This track displays simple tandem repeats (possibly imperfect repeats) on
the 17 Feb 2021 Ictidomys tridecemlineatus/GCF_016881025.1_HiC_Itri_2/GCF_016881025.1 genome assembly,
located by Tandem Repeats
Finder (TRF) which is specialized for this purpose. These repeats can
occur within coding regions of genes and may be quite
polymorphic. Repeat expansions are sometimes associated with specific
There are 640,624 items in the track covering 40,556,393 bases,
assembly size 2,478,965,571 bases, percent coverage % 1.64.
For more information about the TRF program, see Benson (1999).
TRF was written by
Tandem repeats finder: a program to analyze DNA sequences.
Nucleic Acids Res. 1999 Jan 15;27(2):573-80.
PMID: 9862982; PMC: PMC148217
This track was generated using a modification of a program developed by G. Miklem and L. Hillier
Gardiner-Garden M, Frommer M.
CpG islands in vertebrate genomes.
J Mol Biol. 1987 Jul 20;196(2):261-82.