AGP gap (yes)
 
Item: yes
Position: KE749393.1:116521-116525
Genomic Size: 5
View DNA for this feature (GCA_000465285.1/ASM46528v1 Sep. 2013)
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Go to Gap (AGP defined) track controls


Description

This track shows the gaps in the 13 Sep 2013 Eidolon helvum/GCA_000465285.1_ASM46528v1 genome assembly.

Genome assembly procedures are covered in the NCBI assembly documentation.
NCBI also provides specific information about this assembly.

The definition of the gaps in this assembly is from the AGP file: GCA_000465285.1_ASM46528v1.agp.gz
The NCBI document AGP Specification describes the format of the AGP file.

Gaps are represented as black boxes in this track. If the relative order and orientation of the contigs on either side of the gap is supported by read pair data, it is a bridged gap and a white line is drawn through the black box representing the gap.

This assembly has 154,908 gaps, with the following principal types of gaps:

  • scaffold - gaps between scaffolds in chromosome assemblies (count: 154,908; size range: 1 - 408 bases)