AGP gap (yes)
Item: yes
Position: LVCL01S0001936.1:635625-635625
Genomic Size: 1
View DNA for this feature (GCA_001660835.1/ASM166083v1 Jun. 2016)
View table schema

Go to Gap (AGP defined) track controls


This track shows the gaps in the 08 Jun 2016 Okapia johnstoni/GCA_001660835.1_ASM166083v1 genome assembly.

Genome assembly procedures are covered in the NCBI assembly documentation.
NCBI also provides specific information about this assembly.

The definition of the gaps in this assembly is from the AGP file: GCA_001660835.1_ASM166083v1.agp.gz
The NCBI document AGP Specification describes the format of the AGP file.

Gaps are represented as black boxes in this track. If the relative order and orientation of the contigs on either side of the gap is supported by read pair data, it is a bridged gap and a white line is drawn through the black box representing the gap.

This assembly has 376,008 gaps, with the following principal types of gaps:

  • contig - gaps between contigs in scaffolds (count: 376,008; size range: 1 - 12,301 bases)