AGP gap (yes)
 
Item: yes
Position: NC_047650.1:14669883-14669982
Genomic Size: 100
View DNA for this feature (GCF_902201215.1/ALMONDv2 Oct. 2019)
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Go to Gap (AGP defined) track controls


Description

This track shows the gaps in the 10 Oct 2019 Prunus dulcis/GCF_902201215.1_ALMONDv2 genome assembly.

Genome assembly procedures are covered in the NCBI assembly documentation.
NCBI also provides specific information about this assembly.

The definition of the gaps in this assembly is from the AGP file: GCF_902201215.1_ALMONDv2.agp.gz
The NCBI document AGP Specification describes the format of the AGP file.

Gaps are represented as black boxes in this track. If the relative order and orientation of the contigs on either side of the gap is supported by read pair data, it is a bridged gap and a white line is drawn through the black box representing the gap.

This assembly has 1,008 gaps, with the following principal types of gaps:

  • scaffold - gaps between scaffolds in chromosome assemblies (count: 1,008; all of size 100 bases)