Simple Tandem Repeats by TRF (TTAATTGAA)
Position: OU342673.1:14474974-14474999
Genomic Size: 26
View DNA for this feature (GCA_910589285.1/ilMytFerr1.1 Jul. 2021)

Length of repeat unit9
Mean number of copies of repeat2.9
Length of consensus sequence9
Percentage Match100
Percentage Indel0
Alignment Score = 2*match-7*mismatch-7*indel; minscore=5052
Percent of A's in repeat unit42
Percent of C's in repeat unit0
Percent of G's in repeat unit11
Percent of T's in repeat unit46
Sequence of repeat unit elementTTAATTGAA
Data schema/format description and download

Go to Simple Repeats track controls


This track displays simple tandem repeats (possibly imperfect repeats) on the 07 Jul 2021 Mythimna ferrago/GCA_910589285.1_ilMytFerr1.1/GCA_910589285.1 genome assembly, located by Tandem Repeats Finder (TRF) which is specialized for this purpose. These repeats can occur within coding regions of genes and may be quite polymorphic. Repeat expansions are sometimes associated with specific diseases.

There are 200,504 items in the track covering 25,994,303 bases, assembly size 861,042,006 bases, percent coverage % 3.02.


For more information about the TRF program, see Benson (1999).


TRF was written by Gary Benson.


Benson G. Tandem repeats finder: a program to analyze DNA sequences. Nucleic Acids Res. 1999 Jan 15;27(2):573-80. PMID: 9862982; PMC: PMC148217


This track was generated using a modification of a program developed by G. Miklem and L. Hillier (unpublished).


Gardiner-Garden M, Frommer M. CpG islands in vertebrate genomes. J Mol Biol. 1987 Jul 20;196(2):261-82. PMID: 3656447