This track displays simple tandem repeats (possibly imperfect repeats) on
the 09 Jul 2016 Theobroma cacao/GCF_000208745.1_Criollo_cocoa_genome_V2/GCF_000208745.1 genome assembly,
located by Tandem Repeats
Finder (TRF) which is specialized for this purpose. These repeats can
occur within coding regions of genes and may be quite
polymorphic. Repeat expansions are sometimes associated with specific
There are 99,229 items in the track covering 8,649,988 bases,
assembly size 324,879,930 bases, percent coverage % 2.66.
For more information about the TRF program, see Benson (1999).
TRF was written by
Tandem repeats finder: a program to analyze DNA sequences.
Nucleic Acids Res. 1999 Jan 15;27(2):573-80.
PMID: 9862982; PMC: PMC148217
This track was generated using a modification of a program developed by G. Miklem and L. Hillier
Gardiner-Garden M, Frommer M.
CpG islands in vertebrate genomes.
J Mol Biol. 1987 Jul 20;196(2):261-82.