Assembly (AABR07003033.1)
 
NCBI Nucleotide database AABR07003033.1
Item: AABR07003033.1
Score: 0
Position: chr1:94147732-94266269
Genomic Size: 118538
Strand: +
View DNA for this feature (GCF_000001895.5/Norway rat Rnor6.0)
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Description

This track shows the sequences used in the 01 Jul 2014 Rattus norvegicus/GCF_000001895.5_Rnor_6.0 genome assembly.

Genome assembly procedures are covered in the NCBI assembly documentation.
NCBI also provides specific information about this assembly.

The definition of the gaps in this assembly is from the AGP file: GCF_000001895.5_Rnor_6.0.agp.gz
The NCBI document AGP Specification describes the format of the AGP file.

In dense mode, this track depicts the contigs that make up the currently viewed scaffold. Contig boundaries are distinguished by the use of alternating gold and brown coloration. Where gaps exist between contigs, spaces are shown between the gold and brown blocks. The relative order and orientation of the contigs within a scaffold is always known; therefore, a line is drawn in the graphical display to bridge the blocks.

This assembly has 76,195 component parts, with the following principal types of parts:

  • O - one other sequence (chrM/NC_001665.2)
  • A - active finishing (count: 42)
  • F - finished sequence (count: 1,116)
  • D - draft sequence (count: 1,300)
  • W - whole genome shotgun (count: 73,736)