AB351620
 

Information on mRNA AB351620

Description: Mus musculus non-coding RNA, oocyte_piRNA2436, complete sequence.
Gene: n/a
Product: n/a
Author: Watanabe,T., Totoki,Y., Toyoda,A., Kaneda,M., Kuramochi-Miyagawa,S., Obata,Y., Chiba,H., Kohara,Y., Kono,T., Nakano,T., Surani,M.A., Sakaki,Y. and Sasaki,H.
Organism: Mus musculus
Tissue: ovary
Development stage: p8
Cell line: n/a
Sex: n/a
Library: n/a
Clone: n/a
CDS: n/a
Date: 2008-04-24
Version: 1
mRNA sequence: AB351620
Position: chr12:56971603-56971628

mRNA/Genomic Alignments

The alignment you clicked on is first in the table below.
BROWSER | SIZE IDENTITY CHROMOSOME  STRAND    START     END              QUERY      START  END  TOTAL
-----------------------------------------------------------------------------------------------------
browser |    26  100.0%         12     -  56971603  56971628              AB351620     1    26    26
browser |    26  100.0%          1     +   6599019   6599044              AB351620     1    26    26
browser |    26  100.0%          1     +  14137571  14137596              AB351620     1    26    26
browser |    26  100.0%          1     -  14326625  14326650              AB351620     1    26    26
browser |    26  100.0%          1     +  21840204  21840229              AB351620     1    26    26
browser |    26  100.0%          1     -  28420794  28420819              AB351620     1    26    26
browser |    26  100.0%          1     +  29628506  29628531              AB351620     1    26    26
browser |    26  100.0%          1     -  31584285  31584310              AB351620     1    26    26
browser |    26  100.0%          1     -  35142383  35142408              AB351620     1    26    26
browser |    26  100.0%          1     +  37866509  37866534              AB351620     1    26    26
browser |    26  100.0%          1     +  40550294  40550319              AB351620     1    26    26
browser |    26  100.0%          1     -  53152783  53152808              AB351620     1    26    26
browser |    26  100.0%          1     -  56307380  56307405              AB351620     1    26    26
browser |    26  100.0%          1     -  64198970  64198995              AB351620     1    26    26
browser |    26  100.0%          1     +  68391429  68391454              AB351620     1    26    26
browser |    26  100.0%          1     +  79086041  79086066              AB351620     1    26    26
browser |    26  100.0%          1     - 100323949 100323974              AB351620     1    26    26
browser |    26  100.0%          1     + 102002944 102002969              AB351620     1    26    26
browser |    26  100.0%          1     - 104290339 104290364              AB351620     1    26    26
browser |    26  100.0%          1     + 106924832 106924857              AB351620     1    26    26
browser |    26  100.0%          1     - 107221276 107221301              AB351620     1    26    26
browser |    26  100.0%          1     - 108513695 108513720              AB351620     1    26    26
browser |    26  100.0%          1     - 110465338 110465363              AB351620     1    26    26
browser |    26  100.0%          1     + 115989761 115989786              AB351620     1    26    26
browser |    26  100.0%          1     + 116245863 116245888              AB351620     1    26    26
browser |    26  100.0%          1     + 117382146 117382171              AB351620     1    26    26
browser |    26  100.0%          1     + 138745069 138745094              AB351620     1    26    26
browser |    26  100.0%          1     + 139231681 139231706              AB351620     1    26    26
browser |    26  100.0%          1     - 140389614 140389639              AB351620     1    26    26
browser |    26  100.0%          1     - 141619248 141619273              AB351620     1    26    26
browser |    25  100.0%          1     - 147035004 147035028              AB351620     1    25    26
browser |    26  100.0%          1     - 166697070 166697095              AB351620     1    26    26
browser |    25  100.0%          1     - 172754346 172754370              AB351620     1    25    26
browser |    26  100.0%          1     - 193493005 193493030              AB351620     1    26    26
browser |    26  100.0%         10     +   3748139   3748164              AB351620     1    26    26
browser |    26  100.0%         10     -   4821246   4821271              AB351620     1    26    26
browser |    26  100.0%         10     -   5083553   5083578              AB351620     1    26    26
browser |    26  100.0%         10     -  32099115  32099140              AB351620     1    26    26
browser |    26  100.0%         10     +  32304216  32304241              AB351620     1    26    26
browser |    26  100.0%         10     +  33057887  33057912              AB351620     1    26    26
browser |    26  100.0%         10     +  33726011  33726036              AB351620     1    26    26
browser |    26  100.0%         10     +  35961292  35961317              AB351620     1    26    26
browser |    26  100.0%         10     -  37944523  37944548              AB351620     1    26    26
browser |    26  100.0%         10     -  52479420  52479445              AB351620     1    26    26
browser |    26  100.0%         10     -  53657080  53657105              AB351620     1    26    26
browser |    26  100.0%         10     -  65419660  65419685              AB351620     1    26    26
browser |    26  100.0%         10     -  66815114  66815139              AB351620     1    26    26
browser |    26  100.0%         10     +  72137688  72137713              AB351620     1    26    26
browser |    26  100.0%         10     +  73592796  73592821              AB351620     1    26    26
browser |    26  100.0%         10     -  88674265  88674290              AB351620     1    26    26
browser |    26  100.0%         10     -  88706574  88706599              AB351620     1    26    26
browser |    26  100.0%         10     -  91140683  91140708              AB351620     1    26    26
browser |    26  100.0%         10     -  98062496  98062521              AB351620     1    26    26
browser |    26  100.0%         10     - 101193266 101193291              AB351620     1    26    26
browser |    26  100.0%         10     - 102240408 102240433              AB351620     1    26    26
browser |    26  100.0%         10     - 109906359 109906384              AB351620     1    26    26
browser |    24  100.0%         10     + 123348788 123348811              AB351620     1    24    26
browser |    26  100.0%         10     + 125883467 125883492              AB351620     1    26    26
browser |    26  100.0%         11     +   7210008   7210033              AB351620     1    26    26
browser |    25  100.0%         11     +   8306599   8306623              AB351620     2    26    26
browser |    26  100.0%         11     +  14051956  14051981              AB351620     1    26    26
browser |    26  100.0%         11     +  15223104  15223129              AB351620     1    26    26
browser |    26  100.0%         11     -  26453243  26453268              AB351620     1    26    26
browser |    26  100.0%         11     -  28304241  28304266              AB351620     1    26    26
browser |    26  100.0%         11     +  28997118  28997143              AB351620     1    26    26
browser |    26  100.0%         11     +  37394027  37394052              AB351620     1    26    26
browser |    26  100.0%         11     -  41446381  41446406              AB351620     1    26    26
browser |    26  100.0%         11     -  41485618  41485643              AB351620     1    26    26
browser |    26  100.0%         11     +  48556221  48556246              AB351620     1    26    26
browser |    25  100.0%         11     +  90828293  90828317              AB351620     2    26    26
browser |    26  100.0%         11     -  92154799  92154824              AB351620     1    26    26
browser |    26  100.0%         12     +  12182107  12182132              AB351620     1    26    26
browser |    26  100.0%         12     -  14407406  14407431              AB351620     1    26    26
browser |    26  100.0%         12     +  26075367  26075392              AB351620     1    26    26
browser |    26  100.0%         12     -  31616125  31616150              AB351620     1    26    26
browser |    26  100.0%         12     -  34311133  34311158              AB351620     1    26    26
browser |    26  100.0%         12     -  35755509  35755534              AB351620     1    26    26
browser |    26  100.0%         12     +  35836093  35836118              AB351620     1    26    26
browser |    26  100.0%         12     -  42477789  42477814              AB351620     1    26    26
browser |    26  100.0%         12     +  50281861  50281886              AB351620     1    26    26
browser |    26  100.0%         12     -  52109038  52109063              AB351620     1    26    26
browser |    26  100.0%         12     +  60778762  60778787              AB351620     1    26    26
browser |    26  100.0%         12     +  61309089  61309114              AB351620     1    26    26
browser |    26  100.0%         12     +  61755654  61755679              AB351620     1    26    26
browser |    26  100.0%         12     -  67871919  67871944              AB351620     1    26    26
browser |    26  100.0%         12     -  75482036  75482061              AB351620     1    26    26
browser |    26  100.0%         12     -  88804479  88804504              AB351620     1    26    26
browser |    26  100.0%         12     +  89010712  89010737              AB351620     1    26    26
browser |    26  100.0%         12     -  97408535  97408560              AB351620     1    26    26
browser |    26  100.0%         12     -  99693853  99693878              AB351620     1    26    26
browser |    26  100.0%         12     + 101228904 101228929              AB351620     1    26    26
browser |    26  100.0%         12     + 101587459 101587484              AB351620     1    26    26
browser |    26  100.0%         12     + 119423359 119423384              AB351620     1    26    26
browser |    26  100.0%         13     +   9014832   9014857              AB351620     1    26    26
browser |    26  100.0%         13     -  10973288  10973313              AB351620     1    26    26
browser |    26  100.0%         13     +  15318329  15318354              AB351620     1    26    26
browser |    26  100.0%         13     +  15325943  15325968              AB351620     1    26    26
browser |    26  100.0%         13     +  18723029  18723054              AB351620     1    26    26
browser |    26  100.0%         13     -  22448483  22448508              AB351620     1    26    26
browser |    26  100.0%         13     +  24246142  24246167              AB351620     1    26    26
browser |    26  100.0%         13     +  26071364  26071389              AB351620     1    26    26
browser |    26  100.0%         13     -  26940219  26940244              AB351620     1    26    26
browser |    26  100.0%         13     +  33353051  33353076              AB351620     1    26    26
browser |    26  100.0%         13     -  34735865  34735890              AB351620     1    26    26
browser |    26  100.0%         13     -  34809693  34809718              AB351620     1    26    26
browser |    26  100.0%         13     +  39104794  39104819              AB351620     1    26    26
browser |    26  100.0%         13     +  70417674  70417699              AB351620     1    26    26
browser |    26  100.0%         13     +  77675833  77675858              AB351620     1    26    26
browser |    26  100.0%         13     -  78236764  78236789              AB351620     1    26    26
browser |    26  100.0%         13     -  78477435  78477460              AB351620     1    26    26
browser |    25  100.0%         13     -  86631889  86631913              AB351620     1    25    26
browser |    26  100.0%         13     -  94675578  94675603              AB351620     1    26    26
browser |    26  100.0%         13     + 100365341 100365366              AB351620     1    26    26
browser |    26  100.0%         13     + 107259771 107259796              AB351620     1    26    26
browser |    26  100.0%         13     - 107485551 107485576              AB351620     1    26    26
browser |    26  100.0%         13     + 111238208 111238233              AB351620     1    26    26
browser |    26  100.0%         13     - 115042411 115042436              AB351620     1    26    26
browser |    26  100.0%         13     + 116213344 116213369              AB351620     1    26    26
browser |    24  100.0%         13     + 118339504 118339527              AB351620     3    26    26
browser |    26  100.0%         14     -   7817826   7817851              AB351620     1    26    26
browser |    24  100.0%         14     -   9662770   9662793              AB351620     3    26    26
browser |    26  100.0%         14     -   9732186   9732211              AB351620     1    26    26
browser |    26  100.0%         14     +  27890801  27890826              AB351620     1    26    26
browser |    26  100.0%         14     +  37532089  37532114              AB351620     1    26    26
browser |    26  100.0%         14     -  39263563  39263588              AB351620     1    26    26
browser |    26  100.0%         14     -  39904150  39904175              AB351620     1    26    26
browser |    26  100.0%         14     +  67127624  67127649              AB351620     1    26    26
browser |    26  100.0%         14     +  75300612  75300637              AB351620     1    26    26
browser |    26  100.0%         14     -  77281674  77281699              AB351620     1    26    26
browser |    26  100.0%         14     +  82900683  82900708              AB351620     1    26    26
browser |    26  100.0%         14     +  89027107  89027132              AB351620     1    26    26
browser |    26  100.0%         14     -  91764418  91764443              AB351620     1    26    26
browser |    26  100.0%         14     +  97026876  97026901              AB351620     1    26    26
browser |    26  100.0%         14     -  98579843  98579868              AB351620     1    26    26
browser |    24  100.0%         14     + 102225563 102225586              AB351620     1    24    26
browser |    26  100.0%         14     - 105651133 105651158              AB351620     1    26    26
browser |    26  100.0%         14     + 106014532 106014557              AB351620     1    26    26
browser |    26  100.0%         14     - 109472540 109472565              AB351620     1    26    26
browser |    26  100.0%         14     - 109926385 109926410              AB351620     1    26    26
browser |    25  100.0%         14     + 115227454 115227478              AB351620     1    25    26
browser |    26  100.0%         14     - 117124674 117124699              AB351620     1    26    26
browser |    26  100.0%         15     -  14841276  14841301              AB351620     1    26    26
browser |    26  100.0%         15     -  16563235  16563260              AB351620     1    26    26
browser |    26  100.0%         15     +  16945343  16945368              AB351620     1    26    26
browser |    26  100.0%         15     -  18193750  18193775              AB351620     1    26    26
browser |    25  100.0%         15     +  18453672  18453696              AB351620     1    25    26
browser |    26  100.0%         15     +  19165861  19165886              AB351620     1    26    26
browser |    26  100.0%         15     -  24176135  24176160              AB351620     1    26    26
browser |    26  100.0%         15     +  27402956  27402981              AB351620     1    26    26
browser |    26  100.0%         15     -  27454308  27454333              AB351620     1    26    26
browser |    26  100.0%         15     +  29097086  29097111              AB351620     1    26    26
browser |    26  100.0%         15     +  29901273  29901298              AB351620     1    26    26
browser |    26  100.0%         15     -  33848531  33848556              AB351620     1    26    26
browser |    26  100.0%         15     -  44633301  44633326              AB351620     1    26    26
browser |    26  100.0%         15     -  47883590  47883615              AB351620     1    26    26
browser |    26  100.0%         15     -  53488543  53488568              AB351620     1    26    26
browser |    26  100.0%         15     -  62188365  62188390              AB351620     1    26    26
browser |    26  100.0%         15     -  64869986  64870011              AB351620     1    26    26
browser |    26  100.0%         15     +  72016661  72016686              AB351620     1    26    26
browser |    26  100.0%         15     +  90713376  90713401              AB351620     1    26    26
browser |    26  100.0%         15     + 103481322 103481347              AB351620     1    26    26
browser |    26  100.0%         16     +   6608078   6608103              AB351620     1    26    26
browser |    26  100.0%         16     +  12307116  12307141              AB351620     1    26    26
browser |    26  100.0%         16     +  15259026  15259051              AB351620     1    26    26
browser |    26  100.0%         16     +  16524943  16524968              AB351620     1    26    26
browser |    26  100.0%         16     -  27940486  27940511              AB351620     1    26    26
browser |    26  100.0%         16     +  37463478  37463503              AB351620     1    26    26
browser |    26  100.0%         16     -  41067165  41067190              AB351620     1    26    26
browser |    26  100.0%         16     -  41326050  41326075              AB351620     1    26    26
browser |    26  100.0%         16     +  59813379  59813404              AB351620     1    26    26
browser |    24  100.0%         16     -  64796756  64796779              AB351620     1    24    26
browser |    26  100.0%         16     -  66378113  66378138              AB351620     1    26    26
browser |    26  100.0%         16     -  67215449  67215474              AB351620     1    26    26
browser |    26  100.0%         16     -  68000564  68000589              AB351620     1    26    26
browser |    26  100.0%         16     +  73578319  73578344              AB351620     1    26    26
browser |    25  100.0%         16     -  89348593  89348617              AB351620     2    26    26
browser |    26  100.0%         17     -  17294650  17294675              AB351620     1    26    26
browser |    26  100.0%         17     -  17351820  17351845              AB351620     1    26    26
browser |    26  100.0%         17     +  18260301  18260326              AB351620     1    26    26
browser |    26  100.0%         17     +  19960918  19960943              AB351620     1    26    26
browser |    26  100.0%         17     -  33422686  33422711              AB351620     1    26    26
browser |    26  100.0%         17     +  36782644  36782669              AB351620     1    26    26
browser |    26  100.0%         17     -  37653788  37653813              AB351620     1    26    26
browser |    26  100.0%         17     -  37989255  37989280              AB351620     1    26    26
browser |    26  100.0%         17     -  38333443  38333468              AB351620     1    26    26
browser |    26  100.0%         17     -  41873514  41873539              AB351620     1    26    26
browser |    26  100.0%         17     +  42421314  42421339              AB351620     1    26    26
browser |    26  100.0%         17     +  51243048  51243073              AB351620     1    26    26
browser |    26  100.0%         17     -  52992994  52993019              AB351620     1    26    26
browser |    26  100.0%         17     +  55652489  55652514              AB351620     1    26    26
browser |    26  100.0%         17     -  55933821  55933846              AB351620     1    26    26
browser |    26  100.0%         17     +  58267857  58267882              AB351620     1    26    26
browser |    26  100.0%         17     -  59107168  59107193              AB351620     1    26    26
browser |    25  100.0%         17     +  64150483  64150507              AB351620     1    25    26
browser |    26  100.0%         17     -  66947479  66947504              AB351620     1    26    26
browser |    26  100.0%         17     +  73016561  73016586              AB351620     1    26    26
browser |    26  100.0%         17     +  78475692  78475717              AB351620     1    26    26
browser |    26  100.0%         17     +  91230878  91230903              AB351620     1    26    26
browser |    26  100.0%         18     +   3749834   3749859              AB351620     1    26    26
browser |    26  100.0%         18     +  11261182  11261207              AB351620     1    26    26
browser |    26  100.0%         18     +  11845534  11845559              AB351620     1    26    26
browser |    25  100.0%         18     +  16323439  16323463              AB351620     2    26    26
browser |    26  100.0%         18     +  16365457  16365482              AB351620     1    26    26
browser |    26  100.0%         18     +  18314616  18314641              AB351620     1    26    26
browser |    26  100.0%         18     -  25409880  25409905              AB351620     1    26    26
browser |    26  100.0%         18     +  40429159  40429184              AB351620     1    26    26
browser |    24  100.0%         18     +  40980199  40980222              AB351620     1    24    26
browser |    26  100.0%         18     +  41067898  41067923              AB351620     1    26    26
browser |    26  100.0%         18     +  43084344  43084369              AB351620     1    26    26
browser |    26  100.0%         18     +  48897933  48897958              AB351620     1    26    26
browser |    26  100.0%         18     +  68087057  68087082              AB351620     1    26    26
browser |    26  100.0%         18     -  80840189  80840214              AB351620     1    26    26
browser |    26  100.0%         18     -  89558783  89558808              AB351620     1    26    26
browser |    26  100.0%         19     -   4656780   4656805              AB351620     1    26    26
browser |    26  100.0%         19     -  13275236  13275261              AB351620     1    26    26
browser |    26  100.0%         19     -  19161866  19161891              AB351620     1    26    26
browser |    26  100.0%         19     +  31645292  31645317              AB351620     1    26    26
browser |    26  100.0%         19     +  35338704  35338729              AB351620     1    26    26
browser |    26  100.0%         19     -  50087194  50087219              AB351620     1    26    26
browser |    26  100.0%          2     -   8993331   8993356              AB351620     1    26    26
browser |    26  100.0%          2     -  19503546  19503571              AB351620     1    26    26
browser |    26  100.0%          2     -  28042690  28042715              AB351620     1    26    26
browser |    26  100.0%          2     +  36921078  36921103              AB351620     1    26    26
browser |    26  100.0%          2     +  41499337  41499362              AB351620     1    26    26
browser |    26  100.0%          2     +  47609567  47609592              AB351620     1    26    26
browser |    26  100.0%          2     -  47611815  47611840              AB351620     1    26    26
browser |    24  100.0%          2     +  52361081  52361104              AB351620     3    26    26
browser |    26  100.0%          2     -  53538896  53538921              AB351620     1    26    26
browser |    26  100.0%          2     +  58536934  58536959              AB351620     1    26    26
browser |    26  100.0%          2     -  81703433  81703458              AB351620     1    26    26
browser |    26  100.0%          2     -  85008186  85008211              AB351620     1    26    26
browser |    26  100.0%          2     -  88022875  88022900              AB351620     1    26    26
browser |    26  100.0%          2     +  89628928  89628953              AB351620     1    26    26
browser |    26  100.0%          2     -  89906231  89906256              AB351620     1    26    26
browser |    26  100.0%          2     +  90440266  90440291              AB351620     1    26    26
browser |    26  100.0%          2     -  95801751  95801776              AB351620     1    26    26
browser |    26  100.0%          2     -  97813034  97813059              AB351620     1    26    26
browser |    26  100.0%          2     -  98319171  98319196              AB351620     1    26    26
browser |    26  100.0%          2     - 101615460 101615485              AB351620     1    26    26
browser |    26  100.0%          2     + 102814138 102814163              AB351620     1    26    26
browser |    26  100.0%          2     + 109011859 109011884              AB351620     1    26    26
browser |    26  100.0%          2     + 109024788 109024813              AB351620     1    26    26
browser |    26  100.0%          2     + 111755857 111755882              AB351620     1    26    26
browser |    24  100.0%          2     - 111761179 111761202              AB351620     3    26    26
browser |    26  100.0%          2     + 112705674 112705699              AB351620     1    26    26
browser |    26  100.0%          2     + 129135611 129135636              AB351620     1    26    26
browser |    26  100.0%          2     - 132850021 132850046              AB351620     1    26    26
browser |    26  100.0%          2     - 134530081 134530106              AB351620     1    26    26
browser |    25  100.0%          2     - 144818459 144818483              AB351620     1    25    26
browser |    26  100.0%          2     - 147064011 147064036              AB351620     1    26    26
browser |    26  100.0%          3     -   6564105   6564130              AB351620     1    26    26
browser |    26  100.0%          3     -   8096891   8096916              AB351620     1    26    26
browser |    26  100.0%          3     +  13054974  13054999              AB351620     1    26    26
browser |    26  100.0%          3     +  13684106  13684131              AB351620     1    26    26
browser |    26  100.0%          3     +  17469352  17469377              AB351620     1    26    26
browser |    26  100.0%          3     -  22884296  22884321              AB351620     1    26    26
browser |    24  100.0%          3     +  24804099  24804122              AB351620     1    24    26
browser |    26  100.0%          3     -  43127776  43127801              AB351620     1    26    26
browser |    26  100.0%          3     +  44456751  44456776              AB351620     1    26    26
browser |    26  100.0%          3     +  49550219  49550244              AB351620     1    26    26
browser |    26  100.0%          3     -  55002815  55002840              AB351620     1    26    26
browser |    26  100.0%          3     +  64281822  64281847              AB351620     1    26    26
browser |    26  100.0%          3     +  70779276  70779301              AB351620     1    26    26
browser |    26  100.0%          3     +  71065701  71065726              AB351620     1    26    26
browser |    26  100.0%          3     -  75068669  75068694              AB351620     1    26    26
browser |    26  100.0%          3     +  76458159  76458184              AB351620     1    26    26
browser |    26  100.0%          3     -  77371066  77371091              AB351620     1    26    26
browser |    26  100.0%          3     +  80400777  80400802              AB351620     1    26    26
browser |    26  100.0%          3     -  82275158  82275183              AB351620     1    26    26
browser |    26  100.0%          3     +  83001624  83001649              AB351620     1    26    26
browser |    26  100.0%          3     + 110885003 110885028              AB351620     1    26    26
browser |    26  100.0%          3     - 111646153 111646178              AB351620     1    26    26
browser |    26  100.0%          3     - 112015164 112015189              AB351620     1    26    26
browser |    26  100.0%          3     + 113456842 113456867              AB351620     1    26    26
browser |    24  100.0%          3     - 124785235 124785258              AB351620     3    26    26
browser |    25  100.0%          3     + 125673093 125673117              AB351620     1    25    26
browser |    26  100.0%          3     - 126182748 126182773              AB351620     1    26    26
browser |    26  100.0%          3     + 127777474 127777499              AB351620     1    26    26
browser |    26  100.0%          3     - 134363749 134363774              AB351620     1    26    26
browser |    26  100.0%          3     + 136026588 136026613              AB351620     1    26    26
browser |    26  100.0%          3     - 142459395 142459420              AB351620     1    26    26
browser |    26  100.0%          3     - 150484438 150484463              AB351620     1    26    26
browser |    26  100.0%          3     + 159112988 159113013              AB351620     1    26    26
browser |    26  100.0%          3     + 159157709 159157734              AB351620     1    26    26
browser |    26  100.0%          4     +   6763376   6763401              AB351620     1    26    26
browser |    26  100.0%          4     +   7030084   7030109              AB351620     1    26    26
browser |    26  100.0%          4     -  15676541  15676566              AB351620     1    26    26
browser |    26  100.0%          4     +  19185669  19185694              AB351620     1    26    26
browser |    26  100.0%          4     -  21071141  21071166              AB351620     1    26    26
browser |    26  100.0%          4     -  22197410  22197435              AB351620     1    26    26
browser |    26  100.0%          4     -  25253684  25253709              AB351620     1    26    26
browser |    26  100.0%          4     +  25753752  25753777              AB351620     1    26    26
browser |    25  100.0%          4     -  29799831  29799855              AB351620     1    25    26
browser |    26  100.0%          4     +  30008224  30008249              AB351620     1    26    26
browser |    26  100.0%          4     -  31224193  31224218              AB351620     1    26    26
browser |    26  100.0%          4     +  38386691  38386716              AB351620     1    26    26
browser |    26  100.0%          4     +  51463182  51463207              AB351620     1    26    26
browser |    26  100.0%          4     -  67749219  67749244              AB351620     1    26    26
browser |    25  100.0%          4     -  68929131  68929155              AB351620     1    25    26
browser |    26  100.0%          4     -  69875368  69875393              AB351620     1    26    26
browser |    26  100.0%          4     +  74515134  74515159              AB351620     1    26    26
browser |    26  100.0%          4     -  79427046  79427071              AB351620     1    26    26
browser |    26  100.0%          4     +  80136459  80136484              AB351620     1    26    26
browser |    26  100.0%          4     -  80141651  80141676              AB351620     1    26    26
browser |    26  100.0%          4     +  92404306  92404331              AB351620     1    26    26
browser |    26  100.0%          4     + 111534836 111534861              AB351620     1    26    26
browser |    26  100.0%          4     + 143414976 143415001              AB351620     1    26    26
browser |    26  100.0%          5     -   4842355   4842380              AB351620     1    26    26
browser |    26  100.0%          5     -   6170690   6170715              AB351620     1    26    26
browser |    26  100.0%          5     +  16916054  16916079              AB351620     1    26    26
browser |    26  100.0%          5     +  18856629  18856654              AB351620     1    26    26
browser |    26  100.0%          5     -  22796728  22796753              AB351620     1    26    26
browser |    26  100.0%          5     +  23196967  23196992              AB351620     1    26    26
browser |    26  100.0%          5     -  26136546  26136571              AB351620     1    26    26
browser |    26  100.0%          5     -  26152644  26152669              AB351620     1    26    26
browser |    26  100.0%          5     -  26182916  26182941              AB351620     1    26    26
browser |    26  100.0%          5     -  26198915  26198940              AB351620     1    26    26
browser |    26  100.0%          5     -  26268848  26268873              AB351620     1    26    26
browser |    26  100.0%          5     -  26282111  26282136              AB351620     1    26    26
browser |    26  100.0%          5     -  26285355  26285380              AB351620     1    26    26
browser |    26  100.0%          5     +  30210497  30210522              AB351620     1    26    26
browser |    26  100.0%          5     -  42175860  42175885              AB351620     1    26    26
browser |    26  100.0%          5     -  45346181  45346206              AB351620     1    26    26
browser |    26  100.0%          5     -  45359210  45359235              AB351620     1    26    26
browser |    26  100.0%          5     +  48655374  48655399              AB351620     1    26    26
browser |    26  100.0%          5     -  50505068  50505093              AB351620     1    26    26
browser |    26  100.0%          5     +  56111426  56111451              AB351620     1    26    26
browser |    26  100.0%          5     +  59220987  59221012              AB351620     1    26    26
browser |    26  100.0%          5     +  67681943  67681968              AB351620     1    26    26
browser |    26  100.0%          5     +  68551428  68551453              AB351620     1    26    26
browser |    26  100.0%          5     -  71408760  71408785              AB351620     1    26    26
browser |    26  100.0%          5     +  78936733  78936758              AB351620     1    26    26
browser |    26  100.0%          5     -  84096259  84096284              AB351620     1    26    26
browser |    26  100.0%          5     +  91002323  91002348              AB351620     1    26    26
browser |    26  100.0%          5     + 127463341 127463366              AB351620     1    26    26
browser |    26  100.0%          6     -   8976471   8976496              AB351620     1    26    26
browser |    26  100.0%          6     -   9613030   9613055              AB351620     1    26    26
browser |    26  100.0%          6     -  11766410  11766435              AB351620     1    26    26
browser |    26  100.0%          6     +  12511613  12511638              AB351620     1    26    26
browser |    26  100.0%          6     -  12770423  12770448              AB351620     1    26    26
browser |    26  100.0%          6     +  24589553  24589578              AB351620     1    26    26
browser |    26  100.0%          6     -  24652645  24652670              AB351620     1    26    26
browser |    26  100.0%          6     -  29624878  29624903              AB351620     1    26    26
browser |    26  100.0%          6     -  32807219  32807244              AB351620     1    26    26
browser |    26  100.0%          6     -  34814569  34814594              AB351620     1    26    26
browser |    26  100.0%          6     +  41985888  41985913              AB351620     1    26    26
browser |    26  100.0%          6     -  42830451  42830476              AB351620     1    26    26
browser |    25  100.0%          6     -  42948578  42948602              AB351620     2    26    26
browser |    26  100.0%          6     -  66283653  66283678              AB351620     1    26    26
browser |    26  100.0%          6     +  69724156  69724181              AB351620     1    26    26
browser |    26  100.0%          6     +  76544154  76544179              AB351620     1    26    26
browser |    26  100.0%          6     +  76556717  76556742              AB351620     1    26    26
browser |    26  100.0%          6     -  80661453  80661478              AB351620     1    26    26
browser |    26  100.0%          6     -  89598149  89598174              AB351620     1    26    26
browser |    26  100.0%          6     +  90231026  90231051              AB351620     1    26    26
browser |    26  100.0%          6     +  94414998  94415023              AB351620     1    26    26
browser |    26  100.0%          6     -  95398031  95398056              AB351620     1    26    26
browser |    26  100.0%          6     - 103346623 103346648              AB351620     1    26    26
browser |    26  100.0%          6     - 104172933 104172958              AB351620     1    26    26
browser |    26  100.0%          6     - 104435701 104435726              AB351620     1    26    26
browser |    24  100.0%          6     - 106855203 106855226              AB351620     3    26    26
browser |    26  100.0%          6     - 107135485 107135510              AB351620     1    26    26
browser |    26  100.0%          6     + 117725273 117725298              AB351620     1    26    26
browser |    25  100.0%          6     + 130494464 130494488              AB351620     1    25    26
browser |    26  100.0%          6     + 130911961 130911986              AB351620     1    26    26
browser |    26  100.0%          6     + 132921546 132921571              AB351620     1    26    26
browser |    26  100.0%          6     - 141517198 141517223              AB351620     1    26    26
browser |    26  100.0%          6     + 142230064 142230089              AB351620     1    26    26
browser |    25  100.0%          6     - 147896973 147896997              AB351620     2    26    26
browser |    26  100.0%          6     + 148223497 148223522              AB351620     1    26    26
browser |    24  100.0%          7     +   5987545   5987568              AB351620     3    26    26
browser |    26  100.0%          7     +  14093138  14093163              AB351620     1    26    26
browser |    26  100.0%          7     -  14189091  14189116              AB351620     1    26    26
browser |    26  100.0%          7     -  14258158  14258183              AB351620     1    26    26
browser |    26  100.0%          7     +  25640293  25640318              AB351620     1    26    26
browser |    26  100.0%          7     +  46100876  46100901              AB351620     1    26    26
browser |    26  100.0%          7     +  50543137  50543162              AB351620     1    26    26
browser |    24  100.0%          7     -  52965486  52965509              AB351620     1    24    26
browser |    26  100.0%          7     -  56097059  56097084              AB351620     1    26    26
browser |    26  100.0%          7     +  57543354  57543379              AB351620     1    26    26
browser |    26  100.0%          7     -  58565055  58565080              AB351620     1    26    26
browser |    26  100.0%          7     -  61406078  61406103              AB351620     1    26    26
browser |    26  100.0%          7     -  72269821  72269846              AB351620     1    26    26
browser |    26  100.0%          7     -  73762738  73762763              AB351620     1    26    26
browser |    26  100.0%          7     +  82932152  82932177              AB351620     1    26    26
browser |    26  100.0%          7     +  87504437  87504462              AB351620     1    26    26
browser |    26  100.0%          7     - 123525908 123525933              AB351620     1    26    26
browser |    26  100.0%          7     - 124631485 124631510              AB351620     1    26    26
browser |    26  100.0%          7     + 134134259 134134284              AB351620     1    26    26
browser |    26  100.0%          8     -   4538276   4538301              AB351620     1    26    26
browser |    26  100.0%          8     -   4844005   4844030              AB351620     1    26    26
browser |    26  100.0%          8     -  32651856  32651881              AB351620     1    26    26
browser |    26  100.0%          8     +  35714881  35714906              AB351620     1    26    26
browser |    26  100.0%          8     -  47307418  47307443              AB351620     1    26    26
browser |    26  100.0%          8     +  52677214  52677239              AB351620     1    26    26
browser |    26  100.0%          8     -  64200265  64200290              AB351620     1    26    26
browser |    26  100.0%          8     -  66591438  66591463              AB351620     1    26    26
browser |    26  100.0%          8     +  67737129  67737154              AB351620     1    26    26
browser |    26  100.0%          8     +  74565156  74565181              AB351620     1    26    26
browser |    26  100.0%          8     -  80945675  80945700              AB351620     1    26    26
browser |    26  100.0%          8     +  81669992  81670017              AB351620     1    26    26
browser |    26  100.0%          8     - 100380003 100380028              AB351620     1    26    26
browser |    26  100.0%          9     -   3527981   3528006              AB351620     1    26    26
browser |    26  100.0%          9     -   4583360   4583385              AB351620     1    26    26
browser |    26  100.0%          9     +   8421317   8421342              AB351620     1    26    26
browser |    26  100.0%          9     +  13633233  13633258              AB351620     1    26    26
browser |    26  100.0%          9     +  18419392  18419417              AB351620     1    26    26
browser |    24  100.0%          9     -  26253586  26253609              AB351620     3    26    26
browser |    26  100.0%          9     +  26565538  26565563              AB351620     1    26    26
browser |    26  100.0%          9     +  30729539  30729564              AB351620     1    26    26
browser |    26  100.0%          9     +  39973611  39973636              AB351620     1    26    26
browser |    24  100.0%          9     +  44842714  44842737              AB351620     3    26    26
browser |    26  100.0%          9     +  66308671  66308696              AB351620     1    26    26
browser |    26  100.0%          9     -  74933818  74933843              AB351620     1    26    26
browser |    26  100.0%          9     -  76649881  76649906              AB351620     1    26    26
browser |    25  100.0%          9     -  82526984  82527008              AB351620     1    25    26
browser |    25  100.0%          9     -  85501341  85501365              AB351620     1    25    26
browser |    26  100.0%          9     -  86791956  86791981              AB351620     1    26    26
browser |    26  100.0%          9     +  87100946  87100971              AB351620     1    26    26
browser |    25  100.0%          9     -  93035496  93035520              AB351620     1    25    26
browser |    26  100.0%          9     -  97867744  97867769              AB351620     1    26    26
browser |    26  100.0%          9     + 100212177 100212202              AB351620     1    26    26
browser |    26  100.0%          X     +  16687116  16687141              AB351620     1    26    26
browser |    26  100.0%          X     -  18396863  18396888              AB351620     1    26    26
browser |    26  100.0%          X     +  20050864  20050889              AB351620     1    26    26
browser |    26  100.0%          X     +  22921693  22921718              AB351620     1    26    26
browser |    26  100.0%          X     -  23092013  23092038              AB351620     1    26    26
browser |    26  100.0%          X     +  38254602  38254627              AB351620     1    26    26
browser |    26  100.0%          X     +  38797826  38797851              AB351620     1    26    26
browser |    26  100.0%          X     +  39073937  39073962              AB351620     1    26    26
browser |    26  100.0%          X     -  42449769  42449794              AB351620     1    26    26
browser |    26  100.0%          X     +  46357894  46357919              AB351620     1    26    26
browser |    26  100.0%          X     +  48230907  48230932              AB351620     1    26    26
browser |    26  100.0%          X     -  49153431  49153456              AB351620     1    26    26
browser |    24  100.0%          X     -  56922150  56922173              AB351620     3    26    26
browser |    26  100.0%          X     -  66350301  66350326              AB351620     1    26    26
browser |    26  100.0%          X     -  68334710  68334735              AB351620     1    26    26
browser |    25  100.0%          X     -  68948386  68948410              AB351620     2    26    26
browser |    25  100.0%          X     +  83731679  83731703              AB351620     1    25    26
browser |    26  100.0%          X     -  85818121  85818146              AB351620     1    26    26
browser |    26  100.0%          X     -  86968215  86968240              AB351620     1    26    26
browser |    26  100.0%          X     -  87479583  87479608              AB351620     1    26    26
browser |    24  100.0%          X     -  92035231  92035254              AB351620     1    24    26
browser |    26  100.0%          X     + 106962853 106962878              AB351620     1    26    26
browser |    26  100.0%          X     + 110046751 110046776              AB351620     1    26    26
browser |    26  100.0%          X     + 113831399 113831424              AB351620     1    26    26
browser |    26  100.0%          X     + 114185257 114185282              AB351620     1    26    26
browser |    26  100.0%          X     + 115606828 115606853              AB351620     1    26    26
browser |    26  100.0%          X     - 116594571 116594596              AB351620     1    26    26
browser |    26  100.0%          X     - 116858616 116858641              AB351620     1    26    26
browser |    26  100.0%          X     + 120029847 120029872              AB351620     1    26    26
browser |    26  100.0%          X     + 121857893 121857918              AB351620     1    26    26
browser |    26  100.0%          X     + 125364292 125364317              AB351620     1    26    26
browser |    26  100.0%          X     - 125777498 125777523              AB351620     1    26    26
browser |    26  100.0%          X     - 130285991 130286016              AB351620     1    26    26
browser |    26  100.0%          X     + 131810513 131810538              AB351620     1    26    26
browser |    26  100.0%          X     - 132080308 132080333              AB351620     1    26    26
browser |    26  100.0%          X     - 134121963 134121988              AB351620     1    26    26
browser |    26  100.0%          X     + 140908829 140908854              AB351620     1    26    26
browser |    24  100.0%          X     - 144049775 144049798              AB351620     1    24    26
browser |    26  100.0%          X     + 145079534 145079559              AB351620     1    26    26
browser |    26  100.0%          X     - 145457409 145457434              AB351620     1    26    26
browser |    26  100.0%          X     - 150482319 150482344              AB351620     1    26    26
browser |    26  100.0%          X     + 154082349 154082374              AB351620     1    26    26
browser |    26  100.0%          X     + 154300879 154300904              AB351620     1    26    26
browser |    26  100.0%          X     - 154517456 154517481              AB351620     1    26    26
browser |    26  100.0%          X     - 155749905 155749930              AB351620     1    26    26
browser |    26  100.0%          X     + 157036003 157036028              AB351620     1    26    26
browser |    26  100.0%          X     - 165430489 165430514              AB351620     1    26    26
browser |    26  100.0%          Y     -   1790729   1790754              AB351620     1    26    26

View details of parts of alignment within browser window
.
View table schema

Go to Mouse mRNAs track controls

Data last updated at UCSC: 2020-08-18

Description

The mRNA track shows alignments between mouse mRNAs in GenBank and the genome.

Display Conventions and Configuration

This track follows the display conventions for PSL alignment tracks. In dense display mode, the items that are more darkly shaded indicate matches of better quality.

The description page for this track has a filter that can be used to change the display mode, alter the color, and include/exclude a subset of items within the track. This may be helpful when many items are shown in the track display, especially when only some are relevant to the current task.

To use the filter:

  1. Type a term in one or more of the text boxes to filter the mRNA display. For example, to apply the filter to all mRNAs expressed in a specific organ, type the name of the organ in the tissue box. To view the list of valid terms for each text box, consult the table in the Table Browser that corresponds to the factor on which you wish to filter. For example, the "tissue" table contains all the types of tissues that can be entered into the tissue text box. Multiple terms may be entered at once, separated by a space. Wildcards may also be used in the filter.
  2. If filtering on more than one value, choose the desired combination logic. If "and" is selected, only mRNAs that match all filter criteria will be highlighted. If "or" is selected, mRNAs that match any one of the filter criteria will be highlighted.
  3. Choose the color or display characteristic that should be used to highlight or include/exclude the filtered items. If "exclude" is chosen, the browser will not display mRNAs that match the filter criteria. If "include" is selected, the browser will display only those mRNAs that match the filter criteria.

This track may also be configured to display codon coloring, a feature that allows the user to quickly compare mRNAs against the genomic sequence. For more information about this option, go to the Codon and Base Coloring for Alignment Tracks page. Several types of alignment gap may also be colored; for more information, go to the Alignment Insertion/Deletion Display Options page.

Methods

GenBank mouse mRNAs were aligned against the genome using the blat program. When a single mRNA aligned in multiple places, the alignment having the highest base identity was found. Only alignments having a base identity level within 0.5% of the best and at least 96% base identity with the genomic sequence were kept.

Credits

The mRNA track was produced at UCSC from mRNA sequence data submitted to the international public sequence databases by scientists worldwide.

References

Benson DA, Cavanaugh M, Clark K, Karsch-Mizrachi I, Lipman DJ, Ostell J, Sayers EW. GenBank. Nucleic Acids Res. 2013 Jan;41(Database issue):D36-42. PMID: 23193287; PMC: PMC3531190

Benson DA, Karsch-Mizrachi I, Lipman DJ, Ostell J, Wheeler DL. GenBank: update. Nucleic Acids Res. 2004 Jan 1;32(Database issue):D23-6. PMID: 14681350; PMC: PMC308779

Kent WJ. BLAT - the BLAST-like alignment tool. Genome Res. 2002 Apr;12(4):656-64. PMID: 11932250; PMC: PMC187518