======================================================================
B D      Chinese pangolin  ======================================================================
B D              Bushbaby  ======================================================================
                  Beaver  ======================================================================
B D  Malayan flying lemur  ======================================================================
           GCF_003668045  ======================================================================
B D                   Rat  ======================================================================

                    Mouse  ctttgcaaggcacggtagtcggtttgccacgctcctaaataccagactcctgacacaaggccgctgatct
               Guinea pig  ======================================================================
                    Sheep  ======================================================================
                   Rhesus  ======================================================================
       Hawaiian monk seal  ======================================================================
                      Dog  ======================================================================
                    Horse  ======================================================================
                 Marmoset  ======================================================================
                  Gorilla  ======================================================================
                   Bonobo  ======================================================================
                    Chimp  ======================================================================
                    Human  ======================================================================
                   Tenrec  ======================================================================
                  Tarsier  ======================================================================
               Tree shrew  ======================================================================
                 Hedgehog  ======================================================================
                     Pika  ======================================================================
                Zebrafish  ======================================================================
            X. tropicalis  ======================================================================
                      Cow  ======================================================================
                  Chicken  ======================================================================
                    Shrew  ======================================================================
                 Elephant  ======================================================================
                 Squirrel  ======================================================================
                      Pig  ======================================================================
                   Rabbit  ======================================================================
         Chinese pangolin  ======================================================================
                 Bushbaby  ======================================================================
                   Beaver  ======================================================================
     Malayan flying lemur  ======================================================================
            GCF_003668045  ======================================================================
                      Rat  ======================================================================

                    Mouse  ccactccatcattctatgcccatcagtcatataagggcaatgctccaagcccctccatgtgaccacaaat
               Guinea pig  ======================================================================
                    Sheep  ======================================================================
                   Rhesus  ======================================================================
       Hawaiian monk seal  ======================================================================
                      Dog  ======================================================================
                    Horse  ======================================================================
                 Marmoset  ======================================================================
                  Gorilla  ======================================================================
                   Bonobo  ======================================================================
                    Chimp  ======================================================================
                    Human  ======================================================================
                   Tenrec  ======================================================================
                  Tarsier  ======================================================================
               Tree shrew  ======================================================================
                 Hedgehog  ======================================================================
                     Pika  ======================================================================
                Zebrafish  ======================================================================
            X. tropicalis  ======================================================================
                      Cow  ======================================================================
                  Chicken  ======================================================================
                    Shrew  ======================================================================
                 Elephant  ======================================================================
                 Squirrel  ======================================================================
                      Pig  ======================================================================
                   Rabbit  ======================================================================
         Chinese pangolin  ======================================================================
                 Bushbaby  ======================================================================
                   Beaver  ======================================================================
     Malayan flying lemur  ======================================================================
            GCF_003668045  ======================================================================
                      Rat  ======================================================================

                    Mouse  cagatagcctcaagacagatctccagtttaatgaggtgcctacaggcctgaagggcttatccagttaagc
               Guinea pig  ======================================================================
                    Sheep  ======================================================================
                   Rhesus  ======================================================================
       Hawaiian monk seal  ======================================================================
                      Dog  ======================================================================
                    Horse  ======================================================================
                 Marmoset  ======================================================================
                  Gorilla  ======================================================================
                   Bonobo  ======================================================================
                    Chimp  ======================================================================
                    Human  ======================================================================
                   Tenrec  ======================================================================
                  Tarsier  ======================================================================
               Tree shrew  ======================================================================
                 Hedgehog  ======================================================================
                     Pika  ======================================================================
                Zebrafish  ======================================================================
            X. tropicalis  ======================================================================
                      Cow  ======================================================================
                  Chicken  ======================================================================
                    Shrew  ======================================================================
                 Elephant  ======================================================================
                 Squirrel  ======================================================================
                      Pig  ======================================================================
                   Rabbit  ======================================================================
         Chinese pangolin  ======================================================================
                 Bushbaby  ======================================================================
                   Beaver  ======================================================================
     Malayan flying lemur  ======================================================================
            GCF_003668045  ======================================================================
                      Rat  ======================================================================

                    Mouse  tccccttcccagacactcctccctgcaaaaggtatttaacctcaggcccgccctgtgaaagtggggaatg
               Guinea pig  ======================================================================
                    Sheep  ======================================================================
                   Rhesus  ======================================================================
       Hawaiian monk seal  ======================================================================
                      Dog  ======================================================================
                    Horse  ======================================================================
                 Marmoset  ======================================================================
                  Gorilla  ======================================================================
                   Bonobo  ======================================================================
                    Chimp  ======================================================================
                    Human  ======================================================================
                   Tenrec  ======================================================================
                  Tarsier  ======================================================================
               Tree shrew  ======================================================================
                 Hedgehog  ======================================================================
                     Pika  ======================================================================
                Zebrafish  ======================================================================
            X. tropicalis  ======================================================================
                      Cow  ======================================================================
                  Chicken  ======================================================================
                    Shrew  ======================================================================
                 Elephant  ======================================================================
                 Squirrel  ======================================================================
                      Pig  ======================================================================
                   Rabbit  ======================================================================
         Chinese pangolin  ======================================================================
                 Bushbaby  ======================================================================
                   Beaver  ======================================================================
     Malayan flying lemur  ======================================================================
            GCF_003668045  ======================================================================
                      Rat  ======================================================================

                    Mouse  gttttactcattgcaattctctaccatgacaataaatgccttaaagccatggactgtctcttctcattgg
               Guinea pig  ======================================================================
                    Sheep  ======================================================================
                   Rhesus  ======================================================================
       Hawaiian monk seal  ======================================================================
                      Dog  ======================================================================
                    Horse  ======================================================================
                 Marmoset  ======================================================================
                  Gorilla  ======================================================================
                   Bonobo  ======================================================================
                    Chimp  ======================================================================
                    Human  ======================================================================
                   Tenrec  ======================================================================
                  Tarsier  ======================================================================
               Tree shrew  ======================================================================
                 Hedgehog  ======================================================================
                     Pika  ======================================================================
                Zebrafish  ======================================================================
            X. tropicalis  ======================================================================
                      Cow  ======================================================================
                  Chicken  ======================================================================
                    Shrew  ======================================================================
                 Elephant  ======================================================================
                 Squirrel  ======================================================================
                      Pig  ======================================================================
                   Rabbit  ======================================================================
         Chinese pangolin  ======================================================================
                 Bushbaby  ======================================================================
                   Beaver  ======================================================================
     Malayan flying lemur  ======================================================================
            GCF_003668045  ======================================================================
                      Rat  ======================================================================

                    Mouse  gagcaatggagcaggtcttcttctaaagagcctcgtctaatctcccacagaaagcctcactgtgcttcaa
               Guinea pig  ======================================================================
                    Sheep  ======================================================================
                   Rhesus  ======================================================================
       Hawaiian monk seal  ======================================================================
                      Dog  ======================================================================
                    Horse  ======================================================================
                 Marmoset  ======================================================================
                  Gorilla  ======================================================================
                   Bonobo  ======================================================================
                    Chimp  ======================================================================
                    Human  ======================================================================
                   Tenrec  ======================================================================
                  Tarsier  ======================================================================
               Tree shrew  ======================================================================
                 Hedgehog  ======================================================================
                     Pika  ======================================================================
                Zebrafish  ======================================================================
            X. tropicalis  ======================================================================
                      Cow  ======================================================================
                  Chicken  ======================================================================
                    Shrew  ======================================================================
                 Elephant  ======================================================================
                 Squirrel  ======================================================================
                      Pig  ======================================================================
                   Rabbit  ======================================================================
         Chinese pangolin  ======================================================================
                 Bushbaby  ======================================================================
                   Beaver  ======================================================================
     Malayan flying lemur  ======================================================================
            GCF_003668045  ======================================================================
                      Rat  ======================================================================

                    Mouse  gccatggattccaccaagtcaagcccaagcaagccaaggacactctcctccctgcaggacccagtcagag
               Guinea pig  ======================================================================
                    Sheep  ======================================================================
                   Rhesus  ======================================================================
       Hawaiian monk seal  ======================================================================
                      Dog  ======================================================================
                    Horse  ======================================================================
                 Marmoset  ======================================================================
                  Gorilla  ======================================================================
                   Bonobo  ======================================================================
                    Chimp  ======================================================================
                    Human  ======================================================================
                   Tenrec  ======================================================================
                  Tarsier  ======================================================================
               Tree shrew  ======================================================================
                 Hedgehog  ======================================================================
                     Pika  ======================================================================
                Zebrafish  ======================================================================
            X. tropicalis  ======================================================================
                      Cow  ======================================================================
                  Chicken  ======================================================================
                    Shrew  ======================================================================
                 Elephant  ======================================================================
                 Squirrel  ======================================================================
                      Pig  ======================================================================
                   Rabbit  ======================================================================
         Chinese pangolin  ======================================================================
                 Bushbaby  ======================================================================
                   Beaver  ======================================================================
     Malayan flying lemur  ======================================================================
            GCF_003668045  ======================================================================
                      Rat  ======================================================================

                    Mouse  ctctcctccctcccttttcccttcaccctgggctagatacagctcccactctgttctcagctcttctgca
               Guinea pig  ======================================================================
                    Sheep  ======================================================================
                   Rhesus  ======================================================================
       Hawaiian monk seal  ======================================================================
                      Dog  ======================================================================
                    Horse  ======================================================================
                 Marmoset  ======================================================================
                  Gorilla  ======================================================================
                   Bonobo  ======================================================================
                    Chimp  ======================================================================
                    Human  ======================================================================
                   Tenrec  ======================================================================
                  Tarsier  ======================================================================
               Tree shrew  ======================================================================
                 Hedgehog  ======================================================================
                     Pika  ======================================================================
                Zebrafish  ======================================================================
            X. tropicalis  ======================================================================
                      Cow  ======================================================================
                  Chicken  ======================================================================
                    Shrew  ======================================================================
                 Elephant  ======================================================================
                 Squirrel  ======================================================================
                      Pig  ======================================================================
                   Rabbit  ======================================================================
         Chinese pangolin  ======================================================================
                 Bushbaby  ======================================================================
                   Beaver  ======================================================================
     Malayan flying lemur  ======================================================================
            GCF_003668045  ======================================================================
                      Rat  ======================================================================

                    Mouse  acatccagggcatctgtggtgctcaagagtctgagaatttatgtcctcagcctctgtgcaggtctgggac
               Guinea pig  ======================================================================
                    Sheep  ======================================================================
                   Rhesus  ======================================================================
       Hawaiian monk seal  ======================================================================
                      Dog  ======================================================================
                    Horse  ======================================================================
                 Marmoset  ======================================================================
                  Gorilla  ======================================================================
                   Bonobo  ======================================================================
                    Chimp  ======================================================================
                    Human  ======================================================================
                   Tenrec  ======================================================================
                  Tarsier  ======================================================================
               Tree shrew  ======================================================================
                 Hedgehog  ======================================================================
                     Pika  ======================================================================
                Zebrafish  ======================================================================
            X. tropicalis  ======================================================================
                      Cow  ======================================================================
                  Chicken  ======================================================================
                    Shrew  ======================================================================
                 Elephant  ======================================================================
                 Squirrel  ======================================================================
                      Pig  ======================================================================
                   Rabbit  ======================================================================
         Chinese pangolin  ======================================================================
                 Bushbaby  ======================================================================
                   Beaver  ======================================================================
     Malayan flying lemur  ======================================================================
            GCF_003668045  ======================================================================
                      Rat  ======================================================================

                    Mouse  ctctgagccaactccagcagtctgcagggaccgaagactatgctccccaccccaagagcggggtcctgtg
               Guinea pig  ======================================================================
                    Sheep  ======================================================================
                   Rhesus  ======================================================================
       Hawaiian monk seal  ======================================================================
                      Dog  ======================================================================
                    Horse  ======================================================================
                 Marmoset  ======================================================================
                  Gorilla  ======================================================================
                   Bonobo  ======================================================================
                    Chimp  ======================================================================
                    Human  ======================================================================
                   Tenrec  ======================================================================
                  Tarsier  ======================================================================
               Tree shrew  ======================================================================
                 Hedgehog  ======================================================================
                     Pika  ======================================================================
                Zebrafish  ======================================================================
            X. tropicalis  ======================================================================
                      Cow  ======================================================================
                  Chicken  ======================================================================
                    Shrew  ======================================================================
                 Elephant  ======================================================================
                 Squirrel  ======================================================================
                      Pig  ======================================================================
                   Rabbit  ======================================================================
         Chinese pangolin  ======================================================================
                 Bushbaby  ======================================================================
                   Beaver  ======================================================================
     Malayan flying lemur  ======================================================================
            GCF_003668045  ======================================================================
                      Rat  ======================================================================

                    Mouse  gcttctcatagcctgacgcctgcccagcatggtaacaagcagtcaaaacttccagagttctgcctcacct
               Guinea pig  ======================================================================
                    Sheep  ======================================================================
                   Rhesus  ======================================================================
       Hawaiian monk seal  ======================================================================
                      Dog  ======================================================================
                    Horse  ======================================================================
                 Marmoset  ======================================================================
                  Gorilla  ======================================================================
                   Bonobo  ======================================================================
                    Chimp  ======================================================================
                    Human  ======================================================================
                   Tenrec  ======================================================================
                  Tarsier  ======================================================================
               Tree shrew  ======================================================================
                 Hedgehog  ======================================================================
                     Pika  ======================================================================
                Zebrafish  ======================================================================
            X. tropicalis  ======================================================================
                      Cow  ======================================================================
                  Chicken  ======================================================================
                    Shrew  ======================================================================
                 Elephant  ======================================================================
                 Squirrel  ======================================================================
                      Pig  ======================================================================
                   Rabbit  ======================================================================
         Chinese pangolin  ======================================================================
                 Bushbaby  ======================================================================
                   Beaver  ======================================================================
     Malayan flying lemur  ======================================================================
            GCF_003668045  ======================================================================
                      Rat  ======================================================================

                    Mouse  agcagcccaagccccaagctgatcctccgtttcacctacacaggggtcccctaccacatctctggcctta
               Guinea pig  ======================================================================
                    Sheep  ======================================================================
                   Rhesus  ======================================================================
       Hawaiian monk seal  ======================================================================
                      Dog  ======================================================================
                    Horse  ======================================================================
                 Marmoset  ======================================================================
                  Gorilla  ======================================================================
                   Bonobo  ======================================================================
                    Chimp  ======================================================================
                    Human  ======================================================================
                   Tenrec  ======================================================================
                  Tarsier  ======================================================================
               Tree shrew  ======================================================================
                 Hedgehog  ======================================================================
                     Pika  ======================================================================
                Zebrafish  ======================================================================
            X. tropicalis  ======================================================================
                      Cow  ======================================================================
                  Chicken  ======================================================================
                    Shrew  ======================================================================
                 Elephant  ======================================================================
                 Squirrel  ======================================================================
                      Pig  ======================================================================
                   Rabbit  ======================================================================
         Chinese pangolin  ======================================================================
                 Bushbaby  ======================================================================
                   Beaver  ======================================================================
     Malayan flying lemur  ======================================================================
            GCF_003668045  ======================================================================
                      Rat  ======================================================================

                    Mouse  gtggctttccctaaccacagctcctttcctcctgtatccttcagctctaaaggctgttgctgccaagttc
               Guinea pig  ======================================================================
                    Sheep  ======================================================================
                   Rhesus  ======================================================================
       Hawaiian monk seal  ======================================================================
                      Dog  ======================================================================
                    Horse  ======================================================================
                 Marmoset  ======================================================================
                  Gorilla  ======================================================================
                   Bonobo  ======================================================================
                    Chimp  ======================================================================
                    Human  ======================================================================
                   Tenrec  ======================================================================
                  Tarsier  ======================================================================
               Tree shrew  ======================================================================
                 Hedgehog  ======================================================================
                     Pika  ======================================================================
                Zebrafish  ======================================================================
            X. tropicalis  ======================================================================
                      Cow  ======================================================================
                  Chicken  ======================================================================
                    Shrew  ======================================================================
                 Elephant  ======================================================================
                 Squirrel  ======================================================================
                      Pig  ======================================================================
                   Rabbit  ======================================================================
         Chinese pangolin  ======================================================================
                 Bushbaby  ======================================================================
                   Beaver  ======================================================================
     Malayan flying lemur  ======================================================================
            GCF_003668045  ======================================================================
                      Rat  ======================================================================

                    Mouse  ttctgactcctccttgaattacatttgcacaggcttcgctttgtgggtgctctctaggaacagataattt
               Guinea pig  ======================================================================
                    Sheep  ======================================================================
                   Rhesus  ======================================================================
       Hawaiian monk seal  ======================================================================
                      Dog  ======================================================================
                    Horse  ======================================================================
                 Marmoset  ======================================================================
                  Gorilla  ======================================================================
                   Bonobo  ======================================================================
                    Chimp  ======================================================================
                    Human  ======================================================================
                   Tenrec  ======================================================================
                  Tarsier  ======================================================================
               Tree shrew  ======================================================================
                 Hedgehog  ======================================================================
                     Pika  ======================================================================
                Zebrafish  ======================================================================
            X. tropicalis  ======================================================================
                      Cow  ======================================================================
                  Chicken  ======================================================================
                    Shrew  ======================================================================
                 Elephant  ======================================================================
                 Squirrel  ======================================================================
                      Pig  ======================================================================
                   Rabbit  ======================================================================
         Chinese pangolin  ======================================================================
                 Bushbaby  ======================================================================
                   Beaver  ======================================================================
     Malayan flying lemur  ======================================================================
            GCF_003668045  ======================================================================
                      Rat  ======================================================================

                    Mouse  cttaggctttttctt
               Guinea pig  ===============
                    Sheep  ===============
                   Rhesus  ===============
       Hawaiian monk seal  ===============
                      Dog  ===============
                    Horse  ===============
                 Marmoset  ===============
                  Gorilla  ===============
                   Bonobo  ===============
                    Chimp  ===============
                    Human  ===============
                   Tenrec  ===============
                  Tarsier  ===============
               Tree shrew  ===============
                 Hedgehog  ===============
                     Pika  ===============
                Zebrafish  ===============
            X. tropicalis  ===============
                      Cow  ===============
                  Chicken  ===============
                    Shrew  ===============
                 Elephant  ===============
                 Squirrel  ===============
                      Pig  ===============
                   Rabbit  ===============
         Chinese pangolin  ===============
                 Bushbaby  ===============
                   Beaver  ===============
     Malayan flying lemur  ===============
            GCF_003668045  ===============
                      Rat  ===============

Alignment block 6 of 162 in window, 56693494 - 56694093, 600 bps 
B D                 Mouse  atacaagctgcaggattggc------tgtctggggtctttccctgaaggaaccgatagctttattccc--
B D                   Rat  acagaggctgaaggaatggcccagtctgtgtggggtctttccctgaaggaaccaatgactttgttcccat
B D            Guinea pig  ======================================================================
B D                 Sheep  ======================================================================
B D                Rhesus  ======================================================================
B D    Hawaiian monk seal  ======================================================================
B D                   Dog  ======================================================================
B D                 Horse  ======================================================================
B D              Marmoset  ======================================================================
B D               Gorilla  ======================================================================
B D                Bonobo  ======================================================================
B D                 Chimp  ======================================================================
B D                 Human  ======================================================================
B D                Tenrec  ======================================================================
B D               Tarsier  ======================================================================
B D            Tree shrew  ======================================================================
B D              Hedgehog  ======================================================================
B D                  Pika  ======================================================================
B D             Zebrafish  ======================================================================
B D         X. tropicalis  ======================================================================
B D                   Cow  ======================================================================
B D               Chicken  ======================================================================
B D                 Shrew  ======================================================================
B D              Elephant  ======================================================================
B D              Squirrel  ======================================================================
B D                   Pig  ======================================================================
B D                Rabbit  ======================================================================
B D      Chinese pangolin  ======================================================================
B D              Bushbaby  ======================================================================
                  Beaver  ======================================================================
B D  Malayan flying lemur  ======================================================================
           GCF_003668045  ======================================================================

                    Mouse  ---tccttatctcattcagcacaaga-------ccaactgtatttagttactttttattttctgtgagga
                      Rat  ttctctttatctctttcagcacaagatctggtaccaactatattcagttactttttattttctgtgaaga
               Guinea pig  ======================================================================
                    Sheep  ======================================================================
                   Rhesus  ======================================================================
       Hawaiian monk seal  ======================================================================
                      Dog  ======================================================================
                    Horse  ======================================================================
                 Marmoset  ======================================================================
                  Gorilla  ======================================================================
                   Bonobo  ======================================================================
                    Chimp  ======================================================================
                    Human  ======================================================================
                   Tenrec  ======================================================================
                  Tarsier  ======================================================================
               Tree shrew  ======================================================================
                 Hedgehog  ======================================================================
                     Pika  ======================================================================
                Zebrafish  ======================================================================
            X. tropicalis  ======================================================================
                      Cow  ======================================================================
                  Chicken  ======================================================================
                    Shrew  ======================================================================
                 Elephant  ======================================================================
                 Squirrel  ======================================================================
                      Pig  ======================================================================
                   Rabbit  ======================================================================
         Chinese pangolin  ======================================================================
                 Bushbaby  ======================================================================
                   Beaver  ======================================================================
     Malayan flying lemur  ======================================================================
            GCF_003668045  ======================================================================

                    Mouse  gacaccatggccaacgcagcttgtaaaagaaagcatttaatttggggcttgtttaatgtcagaagatgag
                      Rat  gac--catggccaaggcagcttgtaaaat----cacttcatttgggccttgtttaatttcagaggatgag
               Guinea pig  ======================================================================
                    Sheep  ======================================================================
                   Rhesus  ======================================================================
       Hawaiian monk seal  ======================================================================
                      Dog  ======================================================================
                    Horse  ======================================================================
                 Marmoset  ======================================================================
                  Gorilla  ======================================================================
                   Bonobo  ======================================================================
                    Chimp  ======================================================================
                    Human  ======================================================================
                   Tenrec  ======================================================================
                  Tarsier  ======================================================================
               Tree shrew  ======================================================================
                 Hedgehog  ======================================================================
                     Pika  ======================================================================
                Zebrafish  ======================================================================
            X. tropicalis  ======================================================================
                      Cow  ======================================================================
                  Chicken  ======================================================================
                    Shrew  ======================================================================
                 Elephant  ======================================================================
                 Squirrel  ======================================================================
                      Pig  ======================================================================
                   Rabbit  ======================================================================
         Chinese pangolin  ======================================================================
                 Bushbaby  ======================================================================
                   Beaver  ======================================================================
     Malayan flying lemur  ======================================================================
            GCF_003668045  ======================================================================

                    Mouse  tagggtttatgaccatcatagcaggaagcatggcagcaatcagacagcatggtgctggagcagtagccaa
                      Rat  tagagtctatgaccatcatagcaggaagcatggcagcaatcaggcaacatggtgctggagcagacgccaa
               Guinea pig  ======================================================================
                    Sheep  ======================================================================
                   Rhesus  ======================================================================
       Hawaiian monk seal  ======================================================================
                      Dog  ======================================================================
                    Horse  ======================================================================
                 Marmoset  ======================================================================
                  Gorilla  ======================================================================
                   Bonobo  ======================================================================
                    Chimp  ======================================================================
                    Human  ======================================================================
                   Tenrec  ======================================================================
                  Tarsier  ======================================================================
               Tree shrew  ======================================================================
                 Hedgehog  ======================================================================
                     Pika  ======================================================================
                Zebrafish  ======================================================================
            X. tropicalis  ======================================================================
                      Cow  ======================================================================
                  Chicken  ======================================================================
                    Shrew  ======================================================================
                 Elephant  ======================================================================
                 Squirrel  ======================================================================
                      Pig  ======================================================================
                   Rabbit  ======================================================================
         Chinese pangolin  ======================================================================
                 Bushbaby  ======================================================================
                   Beaver  ======================================================================
     Malayan flying lemur  ======================================================================
            GCF_003668045  ======================================================================

                    Mouse  gaacttgcatctcatcatagg-ttggatacagagacacagagctaactggaaactgatggcttttaaaat
                      Rat  gaacgtgcatctcatcatagggttggatgcagagacagagagctaactggaaac----------------
               Guinea pig  ======================================================================
                    Sheep  ======================================================================
                   Rhesus  ======================================================================
       Hawaiian monk seal  ======================================================================
                      Dog  ======================================================================
                    Horse  ======================================================================
                 Marmoset  ======================================================================
                  Gorilla  ======================================================================
                   Bonobo  ======================================================================
                    Chimp  ======================================================================
                    Human  ======================================================================
                   Tenrec  ======================================================================
                  Tarsier  ======================================================================
               Tree shrew  ======================================================================
                 Hedgehog  ======================================================================
                     Pika  ======================================================================
                Zebrafish  ======================================================================
            X. tropicalis  ======================================================================
                      Cow  ======================================================================
                  Chicken  ======================================================================
                    Shrew  ======================================================================
                 Elephant  ======================================================================
                 Squirrel  ======================================================================
                      Pig  ======================================================================
                   Rabbit  ======================================================================
         Chinese pangolin  ======================================================================
                 Bushbaby  ======================================================================
                   Beaver  ======================================================================
     Malayan flying lemur  ======================================================================
            GCF_003668045  ======================================================================

                    Mouse  ctgaaagcccactcactaaatgacataactcctccaacaatgccagtcctcctaatccttacgggtttca
                      Rat  ctga--------cccctaagtgacacacctcctccaacaaggccacacctcctaatccttaccagtttca
               Guinea pig  ======================================================================
                    Sheep  ======================================================================
                   Rhesus  ======================================================================
       Hawaiian monk seal  ======================================================================
                      Dog  ======================================================================
                    Horse  ======================================================================
                 Marmoset  ======================================================================
                  Gorilla  ======================================================================
                   Bonobo  ======================================================================
                    Chimp  ======================================================================
                    Human  ======================================================================
                   Tenrec  ======================================================================
                  Tarsier  ======================================================================
               Tree shrew  ======================================================================
                 Hedgehog  ======================================================================
                     Pika  ======================================================================
                Zebrafish  ======================================================================
            X. tropicalis  ======================================================================
                      Cow  ======================================================================
                  Chicken  ======================================================================
                    Shrew  ======================================================================
                 Elephant  ======================================================================
                 Squirrel  ======================================================================
                      Pig  ======================================================================
                   Rabbit  ======================================================================
         Chinese pangolin  ======================================================================
                 Bushbaby  ======================================================================
                   Beaver  ======================================================================
     Malayan flying lemur  ======================================================================
            GCF_003668045  ======================================================================

                    Mouse  ctaacaggttaccaagtattcaagtgtatgaatctatgagggacattgtcatacagaccaaggtcacctg
                      Rat  ctaactggttaccaagcattcaagcctgtgaacctatgggggccattctccttcagaccaaggt------
               Guinea pig  ======================================================================
                    Sheep  ======================================================================
                   Rhesus  ======================================================================
       Hawaiian monk seal  ======================================================================
                      Dog  ======================================================================
                    Horse  ======================================================================
                 Marmoset  ======================================================================
                  Gorilla  ======================================================================
                   Bonobo  ======================================================================
                    Chimp  ======================================================================
                    Human  ======================================================================
                   Tenrec  ======================================================================
                  Tarsier  ======================================================================
               Tree shrew  ======================================================================
                 Hedgehog  ======================================================================
                     Pika  ======================================================================
                Zebrafish  ======================================================================
            X. tropicalis  ======================================================================
                      Cow  ======================================================================
                  Chicken  ======================================================================
                    Shrew  ======================================================================
                 Elephant  ======================================================================
                 Squirrel  ======================================================================
                      Pig  ======================================================================
                   Rabbit  ======================================================================
         Chinese pangolin  ======================================================================
                 Bushbaby  ======================================================================
                   Beaver  ======================================================================
     Malayan flying lemur  ======================================================================
            GCF_003668045  ======================================================================

                    Mouse  cagttaagatcatacaaggtgaccagaaatacaaattgatttgtagattcatgggttccctgctggtgca
                      Rat  -----aagatcatacaaggaaaccaaaggtccaaattgattt--------atgggttccatgttagtgag
               Guinea pig  ======================================================================
                    Sheep  ======================================================================
                   Rhesus  ======================================================================
       Hawaiian monk seal  ======================================================================
                      Dog  ======================================================================
                    Horse  ======================================================================
                 Marmoset  ======================================================================
                  Gorilla  ======================================================================
                   Bonobo  ======================================================================
                    Chimp  ======================================================================
                    Human  ======================================================================
                   Tenrec  ======================================================================
                  Tarsier  ======================================================================
               Tree shrew  ======================================================================
                 Hedgehog  ======================================================================
                     Pika  ======================================================================
                Zebrafish  ======================================================================
            X. tropicalis  ======================================================================
                      Cow  ======================================================================
                  Chicken  ======================================================================
                    Shrew  ======================================================================
                 Elephant  ======================================================================
                 Squirrel  ======================================================================
                      Pig  ======================================================================
                   Rabbit  ======================================================================
         Chinese pangolin  ======================================================================
                 Bushbaby  ======================================================================
                   Beaver  ======================================================================
     Malayan flying lemur  ======================================================================
            GCF_003668045  ======================================================================

                    Mouse  catagcatacagactttgaatgctgtaactaagtatat--cttaatccataccacccctag
                      Rat  catagcacatagactttgagtgctgtaactaagtatatgccttagttcatactgattctag
               Guinea pig  =============================================================
                    Sheep  =============================================================
                   Rhesus  =============================================================
       Hawaiian monk seal  =============================================================
                      Dog  =============================================================
                    Horse  =============================================================
                 Marmoset  =============================================================
                  Gorilla  =============================================================
                   Bonobo  =============================================================
                    Chimp  =============================================================
                    Human  =============================================================
                   Tenrec  =============================================================
                  Tarsier  =============================================================
               Tree shrew  =============================================================
                 Hedgehog  =============================================================
                     Pika  =============================================================
                Zebrafish  =============================================================
            X. tropicalis  =============================================================
                      Cow  =============================================================
                  Chicken  =============================================================
                    Shrew  =============================================================
                 Elephant  =============================================================
                 Squirrel  =============================================================
                      Pig  =============================================================
                   Rabbit  =============================================================
         Chinese pangolin  =============================================================
                 Bushbaby  =============================================================
                   Beaver  =============================================================
     Malayan flying lemur  =============================================================
            GCF_003668045  =============================================================

Alignment block 7 of 162 in window, 56694094 - 56694332, 239 bps 
B D                 Mouse  gagcaat---------gggcagc-aaaag---atatggagatcaagaagtacaggtagaaaaaaaccgag
B D                   Rat  gagcaattatgtctatgggcagc-aggggtggatatggagatcaagtagtataggtagaaagaa-ttaag
                   Beaver  ggacaat---------ggacagctctaagtggatgtggaaacaggacagtgcacattataaaagaccaag
B D            Guinea pig  ======================================================================
B D                 Sheep  ======================================================================
B D                Rhesus  ======================================================================
B D    Hawaiian monk seal  ======================================================================
B D                   Dog  ======================================================================
B D                 Horse  ======================================================================
B D              Marmoset  ======================================================================
B D               Gorilla  ======================================================================
B D                Bonobo  ======================================================================
B D                 Chimp  ======================================================================
B D                 Human  ======================================================================
B D                Tenrec  ======================================================================
B D               Tarsier  ======================================================================
B D            Tree shrew  ======================================================================
B D              Hedgehog  ======================================================================
B D                  Pika  ======================================================================
B D             Zebrafish  ======================================================================
B D         X. tropicalis  ======================================================================
B D                   Cow  ======================================================================
B D               Chicken  ======================================================================
B D                 Shrew  ======================================================================
B D              Elephant  ======================================================================
B D              Squirrel  ======================================================================
B D                   Pig  ======================================================================
B D                Rabbit  ======================================================================
B D      Chinese pangolin  ======================================================================
B D              Bushbaby  ======================================================================
B D  Malayan flying lemur  ======================================================================
           GCF_003668045  ======================================================================

                    Mouse  cttgtcccaagggtaggaaagtatctccttgtaaagtatactgcatatatttctccctta-------aaa
                      Rat  tttgtcccaggggtaaacaagtatctccttgtaaagtatactgcatatatttctcccttg-------aaa
                   Beaver  ctcatcctgagggtaaacaactttcttttgagggagtatactacttatatttccccccaacaacaacaac
               Guinea pig  ======================================================================
                    Sheep  ======================================================================
                   Rhesus  ======================================================================
       Hawaiian monk seal  ======================================================================
                      Dog  ======================================================================
                    Horse  ======================================================================
                 Marmoset  ======================================================================
                  Gorilla  ======================================================================
                   Bonobo  ======================================================================
                    Chimp  ======================================================================
                    Human  ======================================================================
                   Tenrec  ======================================================================
                  Tarsier  ======================================================================
               Tree shrew  ======================================================================
                 Hedgehog  ======================================================================
                     Pika  ======================================================================
                Zebrafish  ======================================================================
            X. tropicalis  ======================================================================
                      Cow  ======================================================================
                  Chicken  ======================================================================
                    Shrew  ======================================================================
                 Elephant  ======================================================================
                 Squirrel  ======================================================================
                      Pig  ======================================================================
                   Rabbit  ======================================================================
         Chinese pangolin  ======================================================================
                 Bushbaby  ======================================================================
     Malayan flying lemur  ======================================================================
            GCF_003668045  ======================================================================

                    Mouse  gaacatatactggagacag-------tattgggacttacctt--acagaacagttagatacctttaacta
                      Rat  gaacatatactggggacagatgggtgtattgggacatacctt--acagaccggttagataccttttctta
                   Beaver  gaaaacacactagggctgggtgtgctttctagggcacaccctgcacacaacaattggagaattccaccta
               Guinea pig  ======================================================================
                    Sheep  ======================================================================
                   Rhesus  ======================================================================
       Hawaiian monk seal  ======================================================================
                      Dog  ======================================================================
                    Horse  ======================================================================
                 Marmoset  ======================================================================
                  Gorilla  ======================================================================
                   Bonobo  ======================================================================
                    Chimp  ======================================================================
                    Human  ======================================================================
                   Tenrec  ======================================================================
                  Tarsier  ======================================================================
               Tree shrew  ======================================================================
                 Hedgehog  ======================================================================
                     Pika  ======================================================================
                Zebrafish  ======================================================================
            X. tropicalis  ======================================================================
                      Cow  ======================================================================
                  Chicken  ======================================================================
                    Shrew  ======================================================================
                 Elephant  ======================================================================
                 Squirrel  ======================================================================
                      Pig  ======================================================================
                   Rabbit  ======================================================================
         Chinese pangolin  ======================================================================
                 Bushbaby  ======================================================================
     Malayan flying lemur  ======================================================================
            GCF_003668045  ======================================================================

                    Mouse  gtggtataaac--taggaacagtcaggtatggtttggtgaaatgggaaa-ctataaaattg
                      Rat  gttgtataaat--tagggacagtaaggtatggtttggtgaaatgggaaaactgtaaagttg
                   Beaver  agggtgtgaatgataagaacagtgacacctggctgggaaaaatagaaac-caataaaaatg
               Guinea pig  =============================================================
                    Sheep  =============================================================
                   Rhesus  =============================================================
       Hawaiian monk seal  =============================================================
                      Dog  =============================================================
                    Horse  =============================================================
                 Marmoset  =============================================================
                  Gorilla  =============================================================
                   Bonobo  =============================================================
                    Chimp  =============================================================
                    Human  =============================================================
                   Tenrec  =============================================================
                  Tarsier  =============================================================
               Tree shrew  =============================================================
                 Hedgehog  =============================================================
                     Pika  =============================================================
                Zebrafish  =============================================================
            X. tropicalis  =============================================================
                      Cow  =============================================================
                  Chicken  =============================================================
                    Shrew  =============================================================
                 Elephant  =============================================================
                 Squirrel  =============================================================
                      Pig  =============================================================
                   Rabbit  =============================================================
         Chinese pangolin  =============================================================
                 Bushbaby  =============================================================
     Malayan flying lemur  =============================================================
            GCF_003668045  =============================================================

Inserts between block 7 and 8 in window
                  Beaver 258bp

Alignment block 8 of 162 in window, 56694333 - 56694711, 379 bps 
B D                 Mouse  ggaaattattcttccagcccagtactctttataacatccaggtgtgactggtaaagatgccagatagttt
B D                   Rat  ggagagtattcaaacagcccaacactcttt-caacagccaggtgtgactggtaaggattctagatagttt
B D            Guinea pig  ======================================================================
B D                 Sheep  ======================================================================
B D                Rhesus  ======================================================================
B D    Hawaiian monk seal  ======================================================================
B D                   Dog  ======================================================================
B D                 Horse  ======================================================================
B D              Marmoset  ======================================================================
B D               Gorilla  ======================================================================
B D                Bonobo  ======================================================================
B D                 Chimp  ======================================================================
B D                 Human  ======================================================================
B D                Tenrec  ======================================================================
B D               Tarsier  ======================================================================
B D            Tree shrew  ======================================================================
B D              Hedgehog  ======================================================================
B D                  Pika  ======================================================================
B D             Zebrafish  ======================================================================
B D         X. tropicalis  ======================================================================
B D                   Cow  ======================================================================
B D               Chicken  ======================================================================
B D                 Shrew  ======================================================================
B D              Elephant  ======================================================================
B D              Squirrel  ======================================================================
B D                   Pig  ======================================================================
B D                Rabbit  ======================================================================
B D      Chinese pangolin  ======================================================================
B D              Bushbaby  ======================================================================
                  Beaver  ======================================================================
B D  Malayan flying lemur  ======================================================================
           GCF_003668045  ======================================================================

                    Mouse  atgaagaatgattgtggatcatggagaccctcacatagggtggtagcctcacctttatgctgctgtaccc
                      Rat  atgaagaatgactgtggattatggagaccctcacatggggtggtagccccaccttcacgctgctgttccc
               Guinea pig  ======================================================================
                    Sheep  ======================================================================
                   Rhesus  ======================================================================
       Hawaiian monk seal  ======================================================================
                      Dog  ======================================================================
                    Horse  ======================================================================
                 Marmoset  ======================================================================
                  Gorilla  ======================================================================
                   Bonobo  ======================================================================
                    Chimp  ======================================================================
                    Human  ======================================================================
                   Tenrec  ======================================================================
                  Tarsier  ======================================================================
               Tree shrew  ======================================================================
                 Hedgehog  ======================================================================
                     Pika  ======================================================================
                Zebrafish  ======================================================================
            X. tropicalis  ======================================================================
                      Cow  ======================================================================
                  Chicken  ======================================================================
                    Shrew  ======================================================================
                 Elephant  ======================================================================
                 Squirrel  ======================================================================
                      Pig  ======================================================================
                   Rabbit  ======================================================================
         Chinese pangolin  ======================================================================
                 Bushbaby  ======================================================================
                   Beaver  ======================================================================
     Malayan flying lemur  ======================================================================
            GCF_003668045  ======================================================================

                    Mouse  aatattgatacattgaccaagaaaaatgatataggttgtggcatctggttaaactgtattggaatgtgct
                      Rat  aatatggctacattggccaagaaaagtgatatagattgtggcatcttgttaa-ctgtattggaatatgct
               Guinea pig  ======================================================================
                    Sheep  ======================================================================
                   Rhesus  ======================================================================
       Hawaiian monk seal  ======================================================================
                      Dog  ======================================================================
                    Horse  ======================================================================
                 Marmoset  ======================================================================
                  Gorilla  ======================================================================
                   Bonobo  ======================================================================
                    Chimp  ======================================================================
                    Human  ======================================================================
                   Tenrec  ======================================================================
                  Tarsier  ======================================================================
               Tree shrew  ======================================================================
                 Hedgehog  ======================================================================
                     Pika  ======================================================================
                Zebrafish  ======================================================================
            X. tropicalis  ======================================================================
                      Cow  ======================================================================
                  Chicken  ======================================================================
                    Shrew  ======================================================================
                 Elephant  ======================================================================
                 Squirrel  ======================================================================
                      Pig  ======================================================================
                   Rabbit  ======================================================================
         Chinese pangolin  ======================================================================
                 Bushbaby  ======================================================================
                   Beaver  ======================================================================
     Malayan flying lemur  ======================================================================
            GCF_003668045  ======================================================================

                    Mouse  aacattttcttagaattgcttagctactaagtcccaaggccaccttgcatttggttgaaataaatggtag
                      Rat  aactttttcttagtaatccttagctactaagtcccaaggccaacttgtgtttggttgaaatagatggtag
               Guinea pig  ======================================================================
                    Sheep  ======================================================================
                   Rhesus  ======================================================================
       Hawaiian monk seal  ======================================================================
                      Dog  ======================================================================
                    Horse  ======================================================================
                 Marmoset  ======================================================================
                  Gorilla  ======================================================================
                   Bonobo  ======================================================================
                    Chimp  ======================================================================
                    Human  ======================================================================
                   Tenrec  ======================================================================
                  Tarsier  ======================================================================
               Tree shrew  ======================================================================
                 Hedgehog  ======================================================================
                     Pika  ======================================================================
                Zebrafish  ======================================================================
            X. tropicalis  ======================================================================
                      Cow  ======================================================================
                  Chicken  ======================================================================
                    Shrew  ======================================================================
                 Elephant  ======================================================================
                 Squirrel  ======================================================================
                      Pig  ======================================================================
                   Rabbit  ======================================================================
         Chinese pangolin  ======================================================================
                 Bushbaby  ======================================================================
                   Beaver  ======================================================================
     Malayan flying lemur  ======================================================================
            GCF_003668045  ======================================================================

                    Mouse  aggactctcagaggtcctgataaacctttct-taaaaagtttcatgatttaatgctagcccttgaatgcc
                      Rat  agggttctcagatatcctgacaagcctttgtacaaaaagtttcatgatttaatgctagtccttgaatgcc
               Guinea pig  ======================================================================
                    Sheep  ======================================================================
                   Rhesus  ======================================================================
       Hawaiian monk seal  ======================================================================
                      Dog  ======================================================================
                    Horse  ======================================================================
                 Marmoset  ======================================================================
                  Gorilla  ======================================================================
                   Bonobo  ======================================================================
                    Chimp  ======================================================================
                    Human  ======================================================================
                   Tenrec  ======================================================================
                  Tarsier  ======================================================================
               Tree shrew  ======================================================================
                 Hedgehog  ======================================================================
                     Pika  ======================================================================
                Zebrafish  ======================================================================
            X. tropicalis  ======================================================================
                      Cow  ======================================================================
                  Chicken  ======================================================================
                    Shrew  ======================================================================
                 Elephant  ======================================================================
                 Squirrel  ======================================================================
                      Pig  ======================================================================
                   Rabbit  ======================================================================
         Chinese pangolin  ======================================================================
                 Bushbaby  ======================================================================
                   Beaver  ======================================================================
     Malayan flying lemur  ======================================================================
            GCF_003668045  ======================================================================

                    Mouse  ttatagatttggaaaagcatctgaaaaaaa
                      Rat  ttatagatttgaaaaaa-----aaaaaaaa
               Guinea pig  ==============================
                    Sheep  ==============================
                   Rhesus  ==============================
       Hawaiian monk seal  ==============================
                      Dog  ==============================
                    Horse  ==============================
                 Marmoset  ==============================
                  Gorilla  ==============================
                   Bonobo  ==============================
                    Chimp  ==============================
                    Human  ==============================
                   Tenrec  ==============================
                  Tarsier  ==============================
               Tree shrew  ==============================
                 Hedgehog  ==============================
                     Pika  ==============================
                Zebrafish  ==============================
            X. tropicalis  ==============================
                      Cow  ==============================
                  Chicken  ==============================
                    Shrew  ==============================
                 Elephant  ==============================
                 Squirrel  ==============================
                      Pig  ==============================
                   Rabbit  ==============================
         Chinese pangolin  ==============================
                 Bushbaby  ==============================
                   Beaver  ==============================
     Malayan flying lemur  ==============================
            GCF_003668045  ==============================

Alignment block 9 of 162 in window, 56694712 - 56695279, 568 bps 
B D                 Mouse  aaaaacaccaaaacactgcatttaaaataaagtcacaggctggagagatggctc-agcggttaagaccat
B D                   Rat  acaaccagcaaaccactgcatttaaaata------tgggctggagagatggctc-agcagttaggagcac
                   Beaver  aaaataaccaaagc-----------aaga------tggactggaggcatggcttaagcagt--agagcac
B D            Guinea pig  ======================================================================
B D                 Sheep  ======================================================================
B D                Rhesus  ======================================================================
B D    Hawaiian monk seal  ======================================================================
B D                   Dog  ======================================================================
B D                 Horse  ======================================================================
B D              Marmoset  ======================================================================
B D               Gorilla  ======================================================================
B D                Bonobo  ======================================================================
B D                 Chimp  ======================================================================
B D                 Human  ======================================================================
B D                Tenrec  ======================================================================
B D               Tarsier  ======================================================================
B D            Tree shrew  ======================================================================
B D              Hedgehog  ======================================================================
B D                  Pika  ======================================================================
B D             Zebrafish  ======================================================================
B D         X. tropicalis  ======================================================================
B D                   Cow  ======================================================================
B D               Chicken  ======================================================================
B D                 Shrew  ======================================================================
B D              Elephant  ======================================================================
B D              Squirrel  ======================================================================
B D                   Pig  ======================================================================
B D                Rabbit  ======================================================================
B D      Chinese pangolin  ======================================================================
B D              Bushbaby  ======================================================================
B D  Malayan flying lemur  ======================================================================
           GCF_003668045  ======================================================================

                    Mouse  tgactattcttc----cagaggtcctgagttcaatccccagcaaccatatggtggctcacaaccatctgt
                      Rat  t-actgctcttc----cagaggtcctgagctcaattcccagcaaccacatggtgactcacaaccatctgt
                   Beaver  c---tgctttgcagggcagaagccctgggttcaaaccccagta-------------ccacaaaaa-----
               Guinea pig  ======================================================================
                    Sheep  ======================================================================
                   Rhesus  ======================================================================
       Hawaiian monk seal  ======================================================================
                      Dog  ======================================================================
                    Horse  ======================================================================
                 Marmoset  ======================================================================
                  Gorilla  ======================================================================
                   Bonobo  ======================================================================
                    Chimp  ======================================================================
                    Human  ======================================================================
                   Tenrec  ======================================================================
                  Tarsier  ======================================================================
               Tree shrew  ======================================================================
                 Hedgehog  ======================================================================
                     Pika  ======================================================================
                Zebrafish  ======================================================================
            X. tropicalis  ======================================================================
                      Cow  ======================================================================
                  Chicken  ======================================================================
                    Shrew  ======================================================================
                 Elephant  ======================================================================
                 Squirrel  ======================================================================
                      Pig  ======================================================================
                   Rabbit  ======================================================================
         Chinese pangolin  ======================================================================
                 Bushbaby  ======================================================================
     Malayan flying lemur  ======================================================================
            GCF_003668045  ======================================================================

                    Mouse  aaagggacctgatgccctcttctggtgtgtctgaagagagtgacagtg--tactcacatacattaaataa
                      Rat  gatgggatcagatgcccccttctggtgtgtctgaagggagtgacagtg--tactcacatacataaaataa
                   Beaver  ---------------------------------aaaaaaatcataaaggctccctacatgcataaaaaaa
               Guinea pig  ======================================================================
                    Sheep  ======================================================================
                   Rhesus  ======================================================================
       Hawaiian monk seal  ======================================================================
                      Dog  ======================================================================
                    Horse  ======================================================================
                 Marmoset  ======================================================================
                  Gorilla  ======================================================================
                   Bonobo  ======================================================================
                    Chimp  ======================================================================
                    Human  ======================================================================
                   Tenrec  ======================================================================
                  Tarsier  ======================================================================
               Tree shrew  ======================================================================
                 Hedgehog  ======================================================================
                     Pika  ======================================================================
                Zebrafish  ======================================================================
            X. tropicalis  ======================================================================
                      Cow  ======================================================================
                  Chicken  ======================================================================
                    Shrew  ======================================================================
                 Elephant  ======================================================================
                 Squirrel  ======================================================================
                      Pig  ======================================================================
                   Rabbit  ======================================================================
         Chinese pangolin  ======================================================================
                 Bushbaby  ======================================================================
     Malayan flying lemur  ======================================================================
            GCF_003668045  ======================================================================

                    Mouse  ataaatcttaaaaa-------caaagtcatcctgtaaaaaggatcatcccagaagctgtaa----gttgt
                      Rat  ataaatctttaaaaagtaaaataaagtcactatgtaaaaaggatcatcccagaagctgcaa----gttgt
                   Beaver  gaatacttccaaaa---------------------------------------agctataaggttgttaa
               Guinea pig  ======================================================================
                    Sheep  ======================================================================
                   Rhesus  ======================================================================
       Hawaiian monk seal  ======================================================================
                      Dog  ======================================================================
                    Horse  ======================================================================
                 Marmoset  ======================================================================
                  Gorilla  ======================================================================
                   Bonobo  ======================================================================
                    Chimp  ======================================================================
                    Human  ======================================================================
                   Tenrec  ======================================================================
                  Tarsier  ======================================================================
               Tree shrew  ======================================================================
                 Hedgehog  ======================================================================
                     Pika  ======================================================================
                Zebrafish  ======================================================================
            X. tropicalis  ======================================================================
                      Cow  ======================================================================
                  Chicken  ======================================================================
                    Shrew  ======================================================================
                 Elephant  ======================================================================
                 Squirrel  ======================================================================
                      Pig  ======================================================================
                   Rabbit  ======================================================================
         Chinese pangolin  ======================================================================
                 Bushbaby  ======================================================================
     Malayan flying lemur  ======================================================================
            GCF_003668045  ======================================================================

                    Mouse  atgaaaatcctagtgccagccatcagccacctccctatgagttgttagacagggaggactctgaggtcac
                      Rat  atgaaaatcctagtgccaggcaccagtcacctccctatgagatgttggacagggaggactctgaggtcac
                   Beaver  ataaaaatattggtgccaga-gttagctacctccctgtgagttgtggaccagaggggtccctgaggtcac
               Guinea pig  ======================================================================
                    Sheep  ======================================================================
                   Rhesus  ======================================================================
       Hawaiian monk seal  ======================================================================
                      Dog  ======================================================================
                    Horse  ======================================================================
                 Marmoset  ======================================================================
                  Gorilla  ======================================================================
                   Bonobo  ======================================================================
                    Chimp  ======================================================================
                    Human  ======================================================================
                   Tenrec  ======================================================================
                  Tarsier  ======================================================================
               Tree shrew  ======================================================================
                 Hedgehog  ======================================================================
                     Pika  ======================================================================
                Zebrafish  ======================================================================
            X. tropicalis  ======================================================================
                      Cow  ======================================================================
                  Chicken  ======================================================================
                    Shrew  ======================================================================
                 Elephant  ======================================================================
                 Squirrel  ======================================================================
                      Pig  ======================================================================
                   Rabbit  ======================================================================
         Chinese pangolin  ======================================================================
                 Bushbaby  ======================================================================
     Malayan flying lemur  ======================================================================
            GCF_003668045  ======================================================================

                    Mouse  ccaaacagtaca----agctgttgtcacggctgttgattgcacatcagaactgggtgatacattcctatt
                      Rat  ctatacggtaca----agctattgccactgctattggttgcacattagagctgggtggtaagttcctatt
                   Beaver  ccacacttaacactacacatactgccactgtagttggt--cacatgacaactggaccataagtccctatt
               Guinea pig  ======================================================================
                    Sheep  ======================================================================
                   Rhesus  ======================================================================
       Hawaiian monk seal  ======================================================================
                      Dog  ======================================================================
                    Horse  ======================================================================
                 Marmoset  ======================================================================
                  Gorilla  ======================================================================
                   Bonobo  ======================================================================
                    Chimp  ======================================================================
                    Human  ======================================================================
                   Tenrec  ======================================================================
                  Tarsier  ======================================================================
               Tree shrew  ======================================================================
                 Hedgehog  ======================================================================
                     Pika  ======================================================================
                Zebrafish  ======================================================================
            X. tropicalis  ======================================================================
                      Cow  ======================================================================
                  Chicken  ======================================================================
                    Shrew  ======================================================================
                 Elephant  ======================================================================
                 Squirrel  ======================================================================
                      Pig  ======================================================================
                   Rabbit  ======================================================================
         Chinese pangolin  ======================================================================
                 Bushbaby  ======================================================================
     Malayan flying lemur  ======================================================================
            GCF_003668045  ======================================================================

                    Mouse  actga-gacaatacgtgctctgattttagaacctgcagaaatcaagctatg-------------------
                      Rat  gctgaagatatcacatgctctgattttagaacctgcagaaatcaagctatgattgagctgaatgcatcac
                   Beaver  gctgaagtcaccacatgctctacttgcagggcatggaaaaattaa-ctgggaccaaactggaagc-----
               Guinea pig  ======================================================================
                    Sheep  ======================================================================
                   Rhesus  ======================================================================
       Hawaiian monk seal  ======================================================================
                      Dog  ======================================================================
                    Horse  ======================================================================
                 Marmoset  ======================================================================
                  Gorilla  ======================================================================
                   Bonobo  ======================================================================
                    Chimp  ======================================================================
                    Human  ======================================================================
                   Tenrec  ======================================================================
                  Tarsier  ======================================================================
               Tree shrew  ======================================================================
                 Hedgehog  ======================================================================
                     Pika  ======================================================================
                Zebrafish  ======================================================================
            X. tropicalis  ======================================================================
                      Cow  ======================================================================
                  Chicken  ======================================================================
                    Shrew  ======================================================================
                 Elephant  ======================================================================
                 Squirrel  ======================================================================
                      Pig  ======================================================================
                   Rabbit  ======================================================================
         Chinese pangolin  ======================================================================
                 Bushbaby  ======================================================================
     Malayan flying lemur  ======================================================================
            GCF_003668045  ======================================================================

                    Mouse  cccccccccaccattgcc----------------------------------------------------
                      Rat  cacaccaccaccaccgccgccgccgccgccgccgccgccgccgccgccgccgccgccgccgccgccgccg
                   Beaver  ctcctccatactaag-------------------------------------------------------
               Guinea pig  ======================================================================
                    Sheep  ======================================================================
                   Rhesus  ======================================================================
       Hawaiian monk seal  ======================================================================
                      Dog  ======================================================================
                    Horse  ======================================================================
                 Marmoset  ======================================================================
                  Gorilla  ======================================================================
                   Bonobo  ======================================================================
                    Chimp  ======================================================================
                    Human  ======================================================================
                   Tenrec  ======================================================================
                  Tarsier  ======================================================================
               Tree shrew  ======================================================================
                 Hedgehog  ======================================================================
                     Pika  ======================================================================
                Zebrafish  ======================================================================
            X. tropicalis  ======================================================================
                      Cow  ======================================================================
                  Chicken  ======================================================================
                    Shrew  ======================================================================
                 Elephant  ======================================================================
                 Squirrel  ======================================================================
                      Pig  ======================================================================
                   Rabbit  ======================================================================
         Chinese pangolin  ======================================================================
                 Bushbaby  ======================================================================
     Malayan flying lemur  ======================================================================
            GCF_003668045  ======================================================================

                    Mouse  -----------------------------tggcatctgtagagctggtaggcacca-gaagactgaaagg
                      Rat  ccgccgccgccgtcaccagccctgccacctggtatctgtggagctggtagacacca-ggaggttggaagg
                   Beaver  -----------------------------tagaattcatagtgccagaggtcaccatgcaggctgccaga
               Guinea pig  ======================================================================
                    Sheep  ======================================================================
                   Rhesus  ======================================================================
       Hawaiian monk seal  ======================================================================
                      Dog  ======================================================================
                    Horse  ======================================================================
                 Marmoset  ======================================================================
                  Gorilla  ======================================================================
                   Bonobo  ======================================================================
                    Chimp  ======================================================================
                    Human  ======================================================================
                   Tenrec  ======================================================================
                  Tarsier  ======================================================================
               Tree shrew  ======================================================================
                 Hedgehog  ======================================================================
                     Pika  ======================================================================
                Zebrafish  ======================================================================
            X. tropicalis  ======================================================================
                      Cow  ======================================================================
                  Chicken  ======================================================================
                    Shrew  ======================================================================
                 Elephant  ======================================================================
                 Squirrel  ======================================================================
                      Pig  ======================================================================
                   Rabbit  ======================================================================
         Chinese pangolin  ======================================================================
                 Bushbaby  ======================================================================
     Malayan flying lemur  ======================================================================
            GCF_003668045  ======================================================================

                    Mouse  aaagaactgtttccaacagttt-gttcaactccgcatcctgcgtgttctgctatcagcatgcc
                      Rat  gatgagctgtttccaacagttttgttcagctctgcatcctgggtgttatgttatcagcatgcc
                   Beaver  agaaaattgtctccagtggtcctgctcaactatagcccccatgtgttacaccatcaacgcccc
               Guinea pig  ===============================================================
                    Sheep  ===============================================================
                   Rhesus  ===============================================================
       Hawaiian monk seal  ===============================================================
                      Dog  ===============================================================
                    Horse  ===============================================================
                 Marmoset  ===============================================================
                  Gorilla  ===============================================================
                   Bonobo  ===============================================================
                    Chimp  ===============================================================
                    Human  ===============================================================
                   Tenrec  ===============================================================
                  Tarsier  ===============================================================
               Tree shrew  ===============================================================
                 Hedgehog  ===============================================================
                     Pika  ===============================================================
                Zebrafish  ===============================================================
            X. tropicalis  ===============================================================
                      Cow  ===============================================================
                  Chicken  ===============================================================
                    Shrew  ===============================================================
                 Elephant  ===============================================================
                 Squirrel  ===============================================================
                      Pig  ===============================================================
                   Rabbit  ===============================================================
         Chinese pangolin  ===============================================================
                 Bushbaby  ===============================================================
     Malayan flying lemur  ===============================================================
            GCF_003668045  ===============================================================

Alignment block 10 of 162 in window, 56695280 - 56697035, 1756 bps 
B D                 Mouse  agata--------------gtgaaatagtgacctgactgctatggttgtgaagtggtctgaatgagaacc
B D                   Rat  agataaaatttgcctactggtgaaatagtgacctg----ctatggttgtgaagtggtttaaatgagaatt
B D            Guinea pig  ======================================================================
B D                 Sheep  ======================================================================
B D                Rhesus  ======================================================================
B D    Hawaiian monk seal  ======================================================================
B D                   Dog  ======================================================================
B D                 Horse  ======================================================================
B D              Marmoset  ======================================================================
B D               Gorilla  ======================================================================
B D                Bonobo  ======================================================================
B D                 Chimp  ======================================================================
B D                 Human  ======================================================================
B D                Tenrec  ======================================================================
B D               Tarsier  ======================================================================
B D            Tree shrew  ======================================================================
B D              Hedgehog  ======================================================================
B D                  Pika  ======================================================================
B D             Zebrafish  ======================================================================
B D         X. tropicalis  ======================================================================
B D                   Cow  ======================================================================
B D               Chicken  ======================================================================
B D                 Shrew  ======================================================================
B D              Elephant  ======================================================================
B D              Squirrel  ======================================================================
B D                   Pig  ======================================================================
B D                Rabbit  ======================================================================
B D      Chinese pangolin  ======================================================================
B D              Bushbaby  ======================================================================
                  Beaver  ======================================================================
B D  Malayan flying lemur  ======================================================================
           GCF_003668045  ======================================================================

                    Mouse  cccccctcctctgagactcatagatttgactgctccattcaaagttgatggaactgttttggaaaagact
                      Rat  ctcctctcctctgaggctcatatatttgaatgcttggttcaaagttggtggaactattt-ggaaaagact
               Guinea pig  ======================================================================
                    Sheep  ======================================================================
                   Rhesus  ======================================================================
       Hawaiian monk seal  ======================================================================
                      Dog  ======================================================================
                    Horse  ======================================================================
                 Marmoset  ======================================================================
                  Gorilla  ======================================================================
                   Bonobo  ======================================================================
                    Chimp  ======================================================================
                    Human  ======================================================================
                   Tenrec  ======================================================================
                  Tarsier  ======================================================================
               Tree shrew  ======================================================================
                 Hedgehog  ======================================================================
                     Pika  ======================================================================
                Zebrafish  ======================================================================
            X. tropicalis  ======================================================================
                      Cow  ======================================================================
                  Chicken  ======================================================================
                    Shrew  ======================================================================
                 Elephant  ======================================================================
                 Squirrel  ======================================================================
                      Pig  ======================================================================
                   Rabbit  ======================================================================
         Chinese pangolin  ======================================================================
                 Bushbaby  ======================================================================
                   Beaver  ======================================================================
     Malayan flying lemur  ======================================================================
            GCF_003668045  ======================================================================

                    Mouse  gggaggtgtggccttgttggaggaagtgtgctaccggggttgggatttggggtttcaaaagcccacactg
                      Rat  aagaggtgtggccttgttgaaggaagtgtg------------ggctttgaggtttcaaaaacctatattg
               Guinea pig  ======================================================================
                    Sheep  ======================================================================
                   Rhesus  ======================================================================
       Hawaiian monk seal  ======================================================================
                      Dog  ======================================================================
                    Horse  ======================================================================
                 Marmoset  ======================================================================
                  Gorilla  ======================================================================
                   Bonobo  ======================================================================
                    Chimp  ======================================================================
                    Human  ======================================================================
                   Tenrec  ======================================================================
                  Tarsier  ======================================================================
               Tree shrew  ======================================================================
                 Hedgehog  ======================================================================
                     Pika  ======================================================================
                Zebrafish  ======================================================================
            X. tropicalis  ======================================================================
                      Cow  ======================================================================
                  Chicken  ======================================================================
                    Shrew  ======================================================================
                 Elephant  ======================================================================
                 Squirrel  ======================================================================
                      Pig  ======================================================================
                   Rabbit  ======================================================================
         Chinese pangolin  ======================================================================
                 Bushbaby  ======================================================================
                   Beaver  ======================================================================
     Malayan flying lemur  ======================================================================
            GCF_003668045  ======================================================================

                    Mouse  tacccagttacctttctctcaatct-----ctctctccctctct----cctcttctccctctcccctctc
                      Rat  tacccacttacctttctctttttcttccccctctctccctctcttcttcctctcctccctcctccctcct
               Guinea pig  ======================================================================
                    Sheep  ======================================================================
                   Rhesus  ======================================================================
       Hawaiian monk seal  ======================================================================
                      Dog  ======================================================================
                    Horse  ======================================================================
                 Marmoset  ======================================================================
                  Gorilla  ======================================================================
                   Bonobo  ======================================================================
                    Chimp  ======================================================================
                    Human  ======================================================================
                   Tenrec  ======================================================================
                  Tarsier  ======================================================================
               Tree shrew  ======================================================================
                 Hedgehog  ======================================================================
                     Pika  ======================================================================
                Zebrafish  ======================================================================
            X. tropicalis  ======================================================================
                      Cow  ======================================================================
                  Chicken  ======================================================================
                    Shrew  ======================================================================
                 Elephant  ======================================================================
                 Squirrel  ======================================================================
                      Pig  ======================================================================
                   Rabbit  ======================================================================
         Chinese pangolin  ======================================================================
                 Bushbaby  ======================================================================
                   Beaver  ======================================================================
     Malayan flying lemur  ======================================================================
            GCF_003668045  ======================================================================

                    Mouse  ttcctcttc-------ctctctctctttccttcctctctctcctctcccct------ctctttcctcctt
                      Rat  ctccccttctccctctctttttctcttcccctcttcctcttcctctcccctttctccctcttccctctct
               Guinea pig  ======================================================================
                    Sheep  ======================================================================
                   Rhesus  ======================================================================
       Hawaiian monk seal  ======================================================================
                      Dog  ======================================================================
                    Horse  ======================================================================
                 Marmoset  ======================================================================
                  Gorilla  ======================================================================
                   Bonobo  ======================================================================
                    Chimp  ======================================================================
                    Human  ======================================================================
                   Tenrec  ======================================================================
                  Tarsier  ======================================================================
               Tree shrew  ======================================================================
                 Hedgehog  ======================================================================
                     Pika  ======================================================================
                Zebrafish  ======================================================================
            X. tropicalis  ======================================================================
                      Cow  ======================================================================
                  Chicken  ======================================================================
                    Shrew  ======================================================================
                 Elephant  ======================================================================
                 Squirrel  ======================================================================
                      Pig  ======================================================================
                   Rabbit  ======================================================================
         Chinese pangolin  ======================================================================
                 Bushbaby  ======================================================================
                   Beaver  ======================================================================
     Malayan flying lemur  ======================================================================
            GCF_003668045  ======================================================================

                    Mouse  ccccctctctccctctctcc--------------------------------------------------
                      Rat  ctccctctctccctctctccctctctccctctctccccctttctctctccctctctctttctctccctct
               Guinea pig  ======================================================================
                    Sheep  ======================================================================
                   Rhesus  ======================================================================
       Hawaiian monk seal  ======================================================================
                      Dog  ======================================================================
                    Horse  ======================================================================
                 Marmoset  ======================================================================
                  Gorilla  ======================================================================
                   Bonobo  ======================================================================
                    Chimp  ======================================================================
                    Human  ======================================================================
                   Tenrec  ======================================================================
                  Tarsier  ======================================================================
               Tree shrew  ======================================================================
                 Hedgehog  ======================================================================
                     Pika  ======================================================================
                Zebrafish  ======================================================================
            X. tropicalis  ======================================================================
                      Cow  ======================================================================
                  Chicken  ======================================================================
                    Shrew  ======================================================================
                 Elephant  ======================================================================
                 Squirrel  ======================================================================
                      Pig  ======================================================================
                   Rabbit  ======================================================================
         Chinese pangolin  ======================================================================
                 Bushbaby  ======================================================================
                   Beaver  ======================================================================
     Malayan flying lemur  ======================================================================
            GCF_003668045  ======================================================================

                    Mouse  ----------------------------------------tccctgcctcatgtttgtggaccagatata
                      Rat  ctccctcctcctcctctctccccctctccctctctccctctccctgtctcatgtttgtagaccaggtgta
               Guinea pig  ======================================================================
                    Sheep  ======================================================================
                   Rhesus  ======================================================================
       Hawaiian monk seal  ======================================================================
                      Dog  ======================================================================
                    Horse  ======================================================================
                 Marmoset  ======================================================================
                  Gorilla  ======================================================================
                   Bonobo  ======================================================================
                    Chimp  ======================================================================
                    Human  ======================================================================
                   Tenrec  ======================================================================
                  Tarsier  ======================================================================
               Tree shrew  ======================================================================
                 Hedgehog  ======================================================================
                     Pika  ======================================================================
                Zebrafish  ======================================================================
            X. tropicalis  ======================================================================
                      Cow  ======================================================================
                  Chicken  ======================================================================
                    Shrew  ======================================================================
                 Elephant  ======================================================================
                 Squirrel  ======================================================================
                      Pig  ======================================================================
                   Rabbit  ======================================================================
         Chinese pangolin  ======================================================================
                 Bushbaby  ======================================================================
                   Beaver  ======================================================================
     Malayan flying lemur  ======================================================================
            GCF_003668045  ======================================================================

                    Mouse  actcccatctgcttcttcagtaccatgcctgcctgcctgcctgctgccatgcttcctatcatgatagtca
                      Rat  actcccagctacttcttcagcacagtgcctgcctgcctacctgct--------tcccatcataatgatca
               Guinea pig  ======================================================================
                    Sheep  ======================================================================
                   Rhesus  ======================================================================
       Hawaiian monk seal  ======================================================================
                      Dog  ======================================================================
                    Horse  ======================================================================
                 Marmoset  ======================================================================
                  Gorilla  ======================================================================
                   Bonobo  ======================================================================
                    Chimp  ======================================================================
                    Human  ======================================================================
                   Tenrec  ======================================================================
                  Tarsier  ======================================================================
               Tree shrew  ======================================================================
                 Hedgehog  ======================================================================
                     Pika  ======================================================================
                Zebrafish  ======================================================================
            X. tropicalis  ======================================================================
                      Cow  ======================================================================
                  Chicken  ======================================================================
                    Shrew  ======================================================================
                 Elephant  ======================================================================
                 Squirrel  ======================================================================
                      Pig  ======================================================================
                   Rabbit  ======================================================================
         Chinese pangolin  ======================================================================
                 Bushbaby  ======================================================================
                   Beaver  ======================================================================
     Malayan flying lemur  ======================================================================
            GCF_003668045  ======================================================================

                    Mouse  tggactctagaccctaaattaacctgaacctcaaaattgaatgcttccttgtataagttgccttgtttat
                      Rat  tggactctagtccctaaattaacctgaacctcaaaattaaatgctttcttttataagttgccttgttcat
               Guinea pig  ======================================================================
                    Sheep  ======================================================================
                   Rhesus  ======================================================================
       Hawaiian monk seal  ======================================================================
                      Dog  ======================================================================
                    Horse  ======================================================================
                 Marmoset  ======================================================================
                  Gorilla  ======================================================================
                   Bonobo  ======================================================================
                    Chimp  ======================================================================
                    Human  ======================================================================
                   Tenrec  ======================================================================
                  Tarsier  ======================================================================
               Tree shrew  ======================================================================
                 Hedgehog  ======================================================================
                     Pika  ======================================================================
                Zebrafish  ======================================================================
            X. tropicalis  ======================================================================
                      Cow  ======================================================================
                  Chicken  ======================================================================
                    Shrew  ======================================================================
                 Elephant  ======================================================================
                 Squirrel  ======================================================================
                      Pig  ======================================================================
                   Rabbit  ======================================================================
         Chinese pangolin  ======================================================================
                 Bushbaby  ======================================================================
                   Beaver  ======================================================================
     Malayan flying lemur  ======================================================================
            GCF_003668045  ======================================================================

                    Mouse  ggtgttttt--------ccagggcaatagacaaggtgaaactaactatttttaaaccagatataaggtct
                      Rat  gatagtttttttttttaccaaggaaatagacagggtgaactcgactatatatgtataagatataagatct
               Guinea pig  ======================================================================
                    Sheep  ======================================================================
                   Rhesus  ======================================================================
       Hawaiian monk seal  ======================================================================
                      Dog  ======================================================================
                    Horse  ======================================================================
                 Marmoset  ======================================================================
                  Gorilla  ======================================================================
                   Bonobo  ======================================================================
                    Chimp  ======================================================================
                    Human  ======================================================================
                   Tenrec  ======================================================================
                  Tarsier  ======================================================================
               Tree shrew  ======================================================================
                 Hedgehog  ======================================================================
                     Pika  ======================================================================
                Zebrafish  ======================================================================
            X. tropicalis  ======================================================================
                      Cow  ======================================================================
                  Chicken  ======================================================================
                    Shrew  ======================================================================
                 Elephant  ======================================================================
                 Squirrel  ======================================================================
                      Pig  ======================================================================
                   Rabbit  ======================================================================
         Chinese pangolin  ======================================================================
                 Bushbaby  ======================================================================
                   Beaver  ======================================================================
     Malayan flying lemur  ======================================================================
            GCF_003668045  ======================================================================

                    Mouse  tctccacagaagatatctatgtttggtagcc----tatgcctaggcaaaacttctcactgggacaataaa
                      Rat  tctccacagaaagaatctatgcttagtacctaccataagcctgggcaaaacccctcacttgggcagtaga
               Guinea pig  ======================================================================
                    Sheep  ======================================================================
                   Rhesus  ======================================================================
       Hawaiian monk seal  ======================================================================
                      Dog  ======================================================================
                    Horse  ======================================================================
                 Marmoset  ======================================================================
                  Gorilla  ======================================================================
                   Bonobo  ======================================================================
                    Chimp  ======================================================================
                    Human  ======================================================================
                   Tenrec  ======================================================================
                  Tarsier  ======================================================================
               Tree shrew  ======================================================================
                 Hedgehog  ======================================================================
                     Pika  ======================================================================
                Zebrafish  ======================================================================
            X. tropicalis  ======================================================================
                      Cow  ======================================================================
                  Chicken  ======================================================================
                    Shrew  ======================================================================
                 Elephant  ======================================================================
                 Squirrel  ======================================================================
                      Pig  ======================================================================
                   Rabbit  ======================================================================
         Chinese pangolin  ======================================================================
                 Bushbaby  ======================================================================
                   Beaver  ======================================================================
     Malayan flying lemur  ======================================================================
            GCF_003668045  ======================================================================

                    Mouse  tgataggcctcaataacaaggctattattattgtttggttaaatgtatatactttgcctatcaagttgtc
                      Rat  ttatagtcctttacaatgaggctactattattgctttgataaatgaatatactttgcctatccagttgtc
               Guinea pig  ======================================================================
                    Sheep  ======================================================================
                   Rhesus  ======================================================================
       Hawaiian monk seal  ======================================================================
                      Dog  ======================================================================
                    Horse  ======================================================================
                 Marmoset  ======================================================================
                  Gorilla  ======================================================================
                   Bonobo  ======================================================================
                    Chimp  ======================================================================
                    Human  ======================================================================
                   Tenrec  ======================================================================
                  Tarsier  ======================================================================
               Tree shrew  ======================================================================
                 Hedgehog  ======================================================================
                     Pika  ======================================================================
                Zebrafish  ======================================================================
            X. tropicalis  ======================================================================
                      Cow  ======================================================================
                  Chicken  ======================================================================
                    Shrew  ======================================================================
                 Elephant  ======================================================================
                 Squirrel  ======================================================================
                      Pig  ======================================================================
                   Rabbit  ======================================================================
         Chinese pangolin  ======================================================================
                 Bushbaby  ======================================================================
                   Beaver  ======================================================================
     Malayan flying lemur  ======================================================================
            GCF_003668045  ======================================================================

                    Mouse  ttctaggttacagctactattacacataatggaaggaaattctttttttttttttttttttttgtagtag
                      Rat  ctctaggttacaggtactattatacataatgggaggaaattcctttttttct-------------agtag
               Guinea pig  ======================================================================
                    Sheep  ======================================================================
                   Rhesus  ======================================================================
       Hawaiian monk seal  ======================================================================
                      Dog  ======================================================================
                    Horse  ======================================================================
                 Marmoset  ======================================================================
                  Gorilla  ======================================================================
                   Bonobo  ======================================================================
                    Chimp  ======================================================================
                    Human  ======================================================================
                   Tenrec  ======================================================================
                  Tarsier  ======================================================================
               Tree shrew  ======================================================================
                 Hedgehog  ======================================================================
                     Pika  ======================================================================
                Zebrafish  ======================================================================
            X. tropicalis  ======================================================================
                      Cow  ======================================================================
                  Chicken  ======================================================================
                    Shrew  ======================================================================
                 Elephant  ======================================================================
                 Squirrel  ======================================================================
                      Pig  ======================================================================
                   Rabbit  ======================================================================
         Chinese pangolin  ======================================================================
                 Bushbaby  ======================================================================
                   Beaver  ======================================================================
     Malayan flying lemur  ======================================================================
            GCF_003668045  ======================================================================

                    Mouse  gagacagttactgcacagacttaaaaagggaccaaactactgagaataaatatctacagtccaaactgtt
                      Rat  gagacagttcctgcagagattcaaaaaatgaccaaactgctgggaataaatatctatacttcatactgtt
               Guinea pig  ======================================================================
                    Sheep  ======================================================================
                   Rhesus  ======================================================================
       Hawaiian monk seal  ======================================================================
                      Dog  ======================================================================
                    Horse  ======================================================================
                 Marmoset  ======================================================================
                  Gorilla  ======================================================================
                   Bonobo  ======================================================================
                    Chimp  ======================================================================
                    Human  ======================================================================
                   Tenrec  ======================================================================
                  Tarsier  ======================================================================
               Tree shrew  ======================================================================
                 Hedgehog  ======================================================================
                     Pika  ======================================================================
                Zebrafish  ======================================================================
            X. tropicalis  ======================================================================
                      Cow  ======================================================================
                  Chicken  ======================================================================
                    Shrew  ======================================================================
                 Elephant  ======================================================================
                 Squirrel  ======================================================================
                      Pig  ======================================================================
                   Rabbit  ======================================================================
         Chinese pangolin  ======================================================================
                 Bushbaby  ======================================================================
                   Beaver  ======================================================================
     Malayan flying lemur  ======================================================================
            GCF_003668045  ======================================================================

                    Mouse  accatg---tcatagcattccaaaatggaagaaaataa------------cctctgtggtggtttgagcc
                      Rat  accatgatatagtagtattccaaaatggaagaaaatgataatatcatggccctctgtggtggattgaacc
               Guinea pig  ======================================================================
                    Sheep  ======================================================================
                   Rhesus  ======================================================================
       Hawaiian monk seal  ======================================================================
                      Dog  ======================================================================
                    Horse  ======================================================================
                 Marmoset  ======================================================================
                  Gorilla  ======================================================================
                   Bonobo  ======================================================================
                    Chimp  ======================================================================
                    Human  ======================================================================
                   Tenrec  ======================================================================
                  Tarsier  ======================================================================
               Tree shrew  ======================================================================
                 Hedgehog  ======================================================================
                     Pika  ======================================================================
                Zebrafish  ======================================================================
            X. tropicalis  ======================================================================
                      Cow  ======================================================================
                  Chicken  ======================================================================
                    Shrew  ======================================================================
                 Elephant  ======================================================================
                 Squirrel  ======================================================================
                      Pig  ======================================================================
                   Rabbit  ======================================================================
         Chinese pangolin  ======================================================================
                 Bushbaby  ======================================================================
                   Beaver  ======================================================================
     Malayan flying lemur  ======================================================================
            GCF_003668045  ======================================================================

                    Mouse  cccataggctcatatatttgcatacttggttctcagttggtggactttttgagaagggtcaagaggtgtg
                      Rat  cccataggcttttatatttgtatatttgaatcacagttggtggacattttaggaagggtcaagaggtgtg
               Guinea pig  ======================================================================
                    Sheep  ======================================================================
                   Rhesus  ======================================================================
       Hawaiian monk seal  ======================================================================
                      Dog  ======================================================================
                    Horse  ======================================================================
                 Marmoset  ======================================================================
                  Gorilla  ======================================================================
                   Bonobo  ======================================================================
                    Chimp  ======================================================================
                    Human  ======================================================================
                   Tenrec  ======================================================================
                  Tarsier  ======================================================================
               Tree shrew  ======================================================================
                 Hedgehog  ======================================================================
                     Pika  ======================================================================
                Zebrafish  ======================================================================
            X. tropicalis  ======================================================================
                      Cow  ======================================================================
                  Chicken  ======================================================================
                    Shrew  ======================================================================
                 Elephant  ======================================================================
                 Squirrel  ======================================================================
                      Pig  ======================================================================
                   Rabbit  ======================================================================
         Chinese pangolin  ======================================================================
                 Bushbaby  ======================================================================
                   Beaver  ======================================================================
     Malayan flying lemur  ======================================================================
            GCF_003668045  ======================================================================

                    Mouse  actttgttggtgaaggtgtgtcactaggggtggcttagagatttcaaaaacccataccaggcatagtctg
                      Rat  accttgttggtaaaggtatgtcactgggggtgacttagagatt-caaaagcccatgccaggctctctctc
               Guinea pig  ======================================================================
                    Sheep  ======================================================================
                   Rhesus  ======================================================================
       Hawaiian monk seal  ======================================================================
                      Dog  ======================================================================
                    Horse  ======================================================================
                 Marmoset  ======================================================================
                  Gorilla  ======================================================================
                   Bonobo  ======================================================================
                    Chimp  ======================================================================
                    Human  ======================================================================
                   Tenrec  ======================================================================
                  Tarsier  ======================================================================
               Tree shrew  ======================================================================
                 Hedgehog  ======================================================================
                     Pika  ======================================================================
                Zebrafish  ======================================================================
            X. tropicalis  ======================================================================
                      Cow  ======================================================================
                  Chicken  ======================================================================
                    Shrew  ======================================================================
                 Elephant  ======================================================================
                 Squirrel  ======================================================================
                      Pig  ======================================================================
                   Rabbit  ======================================================================
         Chinese pangolin  ======================================================================
                 Bushbaby  ======================================================================
                   Beaver  ======================================================================
     Malayan flying lemur  ======================================================================
            GCF_003668045  ======================================================================

                    Mouse  tctctctctc-ctctctctctctctcatgtctgtggcttgaagatcagctacttcagcaccatgcctgac
                      Rat  tctctctctctctctctctctccctccctccc------------cccccctctttagcaccatgcctga-
               Guinea pig  ======================================================================
                    Sheep  ======================================================================
                   Rhesus  ======================================================================
       Hawaiian monk seal  ======================================================================
                      Dog  ======================================================================
                    Horse  ======================================================================
                 Marmoset  ======================================================================
                  Gorilla  ======================================================================
                   Bonobo  ======================================================================
                    Chimp  ======================================================================
                    Human  ======================================================================
                   Tenrec  ======================================================================
                  Tarsier  ======================================================================
               Tree shrew  ======================================================================
                 Hedgehog  ======================================================================
                     Pika  ======================================================================
                Zebrafish  ======================================================================
            X. tropicalis  ======================================================================
                      Cow  ======================================================================
                  Chicken  ======================================================================
                    Shrew  ======================================================================
                 Elephant  ======================================================================
                 Squirrel  ======================================================================
                      Pig  ======================================================================
                   Rabbit  ======================================================================
         Chinese pangolin  ======================================================================
                 Bushbaby  ======================================================================
                   Beaver  ======================================================================
     Malayan flying lemur  ======================================================================
            GCF_003668045  ======================================================================

                    Mouse  tgcctgccaccatgttccctgccatgataataatggactctctctctctctctgaaactataagctagcc
                      Rat  tgccttccaccatgcttcctgccatgatgataatggacttt---------tctgaaactgtaagctagca
               Guinea pig  ======================================================================
                    Sheep  ======================================================================
                   Rhesus  ======================================================================
       Hawaiian monk seal  ======================================================================
                      Dog  ======================================================================
                    Horse  ======================================================================
                 Marmoset  ======================================================================
                  Gorilla  ======================================================================
                   Bonobo  ======================================================================
                    Chimp  ======================================================================
                    Human  ======================================================================
                   Tenrec  ======================================================================
                  Tarsier  ======================================================================
               Tree shrew  ======================================================================
                 Hedgehog  ======================================================================
                     Pika  ======================================================================
                Zebrafish  ======================================================================
            X. tropicalis  ======================================================================
                      Cow  ======================================================================
                  Chicken  ======================================================================
                    Shrew  ======================================================================
                 Elephant  ======================================================================
                 Squirrel  ======================================================================
                      Pig  ======================================================================
                   Rabbit  ======================================================================
         Chinese pangolin  ======================================================================
                 Bushbaby  ======================================================================
                   Beaver  ======================================================================
     Malayan flying lemur  ======================================================================
            GCF_003668045  ======================================================================

                    Mouse  ctcaattagatgctttcctttgtagaagctgccttggtcatggtgcctcttcacagcaatagaacactga
                      Rat  -tcaattacatgctttcctttgtaaaagctgccttggccatg-tgtctcttcatagcaatagaacactga
               Guinea pig  ======================================================================
                    Sheep  ======================================================================
                   Rhesus  ======================================================================
       Hawaiian monk seal  ======================================================================
                      Dog  ======================================================================
                    Horse  ======================================================================
                 Marmoset  ======================================================================
                  Gorilla  ======================================================================
                   Bonobo  ======================================================================
                    Chimp  ======================================================================
                    Human  ======================================================================
                   Tenrec  ======================================================================
                  Tarsier  ======================================================================
               Tree shrew  ======================================================================
                 Hedgehog  ======================================================================
                     Pika  ======================================================================
                Zebrafish  ======================================================================
            X. tropicalis  ======================================================================
                      Cow  ======================================================================
                  Chicken  ======================================================================
                    Shrew  ======================================================================
                 Elephant  ======================================================================
                 Squirrel  ======================================================================
                      Pig  ======================================================================
                   Rabbit  ======================================================================
         Chinese pangolin  ======================================================================
                 Bushbaby  ======================================================================
                   Beaver  ======================================================================
     Malayan flying lemur  ======================================================================
            GCF_003668045  ======================================================================

                    Mouse  aacaccctccagcatgggtgggtcaccatggaagagagagcaccttccagcatgggtggagcaccatgga
                      Rat  gacaccctctaacatgggtgg--------------------------------------aacagcacgga
               Guinea pig  ======================================================================
                    Sheep  ======================================================================
                   Rhesus  ======================================================================
       Hawaiian monk seal  ======================================================================
                      Dog  ======================================================================
                    Horse  ======================================================================
                 Marmoset  ======================================================================
                  Gorilla  ======================================================================
                   Bonobo  ======================================================================
                    Chimp  ======================================================================
                    Human  ======================================================================
                   Tenrec  ======================================================================
                  Tarsier  ======================================================================
               Tree shrew  ======================================================================
                 Hedgehog  ======================================================================
                     Pika  ======================================================================
                Zebrafish  ======================================================================
            X. tropicalis  ======================================================================
                      Cow  ======================================================================
                  Chicken  ======================================================================
                    Shrew  ======================================================================
                 Elephant  ======================================================================
                 Squirrel  ======================================================================
                      Pig  ======================================================================
                   Rabbit  ======================================================================
         Chinese pangolin  ======================================================================
                 Bushbaby  ======================================================================
                   Beaver  ======================================================================
     Malayan flying lemur  ======================================================================
            GCF_003668045  ======================================================================

                    Mouse  agagagagcagggagaatagaagagtcaaaggaagggctagaacgctgtgaagatatttctgtttagttg
                      Rat  agagagagcagggagcatataagagtcacaggaaggactaggctgctgtgaagatatttctgtttagtgg
               Guinea pig  ======================================================================
                    Sheep  ======================================================================
                   Rhesus  ======================================================================
       Hawaiian monk seal  ======================================================================
                      Dog  ======================================================================
                    Horse  ======================================================================
                 Marmoset  ======================================================================
                  Gorilla  ======================================================================
                   Bonobo  ======================================================================
                    Chimp  ======================================================================
                    Human  ======================================================================
                   Tenrec  ======================================================================
                  Tarsier  ======================================================================
               Tree shrew  ======================================================================
                 Hedgehog  ======================================================================
                     Pika  ======================================================================
                Zebrafish  ======================================================================
            X. tropicalis  ======================================================================
                      Cow  ======================================================================
                  Chicken  ======================================================================
                    Shrew  ======================================================================
                 Elephant  ======================================================================
                 Squirrel  ======================================================================
                      Pig  ======================================================================
                   Rabbit  ======================================================================
         Chinese pangolin  ======================================================================
                 Bushbaby  ======================================================================
                   Beaver  ======================================================================
     Malayan flying lemur  ======================================================================
            GCF_003668045  ======================================================================

                    Mouse  tgagcctagcctttaatgtctgtgtcagatctctggaccttgggtctattacttacaggcgggacgtgac
                      Rat  cgagtctagcctttcatgtctgttccagttctctggttcttggatctatttcttacag-------gtgac
               Guinea pig  ======================================================================
                    Sheep  ======================================================================
                   Rhesus  ======================================================================
       Hawaiian monk seal  ======================================================================
                      Dog  ======================================================================
                    Horse  ======================================================================
                 Marmoset  ======================================================================
                  Gorilla  ======================================================================
                   Bonobo  ======================================================================
                    Chimp  ======================================================================
                    Human  ======================================================================
                   Tenrec  ======================================================================
                  Tarsier  ======================================================================
               Tree shrew  ======================================================================
                 Hedgehog  ======================================================================
                     Pika  ======================================================================
                Zebrafish  ======================================================================
            X. tropicalis  ======================================================================
                      Cow  ======================================================================
                  Chicken  ======================================================================
                    Shrew  ======================================================================
                 Elephant  ======================================================================
                 Squirrel  ======================================================================
                      Pig  ======================================================================
                   Rabbit  ======================================================================
         Chinese pangolin  ======================================================================
                 Bushbaby  ======================================================================
                   Beaver  ======================================================================
     Malayan flying lemur  ======================================================================
            GCF_003668045  ======================================================================

                    Mouse  catcaatatcttatatcagggaaactgtgatcatctgtgcgagacactcatgagataagggctattagca
                      Rat  cactgctatctcatatta----------------------gagacactcatgagataaggcctattagca
               Guinea pig  ======================================================================
                    Sheep  ======================================================================
                   Rhesus  ======================================================================
       Hawaiian monk seal  ======================================================================
                      Dog  ======================================================================
                    Horse  ======================================================================
                 Marmoset  ======================================================================
                  Gorilla  ======================================================================
                   Bonobo  ======================================================================
                    Chimp  ======================================================================
                    Human  ======================================================================
                   Tenrec  ======================================================================
                  Tarsier  ======================================================================
               Tree shrew  ======================================================================
                 Hedgehog  ======================================================================
                     Pika  ======================================================================
                Zebrafish  ======================================================================
            X. tropicalis  ======================================================================
                      Cow  ======================================================================
                  Chicken  ======================================================================
                    Shrew  ======================================================================
                 Elephant  ======================================================================
                 Squirrel  ======================================================================
                      Pig  ======================================================================
                   Rabbit  ======================================================================
         Chinese pangolin  ======================================================================
                 Bushbaby  ======================================================================
                   Beaver  ======================================================================
     Malayan flying lemur  ======================================================================
            GCF_003668045  ======================================================================

                    Mouse  ccgaggtggtaaagttcatggggctcagaggactcatgggactgatggtatttatga----------gat
                      Rat  atgaggtattaaagttcctggggctcagagaactcatgggactgatggtatctatgaaccctcatgggat
               Guinea pig  ======================================================================
                    Sheep  ======================================================================
                   Rhesus  ======================================================================
       Hawaiian monk seal  ======================================================================
                      Dog  ======================================================================
                    Horse  ======================================================================
                 Marmoset  ======================================================================
                  Gorilla  ======================================================================
                   Bonobo  ======================================================================
                    Chimp  ======================================================================
                    Human  ======================================================================
                   Tenrec  ======================================================================
                  Tarsier  ======================================================================
               Tree shrew  ======================================================================
                 Hedgehog  ======================================================================
                     Pika  ======================================================================
                Zebrafish  ======================================================================
            X. tropicalis  ======================================================================
                      Cow  ======================================================================
                  Chicken  ======================================================================
                    Shrew  ======================================================================
                 Elephant  ======================================================================
                 Squirrel  ======================================================================
                      Pig  ======================================================================
                   Rabbit  ======================================================================
         Chinese pangolin  ======================================================================
                 Bushbaby  ======================================================================
                   Beaver  ======================================================================
     Malayan flying lemur  ======================================================================
            GCF_003668045  ======================================================================

                    Mouse  c-----tttatgagtccttc-ctacttctcaatgtgatacaggagatgcaagattaattgg-tgggggag
                      Rat  cttttttttatgaagccttctccactgctcaatgttatataggtgatgtaggatttattggaaggggaag
               Guinea pig  ======================================================================
                    Sheep  ======================================================================
                   Rhesus  ======================================================================
       Hawaiian monk seal  ======================================================================
                      Dog  ======================================================================
                    Horse  ======================================================================
                 Marmoset  ======================================================================
                  Gorilla  ======================================================================
                   Bonobo  ======================================================================
                    Chimp  ======================================================================
                    Human  ======================================================================
                   Tenrec  ======================================================================
                  Tarsier  ======================================================================
               Tree shrew  ======================================================================
                 Hedgehog  ======================================================================
                     Pika  ======================================================================
                Zebrafish  ======================================================================
            X. tropicalis  ======================================================================
                      Cow  ======================================================================
                  Chicken  ======================================================================
                    Shrew  ======================================================================
                 Elephant  ======================================================================
                 Squirrel  ======================================================================
                      Pig  ======================================================================
                   Rabbit  ======================================================================
         Chinese pangolin  ======================================================================
                 Bushbaby  ======================================================================
                   Beaver  ======================================================================
     Malayan flying lemur  ======================================================================
            GCF_003668045  ======================================================================

                    Mouse  ctctgatacagtagctaccagtacatcat--------atggggggttctttgaagatgcaattgataacc
                      Rat  ctctgatacagtagctaccagtgcatcatctgtgggggtggagggctcattgaaggtgcaattgataacc
               Guinea pig  ======================================================================
                    Sheep  ======================================================================
                   Rhesus  ======================================================================
       Hawaiian monk seal  ======================================================================
                      Dog  ======================================================================
                    Horse  ======================================================================
                 Marmoset  ======================================================================
                  Gorilla  ======================================================================
                   Bonobo  ======================================================================
                    Chimp  ======================================================================
                    Human  ======================================================================
                   Tenrec  ======================================================================
                  Tarsier  ======================================================================
               Tree shrew  ======================================================================
                 Hedgehog  ======================================================================
                     Pika  ======================================================================
                Zebrafish  ======================================================================
            X. tropicalis  ======================================================================
                      Cow  ======================================================================
                  Chicken  ======================================================================
                    Shrew  ======================================================================
                 Elephant  ======================================================================
                 Squirrel  ======================================================================
                      Pig  ======================================================================
                   Rabbit  ======================================================================
         Chinese pangolin  ======================================================================
                 Bushbaby  ======================================================================
                   Beaver  ======================================================================
     Malayan flying lemur  ======================================================================
            GCF_003668045  ======================================================================

                    Mouse  ttaaaaataacctgggttgtttgggagggtcttgtgaggtccctt
                      Rat  ttaaaaatagcctcagttgtttggg-ggaccctatggggtccctt
               Guinea pig  =============================================
                    Sheep  =============================================
                   Rhesus  =============================================
       Hawaiian monk seal  =============================================
                      Dog  =============================================
                    Horse  =============================================
                 Marmoset  =============================================
                  Gorilla  =============================================
                   Bonobo  =============================================
                    Chimp  =============================================
                    Human  =============================================
                   Tenrec  =============================================
                  Tarsier  =============================================
               Tree shrew  =============================================
                 Hedgehog  =============================================
                     Pika  =============================================
                Zebrafish  =============================================
            X. tropicalis  =============================================
                      Cow  =============================================
                  Chicken  =============================================
                    Shrew  =============================================
                 Elephant  =============================================
                 Squirrel  =============================================
                      Pig  =============================================
                   Rabbit  =============================================
         Chinese pangolin  =============================================
                 Bushbaby  =============================================
                   Beaver  =============================================
     Malayan flying lemur  =============================================
            GCF_003668045  =============================================

Inserts between block 10 and 11 in window
B D                  Rat 107bp

Alignment block 11 of 162 in window, 56697036 - 56697880, 845 bps 
B D                 Mouse  tgggactctttagggatgtggttgcttatccattgctcaagggcttctccatgtcctctaagtcccacat
B D                   Rat  tgggactctccagggatgtggt---ttatacattgctctagggcttctctgagtcctcaaagtctcaca-
B D            Guinea pig  ======================================================================
B D                 Sheep  ======================================================================
B D                Rhesus  ======================================================================
B D    Hawaiian monk seal  ======================================================================
B D                   Dog  ======================================================================
B D                 Horse  ======================================================================
B D              Marmoset  ======================================================================
B D               Gorilla  ======================================================================
B D                Bonobo  ======================================================================
B D                 Chimp  ======================================================================
B D                 Human  ======================================================================
B D                Tenrec  ======================================================================
B D               Tarsier  ======================================================================
B D            Tree shrew  ======================================================================
B D              Hedgehog  ======================================================================
B D                  Pika  ======================================================================
B D             Zebrafish  ======================================================================
B D         X. tropicalis  ======================================================================
B D                   Cow  ======================================================================
B D               Chicken  ======================================================================
B D                 Shrew  ======================================================================
B D              Elephant  ======================================================================
B D              Squirrel  ======================================================================
B D                   Pig  ======================================================================
B D                Rabbit  ======================================================================
B D      Chinese pangolin  ======================================================================
B D              Bushbaby  ======================================================================
                  Beaver  ======================================================================
B D  Malayan flying lemur  ======================================================================
           GCF_003668045  ======================================================================

                    Mouse  gctcctctatgtaacccaataaaccaggctgaatttgagtaaagtctttttcttagtttcttgtttatgt
                      Rat  -cacctgtaagtaacccaataaaccaaactgtatttgagtgaactcttattcttagtttcttgcttgtgt
               Guinea pig  ======================================================================
                    Sheep  ======================================================================
                   Rhesus  ======================================================================
       Hawaiian monk seal  ======================================================================
                      Dog  ======================================================================
                    Horse  ======================================================================
                 Marmoset  ======================================================================
                  Gorilla  ======================================================================
                   Bonobo  ======================================================================
                    Chimp  ======================================================================
                    Human  ======================================================================
                   Tenrec  ======================================================================
                  Tarsier  ======================================================================
               Tree shrew  ======================================================================
                 Hedgehog  ======================================================================
                     Pika  ======================================================================
                Zebrafish  ======================================================================
            X. tropicalis  ======================================================================
                      Cow  ======================================================================
                  Chicken  ======================================================================
                    Shrew  ======================================================================
                 Elephant  ======================================================================
                 Squirrel  ======================================================================
                      Pig  ======================================================================
                   Rabbit  ======================================================================
         Chinese pangolin  ======================================================================
                 Bushbaby  ======================================================================
                   Beaver  ======================================================================
     Malayan flying lemur  ======================================================================
            GCF_003668045  ======================================================================

                    Mouse  ctccctaggaaaagtcatatgacatttaagaataactaggagagag--gttgattttctcagtataaacc
                      Rat  ctccccagg--aagtcacataacatttaagaataactaggagagagacattgactttctcaatataaagc
               Guinea pig  ======================================================================
                    Sheep  ======================================================================
                   Rhesus  ======================================================================
       Hawaiian monk seal  ======================================================================
                      Dog  ======================================================================
                    Horse  ======================================================================
                 Marmoset  ======================================================================
                  Gorilla  ======================================================================
                   Bonobo  ======================================================================
                    Chimp  ======================================================================
                    Human  ======================================================================
                   Tenrec  ======================================================================
                  Tarsier  ======================================================================
               Tree shrew  ======================================================================
                 Hedgehog  ======================================================================
                     Pika  ======================================================================
                Zebrafish  ======================================================================
            X. tropicalis  ======================================================================
                      Cow  ======================================================================
                  Chicken  ======================================================================
                    Shrew  ======================================================================
                 Elephant  ======================================================================
                 Squirrel  ======================================================================
                      Pig  ======================================================================
                   Rabbit  ======================================================================
         Chinese pangolin  ======================================================================
                 Bushbaby  ======================================================================
                   Beaver  ======================================================================
     Malayan flying lemur  ======================================================================
            GCF_003668045  ======================================================================

                    Mouse  agtgataaatgtttaaggagatgggagtactaattattctaagccccaacagattgtatatat-taccaa
                      Rat  agtggtaaatgtttaaggagatgggagtactggtgat--taagctccaacaggttgtatatatgtaccaa
               Guinea pig  ======================================================================
                    Sheep  ======================================================================
                   Rhesus  ======================================================================
       Hawaiian monk seal  ======================================================================
                      Dog  ======================================================================
                    Horse  ======================================================================
                 Marmoset  ======================================================================
                  Gorilla  ======================================================================
                   Bonobo  ======================================================================
                    Chimp  ======================================================================
                    Human  ======================================================================
                   Tenrec  ======================================================================
                  Tarsier  ======================================================================
               Tree shrew  ======================================================================
                 Hedgehog  ======================================================================
                     Pika  ======================================================================
                Zebrafish  ======================================================================
            X. tropicalis  ======================================================================
                      Cow  ======================================================================
                  Chicken  ======================================================================
                    Shrew  ======================================================================
                 Elephant  ======================================================================
                 Squirrel  ======================================================================
                      Pig  ======================================================================
                   Rabbit  ======================================================================
         Chinese pangolin  ======================================================================
                 Bushbaby  ======================================================================
                   Beaver  ======================================================================
     Malayan flying lemur  ======================================================================
            GCF_003668045  ======================================================================

                    Mouse  attaacatcttatacctctaaatatatacaattatgtcaatttttatattttttattcatttacat--gg
                      Rat  attaacatactgcaacatgaaatatgtacaattatgtcgatttttatatt-----ttcatttatgtgggg
               Guinea pig  ======================================================================
                    Sheep  ======================================================================
                   Rhesus  ======================================================================
       Hawaiian monk seal  ======================================================================
                      Dog  ======================================================================
                    Horse  ======================================================================
                 Marmoset  ======================================================================
                  Gorilla  ======================================================================
                   Bonobo  ======================================================================
                    Chimp  ======================================================================
                    Human  ======================================================================
                   Tenrec  ======================================================================
                  Tarsier  ======================================================================
               Tree shrew  ======================================================================
                 Hedgehog  ======================================================================
                     Pika  ======================================================================
                Zebrafish  ======================================================================
            X. tropicalis  ======================================================================
                      Cow  ======================================================================
                  Chicken  ======================================================================
                    Shrew  ======================================================================
                 Elephant  ======================================================================
                 Squirrel  ======================================================================
                      Pig  ======================================================================
                   Rabbit  ======================================================================
         Chinese pangolin  ======================================================================
                 Bushbaby  ======================================================================
                   Beaver  ======================================================================
     Malayan flying lemur  ======================================================================
            GCF_003668045  ======================================================================

                    Mouse  gggcatacatgcatgccacagcacacatgtgaaggttcaaggacaccgttcaggagtgggttctctcctt
                      Rat  gggcatgcatgcacaccatggcacacatgtgagggttcaagggcaactttt-ggagtagcttctctcctt
               Guinea pig  ======================================================================
                    Sheep  ======================================================================
                   Rhesus  ======================================================================
       Hawaiian monk seal  ======================================================================
                      Dog  ======================================================================
                    Horse  ======================================================================
                 Marmoset  ======================================================================
                  Gorilla  ======================================================================
                   Bonobo  ======================================================================
                    Chimp  ======================================================================
                    Human  ======================================================================
                   Tenrec  ======================================================================
                  Tarsier  ======================================================================
               Tree shrew  ======================================================================
                 Hedgehog  ======================================================================
                     Pika  ======================================================================
                Zebrafish  ======================================================================
            X. tropicalis  ======================================================================
                      Cow  ======================================================================
                  Chicken  ======================================================================
                    Shrew  ======================================================================
                 Elephant  ======================================================================
                 Squirrel  ======================================================================
                      Pig  ======================================================================
                   Rabbit  ======================================================================
         Chinese pangolin  ======================================================================
                 Bushbaby  ======================================================================
                   Beaver  ======================================================================
     Malayan flying lemur  ======================================================================
            GCF_003668045  ======================================================================

                    Mouse  ccaccaagtaagtcttggggatttgaactcatgtcaccaggcttagtgtcaagcagttttacctgaatca
                      Rat  ccaccatgtaagcctcagggatttgaactcgtgtcatcaggcttagtgtcaagtagttctacctgaacca
               Guinea pig  ======================================================================
                    Sheep  ======================================================================
                   Rhesus  ======================================================================
       Hawaiian monk seal  ======================================================================
                      Dog  ======================================================================
                    Horse  ======================================================================
                 Marmoset  ======================================================================
                  Gorilla  ======================================================================
                   Bonobo  ======================================================================
                    Chimp  ======================================================================
                    Human  ======================================================================
                   Tenrec  ======================================================================
                  Tarsier  ======================================================================
               Tree shrew  ======================================================================
                 Hedgehog  ======================================================================
                     Pika  ======================================================================
                Zebrafish  ======================================================================
            X. tropicalis  ======================================================================
                      Cow  ======================================================================
                  Chicken  ======================================================================
                    Shrew  ======================================================================
                 Elephant  ======================================================================
                 Squirrel  ======================================================================
                      Pig  ======================================================================
                   Rabbit  ======================================================================
         Chinese pangolin  ======================================================================
                 Bushbaby  ======================================================================
                   Beaver  ======================================================================
     Malayan flying lemur  ======================================================================
            GCF_003668045  ======================================================================

                    Mouse  tctcactagccttgtgctaaggttttgggatggaaaagagagagagatagctaaagttaagtgcctttga
                      Rat  tctcaccagcactgtgt--agg----gggatggaaa--agggagagatagctaaaattaagtgcctttga
               Guinea pig  ======================================================================
                    Sheep  ======================================================================
                   Rhesus  ======================================================================
       Hawaiian monk seal  ======================================================================
                      Dog  ======================================================================
                    Horse  ======================================================================
                 Marmoset  ======================================================================
                  Gorilla  ======================================================================
                   Bonobo  ======================================================================
                    Chimp  ======================================================================
                    Human  ======================================================================
                   Tenrec  ======================================================================
                  Tarsier  ======================================================================
               Tree shrew  ======================================================================
                 Hedgehog  ======================================================================
                     Pika  ======================================================================
                Zebrafish  ======================================================================
            X. tropicalis  ======================================================================
                      Cow  ======================================================================
                  Chicken  ======================================================================
                    Shrew  ======================================================================
                 Elephant  ======================================================================
                 Squirrel  ======================================================================
                      Pig  ======================================================================
                   Rabbit  ======================================================================
         Chinese pangolin  ======================================================================
                 Bushbaby  ======================================================================
                   Beaver  ======================================================================
     Malayan flying lemur  ======================================================================
            GCF_003668045  ======================================================================

                    Mouse  tgagtcatatcagaacctaatacagtagatgcttcctttttcatatataaatatatatatatatgtgtgt
                      Rat  cgggtcctgtcaaagtctaatacagtagacgattcct--------aaaaaatat----------------
               Guinea pig  ======================================================================
                    Sheep  ======================================================================
                   Rhesus  ======================================================================
       Hawaiian monk seal  ======================================================================
                      Dog  ======================================================================
                    Horse  ======================================================================
                 Marmoset  ======================================================================
                  Gorilla  ======================================================================
                   Bonobo  ======================================================================
                    Chimp  ======================================================================
                    Human  ======================================================================
                   Tenrec  ======================================================================
                  Tarsier  ======================================================================
               Tree shrew  ======================================================================
                 Hedgehog  ======================================================================
                     Pika  ======================================================================
                Zebrafish  ======================================================================
            X. tropicalis  ======================================================================
                      Cow  ======================================================================
                  Chicken  ======================================================================
                    Shrew  ======================================================================
                 Elephant  ======================================================================
                 Squirrel  ======================================================================
                      Pig  ======================================================================
                   Rabbit  ======================================================================
         Chinese pangolin  ======================================================================
                 Bushbaby  ======================================================================
                   Beaver  ======================================================================
     Malayan flying lemur  ======================================================================
            GCF_003668045  ======================================================================

                    Mouse  gtgtatatatatacatacatatatacatatatgtatttacttatatctttgatttttttctctctatgta
                      Rat  -------ttttcatatgcatatatataaaactgtatttacttatatctttga--tttttctctctatgtg
               Guinea pig  ======================================================================
                    Sheep  ======================================================================
                   Rhesus  ======================================================================
       Hawaiian monk seal  ======================================================================
                      Dog  ======================================================================
                    Horse  ======================================================================
                 Marmoset  ======================================================================
                  Gorilla  ======================================================================
                   Bonobo  ======================================================================
                    Chimp  ======================================================================
                    Human  ======================================================================
                   Tenrec  ======================================================================
                  Tarsier  ======================================================================
               Tree shrew  ======================================================================
                 Hedgehog  ======================================================================
                     Pika  ======================================================================
                Zebrafish  ======================================================================
            X. tropicalis  ======================================================================
                      Cow  ======================================================================
                  Chicken  ======================================================================
                    Shrew  ======================================================================
                 Elephant  ======================================================================
                 Squirrel  ======================================================================
                      Pig  ======================================================================
                   Rabbit  ======================================================================
         Chinese pangolin  ======================================================================
                 Bushbaby  ======================================================================
                   Beaver  ======================================================================
     Malayan flying lemur  ======================================================================
            GCF_003668045  ======================================================================

                    Mouse  tatatagaccttctgcttattttgttaaatttgtctctgagaatttgatgttaattcataaatgctatct
                      Rat  tatatagaacttcttttcattttgttacatttatctctgagaatttgatgttaattcataaatgctattt
               Guinea pig  ======================================================================
                    Sheep  ======================================================================
                   Rhesus  ======================================================================
       Hawaiian monk seal  ======================================================================
                      Dog  ======================================================================
                    Horse  ======================================================================
                 Marmoset  ======================================================================
                  Gorilla  ======================================================================
                   Bonobo  ======================================================================
                    Chimp  ======================================================================
                    Human  ======================================================================
                   Tenrec  ======================================================================
                  Tarsier  ======================================================================
               Tree shrew  ======================================================================
                 Hedgehog  ======================================================================
                     Pika  ======================================================================
                Zebrafish  ======================================================================
            X. tropicalis  ======================================================================
                      Cow  ======================================================================
                  Chicken  ======================================================================
                    Shrew  ======================================================================
                 Elephant  ======================================================================
                 Squirrel  ======================================================================
                      Pig  ======================================================================
                   Rabbit  ======================================================================
         Chinese pangolin  ======================================================================
                 Bushbaby  ======================================================================
                   Beaver  ======================================================================
     Malayan flying lemur  ======================================================================
            GCF_003668045  ======================================================================

                    Mouse  caacttcaactgcctattgctaattgattgcaaatttcatttttattactgcatttatatcctatcatct
                      Rat  ttacttcaattgcctattgtttattgattgcaaatttca-ttttattgctgactttatatccggtcacct
               Guinea pig  ======================================================================
                    Sheep  ======================================================================
                   Rhesus  ======================================================================
       Hawaiian monk seal  ======================================================================
                      Dog  ======================================================================
                    Horse  ======================================================================
                 Marmoset  ======================================================================
                  Gorilla  ======================================================================
                   Bonobo  ======================================================================
                    Chimp  ======================================================================
                    Human  ======================================================================
                   Tenrec  ======================================================================
                  Tarsier  ======================================================================
               Tree shrew  ======================================================================
                 Hedgehog  ======================================================================
                     Pika  ======================================================================
                Zebrafish  ======================================================================
            X. tropicalis  ======================================================================
                      Cow  ======================================================================
                  Chicken  ======================================================================
                    Shrew  ======================================================================
                 Elephant  ======================================================================
                 Squirrel  ======================================================================
                      Pig  ======================================================================
                   Rabbit  ======================================================================
         Chinese pangolin  ======================================================================
                 Bushbaby  ======================================================================
                   Beaver  ======================================================================
     Malayan flying lemur  ======================================================================
            GCF_003668045  ======================================================================

                    Mouse  tgatttttat
                      Rat  tgatttttat
               Guinea pig  ==========
                    Sheep  ==========
                   Rhesus  ==========
       Hawaiian monk seal  ==========
                      Dog  ==========
                    Horse  ==========
                 Marmoset  ==========
                  Gorilla  ==========
                   Bonobo  ==========
                    Chimp  ==========
                    Human  ==========
                   Tenrec  ==========
                  Tarsier  ==========
               Tree shrew  ==========
                 Hedgehog  ==========
                     Pika  ==========
                Zebrafish  ==========
            X. tropicalis  ==========
                      Cow  ==========
                  Chicken  ==========
                    Shrew  ==========
                 Elephant  ==========
                 Squirrel  ==========
                      Pig  ==========
                   Rabbit  ==========
         Chinese pangolin  ==========
                 Bushbaby  ==========
                   Beaver  ==========
     Malayan flying lemur  ==========
            GCF_003668045  ==========

Alignment block 12 of 162 in window, 56697881 - 56697882, 2 bps 
B D                 Mouse  tg
B D                   Rat  ta
B D      Chinese pangolin  ta
B D            Guinea pig  ==
B D                 Sheep  ==
B D                Rhesus  ==
B D    Hawaiian monk seal  ==
B D                   Dog  ==
B D                 Horse  ==
B D              Marmoset  ==
B D               Gorilla  ==
B D                Bonobo  ==
B D                 Chimp  ==
B D                 Human  ==
B D                Tenrec  ==
B D               Tarsier  ==
B D            Tree shrew  ==
B D              Hedgehog  ==
B D                  Pika  ==
B D             Zebrafish  ==
B D         X. tropicalis  ==
B D                   Cow  ==
B D               Chicken  ==
B D                 Shrew  ==
B D              Elephant  ==
B D              Squirrel  ==
B D                   Pig  ==
B D                Rabbit  ==
B D              Bushbaby  ==
                  Beaver  ==
B D  Malayan flying lemur  ==
           GCF_003668045  ==

Alignment block 13 of 162 in window, 56697883 - 56697885, 3 bps 
B D                 Mouse  aaa
B D                   Rat  aaa
B D               Dolphin  aaa
B D      Chinese pangolin  aaa
B D            Guinea pig  ===
B D                 Sheep  ===
B D                Rhesus  ===
B D    Hawaiian monk seal  ===
B D                   Dog  ===
B D                 Horse  ===
B D              Marmoset  ===
B D               Gorilla  ===
B D                Bonobo  ===
B D                 Chimp  ===
B D                 Human  ===
B D                Tenrec  ===
B D               Tarsier  ===
B D            Tree shrew  ===
B D              Hedgehog  ===
B D                  Pika  ===
B D             Zebrafish  ===
B D         X. tropicalis  ===
B D                   Cow  ===
B D               Chicken  ===
B D                 Shrew  ===
B D              Elephant  ===
B D              Squirrel  ===
B D                   Pig  ===
B D                Rabbit  ===
B D              Bushbaby  ===
                  Beaver  ===
B D  Malayan flying lemur  ===
           GCF_003668045  ===

Inserts between block 13 and 14 in window
B D              Dolphin 2bp
B D     Chinese pangolin 2bp

Alignment block 14 of 162 in window, 56697886 - 56698030, 145 bps 
B D                 Mouse  ataattttctgctttagt-t-ctttcttttacccatattccct-----gctta-ttcactgagaatatca
B D                   Rat  ataattttttgctttagt-t-ctttattttaaccatattttct-----gtttatttcattgagaatatta
B D               Dolphin  actatgttct-tttcgtcttactttatattaaccatattttct---atgtttattaaaatgggaatatta
B D      Chinese pangolin  ac-atgttca-ctttggc-tattttatattaaccatattttctgtcatgtttactaaattaggaacatta
B D                 Shrew  acaatgttca-ctttagt---ctttatattaatcataatttctatcatg------aaattggaaatagta
B D            Guinea pig  ======================================================================
B D                 Sheep  ======================================================================
B D                Rhesus  ======================================================================
B D    Hawaiian monk seal  ======================================================================
B D                   Dog  ======================================================================
B D                 Horse  ======================================================================
B D              Marmoset  ======================================================================
B D               Gorilla  ======================================================================
B D                Bonobo  ======================================================================
B D                 Chimp  ======================================================================
B D                 Human  ======================================================================
B D                Tenrec  ======================================================================
B D               Tarsier  ======================================================================
B D            Tree shrew  ======================================================================
B D              Hedgehog  ======================================================================
B D                  Pika  ======================================================================
B D             Zebrafish  ======================================================================
B D         X. tropicalis  ======================================================================
B D                   Cow  ======================================================================
B D               Chicken  ======================================================================
B D              Elephant  ======================================================================
B D              Squirrel  ======================================================================
B D                   Pig  ======================================================================
B D                Rabbit  ======================================================================
B D              Bushbaby  ======================================================================
                  Beaver  ======================================================================
B D  Malayan flying lemur  ======================================================================
           GCF_003668045  ======================================================================

                    Mouse  ggattaattatatatatatacac--------acacacac-acacacatttccttg-ctttttttccagat
                      Rat  ggattaactatatgta-----at--------agatatac-atacacatttctctgtctttttattcagat
                  Dolphin  -----aaatacattttcaagtatttcattccaaattcaaggcactttctctcttc-ctttcttcccagga
         Chinese pangolin  -----aaacacattttcagatat--------atgttcaagataccttctcacttg-ctt--ttcccaggt
                    Shrew  -----aaatatgttttcacacat--------atgcccag--------cagttttg-ctt--ttcctgggt
               Guinea pig  ======================================================================
                    Sheep  ======================================================================
                   Rhesus  ======================================================================
       Hawaiian monk seal  ======================================================================
                      Dog  ======================================================================
                    Horse  ======================================================================
                 Marmoset  ======================================================================
                  Gorilla  ======================================================================
                   Bonobo  ======================================================================
                    Chimp  ======================================================================
                    Human  ======================================================================
                   Tenrec  ======================================================================
                  Tarsier  ======================================================================
               Tree shrew  ======================================================================
                 Hedgehog  ======================================================================
                     Pika  ======================================================================
                Zebrafish  ======================================================================
            X. tropicalis  ======================================================================
                      Cow  ======================================================================
                  Chicken  ======================================================================
                 Elephant  ======================================================================
                 Squirrel  ======================================================================
                      Pig  ======================================================================
                   Rabbit  ======================================================================
                 Bushbaby  ======================================================================
                   Beaver  ======================================================================
     Malayan flying lemur  ======================================================================
            GCF_003668045  ======================================================================

                    Mouse  aagggaa-atcacacttctttgaa
                      Rat  aagggag-gtaacactgttttgaa
                  Dolphin  aagaaaagattacaactttttgaa
         Chinese pangolin  aagaaaagatcacacctttttcaa
                    Shrew  aaggaaatatctcactgttttcta
               Guinea pig  ========================
                    Sheep  ========================
                   Rhesus  ========================
       Hawaiian monk seal  ========================
                      Dog  ========================
                    Horse  ========================
                 Marmoset  ========================
                  Gorilla  ========================
                   Bonobo  ========================
                    Chimp  ========================
                    Human  ========================
                   Tenrec  ========================
                  Tarsier  ========================
               Tree shrew  ========================
                 Hedgehog  ========================
                     Pika  ========================
                Zebrafish  ========================
            X. tropicalis  ========================
                      Cow  ========================
                  Chicken  ========================
                 Elephant  ========================
                 Squirrel  ========================
                      Pig  ========================
                   Rabbit  ========================
                 Bushbaby  ========================
                   Beaver  ========================
     Malayan flying lemur  ========================
            GCF_003668045  ========================

Inserts between block 14 and 15 in window
B D              Dolphin 35bp
B D                Shrew 5bp

Alignment block 15 of 162 in window, 56698031 - 56698031, 1 bps 
B D                 Mouse  g
B D                   Rat  g
B D      Chinese pangolin  a
B D                 Shrew  g
B D            Guinea pig  =
B D                 Sheep  =
B D                Rhesus  =
B D    Hawaiian monk seal  =
B D                   Dog  =
B D                 Horse  =
B D              Marmoset  =
B D               Gorilla  =
B D                Bonobo  =
B D                 Chimp  =
B D                 Human  =
B D                Tenrec  =
B D               Tarsier  =
B D            Tree shrew  =
B D              Hedgehog  =
B D                  Pika  =
B D             Zebrafish  =
B D         X. tropicalis  =
B D                   Cow  =
B D               Chicken  =
B D              Elephant  =
B D              Squirrel  =
B D                   Pig  =
B D                Rabbit  =
B D               Dolphin  =
B D              Bushbaby  =
                  Beaver  =
B D  Malayan flying lemur  =
           GCF_003668045  =

Inserts between block 15 and 16 in window
B D     Chinese pangolin 34bp

Alignment block 16 of 162 in window, 56698032 - 56698042, 11 bps 
B D                 Mouse  -------atgtcatggcc
B D                   Rat  --------tgtgactgcc
B D                 Shrew  attctttaagtgatatt-
B D            Guinea pig  ==================
B D                 Sheep  ==================
B D                Rhesus  ==================
B D    Hawaiian monk seal  ==================
B D                   Dog  ==================
B D                 Horse  ==================
B D              Marmoset  ==================
B D               Gorilla  ==================
B D                Bonobo  ==================
B D                 Chimp  ==================
B D                 Human  ==================
B D                Tenrec  ==================
B D               Tarsier  ==================
B D            Tree shrew  ==================
B D              Hedgehog  ==================
B D                  Pika  ==================
B D             Zebrafish  ==================
B D         X. tropicalis  ==================
B D                   Cow  ==================
B D               Chicken  ==================
B D              Elephant  ==================
B D              Squirrel  ==================
B D                   Pig  ==================
B D                Rabbit  ==================
B D      Chinese pangolin  ==================
B D               Dolphin  ==================
B D              Bushbaby  ==================
                  Beaver  ==================
B D  Malayan flying lemur  ==================
           GCF_003668045  ==================

Alignment block 17 of 162 in window, 56698043 - 56698043, 1 bps 
B D                 Mouse  c
B D      Chinese pangolin  t
B D                 Shrew  c
B D            Guinea pig  =
B D                 Sheep  =
B D                Rhesus  =
B D    Hawaiian monk seal  =
B D                   Dog  =
B D                 Horse  =
B D              Marmoset  =
B D               Gorilla  =
B D                Bonobo  =
B D                 Chimp  =
B D                 Human  =
B D                Tenrec  =
B D               Tarsier  =
B D            Tree shrew  =
B D              Hedgehog  =
B D                  Pika  =
B D             Zebrafish  =
B D         X. tropicalis  =
B D                   Cow  =
B D               Chicken  =
B D              Elephant  =
B D              Squirrel  =
B D                   Pig  =
B D                Rabbit  =
B D               Dolphin  =
B D              Bushbaby  =
                  Beaver  =
B D  Malayan flying lemur  =
           GCF_003668045  =
B D                   Rat  -

Inserts between block 17 and 18 in window
B D     Chinese pangolin 30bp

Alignment block 18 of 162 in window, 56698044 - 56698048, 5 bps 
B D                 Mouse  ctgat
B D                 Shrew  ttaat
B D            Guinea pig  =====
B D                 Sheep  =====
B D                Rhesus  =====
B D    Hawaiian monk seal  =====
B D                   Dog  =====
B D                 Horse  =====
B D              Marmoset  =====
B D               Gorilla  =====
B D                Bonobo  =====
B D                 Chimp  =====
B D                 Human  =====
B D                Tenrec  =====
B D               Tarsier  =====
B D            Tree shrew  =====
B D              Hedgehog  =====
B D                  Pika  =====
B D             Zebrafish  =====
B D         X. tropicalis  =====
B D                   Cow  =====
B D               Chicken  =====
B D              Elephant  =====
B D              Squirrel  =====
B D                   Pig  =====
B D                Rabbit  =====
B D      Chinese pangolin  =====
B D               Dolphin  =====
B D              Bushbaby  =====
                  Beaver  =====
B D  Malayan flying lemur  =====
           GCF_003668045  =====
B D                   Rat  -----

Alignment block 19 of 162 in window, 56698049 - 56698049, 1 bps 
B D                 Mouse  t
B D               Dolphin  t
B D                 Shrew  t
B D            Guinea pig  =
B D                 Sheep  =
B D                Rhesus  =
B D    Hawaiian monk seal  =
B D                   Dog  =
B D                 Horse  =
B D              Marmoset  =
B D               Gorilla  =
B D                Bonobo  =
B D                 Chimp  =
B D                 Human  =
B D                Tenrec  =
B D               Tarsier  =
B D            Tree shrew  =
B D              Hedgehog  =
B D                  Pika  =
B D             Zebrafish  =
B D         X. tropicalis  =
B D                   Cow  =
B D               Chicken  =
B D              Elephant  =
B D              Squirrel  =
B D                   Pig  =
B D                Rabbit  =
B D      Chinese pangolin  =
B D              Bushbaby  =
                  Beaver  =
B D  Malayan flying lemur  =
           GCF_003668045  =
B D                   Rat  -

Inserts between block 19 and 20 in window
B D              Dolphin 30bp

Alignment block 20 of 162 in window, 56698050 - 56698051, 2 bps 
B D                 Mouse  -ac
B D                 Shrew  gg-
B D            Guinea pig  ===
B D                 Sheep  ===
B D                Rhesus  ===
B D    Hawaiian monk seal  ===
B D                   Dog  ===
B D                 Horse  ===
B D              Marmoset  ===
B D               Gorilla  ===
B D                Bonobo  ===
B D                 Chimp  ===
B D                 Human  ===
B D                Tenrec  ===
B D               Tarsier  ===
B D            Tree shrew  ===
B D              Hedgehog  ===
B D                  Pika  ===
B D             Zebrafish  ===
B D         X. tropicalis  ===
B D                   Cow  ===
B D               Chicken  ===
B D              Elephant  ===
B D              Squirrel  ===
B D                   Pig  ===
B D                Rabbit  ===
B D      Chinese pangolin  ===
B D               Dolphin  ===
B D              Bushbaby  ===
                  Beaver  ===
B D  Malayan flying lemur  ===
           GCF_003668045  ===
B D                   Rat  ---

Inserts between block 20 and 21 in window
B D                Shrew 52bp

Alignment block 21 of 162 in window, 56698052 - 56698073, 22 bps 
B D                 Mouse  cccttacctttcttgtttccta
B D                   Rat  ---------ttcttgtttccta
B D            Guinea pig  ======================
B D                 Sheep  ======================
B D                Rhesus  ======================
B D    Hawaiian monk seal  ======================
B D                   Dog  ======================
B D                 Horse  ======================
B D              Marmoset  ======================
B D               Gorilla  ======================
B D                Bonobo  ======================
B D                 Chimp  ======================
B D                 Human  ======================
B D                Tenrec  ======================
B D               Tarsier  ======================
B D            Tree shrew  ======================
B D              Hedgehog  ======================
B D                  Pika  ======================
B D             Zebrafish  ======================
B D         X. tropicalis  ======================
B D                   Cow  ======================
B D               Chicken  ======================
B D                 Shrew  ======================
B D              Elephant  ======================
B D              Squirrel  ======================
B D                   Pig  ======================
B D                Rabbit  ======================
B D      Chinese pangolin  ======================
B D               Dolphin  ======================
B D              Bushbaby  ======================
                  Beaver  ======================
B D  Malayan flying lemur  ======================
           GCF_003668045  ======================

Alignment block 22 of 162 in window, 56698074 - 56698074, 1 bps 
B D                 Mouse  c
B D                   Rat  c
B D               Dolphin  c
B D      Chinese pangolin  t
B D            Guinea pig  =
B D                 Sheep  =
B D                Rhesus  =
B D    Hawaiian monk seal  =
B D                   Dog  =
B D                 Horse  =
B D              Marmoset  =
B D               Gorilla  =
B D                Bonobo  =
B D                 Chimp  =
B D                 Human  =
B D                Tenrec  =
B D               Tarsier  =
B D            Tree shrew  =
B D              Hedgehog  =
B D                  Pika  =
B D             Zebrafish  =
B D         X. tropicalis  =
B D                   Cow  =
B D               Chicken  =
B D                 Shrew  =
B D              Elephant  =
B D              Squirrel  =
B D                   Pig  =
B D                Rabbit  =
B D              Bushbaby  =
                  Beaver  =
B D  Malayan flying lemur  =
           GCF_003668045  =

Inserts between block 22 and 23 in window
B D              Dolphin 140bp

Alignment block 23 of 162 in window, 56698075 - 56698102, 28 bps 
B D                 Mouse  aaagaatgctctgtcctactgagtaagc
B D                   Rat  aaagaattctcttccctactaagtaagc
B D            Guinea pig  ============================
B D                 Sheep  ============================
B D                Rhesus  ============================
B D    Hawaiian monk seal  ============================
B D                   Dog  ============================
B D                 Horse  ============================
B D              Marmoset  ============================
B D               Gorilla  ============================
B D                Bonobo  ============================
B D                 Chimp  ============================
B D                 Human  ============================
B D                Tenrec  ============================
B D               Tarsier  ============================
B D            Tree shrew  ============================
B D              Hedgehog  ============================
B D                  Pika  ============================
B D             Zebrafish  ============================
B D         X. tropicalis  ============================
B D                   Cow  ============================
B D               Chicken  ============================
B D                 Shrew  ============================
B D              Elephant  ============================
B D              Squirrel  ============================
B D                   Pig  ============================
B D                Rabbit  ============================
B D      Chinese pangolin  ============================
B D               Dolphin  ============================
B D              Bushbaby  ============================
                  Beaver  ============================
B D  Malayan flying lemur  ============================
           GCF_003668045  ============================

Alignment block 24 of 162 in window, 56698103 - 56698106, 4 bps 
B D                 Mouse  -aaaa
B D                   Rat  -aaag
B D                 Shrew  ggaa-
B D            Guinea pig  =====
B D                 Sheep  =====
B D                Rhesus  =====
B D    Hawaiian monk seal  =====
B D                   Dog  =====
B D                 Horse  =====
B D              Marmoset  =====
B D               Gorilla  =====
B D                Bonobo  =====
B D                 Chimp  =====
B D                 Human  =====
B D                Tenrec  =====
B D               Tarsier  =====
B D            Tree shrew  =====
B D              Hedgehog  =====
B D                  Pika  =====
B D             Zebrafish  =====
B D         X. tropicalis  =====
B D                   Cow  =====
B D               Chicken  =====
B D              Elephant  =====
B D              Squirrel  =====
B D                   Pig  =====
B D                Rabbit  =====
B D      Chinese pangolin  =====
B D               Dolphin  =====
B D              Bushbaby  =====
                  Beaver  =====
B D  Malayan flying lemur  =====
           GCF_003668045  =====

Inserts between block 24 and 25 in window
B D                Shrew 96bp

Alignment block 25 of 162 in window, 56698107 - 56698168, 62 bps 
B D                 Mouse  tttttaaatggattatcccaacagccataattcagacagaagacagaagcctcccaggggaa
B D                   Rat  ttttgaaatggattatcctaacagcaataattcaaagagaagatggaagcctccaaagag-a
B D            Guinea pig  ==============================================================
B D                 Sheep  ==============================================================
B D                Rhesus  ==============================================================
B D    Hawaiian monk seal  ==============================================================
B D                   Dog  ==============================================================
B D                 Horse  ==============================================================
B D              Marmoset  ==============================================================
B D               Gorilla  ==============================================================
B D                Bonobo  ==============================================================
B D                 Chimp  ==============================================================
B D                 Human  ==============================================================
B D                Tenrec  ==============================================================
B D               Tarsier  ==============================================================
B D            Tree shrew  ==============================================================
B D              Hedgehog  ==============================================================
B D                  Pika  ==============================================================
B D             Zebrafish  ==============================================================
B D         X. tropicalis  ==============================================================
B D                   Cow  ==============================================================
B D               Chicken  ==============================================================
B D                 Shrew  ==============================================================
B D              Elephant  ==============================================================
B D              Squirrel  ==============================================================
B D                   Pig  ==============================================================
B D                Rabbit  ==============================================================
B D      Chinese pangolin  ==============================================================
B D               Dolphin  ==============================================================
B D              Bushbaby  ==============================================================
                  Beaver  ==============================================================
B D  Malayan flying lemur  ==============================================================
           GCF_003668045  ==============================================================

Alignment block 26 of 162 in window, 56698169 - 56698204, 36 bps 
B D                 Mouse  aaattctagatttctctgccttccccaaaatatttt
B D                   Rat  aaattctagattccttttcctt-cccaaaatatttt
B D               Tarsier  --aatctatatttatttgtcttttctcatattcatt
B D            Guinea pig  ====================================
B D                 Sheep  ====================================
B D                Rhesus  ====================================
B D    Hawaiian monk seal  ====================================
B D                   Dog  ====================================
B D                 Horse  ====================================
B D              Marmoset  ====================================
B D               Gorilla  ====================================
B D                Bonobo  ====================================
B D                 Chimp  ====================================
B D                 Human  ====================================
B D                Tenrec  ====================================
B D            Tree shrew  ====================================
B D              Hedgehog  ====================================
B D                  Pika  ====================================
B D             Zebrafish  ====================================
B D         X. tropicalis  ====================================
B D                   Cow  ====================================
B D               Chicken  ====================================
B D                 Shrew  ====================================
B D              Elephant  ====================================
B D              Squirrel  ====================================
B D                   Pig  ====================================
B D                Rabbit  ====================================
B D      Chinese pangolin  ====================================
B D               Dolphin  ====================================
B D              Bushbaby  ====================================
                  Beaver  ====================================
B D  Malayan flying lemur  ====================================
           GCF_003668045  ====================================

Alignment block 27 of 162 in window, 56698205 - 56698208, 4 bps 
B D                 Mouse  ttcc
B D                   Rat  tt-c
B D               Tarsier  ctcc
B D                 Shrew  ttcc
B D            Guinea pig  ====
B D                 Sheep  ====
B D                Rhesus  ====
B D    Hawaiian monk seal  ====
B D                   Dog  ====
B D                 Horse  ====
B D              Marmoset  ====
B D               Gorilla  ====
B D                Bonobo  ====
B D                 Chimp  ====
B D                 Human  ====
B D                Tenrec  ====
B D            Tree shrew  ====
B D              Hedgehog  ====
B D                  Pika  ====
B D             Zebrafish  ====
B D         X. tropicalis  ====
B D                   Cow  ====
B D               Chicken  ====
B D              Elephant  ====
B D              Squirrel  ====
B D                   Pig  ====
B D                Rabbit  ====
B D      Chinese pangolin  ====
B D               Dolphin  ====
B D              Bushbaby  ====
                  Beaver  ====
B D  Malayan flying lemur  ====
           GCF_003668045  ====

Alignment block 28 of 162 in window, 56698209 - 56698209, 1 bps 
B D                 Mouse  -a
B D                   Rat  -a
B D                 Shrew  t-
B D            Guinea pig  ==
B D                 Sheep  ==
B D                Rhesus  ==
B D    Hawaiian monk seal  ==
B D                   Dog  ==
B D                 Horse  ==
B D              Marmoset  ==
B D               Gorilla  ==
B D                Bonobo  ==
B D                 Chimp  ==
B D                 Human  ==
B D                Tenrec  ==
B D               Tarsier  ==
B D            Tree shrew  ==
B D              Hedgehog  ==
B D                  Pika  ==
B D             Zebrafish  ==
B D         X. tropicalis  ==
B D                   Cow  ==
B D               Chicken  ==
B D              Elephant  ==
B D              Squirrel  ==
B D                   Pig  ==
B D                Rabbit  ==
B D      Chinese pangolin  ==
B D               Dolphin  ==
B D              Bushbaby  ==
                  Beaver  ==
B D  Malayan flying lemur  ==
           GCF_003668045  ==

Alignment block 29 of 162 in window, 56698210 - 56698220, 11 bps 
B D                 Mouse  gacaatatatt
B D                   Rat  gacaatatatt
B D            Guinea pig  ===========
B D                 Sheep  ===========
B D                Rhesus  ===========
B D    Hawaiian monk seal  ===========
B D                   Dog  ===========
B D                 Horse  ===========
B D              Marmoset  ===========
B D               Gorilla  ===========
B D                Bonobo  ===========
B D                 Chimp  ===========
B D                 Human  ===========
B D                Tenrec  ===========
B D               Tarsier  ===========
B D            Tree shrew  ===========
B D              Hedgehog  ===========
B D                  Pika  ===========
B D             Zebrafish  ===========
B D         X. tropicalis  ===========
B D                   Cow  ===========
B D               Chicken  ===========
B D                 Shrew  ===========
B D              Elephant  ===========
B D              Squirrel  ===========
B D                   Pig  ===========
B D                Rabbit  ===========
B D      Chinese pangolin  ===========
B D               Dolphin  ===========
B D              Bushbaby  ===========
                  Beaver  ===========
B D  Malayan flying lemur  ===========
           GCF_003668045  ===========

Alignment block 30 of 162 in window, 56698221 - 56698231, 11 bps 
B D                 Mouse  ctgacccctgg-
B D                   Rat  ctgaccctagg-
B D               Dolphin  -caatcccttgt
B D            Guinea pig  ============
B D                 Sheep  ============
B D                Rhesus  ============
B D    Hawaiian monk seal  ============
B D                   Dog  ============
B D                 Horse  ============
B D              Marmoset  ============
B D               Gorilla  ============
B D                Bonobo  ============
B D                 Chimp  ============
B D                 Human  ============
B D                Tenrec  ============
B D               Tarsier  ============
B D            Tree shrew  ============
B D              Hedgehog  ============
B D                  Pika  ============
B D             Zebrafish  ============
B D         X. tropicalis  ============
B D                   Cow  ============
B D               Chicken  ============
B D                 Shrew  ============
B D              Elephant  ============
B D              Squirrel  ============
B D                   Pig  ============
B D                Rabbit  ============
B D      Chinese pangolin  ============
B D              Bushbaby  ============
                  Beaver  ============
B D  Malayan flying lemur  ============
           GCF_003668045  ============

Inserts between block 30 and 31 in window
B D              Dolphin 11bp

Alignment block 31 of 162 in window, 56698232 - 56698234, 3 bps 
B D                 Mouse  ttc
B D                   Rat  ttc
B D            Guinea pig  ===
B D                 Sheep  ===
B D                Rhesus  ===
B D    Hawaiian monk seal  ===
B D                   Dog  ===
B D                 Horse  ===
B D              Marmoset  ===
B D               Gorilla  ===
B D                Bonobo  ===
B D                 Chimp  ===
B D                 Human  ===
B D                Tenrec  ===
B D               Tarsier  ===
B D            Tree shrew  ===
B D              Hedgehog  ===
B D                  Pika  ===
B D             Zebrafish  ===
B D         X. tropicalis  ===
B D                   Cow  ===
B D               Chicken  ===
B D                 Shrew  ===
B D              Elephant  ===
B D              Squirrel  ===
B D                   Pig  ===
B D                Rabbit  ===
B D      Chinese pangolin  ===
B D               Dolphin  ===
B D              Bushbaby  ===
                  Beaver  ===
B D  Malayan flying lemur  ===
           GCF_003668045  ===

Alignment block 32 of 162 in window, 56698235 - 56698237, 3 bps 
B D                 Mouse  tcc
B D                   Rat  ccc
B D               Dolphin  ttc
B D            Guinea pig  ===
B D                 Sheep  ===
B D                Rhesus  ===
B D    Hawaiian monk seal  ===
B D                   Dog  ===
B D                 Horse  ===
B D              Marmoset  ===
B D               Gorilla  ===
B D                Bonobo  ===
B D                 Chimp  ===
B D                 Human  ===
B D                Tenrec  ===
B D               Tarsier  ===
B D            Tree shrew  ===
B D              Hedgehog  ===
B D                  Pika  ===
B D             Zebrafish  ===
B D         X. tropicalis  ===
B D                   Cow  ===
B D               Chicken  ===
B D                 Shrew  ===
B D              Elephant  ===
B D              Squirrel  ===
B D                   Pig  ===
B D                Rabbit  ===
B D      Chinese pangolin  ===
B D              Bushbaby  ===
                  Beaver  ===
B D  Malayan flying lemur  ===
           GCF_003668045  ===

Inserts between block 32 and 33 in window
B D              Dolphin 39bp

Alignment block 33 of 162 in window, 56698238 - 56698273, 36 bps 
B D                 Mouse  ttccccatctctcactcagcttcccctcccccttct
B D                   Rat  tccaccatctccctcccaggttcccctccaccatct
B D            Guinea pig  ====================================
B D                 Sheep  ====================================
B D                Rhesus  ====================================
B D    Hawaiian monk seal  ====================================
B D                   Dog  ====================================
B D                 Horse  ====================================
B D              Marmoset  ====================================
B D               Gorilla  ====================================
B D                Bonobo  ====================================
B D                 Chimp  ====================================
B D                 Human  ====================================
B D                Tenrec  ====================================
B D               Tarsier  ====================================
B D            Tree shrew  ====================================
B D              Hedgehog  ====================================
B D                  Pika  ====================================
B D             Zebrafish  ====================================
B D         X. tropicalis  ====================================
B D                   Cow  ====================================
B D               Chicken  ====================================
B D                 Shrew  ====================================
B D              Elephant  ====================================
B D              Squirrel  ====================================
B D                   Pig  ====================================
B D                Rabbit  ====================================
B D      Chinese pangolin  ====================================
B D               Dolphin  ====================================
B D              Bushbaby  ====================================
                  Beaver  ====================================
B D  Malayan flying lemur  ====================================
           GCF_003668045  ====================================

Alignment block 34 of 162 in window, 56698274 - 56698274, 1 bps 
B D                 Mouse  c
B D                   Rat  c
B D               Dolphin  c
B D            Guinea pig  =
B D                 Sheep  =
B D                Rhesus  =
B D    Hawaiian monk seal  =
B D                   Dog  =
B D                 Horse  =
B D              Marmoset  =
B D               Gorilla  =
B D                Bonobo  =
B D                 Chimp  =
B D                 Human  =
B D                Tenrec  =
B D               Tarsier  =
B D            Tree shrew  =
B D              Hedgehog  =
B D                  Pika  =
B D             Zebrafish  =
B D         X. tropicalis  =
B D                   Cow  =
B D               Chicken  =
B D                 Shrew  =
B D              Elephant  =
B D              Squirrel  =
B D                   Pig  =
B D                Rabbit  =
B D      Chinese pangolin  =
B D              Bushbaby  =
                  Beaver  =
B D  Malayan flying lemur  =
           GCF_003668045  =

Inserts between block 34 and 35 in window
B D              Dolphin 32bp

Alignment block 35 of 162 in window, 56698275 - 56698308, 34 bps 
B D                 Mouse  ccaggttcttcccactccacaaccacccaatccc
B D                   Rat  ccaggttcttcccactccccaactacccaacttc
B D            Guinea pig  ==================================
B D                 Sheep  ==================================
B D                Rhesus  ==================================
B D    Hawaiian monk seal  ==================================
B D                   Dog  ==================================
B D                 Horse  ==================================
B D              Marmoset  ==================================
B D               Gorilla  ==================================
B D                Bonobo  ==================================
B D                 Chimp  ==================================
B D                 Human  ==================================
B D                Tenrec  ==================================
B D               Tarsier  ==================================
B D            Tree shrew  ==================================
B D              Hedgehog  ==================================
B D                  Pika  ==================================
B D             Zebrafish  ==================================
B D         X. tropicalis  ==================================
B D                   Cow  ==================================
B D               Chicken  ==================================
B D                 Shrew  ==================================
B D              Elephant  ==================================
B D              Squirrel  ==================================
B D                   Pig  ==================================
B D                Rabbit  ==================================
B D      Chinese pangolin  ==================================
B D               Dolphin  ==================================
B D              Bushbaby  ==================================
                  Beaver  ==================================
B D  Malayan flying lemur  ==================================
           GCF_003668045  ==================================

Alignment block 36 of 162 in window, 56698309 - 56698314, 6 bps 
B D                 Mouse  aagcca
B D                   Rat  atgctg
B D               Dolphin  actccc
B D            Guinea pig  ======
B D                 Sheep  ======
B D                Rhesus  ======
B D    Hawaiian monk seal  ======
B D                   Dog  ======
B D                 Horse  ======
B D              Marmoset  ======
B D               Gorilla  ======
B D                Bonobo  ======
B D                 Chimp  ======
B D                 Human  ======
B D                Tenrec  ======
B D               Tarsier  ======
B D            Tree shrew  ======
B D              Hedgehog  ======
B D                  Pika  ======
B D             Zebrafish  ======
B D         X. tropicalis  ======
B D                   Cow  ======
B D               Chicken  ======
B D                 Shrew  ======
B D              Elephant  ======
B D              Squirrel  ======
B D                   Pig  ======
B D                Rabbit  ======
B D      Chinese pangolin  ======
B D              Bushbaby  ======
                  Beaver  ======
B D  Malayan flying lemur  ======
           GCF_003668045  ======

Alignment block 37 of 162 in window, 56698315 - 56699971, 1657 bps 
B D                 Mouse  tttttctctttctttttagaaaacaaacaaaccaataaaacacggtgaaa---aagtcaaagagaaacat
B D                   Rat  tctttctctttctttttagaaaacaaacaaaccaataaaacaagatgaaagtgaaagaaaagaaaaatag
B D            Guinea pig  ======================================================================
B D                 Sheep  ======================================================================
B D                Rhesus  ======================================================================
B D    Hawaiian monk seal  ======================================================================
B D                   Dog  ======================================================================
B D                 Horse  ======================================================================
B D              Marmoset  ======================================================================
B D               Gorilla  ======================================================================
B D                Bonobo  ======================================================================
B D                 Chimp  ======================================================================
B D                 Human  ======================================================================
B D                Tenrec  ======================================================================
B D               Tarsier  ======================================================================
B D            Tree shrew  ======================================================================
B D              Hedgehog  ======================================================================
B D                  Pika  ======================================================================
B D             Zebrafish  ======================================================================
B D         X. tropicalis  ======================================================================
B D                   Cow  ======================================================================
B D               Chicken  ======================================================================
B D                 Shrew  ======================================================================
B D              Elephant  ======================================================================
B D              Squirrel  ======================================================================
B D                   Pig  ======================================================================
B D                Rabbit  ======================================================================
B D      Chinese pangolin  ======================================================================
B D              Bushbaby  ======================================================================
                  Beaver  ======================================================================
B D  Malayan flying lemur  ======================================================================
           GCF_003668045  ======================================================================

                    Mouse  aagaaacacatacatgcacatgcacacaaacacacatgaaataaaaaataaaaacacaaaatcagaatcc
                      Rat  aaaaaacacatacatgcacacgaacacagaaatacacaaaataaaaaagtaaagcacaaaatcagaatcc
               Guinea pig  ======================================================================
                    Sheep  ======================================================================
                   Rhesus  ======================================================================
       Hawaiian monk seal  ======================================================================
                      Dog  ======================================================================
                    Horse  ======================================================================
                 Marmoset  ======================================================================
                  Gorilla  ======================================================================
                   Bonobo  ======================================================================
                    Chimp  ======================================================================
                    Human  ======================================================================
                   Tenrec  ======================================================================
                  Tarsier  ======================================================================
               Tree shrew  ======================================================================
                 Hedgehog  ======================================================================
                     Pika  ======================================================================
                Zebrafish  ======================================================================
            X. tropicalis  ======================================================================
                      Cow  ======================================================================
                  Chicken  ======================================================================
                    Shrew  ======================================================================
                 Elephant  ======================================================================
                 Squirrel  ======================================================================
                      Pig  ======================================================================
                   Rabbit  ======================================================================
         Chinese pangolin  ======================================================================
                 Bushbaby  ======================================================================
                   Beaver  ======================================================================
     Malayan flying lemur  ======================================================================
            GCF_003668045  ======================================================================

                    Mouse  ataacctacaatcaagcaaacggtaaggtaaaaaacaaaaatgaccaaatgaagtaatatgcgattttta
                      Rat  ataacctacaat----caaacagtaaggtaa-----aaaaatatccaaatgaagtgatatgaga-tgtaa
               Guinea pig  ======================================================================
                    Sheep  ======================================================================
                   Rhesus  ======================================================================
       Hawaiian monk seal  ======================================================================
                      Dog  ======================================================================
                    Horse  ======================================================================
                 Marmoset  ======================================================================
                  Gorilla  ======================================================================
                   Bonobo  ======================================================================
                    Chimp  ======================================================================
                    Human  ======================================================================
                   Tenrec  ======================================================================
                  Tarsier  ======================================================================
               Tree shrew  ======================================================================
                 Hedgehog  ======================================================================
                     Pika  ======================================================================
                Zebrafish  ======================================================================
            X. tropicalis  ======================================================================
                      Cow  ======================================================================
                  Chicken  ======================================================================
                    Shrew  ======================================================================
                 Elephant  ======================================================================
                 Squirrel  ======================================================================
                      Pig  ======================================================================