Simple Tandem Repeats by TRF (CCTTCTTGG)
Position: NW_006912049.1:167360-167393
Genomic Size: 34
View DNA for this feature (GCF_000523435.1/ascomycetes B.zeicola 26-R-13)

Length of repeat unit9
Mean number of copies of repeat3.8
Length of consensus sequence9
Percentage Match88
Percentage Indel0
Alignment Score = 2*match-7*mismatch-7*indel; minscore=5050
Percent of A's in repeat unit0
Percent of C's in repeat unit38
Percent of G's in repeat unit14
Percent of T's in repeat unit47
Sequence of repeat unit elementCCTTCTTGG
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This track displays simple tandem repeats (possibly imperfect repeats) on the 30 Jan 2014 Bipolaris zeicola 26-R-13/GCF_000523435.1_Cochliobolus_carbonum_v1.0/GCF_000523435.1 genome assembly, located by Tandem Repeats Finder (TRF) which is specialized for this purpose. These repeats can occur within coding regions of genes and may be quite polymorphic. Repeat expansions are sometimes associated with specific diseases.

There are 3,147 items in the track covering 139,120 bases, assembly size 31,267,936 bases, percent coverage % 0.44.


For more information about the TRF program, see Benson (1999).


TRF was written by Gary Benson.


Benson G. Tandem repeats finder: a program to analyze DNA sequences. Nucleic Acids Res. 1999 Jan 15;27(2):573-80. PMID: 9862982; PMC: PMC148217


This track was generated using a modification of a program developed by G. Miklem and L. Hillier (unpublished).


Gardiner-Garden M, Frommer M. CpG islands in vertebrate genomes. J Mol Biol. 1987 Jul 20;196(2):261-82. PMID: 3656447