MGC Clone BC148232.1
  Pax2
Mus musculus paired box gene 2, mRNA (cDNA clone MGC:161328 IMAGE:40142573), complete cds.
RefSeq: NR_105831.1
RefSeq Summary: microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]. Sequence Note: This record represents a predicted microRNA stem-loop as defined by miRBase. Some sequence at the 5' and 3' ends may not be included in the intermediate precursor miRNA produced by Drosha cleavage.
Clone Source: Mammalian Gene Collection

MGC Clone Information and Links
 
GenePax2
ProductPax2 protein
Tissuepcr rescued clones
LibraryNIH_MGC_285
Developmentn/a
CDS5..1189
Modification date2007-08-27
Links
MGC clone database
IMAGE clone 40142573
Genbank BC148232
RefSeq NR_105831.1
CCDS37998.2
UCSC Gene ENSMUST00000004340.10

RefSeq CDS isoform similarity of MGC clone BC148232
 
RefSeqPositionSimilarity
NR_105831.1chr19:44808406-448085290.00%
NM_001368744.1chr19:44746601-4483826996.22%
NM_001368745.1chr19:44746601-4483826996.10%
NM_001368746.1chr19:44756906-4483826997.04%
NM_001368747.1chr19:44756906-4483826996.56%
NM_001368748.1chr19:44756906-4483826996.43%
NM_001368743.1chr19:44755752-4483826993.88%
NM_001368749.1chr19:44756906-4483826999.87%
NM_001368750.1chr19:44756906-4483826992.56%
NM_001368751.1chr19:44756906-4483826996.19%
NM_011037.5chr19:44756906-44838269100.00%
This table compares the similarity of the BLAT genomic alignments of the CDS of this MGC clone with alignment of RefSeq mRNA CDSs. This is a metric of the similarity of the exon structure of the mRNAs, rather than a measure of their nucleotide sequence similarity.

Sequences
 
mRNAProtein
Genomic
Reference genome mRNA

Alignments
 
genomic (browser)span mRNA (alignment details)identityaligned
chr19:44757394-4483603078637+ BC148232:5-1192100.00%99.25%

NCBI Clone Validation
  No clone discrepancies annotated