DQ718688
 

Information on mRNA DQ718688

Description: Mus musculus piRNA piR-134010, complete sequence.
Gene: n/a
Product: n/a
Author: Lau,N.C., Seto,A.G., Kim,J., Kuramochi-Miyagawa,S., Nakano,T., Bartel,D.P. and Kingston,R.E.
Organism: Mus musculus
Tissue: n/a
Development stage: n/a
Cell line: n/a
Sex: n/a
Library: n/a
Clone: n/a
CDS: n/a
Date: 2006-06-08
Version: 1
mRNA sequence: DQ718688
Position: chr12:56797716-56797744

mRNA/Genomic Alignments

The alignment you clicked on is first in the table below.
BROWSER | SIZE IDENTITY CHROMOSOME  STRAND    START     END              QUERY      START  END  TOTAL
-----------------------------------------------------------------------------------------------------
browser |    29  100.0%         12     -  56797716  56797744              DQ718688     1    29    29
browser |    29  100.0%          1     -   5880401   5880429              DQ718688     1    29    29
browser |    29  100.0%          1     +   8065190   8065218              DQ718688     1    29    29
browser |    29  100.0%          1     +  18028295  18028323              DQ718688     1    29    29
browser |    29  100.0%          1     +  18588325  18588353              DQ718688     1    29    29
browser |    29  100.0%          1     +  23341466  23341494              DQ718688     1    29    29
browser |    29  100.0%          1     -  26392190  26392218              DQ718688     1    29    29
browser |    29  100.0%          1     +  26454317  26454345              DQ718688     1    29    29
browser |    29  100.0%          1     +  29695189  29695217              DQ718688     1    29    29
browser |    29  100.0%          1     +  34387798  34387826              DQ718688     1    29    29
browser |    29  100.0%          1     +  45774547  45774575              DQ718688     1    29    29
browser |    29  100.0%          1     +  48129505  48129533              DQ718688     1    29    29
browser |    29  100.0%          1     -  48401191  48401219              DQ718688     1    29    29
browser |    29  100.0%          1     -  58856664  58856692              DQ718688     1    29    29
browser |    29  100.0%          1     -  60769850  60769878              DQ718688     1    29    29
browser |    29  100.0%          1     +  64423501  64423529              DQ718688     1    29    29
browser |    29  100.0%          1     -  65005312  65005340              DQ718688     1    29    29
browser |    29  100.0%          1     -  66062619  66062647              DQ718688     1    29    29
browser |    29  100.0%          1     -  76753265  76753293              DQ718688     1    29    29
browser |    29  100.0%          1     -  81547725  81547753              DQ718688     1    29    29
browser |    29  100.0%          1     -  87067207  87067235              DQ718688     1    29    29
browser |    29  100.0%          1     - 108342432 108342460              DQ718688     1    29    29
browser |    29  100.0%          1     + 112858451 112858479              DQ718688     1    29    29
browser |    29  100.0%          1     + 114114280 114114308              DQ718688     1    29    29
browser |    27  100.0%          1     - 118079959 118079985              DQ718688     3    29    29
browser |    29  100.0%          1     - 120502501 120502529              DQ718688     1    29    29
browser |    29  100.0%          1     - 127491843 127491871              DQ718688     1    29    29
browser |    29  100.0%          1     + 130463296 130463324              DQ718688     1    29    29
browser |    29  100.0%          1     + 139653844 139653872              DQ718688     1    29    29
browser |    29  100.0%          1     + 140964390 140964418              DQ718688     1    29    29
browser |    29  100.0%          1     - 141300530 141300558              DQ718688     1    29    29
browser |    29  100.0%          1     - 142516544 142516572              DQ718688     1    29    29
browser |    29  100.0%          1     - 148338321 148338349              DQ718688     1    29    29
browser |    29  100.0%          1     - 149387881 149387909              DQ718688     1    29    29
browser |    29  100.0%          1     - 160647368 160647396              DQ718688     1    29    29
browser |    29  100.0%          1     + 162669362 162669390              DQ718688     1    29    29
browser |    29  100.0%          1     + 169944596 169944624              DQ718688     1    29    29
browser |    29  100.0%          1     + 177886861 177886889              DQ718688     1    29    29
browser |    29  100.0%          1     + 191840943 191840971              DQ718688     1    29    29
browser |    29  100.0%          1     + 195003898 195003926              DQ718688     1    29    29
browser |    29  100.0%         10     +  11571266  11571294              DQ718688     1    29    29
browser |    29  100.0%         10     -  23753058  23753086              DQ718688     1    29    29
browser |    29  100.0%         10     +  25845559  25845587              DQ718688     1    29    29
browser |    29  100.0%         10     +  33764205  33764233              DQ718688     1    29    29
browser |    29  100.0%         10     -  55595569  55595597              DQ718688     1    29    29
browser |    26  100.0%         10     -  65790538  65790563              DQ718688     4    29    29
browser |    29  100.0%         10     -  66564079  66564107              DQ718688     1    29    29
browser |    29  100.0%         10     +  70628500  70628528              DQ718688     1    29    29
browser |    29  100.0%         10     +  71528497  71528525              DQ718688     1    29    29
browser |    29  100.0%         10     +  77787851  77787879              DQ718688     1    29    29
browser |    29  100.0%         10     +  77857462  77857490              DQ718688     1    29    29
browser |    29  100.0%         10     -  78657628  78657656              DQ718688     1    29    29
browser |    29  100.0%         10     +  84581810  84581838              DQ718688     1    29    29
browser |    29  100.0%         10     +  85552305  85552333              DQ718688     1    29    29
browser |    29  100.0%         10     +  88488092  88488120              DQ718688     1    29    29
browser |    29  100.0%         10     -  90164335  90164363              DQ718688     1    29    29
browser |    29  100.0%         10     -  96034232  96034260              DQ718688     1    29    29
browser |    29  100.0%         10     -  97164151  97164179              DQ718688     1    29    29
browser |    29  100.0%         10     -  99385924  99385952              DQ718688     1    29    29
browser |    29  100.0%         10     + 104392458 104392486              DQ718688     1    29    29
browser |    29  100.0%         10     - 104659271 104659299              DQ718688     1    29    29
browser |    29  100.0%         10     + 117907798 117907826              DQ718688     1    29    29
browser |    29  100.0%         10     - 122674491 122674519              DQ718688     1    29    29
browser |    29  100.0%         10     + 124442915 124442943              DQ718688     1    29    29
browser |    29  100.0%         10     - 129230530 129230558              DQ718688     1    29    29
browser |    29  100.0%         10     - 130400739 130400767              DQ718688     1    29    29
browser |    29  100.0%         11     -   6097332   6097360              DQ718688     1    29    29
browser |    29  100.0%         11     -  12461209  12461237              DQ718688     1    29    29
browser |    29  100.0%         11     +  12513181  12513209              DQ718688     1    29    29
browser |    29  100.0%         11     -  12907936  12907964              DQ718688     1    29    29
browser |    29  100.0%         11     -  19519265  19519293              DQ718688     1    29    29
browser |    29  100.0%         11     -  23174423  23174451              DQ718688     1    29    29
browser |    29  100.0%         11     +  28048554  28048582              DQ718688     1    29    29
browser |    29  100.0%         11     -  54473240  54473268              DQ718688     1    29    29
browser |    26  100.0%         11     +  61312525  61312550              DQ718688     4    29    29
browser |    29  100.0%         11     +  64684237  64684265              DQ718688     1    29    29
browser |    29  100.0%         11     -  65348450  65348478              DQ718688     1    29    29
browser |    29  100.0%         11     +  74432238  74432266              DQ718688     1    29    29
browser |    29  100.0%         11     +  74776481  74776509              DQ718688     1    29    29
browser |    29  100.0%         11     -  88807623  88807651              DQ718688     1    29    29
browser |    29  100.0%         11     -  90724367  90724395              DQ718688     1    29    29
browser |    29  100.0%         11     + 100555004 100555032              DQ718688     1    29    29
browser |    26  100.0%         11     - 105923025 105923050              DQ718688     4    29    29
browser |    29  100.0%         11     - 108293877 108293905              DQ718688     1    29    29
browser |    29  100.0%         11     + 113804280 113804308              DQ718688     1    29    29
browser |    26  100.0%         11     + 116281534 116281559              DQ718688     4    29    29
browser |    29  100.0%         11     + 116677647 116677675              DQ718688     1    29    29
browser |    29  100.0%         12     +   3053636   3053664              DQ718688     1    29    29
browser |    29  100.0%         12     -   3386649   3386677              DQ718688     1    29    29
browser |    29  100.0%         12     +   8454581   8454609              DQ718688     1    29    29
browser |    27  100.0%         12     +  19759737  19759763              DQ718688     3    29    29
browser |    29  100.0%         12     -  44817767  44817795              DQ718688     1    29    29
browser |    29  100.0%         12     -  61339182  61339210              DQ718688     1    29    29
browser |    29  100.0%         12     +  62582874  62582902              DQ718688     1    29    29
browser |    29  100.0%         12     -  65079784  65079812              DQ718688     1    29    29
browser |    29  100.0%         12     +  65681308  65681336              DQ718688     1    29    29
browser |    29  100.0%         12     +  68793305  68793333              DQ718688     1    29    29
browser |    29  100.0%         12     -  70713775  70713803              DQ718688     1    29    29
browser |    29  100.0%         12     -  79614454  79614482              DQ718688     1    29    29
browser |    29  100.0%         12     -  82511781  82511809              DQ718688     1    29    29
browser |    29  100.0%         12     -  85453636  85453664              DQ718688     1    29    29
browser |    29  100.0%         12     +  93477586  93477614              DQ718688     1    29    29
browser |    26  100.0%         12     -  94009123  94009148              DQ718688     4    29    29
browser |    29  100.0%         12     - 108049478 108049506              DQ718688     1    29    29
browser |    29  100.0%         12     + 114598298 114598326              DQ718688     1    29    29
browser |    29  100.0%         13     -   4953576   4953604              DQ718688     1    29    29
browser |    29  100.0%         13     -   8523594   8523622              DQ718688     1    29    29
browser |    29  100.0%         13     +  15607402  15607430              DQ718688     1    29    29
browser |    29  100.0%         13     +  26552390  26552418              DQ718688     1    29    29
browser |    29  100.0%         13     +  30555367  30555395              DQ718688     1    29    29
browser |    29  100.0%         13     -  31423173  31423201              DQ718688     1    29    29
browser |    29  100.0%         13     +  43432290  43432318              DQ718688     1    29    29
browser |    29  100.0%         13     +  44419084  44419112              DQ718688     1    29    29
browser |    29  100.0%         13     -  63310237  63310265              DQ718688     1    29    29
browser |    29  100.0%         13     +  79712889  79712917              DQ718688     1    29    29
browser |    26  100.0%         13     +  86922159  86922184              DQ718688     4    29    29
browser |    29  100.0%         13     -  87500960  87500988              DQ718688     1    29    29
browser |    29  100.0%         13     +  87705657  87705685              DQ718688     1    29    29
browser |    29  100.0%         13     +  94873300  94873328              DQ718688     1    29    29
browser |    26  100.0%         13     +  97985840  97985865              DQ718688     4    29    29
browser |    29  100.0%         13     +  98220723  98220751              DQ718688     1    29    29
browser |    26  100.0%         13     - 100729408 100729433              DQ718688     4    29    29
browser |    29  100.0%         13     + 111205704 111205732              DQ718688     1    29    29
browser |    29  100.0%         13     + 111637611 111637639              DQ718688     1    29    29
browser |    29  100.0%         13     + 113410747 113410775              DQ718688     1    29    29
browser |    29  100.0%         13     - 114762700 114762728              DQ718688     1    29    29
browser |    26  100.0%         13     + 116027065 116027090              DQ718688     4    29    29
browser |    29  100.0%         13     - 116720406 116720434              DQ718688     1    29    29
browser |    29  100.0%         13     - 119270682 119270710              DQ718688     1    29    29
browser |    29  100.0%         14     +   3457965   3457993              DQ718688     1    29    29
browser |    29  100.0%         14     -   6650984   6651012              DQ718688     1    29    29
browser |    29  100.0%         14     +  35921940  35921968              DQ718688     1    29    29
browser |    26  100.0%         14     -  36956976  36957001              DQ718688     4    29    29
browser |    29  100.0%         14     -  42141867  42141895              DQ718688     1    29    29
browser |    29  100.0%         14     -  53001185  53001213              DQ718688     1    29    29
browser |    29  100.0%         14     -  63885644  63885672              DQ718688     1    29    29
browser |    29  100.0%         14     -  64704725  64704753              DQ718688     1    29    29
browser |    29  100.0%         14     +  66852497  66852525              DQ718688     1    29    29
browser |    29  100.0%         14     +  75663992  75664020              DQ718688     1    29    29
browser |    29  100.0%         14     +  78573518  78573546              DQ718688     1    29    29
browser |    29  100.0%         14     -  79025935  79025963              DQ718688     1    29    29
browser |    29  100.0%         14     -  80035997  80036025              DQ718688     1    29    29
browser |    29  100.0%         14     -  80863925  80863953              DQ718688     1    29    29
browser |    29  100.0%         14     -  85098416  85098444              DQ718688     1    29    29
browser |    29  100.0%         14     +  86829188  86829216              DQ718688     1    29    29
browser |    29  100.0%         14     -  88276987  88277015              DQ718688     1    29    29
browser |    29  100.0%         14     +  90533419  90533447              DQ718688     1    29    29
browser |    27  100.0%         14     -  92065177  92065203              DQ718688     3    29    29
browser |    29  100.0%         14     +  96522581  96522609              DQ718688     1    29    29
browser |    29  100.0%         14     + 100487291 100487319              DQ718688     1    29    29
browser |    29  100.0%         14     - 104348102 104348130              DQ718688     1    29    29
browser |    29  100.0%         14     + 108408265 108408293              DQ718688     1    29    29
browser |    29  100.0%         14     - 112576072 112576100              DQ718688     1    29    29
browser |    29  100.0%         14     - 112871015 112871043              DQ718688     1    29    29
browser |    29  100.0%         14     + 113257242 113257270              DQ718688     1    29    29
browser |    29  100.0%         14     + 113526819 113526847              DQ718688     1    29    29
browser |    29  100.0%         14     + 114744550 114744578              DQ718688     1    29    29
browser |    29  100.0%         14     + 117417641 117417669              DQ718688     1    29    29
browser |    29  100.0%         14     - 118099437 118099465              DQ718688     1    29    29
browser |    29  100.0%         14     - 120199416 120199444              DQ718688     1    29    29
browser |    26  100.0%         15     -  12061926  12061951              DQ718688     4    29    29
browser |    27  100.0%         15     +  17573907  17573933              DQ718688     3    29    29
browser |    29  100.0%         15     -  20976857  20976885              DQ718688     1    29    29
browser |    29  100.0%         15     -  27292078  27292106              DQ718688     1    29    29
browser |    29  100.0%         15     -  27388931  27388959              DQ718688     1    29    29
browser |    29  100.0%         15     +  38480306  38480334              DQ718688     1    29    29
browser |    26  100.0%         15     +  39037715  39037740              DQ718688     4    29    29
browser |    29  100.0%         15     +  43195346  43195374              DQ718688     1    29    29
browser |    29  100.0%         15     +  47221253  47221281              DQ718688     1    29    29
browser |    29  100.0%         15     +  56040548  56040576              DQ718688     1    29    29
browser |    29  100.0%         15     -  74238445  74238473              DQ718688     1    29    29
browser |    29  100.0%         15     -  75083336  75083364              DQ718688     1    29    29
browser |    29  100.0%         15     -  77785244  77785272              DQ718688     1    29    29
browser |    29  100.0%         15     -  82480815  82480843              DQ718688     1    29    29
browser |    29  100.0%         15     -  86200408  86200436              DQ718688     1    29    29
browser |    29  100.0%         15     -  90526510  90526538              DQ718688     1    29    29
browser |    29  100.0%         15     -  92626537  92626565              DQ718688     1    29    29
browser |    29  100.0%         15     +  96877238  96877266              DQ718688     1    29    29
browser |    29  100.0%         15     -  97453944  97453972              DQ718688     1    29    29
browser |    29  100.0%         16     -   4567091   4567119              DQ718688     1    29    29
browser |    29  100.0%         16     -   7857716   7857744              DQ718688     1    29    29
browser |    29  100.0%         16     +  11499283  11499311              DQ718688     1    29    29
browser |    29  100.0%         16     +  12795478  12795506              DQ718688     1    29    29
browser |    29  100.0%         16     -  12923448  12923476              DQ718688     1    29    29
browser |    29  100.0%         16     -  19861161  19861189              DQ718688     1    29    29
browser |    29  100.0%         16     -  20397454  20397482              DQ718688     1    29    29
browser |    29  100.0%         16     +  32399336  32399364              DQ718688     1    29    29
browser |    29  100.0%         16     -  33671584  33671612              DQ718688     1    29    29
browser |    29  100.0%         16     -  36119241  36119269              DQ718688     1    29    29
browser |    29  100.0%         16     -  38540554  38540582              DQ718688     1    29    29
browser |    29  100.0%         16     +  50731455  50731483              DQ718688     1    29    29
browser |    29  100.0%         16     -  52837052  52837080              DQ718688     1    29    29
browser |    29  100.0%         16     +  53393079  53393107              DQ718688     1    29    29
browser |    29  100.0%         16     -  55500605  55500633              DQ718688     1    29    29
browser |    29  100.0%         16     -  58474581  58474609              DQ718688     1    29    29
browser |    29  100.0%         16     -  58948107  58948135              DQ718688     1    29    29
browser |    29  100.0%         16     -  60751944  60751972              DQ718688     1    29    29
browser |    29  100.0%         16     +  66040176  66040204              DQ718688     1    29    29
browser |    29  100.0%         16     +  71485127  71485155              DQ718688     1    29    29
browser |    29  100.0%         16     -  74574587  74574615              DQ718688     1    29    29
browser |    29  100.0%         16     -  78244726  78244754              DQ718688     1    29    29
browser |    29  100.0%         16     -  79171432  79171460              DQ718688     1    29    29
browser |    29  100.0%         16     -  80562600  80562628              DQ718688     1    29    29
browser |    29  100.0%         16     +  80870010  80870038              DQ718688     1    29    29
browser |    29  100.0%         16     -  82038703  82038731              DQ718688     1    29    29
browser |    29  100.0%         16     +  82381642  82381670              DQ718688     1    29    29
browser |    26  100.0%         16     +  83158912  83158937              DQ718688     4    29    29
browser |    29  100.0%         16     -  88593371  88593399              DQ718688     1    29    29
browser |    26  100.0%         16     +  89241114  89241139              DQ718688     4    29    29
browser |    29  100.0%         16     -  89859067  89859095              DQ718688     1    29    29
browser |    26  100.0%         16     -  97577579  97577604              DQ718688     4    29    29
browser |    29  100.0%         17     -   6399057   6399085              DQ718688     1    29    29
browser |    29  100.0%         17     +  13462494  13462522              DQ718688     1    29    29
browser |    29  100.0%         17     +  13635068  13635096              DQ718688     1    29    29
browser |    29  100.0%         17     +  15086433  15086461              DQ718688     1    29    29
browser |    29  100.0%         17     +  35587556  35587584              DQ718688     1    29    29
browser |    29  100.0%         17     +  36319290  36319318              DQ718688     1    29    29
browser |    29  100.0%         17     -  38852556  38852584              DQ718688     1    29    29
browser |    29  100.0%         17     +  45956882  45956910              DQ718688     1    29    29
browser |    29  100.0%         17     -  54128528  54128556              DQ718688     1    29    29
browser |    29  100.0%         17     -  64055102  64055130              DQ718688     1    29    29
browser |    29  100.0%         17     -  69254471  69254499              DQ718688     1    29    29
browser |    29  100.0%         17     +  69638561  69638589              DQ718688     1    29    29
browser |    29  100.0%         17     -  75071917  75071945              DQ718688     1    29    29
browser |    29  100.0%         17     -  76208366  76208394              DQ718688     1    29    29
browser |    29  100.0%         17     +  76820926  76820954              DQ718688     1    29    29
browser |    29  100.0%         17     -  81469664  81469692              DQ718688     1    29    29
browser |    29  100.0%         17     +  88057811  88057839              DQ718688     1    29    29
browser |    26  100.0%         17     +  90244233  90244258              DQ718688     4    29    29
browser |    29  100.0%         17     -  92143250  92143278              DQ718688     1    29    29
browser |    29  100.0%         17     -  94609607  94609635              DQ718688     1    29    29
browser |    29  100.0%         18     +   8012855   8012883              DQ718688     1    29    29
browser |    29  100.0%         18     -  27137211  27137239              DQ718688     1    29    29
browser |    29  100.0%         18     -  29097283  29097311              DQ718688     1    29    29
browser |    29  100.0%         18     +  52522258  52522286              DQ718688     1    29    29
browser |    29  100.0%         18     -  60665431  60665459              DQ718688     1    29    29
browser |    29  100.0%         18     +  68546599  68546627              DQ718688     1    29    29
browser |    29  100.0%         18     +  71215860  71215888              DQ718688     1    29    29
browser |    29  100.0%         18     +  83190563  83190591              DQ718688     1    29    29
browser |    29  100.0%         18     +  83720040  83720068              DQ718688     1    29    29
browser |    29  100.0%         19     -   3087375   3087403              DQ718688     1    29    29
browser |    29  100.0%         19     +  34109819  34109847              DQ718688     1    29    29
browser |    29  100.0%         19     +  41132484  41132512              DQ718688     1    29    29
browser |    29  100.0%         19     +  52975357  52975385              DQ718688     1    29    29
browser |    29  100.0%          2     +   5690094   5690122              DQ718688     1    29    29
browser |    26  100.0%          2     +   7410197   7410222              DQ718688     4    29    29
browser |    29  100.0%          2     +  24084527  24084555              DQ718688     1    29    29
browser |    26  100.0%          2     -  26227163  26227188              DQ718688     4    29    29
browser |    29  100.0%          2     +  30109758  30109786              DQ718688     1    29    29
browser |    27  100.0%          2     -  36254145  36254171              DQ718688     3    29    29
browser |    26  100.0%          2     -  46468251  46468276              DQ718688     4    29    29
browser |    29  100.0%          2     -  48379346  48379374              DQ718688     1    29    29
browser |    29  100.0%          2     +  66676746  66676774              DQ718688     1    29    29
browser |    26  100.0%          2     -  72104636  72104661              DQ718688     4    29    29
browser |    29  100.0%          2     -  81340907  81340935              DQ718688     1    29    29
browser |    29  100.0%          2     +  82505374  82505402              DQ718688     1    29    29
browser |    29  100.0%          2     +  85526179  85526207              DQ718688     1    29    29
browser |    27  100.0%          2     -  86454228  86454254              DQ718688     3    29    29
browser |    29  100.0%          2     +  90010015  90010043              DQ718688     1    29    29
browser |    29  100.0%          2     -  90197338  90197366              DQ718688     1    29    29
browser |    29  100.0%          2     -  94899066  94899094              DQ718688     1    29    29
browser |    29  100.0%          2     -  96027564  96027592              DQ718688     1    29    29
browser |    29  100.0%          2     -  98630927  98630955              DQ718688     1    29    29
browser |    29  100.0%          2     -  99381534  99381562              DQ718688     1    29    29
browser |    29  100.0%          2     + 100249958 100249986              DQ718688     1    29    29
browser |    29  100.0%          2     + 100977914 100977942              DQ718688     1    29    29
browser |    29  100.0%          2     + 105389487 105389515              DQ718688     1    29    29
browser |    29  100.0%          2     + 116320690 116320718              DQ718688     1    29    29
browser |    29  100.0%          2     + 137878247 137878275              DQ718688     1    29    29
browser |    29  100.0%          2     - 145471135 145471163              DQ718688     1    29    29
browser |    26  100.0%          2     + 151177260 151177285              DQ718688     4    29    29
browser |    26  100.0%          2     + 154197506 154197531              DQ718688     4    29    29
browser |    29  100.0%          2     - 154968846 154968874              DQ718688     1    29    29
browser |    29  100.0%          2     - 160479058 160479086              DQ718688     1    29    29
browser |    29  100.0%          2     + 163801472 163801500              DQ718688     1    29    29
browser |    29  100.0%          2     + 165771635 165771663              DQ718688     1    29    29
browser |    29  100.0%          2     - 166658035 166658063              DQ718688     1    29    29
browser |    29  100.0%          2     + 167251323 167251351              DQ718688     1    29    29
browser |    29  100.0%          2     - 174885201 174885229              DQ718688     1    29    29
browser |    29  100.0%          2     + 176849671 176849699              DQ718688     1    29    29
browser |    29  100.0%          2     - 177300187 177300215              DQ718688     1    29    29
browser |    27  100.0%          3     +   3168622   3168648              DQ718688     3    29    29
browser |    29  100.0%          3     -   4789218   4789246              DQ718688     1    29    29
browser |    29  100.0%          3     +   5584118   5584146              DQ718688     1    29    29
browser |    29  100.0%          3     +  11190446  11190474              DQ718688     1    29    29
browser |    29  100.0%          3     -  11803552  11803580              DQ718688     1    29    29
browser |    29  100.0%          3     -  13890283  13890311              DQ718688     1    29    29
browser |    29  100.0%          3     -  14305808  14305836              DQ718688     1    29    29
browser |    29  100.0%          3     +  26402339  26402367              DQ718688     1    29    29
browser |    29  100.0%          3     -  26631794  26631822              DQ718688     1    29    29
browser |    29  100.0%          3     -  28122733  28122761              DQ718688     1    29    29
browser |    29  100.0%          3     +  31237125  31237153              DQ718688     1    29    29
browser |    29  100.0%          3     -  42780515  42780543              DQ718688     1    29    29
browser |    29  100.0%          3     -  43814582  43814610              DQ718688     1    29    29
browser |    29  100.0%          3     +  46606238  46606266              DQ718688     1    29    29
browser |    29  100.0%          3     +  59279466  59279494              DQ718688     1    29    29
browser |    29  100.0%          3     -  61180811  61180839              DQ718688     1    29    29
browser |    29  100.0%          3     +  68022995  68023023              DQ718688     1    29    29
browser |    29  100.0%          3     -  69528840  69528868              DQ718688     1    29    29
browser |    29  100.0%          3     -  69551131  69551159              DQ718688     1    29    29
browser |    29  100.0%          3     +  73641802  73641830              DQ718688     1    29    29
browser |    29  100.0%          3     +  74742929  74742957              DQ718688     1    29    29
browser |    29  100.0%          3     -  82393962  82393990              DQ718688     1    29    29
browser |    29  100.0%          3     +  88574948  88574976              DQ718688     1    29    29
browser |    29  100.0%          3     +  99323924  99323952              DQ718688     1    29    29
browser |    29  100.0%          3     + 115704127 115704155              DQ718688     1    29    29
browser |    26  100.0%          3     + 116612575 116612600              DQ718688     4    29    29
browser |    29  100.0%          3     + 135880795 135880823              DQ718688     1    29    29
browser |    29  100.0%          3     + 139827083 139827111              DQ718688     1    29    29
browser |    29  100.0%          3     + 145790787 145790815              DQ718688     1    29    29
browser |    29  100.0%          3     - 155967072 155967100              DQ718688     1    29    29
browser |    29  100.0%          3     - 156509117 156509145              DQ718688     1    29    29
browser |    26  100.0%          3     - 158935467 158935492              DQ718688     4    29    29
browser |    27  100.0%          4     +   3483856   3483882              DQ718688     3    29    29
browser |    29  100.0%          4     -   4889356   4889384              DQ718688     1    29    29
browser |    29  100.0%          4     -   5190460   5190488              DQ718688     1    29    29
browser |    29  100.0%          4     -   7100848   7100876              DQ718688     1    29    29
browser |    29  100.0%          4     +  35378608  35378636              DQ718688     1    29    29
browser |    29  100.0%          4     -  39956839  39956867              DQ718688     1    29    29
browser |    29  100.0%          4     -  40060010  40060038              DQ718688     1    29    29
browser |    29  100.0%          4     +  51896040  51896068              DQ718688     1    29    29
browser |    29  100.0%          4     -  52891012  52891040              DQ718688     1    29    29
browser |    29  100.0%          4     +  60364361  60364389              DQ718688     1    29    29
browser |    29  100.0%          4     +  61686897  61686925              DQ718688     1    29    29
browser |    27  100.0%          4     +  61838066  61838092              DQ718688     3    29    29
browser |    29  100.0%          4     +  62493298  62493326              DQ718688     1    29    29
browser |    29  100.0%          4     +  68035016  68035044              DQ718688     1    29    29
browser |    29  100.0%          4     +  73121712  73121740              DQ718688     1    29    29
browser |    29  100.0%          4     -  74849390  74849418              DQ718688     1    29    29
browser |    29  100.0%          4     -  75540927  75540955              DQ718688     1    29    29
browser |    29  100.0%          4     +  79480400  79480428              DQ718688     1    29    29
browser |    29  100.0%          4     +  89104693  89104721              DQ718688     1    29    29
browser |    29  100.0%          4     +  91861911  91861939              DQ718688     1    29    29
browser |    29  100.0%          4     - 100985157 100985185              DQ718688     1    29    29
browser |    29  100.0%          4     - 102738693 102738721              DQ718688     1    29    29
browser |    29  100.0%          4     - 107524251 107524279              DQ718688     1    29    29
browser |    29  100.0%          4     + 111430311 111430339              DQ718688     1    29    29
browser |    29  100.0%          4     - 118046404 118046432              DQ718688     1    29    29
browser |    29  100.0%          4     - 120799175 120799203              DQ718688     1    29    29
browser |    29  100.0%          4     - 123670395 123670423              DQ718688     1    29    29
browser |    29  100.0%          4     + 135184332 135184360              DQ718688     1    29    29
browser |    29  100.0%          4     + 143372767 143372795              DQ718688     1    29    29
browser |    29  100.0%          4     - 155766916 155766944              DQ718688     1    29    29
browser |    29  100.0%          4     - 156229760 156229788              DQ718688     1    29    29
browser |    26  100.0%          5     +   6235472   6235497              DQ718688     4    29    29
browser |    29  100.0%          5     -  12218173  12218201              DQ718688     1    29    29
browser |    29  100.0%          5     -  16878266  16878294              DQ718688     1    29    29
browser |    29  100.0%          5     +  21306954  21306982              DQ718688     1    29    29
browser |    29  100.0%          5     +  22407429  22407457              DQ718688     1    29    29
browser |    29  100.0%          5     -  41558472  41558500              DQ718688     1    29    29
browser |    29  100.0%          5     -  42442264  42442292              DQ718688     1    29    29
browser |    29  100.0%          5     -  43992017  43992045              DQ718688     1    29    29
browser |    29  100.0%          5     +  45553988  45554016              DQ718688     1    29    29
browser |    29  100.0%          5     +  47099215  47099243              DQ718688     1    29    29
browser |    26  100.0%          5     +  57850000  57850025              DQ718688     4    29    29
browser |    29  100.0%          5     +  59161772  59161800              DQ718688     1    29    29
browser |    29  100.0%          5     -  59282650  59282678              DQ718688     1    29    29
browser |    29  100.0%          5     +  59598185  59598213              DQ718688     1    29    29
browser |    29  100.0%          5     -  60964972  60965000              DQ718688     1    29    29
browser |    29  100.0%          5     +  64189655  64189683              DQ718688     1    29    29
browser |    29  100.0%          5     -  72232850  72232878              DQ718688     1    29    29
browser |    29  100.0%          5     +  81526801  81526829              DQ718688     1    29    29
browser |    29  100.0%          5     -  85630778  85630806              DQ718688     1    29    29
browser |    27  100.0%          5     +  87374000  87374026              DQ718688     3    29    29
browser |    29  100.0%          5     -  89154594  89154622              DQ718688     1    29    29
browser |    29  100.0%          5     -  96637320  96637348              DQ718688     1    29    29
browser |    29  100.0%          5     -  98358427  98358455              DQ718688     1    29    29
browser |    29  100.0%          5     - 105571175 105571203              DQ718688     1    29    29
browser |    29  100.0%          5     - 105875933 105875961              DQ718688     1    29    29
browser |    29  100.0%          5     - 120042359 120042387              DQ718688     1    29    29
browser |    29  100.0%          5     + 127820841 127820869              DQ718688     1    29    29
browser |    29  100.0%          5     - 133982244 133982272              DQ718688     1    29    29
browser |    29  100.0%          5     + 143414401 143414429              DQ718688     1    29    29
browser |    29  100.0%          5     + 145268094 145268122              DQ718688     1    29    29
browser |    29  100.0%          5     - 151380157 151380185              DQ718688     1    29    29
browser |    29  100.0%          5     - 151453961 151453989              DQ718688     1    29    29
browser |    29  100.0%          6     +   3250856   3250884              DQ718688     1    29    29
browser |    29  100.0%          6     +   3697421   3697449              DQ718688     1    29    29
browser |    29  100.0%          6     +   4364340   4364368              DQ718688     1    29    29
browser |    29  100.0%          6     -   8614437   8614465              DQ718688     1    29    29
browser |    26  100.0%          6     +  10690846  10690871              DQ718688     4    29    29
browser |    29  100.0%          6     +  14461213  14461241              DQ718688     1    29    29
browser |    29  100.0%          6     +  18758886  18758914              DQ718688     1    29    29
browser |    26  100.0%          6     -  28928091  28928116              DQ718688     4    29    29
browser |    29  100.0%          6     -  31780257  31780285              DQ718688     1    29    29
browser |    29  100.0%          6     +  33721980  33722008              DQ718688     1    29    29
browser |    29  100.0%          6     +  44669456  44669484              DQ718688     1    29    29
browser |    29  100.0%          6     -  57069551  57069579              DQ718688     1    29    29
browser |    26  100.0%          6     +  59671213  59671238              DQ718688     4    29    29
browser |    29  100.0%          6     -  80633380  80633408              DQ718688     1    29    29
browser |    29  100.0%          6     -  87384915  87384943              DQ718688     1    29    29
browser |    29  100.0%          6     - 109689071 109689099              DQ718688     1    29    29
browser |    29  100.0%          6     - 112687649 112687677              DQ718688     1    29    29
browser |    29  100.0%          6     - 117568101 117568129              DQ718688     1    29    29
browser |    29  100.0%          6     - 120110384 120110412              DQ718688     1    29    29
browser |    29  100.0%          6     + 123655662 123655690              DQ718688     1    29    29
browser |    29  100.0%          6     + 124952283 124952311              DQ718688     1    29    29
browser |    29  100.0%          6     - 139117795 139117823              DQ718688     1    29    29
browser |    29  100.0%          6     - 139775768 139775796              DQ718688     1    29    29
browser |    29  100.0%          6     - 140935785 140935813              DQ718688     1    29    29
browser |    29  100.0%          6     - 143457294 143457322              DQ718688     1    29    29
browser |    29  100.0%          6     + 149172112 149172140              DQ718688     1    29    29
browser |    29  100.0%          7     -   4462356   4462384              DQ718688     1    29    29
browser |    29  100.0%          7     +   8345816   8345844              DQ718688     1    29    29
browser |    29  100.0%          7     -   9084840   9084868              DQ718688     1    29    29
browser |    29  100.0%          7     +  10644543  10644571              DQ718688     1    29    29
browser |    29  100.0%          7     -  12280538  12280566              DQ718688     1    29    29
browser |    29  100.0%          7     +  14708872  14708900              DQ718688     1    29    29
browser |    29  100.0%          7     +  15331037  15331065              DQ718688     1    29    29
browser |    29  100.0%          7     +  30085985  30086013              DQ718688     1    29    29
browser |    29  100.0%          7     +  31885263  31885291              DQ718688     1    29    29
browser |    29  100.0%          7     -  33214453  33214481              DQ718688     1    29    29
browser |    29  100.0%          7     +  72292042  72292070              DQ718688     1    29    29
browser |    29  100.0%          7     -  82921095  82921123              DQ718688     1    29    29
browser |    29  100.0%          7     -  83576836  83576864              DQ718688     1    29    29
browser |    29  100.0%          7     -  85014280  85014308              DQ718688     1    29    29
browser |    27  100.0%          7     +  86321949  86321975              DQ718688     3    29    29
browser |    29  100.0%          7     -  94636648  94636676              DQ718688     1    29    29
browser |    29  100.0%          7     + 108029739 108029767              DQ718688     1    29    29
browser |    29  100.0%          7     + 116937196 116937224              DQ718688     1    29    29
browser |    29  100.0%          7     - 117871477 117871505              DQ718688     1    29    29
browser |    29  100.0%          7     - 119015883 119015911              DQ718688     1    29    29
browser |    29  100.0%          7     + 127219312 127219340              DQ718688     1    29    29
browser |    29  100.0%          7     - 129167129 129167157              DQ718688     1    29    29
browser |    29  100.0%          7     - 129341101 129341129              DQ718688     1    29    29
browser |    29  100.0%          7     + 137244739 137244767              DQ718688     1    29    29
browser |    29  100.0%          7     + 137864867 137864895              DQ718688     1    29    29
browser |    29  100.0%          7     + 139595905 139595933              DQ718688     1    29    29
browser |    29  100.0%          8     +   3389559   3389587              DQ718688     1    29    29
browser |    29  100.0%          8     -   3810791   3810819              DQ718688     1    29    29
browser |    29  100.0%          8     +   7733074   7733102              DQ718688     1    29    29
browser |    29  100.0%          8     -   8369249   8369277              DQ718688     1    29    29
browser |    29  100.0%          8     -  13764345  13764373              DQ718688     1    29    29
browser |    29  100.0%          8     +  13770537  13770565              DQ718688     1    29    29
browser |    29  100.0%          8     +  16947632  16947660              DQ718688     1    29    29
browser |    29  100.0%          8     +  24036941  24036969              DQ718688     1    29    29
browser |    29  100.0%          8     -  26367326  26367354              DQ718688     1    29    29
browser |    29  100.0%          8     +  30006733  30006761              DQ718688     1    29    29
browser |    29  100.0%          8     +  30508131  30508159              DQ718688     1    29    29
browser |    29  100.0%          8     +  50288979  50289007              DQ718688     1    29    29
browser |    29  100.0%          8     +  51051551  51051579              DQ718688     1    29    29
browser |    29  100.0%          8     +  53417287  53417315              DQ718688     1    29    29
browser |    29  100.0%          8     -  54601743  54601771              DQ718688     1    29    29
browser |    29  100.0%          8     +  56001140  56001168              DQ718688     1    29    29
browser |    29  100.0%          8     +  61139715  61139743              DQ718688     1    29    29
browser |    29  100.0%          8     +  61271725  61271753              DQ718688     1    29    29
browser |    29  100.0%          8     -  61457670  61457698              DQ718688     1    29    29
browser |    29  100.0%          8     +  68246870  68246898              DQ718688     1    29    29
browser |    29  100.0%          8     -  75082120  75082148              DQ718688     1    29    29
browser |    29  100.0%          8     -  95347120  95347148              DQ718688     1    29    29
browser |    29  100.0%          8     + 100976664 100976692              DQ718688     1    29    29
browser |    29  100.0%          8     + 102088531 102088559              DQ718688     1    29    29
browser |    29  100.0%          8     - 102691808 102691836              DQ718688     1    29    29
browser |    29  100.0%          8     - 102735450 102735478              DQ718688     1    29    29
browser |    26  100.0%          8     - 105733732 105733757              DQ718688     4    29    29
browser |    29  100.0%          8     + 107207407 107207435              DQ718688     1    29    29
browser |    29  100.0%          8     + 107214209 107214237              DQ718688     1    29    29
browser |    29  100.0%          8     + 116009919 116009947              DQ718688     1    29    29
browser |    29  100.0%          8     + 117624320 117624348              DQ718688     1    29    29
browser |    29  100.0%          8     - 117733182 117733210              DQ718688     1    29    29
browser |    29  100.0%          8     + 119773223 119773251              DQ718688     1    29    29
browser |    26  100.0%          8     + 122133387 122133412              DQ718688     4    29    29
browser |    29  100.0%          8     + 127141614 127141642              DQ718688     1    29    29
browser |    29  100.0%          8     - 129283159 129283187              DQ718688     1    29    29
browser |    29  100.0%          9     -   3465217   3465245              DQ718688     1    29    29
browser |    29  100.0%          9     +  11633933  11633961              DQ718688     1    29    29
browser |    29  100.0%          9     -  33070915  33070943              DQ718688     1    29    29
browser |    29  100.0%          9     -  39808883  39808911              DQ718688     1    29    29
browser |    29  100.0%          9     -  60639315  60639343              DQ718688     1    29    29
browser |    29  100.0%          9     -  84104405  84104433              DQ718688     1    29    29
browser |    29  100.0%          9     -  85950637  85950665              DQ718688     1    29    29
browser |    29  100.0%          9     +  87470984  87471012              DQ718688     1    29    29
browser |    29  100.0%          9     +  88704668  88704696              DQ718688     1    29    29
browser |    29  100.0%          9     -  92535240  92535268              DQ718688     1    29    29
browser |    29  100.0%          9     +  98649814  98649842              DQ718688     1    29    29
browser |    29  100.0%          9     +  99619105  99619133              DQ718688     1    29    29
browser |    29  100.0%          9     - 101174227 101174255              DQ718688     1    29    29
browser |    29  100.0%          9     - 114912956 114912984              DQ718688     1    29    29
browser |    29  100.0%          9     - 119697263 119697291              DQ718688     1    29    29
browser |    29  100.0%          9     - 120468892 120468920              DQ718688     1    29    29
browser |    26  100.0%          9     - 121156217 121156242              DQ718688     4    29    29
browser |    29  100.0%          9     - 121241301 121241329              DQ718688     1    29    29
browser |    26  100.0%          9     - 122236569 122236594              DQ718688     4    29    29
browser |    29  100.0%          9     - 123025738 123025766              DQ718688     1    29    29
browser |    29  100.0%          X     -   3613133   3613161              DQ718688     1    29    29
browser |    29  100.0%          X     -   4365753   4365781              DQ718688     1    29    29
browser |    29  100.0%          X     +   8385373   8385401              DQ718688     1    29    29
browser |    29  100.0%          X     +  18202740  18202768              DQ718688     1    29    29
browser |    29  100.0%          X     -  22436033  22436061              DQ718688     1    29    29
browser |    29  100.0%          X     +  29380406  29380434              DQ718688     1    29    29
browser |    29  100.0%          X     -  29427952  29427980              DQ718688     1    29    29
browser |    29  100.0%          X     -  32650783  32650811              DQ718688     1    29    29
browser |    29  100.0%          X     -  40815826  40815854              DQ718688     1    29    29
browser |    29  100.0%          X     -  53233170  53233198              DQ718688     1    29    29
browser |    29  100.0%          X     -  71921429  71921457              DQ718688     1    29    29
browser |    29  100.0%          X     +  80691641  80691669              DQ718688     1    29    29
browser |    29  100.0%          X     +  88345136  88345164              DQ718688     1    29    29
browser |    29  100.0%          X     +  90861853  90861881              DQ718688     1    29    29
browser |    29  100.0%          X     +  95392694  95392722              DQ718688     1    29    29
browser |    29  100.0%          X     + 112821312 112821340              DQ718688     1    29    29
browser |    29  100.0%          X     - 113209955 113209983              DQ718688     1    29    29
browser |    29  100.0%          X     - 120354620 120354648              DQ718688     1    29    29
browser |    29  100.0%          X     - 120465645 120465673              DQ718688     1    29    29
browser |    29  100.0%          X     - 122476543 122476571              DQ718688     1    29    29
browser |    29  100.0%          X     + 124960885 124960913              DQ718688     1    29    29
browser |    29  100.0%          X     - 126842655 126842683              DQ718688     1    29    29
browser |    29  100.0%          X     + 126859340 126859368              DQ718688     1    29    29
browser |    29  100.0%          X     + 127628090 127628118              DQ718688     1    29    29
browser |    29  100.0%          X     + 144714542 144714570              DQ718688     1    29    29
browser |    29  100.0%          X     + 154562990 154563018              DQ718688     1    29    29
browser |    29  100.0%          X     - 156407523 156407551              DQ718688     1    29    29
browser |    29  100.0%          X     + 159069909 159069937              DQ718688     1    29    29
browser |    29  100.0%          Y     -  31294863  31294891              DQ718688     1    29    29
browser |    29  100.0%          Y     -  33168058  33168086              DQ718688     1    29    29
browser |    29  100.0%          Y     +  40106020  40106048              DQ718688     1    29    29
browser |    29  100.0%          Y     -  42194290  42194318              DQ718688     1    29    29
browser |    26  100.0%          Y     -  42467939  42467964              DQ718688     4    29    29

View details of parts of alignment within browser window
.
View table schema

Go to Mouse mRNAs track controls

Data last updated at UCSC: 2020-08-18

Description

The mRNA track shows alignments between mouse mRNAs in GenBank and the genome.

Display Conventions and Configuration

This track follows the display conventions for PSL alignment tracks. In dense display mode, the items that are more darkly shaded indicate matches of better quality.

The description page for this track has a filter that can be used to change the display mode, alter the color, and include/exclude a subset of items within the track. This may be helpful when many items are shown in the track display, especially when only some are relevant to the current task.

To use the filter:

  1. Type a term in one or more of the text boxes to filter the mRNA display. For example, to apply the filter to all mRNAs expressed in a specific organ, type the name of the organ in the tissue box. To view the list of valid terms for each text box, consult the table in the Table Browser that corresponds to the factor on which you wish to filter. For example, the "tissue" table contains all the types of tissues that can be entered into the tissue text box. Multiple terms may be entered at once, separated by a space. Wildcards may also be used in the filter.
  2. If filtering on more than one value, choose the desired combination logic. If "and" is selected, only mRNAs that match all filter criteria will be highlighted. If "or" is selected, mRNAs that match any one of the filter criteria will be highlighted.
  3. Choose the color or display characteristic that should be used to highlight or include/exclude the filtered items. If "exclude" is chosen, the browser will not display mRNAs that match the filter criteria. If "include" is selected, the browser will display only those mRNAs that match the filter criteria.

This track may also be configured to display codon coloring, a feature that allows the user to quickly compare mRNAs against the genomic sequence. For more information about this option, go to the Codon and Base Coloring for Alignment Tracks page. Several types of alignment gap may also be colored; for more information, go to the Alignment Insertion/Deletion Display Options page.

Methods

GenBank mouse mRNAs were aligned against the genome using the blat program. When a single mRNA aligned in multiple places, the alignment having the highest base identity was found. Only alignments having a base identity level within 0.5% of the best and at least 96% base identity with the genomic sequence were kept.

Credits

The mRNA track was produced at UCSC from mRNA sequence data submitted to the international public sequence databases by scientists worldwide.

References

Benson DA, Cavanaugh M, Clark K, Karsch-Mizrachi I, Lipman DJ, Ostell J, Sayers EW. GenBank. Nucleic Acids Res. 2013 Jan;41(Database issue):D36-42. PMID: 23193287; PMC: PMC3531190

Benson DA, Karsch-Mizrachi I, Lipman DJ, Ostell J, Wheeler DL. GenBank: update. Nucleic Acids Res. 2004 Jan 1;32(Database issue):D23-6. PMID: 14681350; PMC: PMC308779

Kent WJ. BLAT - the BLAST-like alignment tool. Genome Res. 2002 Apr;12(4):656-64. PMID: 11932250; PMC: PMC187518