Simple Tandem Repeats by TRF (TATTATTATTATAAA)
Position: NC_048272.1:14126524-14126598
Genomic Size: 75
View DNA for this feature (GCF_009762535.1/fNotCel1.pri Dec. 2019)

Length of repeat unit15
Mean number of copies of repeat4.7
Length of consensus sequence15
Percentage Match73
Percentage Indel15
Alignment Score = 2*match-7*mismatch-7*indel; minscore=5060
Percent of A's in repeat unit41
Percent of C's in repeat unit6
Percent of G's in repeat unit1
Percent of T's in repeat unit50
Sequence of repeat unit elementTATTATTATTATAAA
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This track displays simple tandem repeats (possibly imperfect repeats) on the 18 Dec 2019 Notolabrus celidotus/GCF_009762535.1_fNotCel1.pri/GCF_009762535.1 genome assembly, located by Tandem Repeats Finder (TRF) which is specialized for this purpose. These repeats can occur within coding regions of genes and may be quite polymorphic. Repeat expansions are sometimes associated with specific diseases.

There are 393,328 items in the track covering 46,882,675 bases, assembly size 846,744,125 bases, percent coverage % 5.54.


For more information about the TRF program, see Benson (1999).


TRF was written by Gary Benson.


Benson G. Tandem repeats finder: a program to analyze DNA sequences. Nucleic Acids Res. 1999 Jan 15;27(2):573-80. PMID: 9862982; PMC: PMC148217


This track was generated using a modification of a program developed by G. Miklem and L. Hillier (unpublished).


Gardiner-Garden M, Frommer M. CpG islands in vertebrate genomes. J Mol Biol. 1987 Jul 20;196(2):261-82. PMID: 3656447