DQ311519
 

Information on mRNA DQ311519

Description: Mus musculus microRNA miRNA204, complete sequence.
Gene: n/a
Product: n/a
Author: Mineno,J., Okamoto,S., Ando,T., Sato,M., Chono,H., Izu,H., Takayama,M., Asada,K., Mirochnitchenko,O., Inouye,M. and Kato,I.
Organism: Mus musculus
Tissue: n/a
Development stage: n/a
Cell line: n/a
Sex: n/a
Library: n/a
Clone: n/a
CDS: n/a
Date: 2006-10-30
Version: 1
mRNA sequence: DQ311519
Position: chr12:56783753-56783773

mRNA/Genomic Alignments

The alignment you clicked on is first in the table below.
BROWSER | SIZE IDENTITY CHROMOSOME  STRAND    START     END              QUERY      START  END  TOTAL
-----------------------------------------------------------------------------------------------------
browser |    21  100.0%         12     -  56783753  56783773              DQ311519     1    21    22
browser |    20  100.0%          1     -   3358521   3358541              DQ311519     2    22    22
browser |    21  100.0%          1     +   3816540   3816560              DQ311519     1    21    22
browser |    21  100.0%          1     +  14792606  14792626              DQ311519     1    21    22
browser |    21  100.0%          1     -  17422281  17422302              DQ311519     1    22    22
browser |    21  100.0%          1     +  18351409  18351429              DQ311519     1    21    22
browser |    21  100.0%          1     -  20812898  20812918              DQ311519     1    21    22
browser |    21  100.0%          1     -  22016223  22016243              DQ311519     1    21    22
browser |    21  100.0%          1     +  27578056  27578076              DQ311519     1    21    22
browser |    21  100.0%          1     -  43591771  43591791              DQ311519     1    21    22
browser |    21  100.0%          1     +  43690895  43690915              DQ311519     1    21    22
browser |    21  100.0%          1     -  46153051  46153072              DQ311519     1    22    22
browser |    21  100.0%          1     -  54135071  54135092              DQ311519     1    22    22
browser |    21  100.0%          1     -  61759663  61759683              DQ311519     1    21    22
browser |    21  100.0%          1     +  62698286  62698306              DQ311519     1    21    22
browser |    21  100.0%          1     -  68266361  68266382              DQ311519     1    22    22
browser |    21  100.0%          1     +  75236946  75236966              DQ311519     1    21    22
browser |    21  100.0%          1     +  80841266  80841286              DQ311519     1    21    22
browser |    21  100.0%          1     -  83213426  83213446              DQ311519     1    21    22
browser |    21  100.0%          1     +  83659649  83659669              DQ311519     1    21    22
browser |    21  100.0%          1     -  86771923  86771943              DQ311519     1    21    22
browser |    21  100.0%          1     -  89914666  89914686              DQ311519     1    21    22
browser |    21  100.0%          1     -  91554366  91554386              DQ311519     1    21    22
browser |    21  100.0%          1     +  94098959  94098979              DQ311519     1    21    22
browser |    21  100.0%          1     -  95283216  95283237              DQ311519     1    22    22
browser |    21  100.0%          1     +  96237250  96237270              DQ311519     1    21    22
browser |    21  100.0%          1     -  96272821  96272841              DQ311519     1    21    22
browser |    21  100.0%          1     +  97384620  97384640              DQ311519     1    21    22
browser |    21  100.0%          1     + 107674815 107674835              DQ311519     1    21    22
browser |    21  100.0%          1     + 108833066 108833086              DQ311519     1    21    22
browser |    21  100.0%          1     + 128107554 128107574              DQ311519     1    21    22
browser |    21  100.0%          1     + 141205035 141205055              DQ311519     1    21    22
browser |    21  100.0%          1     - 148453968 148453988              DQ311519     1    21    22
browser |    21  100.0%          1     - 155870938 155870958              DQ311519     1    21    22
browser |    21  100.0%          1     - 162768623 162768643              DQ311519     1    21    22
browser |    21  100.0%         10     +  10968085  10968105              DQ311519     1    21    22
browser |    21  100.0%         10     +  16986451  16986471              DQ311519     1    21    22
browser |    21  100.0%         10     -  17817188  17817208              DQ311519     1    21    22
browser |    21  100.0%         10     +  22365285  22365305              DQ311519     1    21    22
browser |    21  100.0%         10     +  27011434  27011454              DQ311519     1    21    22
browser |    21  100.0%         10     +  30923709  30923729              DQ311519     1    21    22
browser |    21  100.0%         10     +  31103011  31103031              DQ311519     1    21    22
browser |    21  100.0%         10     +  34124771  34124791              DQ311519     1    21    22
browser |    21  100.0%         10     +  39395850  39395870              DQ311519     1    21    22
browser |    21  100.0%         10     -  44971731  44971752              DQ311519     1    22    22
browser |    21  100.0%         10     +  49795914  49795934              DQ311519     1    21    22
browser |    21  100.0%         10     -  63550336  63550356              DQ311519     1    21    22
browser |    21  100.0%         10     +  89751380  89751400              DQ311519     1    21    22
browser |    21  100.0%         10     +  91303020  91303040              DQ311519     1    21    22
browser |    21  100.0%         10     +  98342706  98342726              DQ311519     1    21    22
browser |    21  100.0%         10     + 100575151 100575171              DQ311519     1    21    22
browser |    21  100.0%         10     + 104446466 104446486              DQ311519     1    21    22
browser |    20  100.0%         10     - 106403151 106403170              DQ311519     2    21    22
browser |    21  100.0%         10     + 120809654 120809674              DQ311519     1    21    22
browser |    21  100.0%         10     + 128892556 128892576              DQ311519     1    21    22
browser |    21  100.0%         11     +   8296170   8296190              DQ311519     1    21    22
browser |    21  100.0%         11     -  26432381  26432401              DQ311519     1    21    22
browser |    21  100.0%         11     +  32282564  32282584              DQ311519     1    21    22
browser |    21  100.0%         11     +  34144766  34144786              DQ311519     1    21    22
browser |    21  100.0%         11     +  38487296  38487316              DQ311519     1    21    22
browser |    21  100.0%         11     -  42403291  42403312              DQ311519     1    22    22
browser |    20  100.0%         11     -  46157123  46157142              DQ311519     2    21    22
browser |    21  100.0%         11     +  52674331  52674351              DQ311519     1    21    22
browser |    21  100.0%         11     +  61537895  61537915              DQ311519     1    21    22
browser |    21  100.0%         11     -  64958538  64958558              DQ311519     1    21    22
browser |    21  100.0%         11     -  71348806  71348827              DQ311519     1    22    22
browser |    21  100.0%         11     +  76736240  76736260              DQ311519     1    21    22
browser |    21  100.0%         11     -  79854881  79854901              DQ311519     1    21    22
browser |    21  100.0%         11     -  82240281  82240302              DQ311519     1    22    22
browser |    21  100.0%         11     -  89833566  89833587              DQ311519     1    22    22
browser |    21  100.0%         11     +  94099174  94099194              DQ311519     1    21    22
browser |    21  100.0%         11     +  94855776  94855796              DQ311519     1    21    22
browser |    21  100.0%         11     + 105012679 105012699              DQ311519     1    21    22
browser |    21  100.0%         11     + 116648545 116648565              DQ311519     1    21    22
browser |    21  100.0%         12     -   9799956   9799976              DQ311519     1    21    22
browser |    21  100.0%         12     -  15647458  15647478              DQ311519     1    21    22
browser |    21  100.0%         12     -  24853136  24853157              DQ311519     1    22    22
browser |    21  100.0%         12     -  31554623  31554643              DQ311519     1    21    22
browser |    21  100.0%         12     -  34142741  34142761              DQ311519     1    21    22
browser |    21  100.0%         12     -  34456306  34456326              DQ311519     1    21    22
browser |    20  100.0%         12     -  36315688  36315707              DQ311519     2    21    22
browser |    21  100.0%         12     +  36374531  36374551              DQ311519     1    21    22
browser |    21  100.0%         12     -  36493638  36493658              DQ311519     1    21    22
browser |    21  100.0%         12     +  43538701  43538721              DQ311519     1    21    22
browser |    21  100.0%         12     -  51974722  51974742              DQ311519     1    21    22
browser |    21  100.0%         12     +  58904486  58904506              DQ311519     1    21    22
browser |    21  100.0%         12     -  62761746  62761767              DQ311519     1    22    22
browser |    21  100.0%         12     -  66679058  66679078              DQ311519     1    21    22
browser |    21  100.0%         12     -  67625501  67625521              DQ311519     1    21    22
browser |    21  100.0%         12     +  67848386  67848406              DQ311519     1    21    22
browser |    21  100.0%         12     -  74495506  74495526              DQ311519     1    21    22
browser |    21  100.0%         12     -  79109836  79109857              DQ311519     1    22    22
browser |    21  100.0%         12     -  85265211  85265231              DQ311519     1    21    22
browser |    21  100.0%         12     +  86574979  86574999              DQ311519     1    21    22
browser |    21  100.0%         12     - 101138811 101138831              DQ311519     1    21    22
browser |    21  100.0%         12     + 106718625 106718645              DQ311519     1    21    22
browser |    21  100.0%         12     + 117640449 117640469              DQ311519     1    21    22
browser |    21  100.0%         13     +   4205024   4205044              DQ311519     1    21    22
browser |    21  100.0%         13     +  22145525  22145545              DQ311519     1    21    22
browser |    21  100.0%         13     +  24990426  24990446              DQ311519     1    21    22
browser |    21  100.0%         13     +  31655176  31655196              DQ311519     1    21    22
browser |    21  100.0%         13     +  42524279  42524299              DQ311519     1    21    22
browser |    21  100.0%         13     +  45968095  45968115              DQ311519     1    21    22
browser |    21  100.0%         13     +  61100475  61100495              DQ311519     1    21    22
browser |    21  100.0%         13     +  64959574  64959594              DQ311519     1    21    22
browser |    21  100.0%         13     -  67774643  67774663              DQ311519     1    21    22
browser |    21  100.0%         13     +  72207265  72207285              DQ311519     1    21    22
browser |    20  100.0%         13     -  75076924  75076943              DQ311519     1    20    22
browser |    21  100.0%         13     +  75731680  75731700              DQ311519     1    21    22
browser |    21  100.0%         13     -  76198176  76198197              DQ311519     1    22    22
browser |    21  100.0%         13     -  82794691  82794712              DQ311519     1    22    22
browser |    21  100.0%         13     +  85661384  85661404              DQ311519     1    21    22
browser |    21  100.0%         13     -  91098246  91098267              DQ311519     1    22    22
browser |    20  100.0%         13     +  94142551  94142570              DQ311519     2    21    22
browser |    21  100.0%         13     -  94792471  94792492              DQ311519     1    22    22
browser |    21  100.0%         13     - 107759566 107759587              DQ311519     1    22    22
browser |    21  100.0%         13     + 114859191 114859211              DQ311519     1    21    22
browser |    21  100.0%         13     - 118566536 118566557              DQ311519     1    22    22
browser |    21  100.0%         14     -  21766468  21766488              DQ311519     1    21    22
browser |    21  100.0%         14     -  25953151  25953171              DQ311519     1    21    22
browser |    21  100.0%         14     +  55532676  55532696              DQ311519     1    21    22
browser |    20  100.0%         14     -  70919322  70919341              DQ311519     1    20    22
browser |    21  100.0%         14     +  72476875  72476895              DQ311519     1    21    22
browser |    20  100.0%         14     +  77514745  77514764              DQ311519     2    21    22
browser |    21  100.0%         14     -  91168816  91168837              DQ311519     1    22    22
browser |    21  100.0%         14     -  91210216  91210237              DQ311519     1    22    22
browser |    21  100.0%         14     -  92680696  92680716              DQ311519     1    21    22
browser |    21  100.0%         14     +  95486069  95486089              DQ311519     1    21    22
browser |    21  100.0%         14     - 104620671 104620691              DQ311519     1    21    22
browser |    21  100.0%         14     - 120710776 120710796              DQ311519     1    21    22
browser |    21  100.0%         14     + 121992694 121992714              DQ311519     1    21    22
browser |    21  100.0%         15     -  15172671  15172691              DQ311519     1    21    22
browser |    21  100.0%         15     -  15680001  15680022              DQ311519     1    22    22
browser |    21  100.0%         15     -  17627928  17627948              DQ311519     1    21    22
browser |    21  100.0%         15     -  23579526  23579546              DQ311519     1    21    22
browser |    21  100.0%         15     -  24039116  24039137              DQ311519     1    22    22
browser |    21  100.0%         15     -  26802056  26802077              DQ311519     1    22    22
browser |    21  100.0%         15     -  34690306  34690326              DQ311519     1    21    22
browser |    21  100.0%         15     +  35347330  35347350              DQ311519     1    21    22
browser |    21  100.0%         15     +  43817299  43817319              DQ311519     1    21    22
browser |    21  100.0%         15     -  46674788  46674808              DQ311519     1    21    22
browser |    21  100.0%         15     -  55308891  55308911              DQ311519     1    21    22
browser |    21  100.0%         15     -  62057676  62057696              DQ311519     1    21    22
browser |    21  100.0%         15     -  62950411  62950431              DQ311519     1    21    22
browser |    21  100.0%         15     -  80958638  80958658              DQ311519     1    21    22
browser |    21  100.0%         15     -  81942818  81942838              DQ311519     1    21    22
browser |    21  100.0%         15     -  83824868  83824888              DQ311519     1    21    22
browser |    21  100.0%         15     +  87956124  87956144              DQ311519     1    21    22
browser |    21  100.0%         15     +  88515710  88515730              DQ311519     1    21    22
browser |    21  100.0%         16     +   4078764   4078784              DQ311519     1    21    22
browser |    21  100.0%         16     +  12776905  12776925              DQ311519     1    21    22
browser |    21  100.0%         16     +  14983229  14983249              DQ311519     1    21    22
browser |    21  100.0%         16     -  15684781  15684802              DQ311519     1    22    22
browser |    21  100.0%         16     +  17172164  17172184              DQ311519     1    21    22
browser |    21  100.0%         16     +  22301619  22301639              DQ311519     1    21    22
browser |    21  100.0%         16     +  24589356  24589376              DQ311519     1    21    22
browser |    21  100.0%         16     +  26572150  26572170              DQ311519     1    21    22
browser |    21  100.0%         16     -  28418693  28418713              DQ311519     1    21    22
browser |    20  100.0%         16     +  31899277  31899296              DQ311519     2    21    22
browser |    21  100.0%         16     +  32867986  32868006              DQ311519     1    21    22
browser |    21  100.0%         16     +  35691306  35691326              DQ311519     1    21    22
browser |    21  100.0%         16     -  36012213  36012233              DQ311519     1    21    22
browser |    21  100.0%         16     +  38185541  38185561              DQ311519     1    21    22
browser |    21  100.0%         16     -  39392256  39392276              DQ311519     1    21    22
browser |    21  100.0%         16     +  42583671  42583691              DQ311519     1    21    22
browser |    21  100.0%         16     +  43381801  43381821              DQ311519     1    21    22
browser |    21  100.0%         16     -  60014828  60014848              DQ311519     1    21    22
browser |    21  100.0%         16     -  76422216  76422237              DQ311519     1    22    22
browser |    21  100.0%         16     +  77572235  77572255              DQ311519     1    21    22
browser |    21  100.0%         16     +  84009834  84009854              DQ311519     1    21    22
browser |    21  100.0%         16     -  91994686  91994706              DQ311519     1    21    22
browser |    21  100.0%         17     +   5693255   5693275              DQ311519     1    21    22
browser |    21  100.0%         17     -   6694738   6694758              DQ311519     1    21    22
browser |    21  100.0%         17     -   6866331   6866351              DQ311519     1    21    22
browser |    21  100.0%         17     +  12702141  12702161              DQ311519     1    21    22
browser |    21  100.0%         17     +  14079016  14079036              DQ311519     1    21    22
browser |    21  100.0%         17     +  16007410  16007430              DQ311519     1    21    22
browser |    21  100.0%         17     +  16206390  16206410              DQ311519     1    21    22
browser |    21  100.0%         17     -  28072108  28072128              DQ311519     1    21    22
browser |    21  100.0%         17     +  56602369  56602389              DQ311519     1    21    22
browser |    21  100.0%         17     +  59376945  59376965              DQ311519     1    21    22
browser |    21  100.0%         17     -  63604746  63604767              DQ311519     1    22    22
browser |    21  100.0%         17     -  72590548  72590568              DQ311519     1    21    22
browser |    20  100.0%         17     -  77729736  77729756              DQ311519     2    22    22
browser |    21  100.0%         18     -   3943971   3943991              DQ311519     1    21    22
browser |    21  100.0%         18     -   4002598   4002618              DQ311519     1    21    22
browser |    21  100.0%         18     -  16332251  16332271              DQ311519     1    21    22
browser |    21  100.0%         18     -  17323133  17323153              DQ311519     1    21    22
browser |    21  100.0%         18     -  18235056  18235077              DQ311519     1    22    22
browser |    21  100.0%         18     +  20264909  20264929              DQ311519     1    21    22
browser |    21  100.0%         18     +  31654119  31654139              DQ311519     1    21    22
browser |    21  100.0%         18     +  39053939  39053959              DQ311519     1    21    22
browser |    21  100.0%         18     +  40961739  40961759              DQ311519     1    21    22
browser |    21  100.0%         18     -  51598186  51598206              DQ311519     1    21    22
browser |    20  100.0%         18     +  53297120  53297139              DQ311519     2    21    22
browser |    21  100.0%         18     +  56596434  56596454              DQ311519     1    21    22
browser |    21  100.0%         18     +  58542384  58542404              DQ311519     1    21    22
browser |    21  100.0%         18     +  60306239  60306259              DQ311519     1    21    22
browser |    21  100.0%         18     -  71239153  71239173              DQ311519     1    21    22
browser |    21  100.0%         18     -  77799818  77799838              DQ311519     1    21    22
browser |    21  100.0%         18     +  78274024  78274044              DQ311519     1    21    22
browser |    21  100.0%         18     -  88571536  88571556              DQ311519     1    21    22
browser |    21  100.0%         18     +  89664825  89664845              DQ311519     1    21    22
browser |    21  100.0%         19     +   9832759   9832779              DQ311519     1    21    22
browser |    21  100.0%         19     +  10306899  10306919              DQ311519     1    21    22
browser |    21  100.0%         19     +  15298545  15298565              DQ311519     1    21    22
browser |    21  100.0%         19     +  15589541  15589561              DQ311519     1    21    22
browser |    21  100.0%         19     +  16447594  16447614              DQ311519     1    21    22
browser |    21  100.0%         19     -  21849133  21849153              DQ311519     1    21    22
browser |    21  100.0%         19     -  34373051  34373071              DQ311519     1    21    22
browser |    21  100.0%         19     -  38641881  38641901              DQ311519     1    21    22
browser |    21  100.0%         19     +  42036480  42036500              DQ311519     1    21    22
browser |    21  100.0%         19     +  42263474  42263494              DQ311519     1    21    22
browser |    21  100.0%         19     +  43897261  43897281              DQ311519     1    21    22
browser |    21  100.0%         19     -  53108348  53108368              DQ311519     1    21    22
browser |    21  100.0%         19     -  53485036  53485057              DQ311519     1    22    22
browser |    21  100.0%         19     -  54432961  54432981              DQ311519     1    21    22
browser |    21  100.0%          2     +   3206380   3206400              DQ311519     1    21    22
browser |    21  100.0%          2     -  19527591  19527612              DQ311519     1    22    22
browser |    21  100.0%          2     -  22275603  22275623              DQ311519     1    21    22
browser |    21  100.0%          2     +  27291936  27291956              DQ311519     1    21    22
browser |    21  100.0%          2     -  32407816  32407836              DQ311519     1    21    22
browser |    21  100.0%          2     -  33263811  33263831              DQ311519     1    21    22
browser |    21  100.0%          2     -  34401696  34401716              DQ311519     1    21    22
browser |    21  100.0%          2     +  37539076  37539096              DQ311519     1    21    22
browser |    21  100.0%          2     -  37990971  37990992              DQ311519     1    22    22
browser |    21  100.0%          2     -  39498821  39498842              DQ311519     1    22    22
browser |    21  100.0%          2     -  39901178  39901198              DQ311519     1    21    22
browser |    21  100.0%          2     -  41138871  41138891              DQ311519     1    21    22
browser |    21  100.0%          2     -  49079716  49079737              DQ311519     1    22    22
browser |    21  100.0%          2     -  50698186  50698207              DQ311519     1    22    22
browser |    21  100.0%          2     -  63677143  63677163              DQ311519     1    21    22
browser |    21  100.0%          2     -  75580426  75580447              DQ311519     1    22    22
browser |    21  100.0%          2     +  90369926  90369946              DQ311519     1    21    22
browser |    21  100.0%          2     -  91432226  91432247              DQ311519     1    22    22
browser |    21  100.0%          2     - 101297653 101297673              DQ311519     1    21    22
browser |    21  100.0%          2     - 101481871 101481892              DQ311519     1    22    22
browser |    21  100.0%          2     + 106657696 106657716              DQ311519     1    21    22
browser |    21  100.0%          2     + 107589720 107589740              DQ311519     1    21    22
browser |    21  100.0%          2     - 112861496 112861516              DQ311519     1    21    22
browser |    21  100.0%          2     - 115635386 115635406              DQ311519     1    21    22
browser |    21  100.0%          2     + 123743396 123743416              DQ311519     1    21    22
browser |    21  100.0%          2     + 124263899 124263919              DQ311519     1    21    22
browser |    21  100.0%          2     + 141502581 141502601              DQ311519     1    21    22
browser |    21  100.0%          2     + 141831605 141831625              DQ311519     1    21    22
browser |    21  100.0%          2     - 148913911 148913932              DQ311519     1    22    22
browser |    21  100.0%          2     - 149446081 149446101              DQ311519     1    21    22
browser |    21  100.0%          2     + 155200720 155200740              DQ311519     1    21    22
browser |    21  100.0%          2     - 160733478 160733498              DQ311519     1    21    22
browser |    21  100.0%          2     + 168615429 168615449              DQ311519     1    21    22
browser |    21  100.0%          2     + 169063051 169063071              DQ311519     1    21    22
browser |    21  100.0%          3     +   5838026   5838046              DQ311519     1    21    22
browser |    20  100.0%          3     -  15707546  15707566              DQ311519     2    22    22
browser |    21  100.0%          3     -  28872378  28872398              DQ311519     1    21    22
browser |    21  100.0%          3     +  37409859  37409879              DQ311519     1    21    22
browser |    21  100.0%          3     +  69321989  69322009              DQ311519     1    21    22
browser |    21  100.0%          3     -  69930458  69930478              DQ311519     1    21    22
browser |    21  100.0%          3     +  71073404  71073424              DQ311519     1    21    22
browser |    20  100.0%          3     -  77695466  77695485              DQ311519     2    21    22
browser |    21  100.0%          3     -  88769513  88769533              DQ311519     1    21    22
browser |    21  100.0%          3     -  89768121  89768141              DQ311519     1    21    22
browser |    21  100.0%          3     + 108556626 108556646              DQ311519     1    21    22
browser |    21  100.0%          3     + 136156759 136156779              DQ311519     1    21    22
browser |    21  100.0%          3     - 142725306 142725327              DQ311519     1    22    22
browser |    21  100.0%          4     -  11159281  11159301              DQ311519     1    21    22
browser |    21  100.0%          4     +  18737819  18737839              DQ311519     1    21    22
browser |    21  100.0%          4     +  28257235  28257255              DQ311519     1    21    22
browser |    21  100.0%          4     -  37381578  37381598              DQ311519     1    21    22
browser |    21  100.0%          4     -  37390858  37390878              DQ311519     1    21    22
browser |    21  100.0%          4     -  40179456  40179476              DQ311519     1    21    22
browser |    21  100.0%          4     -  54685656  54685677              DQ311519     1    22    22
browser |    21  100.0%          4     -  61657631  61657651              DQ311519     1    21    22
browser |    21  100.0%          4     -  76218268  76218288              DQ311519     1    21    22
browser |    21  100.0%          4     -  81979356  81979376              DQ311519     1    21    22
browser |    21  100.0%          4     -  88972951  88972971              DQ311519     1    21    22
browser |    21  100.0%          4     +  98057721  98057741              DQ311519     1    21    22
browser |    20  100.0%          4     -  99912634  99912653              DQ311519     1    20    22
browser |    21  100.0%          4     + 101642611 101642631              DQ311519     1    21    22
browser |    21  100.0%          4     + 118435236 118435256              DQ311519     1    21    22
browser |    21  100.0%          4     - 121303893 121303913              DQ311519     1    21    22
browser |    21  100.0%          4     - 123042878 123042898              DQ311519     1    21    22
browser |    21  100.0%          4     + 129257019 129257039              DQ311519     1    21    22
browser |    21  100.0%          4     - 135029686 135029706              DQ311519     1    21    22
browser |    21  100.0%          4     - 135759766 135759787              DQ311519     1    22    22
browser |    21  100.0%          5     +   5099331   5099351              DQ311519     1    21    22
browser |    21  100.0%          5     -  21703671  21703692              DQ311519     1    22    22
browser |    21  100.0%          5     +  23508460  23508480              DQ311519     1    21    22
browser |    21  100.0%          5     -  48708128  48708148              DQ311519     1    21    22
browser |    21  100.0%          5     -  50174431  50174452              DQ311519     1    22    22
browser |    20  100.0%          5     +  57906285  57906304              DQ311519     1    20    22
browser |    21  100.0%          5     -  67291663  67291683              DQ311519     1    21    22
browser |    21  100.0%          5     +  68879554  68879574              DQ311519     1    21    22
browser |    21  100.0%          5     +  72588479  72588499              DQ311519     1    21    22
browser |    21  100.0%          5     -  78504788  78504808              DQ311519     1    21    22
browser |    21  100.0%          5     -  90038386  90038406              DQ311519     1    21    22
browser |    21  100.0%          5     -  92251458  92251478              DQ311519     1    21    22
browser |    20  100.0%          5     -  97347196  97347215              DQ311519     2    21    22
browser |    21  100.0%          5     - 116623616 116623637              DQ311519     1    22    22
browser |    20  100.0%          5     - 125051938 125051957              DQ311519     1    20    22
browser |    21  100.0%          5     + 127296201 127296221              DQ311519     1    21    22
browser |    21  100.0%          5     + 134477499 134477519              DQ311519     1    21    22
browser |    21  100.0%          5     + 143814759 143814779              DQ311519     1    21    22
browser |    21  100.0%          6     -  16764253  16764273              DQ311519     1    21    22
browser |    21  100.0%          6     -  22081491  22081511              DQ311519     1    21    22
browser |    21  100.0%          6     +  22609481  22609501              DQ311519     1    21    22
browser |    21  100.0%          6     +  22855311  22855331              DQ311519     1    21    22
browser |    21  100.0%          6     +  24649669  24649689              DQ311519     1    21    22
browser |    20  100.0%          6     -  25132621  25132640              DQ311519     2    21    22
browser |    21  100.0%          6     +  30433190  30433210              DQ311519     1    21    22
browser |    21  100.0%          6     -  33231183  33231203              DQ311519     1    21    22
browser |    21  100.0%          6     -  34274251  34274271              DQ311519     1    21    22
browser |    21  100.0%          6     -  56435781  56435802              DQ311519     1    22    22
browser |    21  100.0%          6     +  57722629  57722649              DQ311519     1    21    22
browser |    21  100.0%          6     -  58469318  58469338              DQ311519     1    21    22
browser |    20  100.0%          6     +  60205996  60206015              DQ311519     2    21    22
browser |    21  100.0%          6     -  60914823  60914843              DQ311519     1    21    22
browser |    21  100.0%          6     +  68528991  68529011              DQ311519     1    21    22
browser |    21  100.0%          6     -  78732293  78732313              DQ311519     1    21    22
browser |    21  100.0%          6     +  87920984  87921004              DQ311519     1    21    22
browser |    21  100.0%          6     -  90570686  90570707              DQ311519     1    22    22
browser |    21  100.0%          6     +  98114001  98114021              DQ311519     1    21    22
browser |    21  100.0%          6     - 128775878 128775898              DQ311519     1    21    22
browser |    21  100.0%          6     - 128801456 128801477              DQ311519     1    22    22
browser |    21  100.0%          6     - 137820271 137820291              DQ311519     1    21    22
browser |    20  100.0%          6     - 139737467 139737486              DQ311519     1    20    22
browser |    21  100.0%          6     - 141257956 141257976              DQ311519     1    21    22
browser |    21  100.0%          7     -  14731946  14731967              DQ311519     1    22    22
browser |    21  100.0%          7     -  17919621  17919641              DQ311519     1    21    22
browser |    21  100.0%          7     +  18400485  18400505              DQ311519     1    21    22
browser |    21  100.0%          7     -  30030178  30030198              DQ311519     1    21    22
browser |    21  100.0%          7     -  47686058  47686078              DQ311519     1    21    22
browser |    21  100.0%          7     -  53478288  53478308              DQ311519     1    21    22
browser |    21  100.0%          7     -  53888023  53888043              DQ311519     1    21    22
browser |    21  100.0%          7     +  55673330  55673350              DQ311519     1    21    22
browser |    21  100.0%          7     +  61133451  61133471              DQ311519     1    21    22
browser |    21  100.0%          7     -  62110636  62110656              DQ311519     1    21    22
browser |    21  100.0%          7     +  65389824  65389844              DQ311519     1    21    22
browser |    21  100.0%          7     -  72507263  72507283              DQ311519     1    21    22
browser |    21  100.0%          7     +  75033730  75033750              DQ311519     1    21    22
browser |    21  100.0%          7     +  81474665  81474685              DQ311519     1    21    22
browser |    21  100.0%          7     +  83750515  83750535              DQ311519     1    21    22
browser |    21  100.0%          7     +  85486155  85486175              DQ311519     1    21    22
browser |    21  100.0%          7     -  86165041  86165061              DQ311519     1    21    22
browser |    21  100.0%          7     -  87715437  87715457              DQ311519     1    21    22
browser |    21  100.0%          7     + 111648020 111648040              DQ311519     1    21    22
browser |    21  100.0%          7     - 116501021 116501041              DQ311519     1    21    22
browser |    21  100.0%          7     + 122644654 122644674              DQ311519     1    21    22
browser |    20  100.0%          7     - 124713318 124713337              DQ311519     1    20    22
browser |    20  100.0%          7     - 129885251 129885271              DQ311519     2    22    22
browser |    21  100.0%          8     +   4169411   4169431              DQ311519     1    21    22
browser |    21  100.0%          8     +  11719144  11719164              DQ311519     1    21    22
browser |    20  100.0%          8     -  22240863  22240882              DQ311519     1    20    22
browser |    21  100.0%          8     -  31169738  31169758              DQ311519     1    21    22
browser |    21  100.0%          8     -  35464611  35464632              DQ311519     1    22    22
browser |    21  100.0%          8     -  35811666  35811687              DQ311519     1    22    22
browser |    21  100.0%          8     -  41708673  41708693              DQ311519     1    21    22
browser |    21  100.0%          8     +  45596865  45596885              DQ311519     1    21    22
browser |    20  100.0%          8     -  55128917  55128936              DQ311519     1    20    22
browser |    21  100.0%          8     -  58961503  58961523              DQ311519     1    21    22
browser |    21  100.0%          8     +  77395010  77395030              DQ311519     1    21    22
browser |    21  100.0%          8     -  81811478  81811498              DQ311519     1    21    22
browser |    21  100.0%          8     +  82559360  82559380              DQ311519     1    21    22
browser |    21  100.0%          8     -  89369701  89369722              DQ311519     1    22    22
browser |    21  100.0%          8     -  95467116  95467137              DQ311519     1    22    22
browser |    21  100.0%          8     + 106093785 106093805              DQ311519     1    21    22
browser |    21  100.0%          8     - 111920116 111920136              DQ311519     1    21    22
browser |    21  100.0%          8     + 111921650 111921670              DQ311519     1    21    22
browser |    21  100.0%          8     - 114739011 114739031              DQ311519     1    21    22
browser |    21  100.0%          8     + 121459311 121459331              DQ311519     1    21    22
browser |    21  100.0%          8     + 122244614 122244634              DQ311519     1    21    22
browser |    21  100.0%          8     - 125902318 125902338              DQ311519     1    21    22
browser |    21  100.0%          9     -  13760618  13760638              DQ311519     1    21    22
browser |    21  100.0%          9     -  21436188  21436208              DQ311519     1    21    22
browser |    21  100.0%          9     -  37554646  37554667              DQ311519     1    22    22
browser |    21  100.0%          9     -  39716183  39716203              DQ311519     1    21    22
browser |    21  100.0%          9     -  43813761  43813781              DQ311519     1    21    22
browser |    21  100.0%          9     +  63115894  63115914              DQ311519     1    21    22
browser |    21  100.0%          9     -  80901866  80901886              DQ311519     1    21    22
browser |    21  100.0%          9     -  84315886  84315907              DQ311519     1    22    22
browser |    21  100.0%          9     + 100258650 100258670              DQ311519     1    21    22
browser |    21  100.0%          9     - 101254001 101254021              DQ311519     1    21    22
browser |    21  100.0%          9     - 102481651 102481671              DQ311519     1    21    22
browser |    21  100.0%          9     - 104280656 104280677              DQ311519     1    22    22
browser |    21  100.0%          9     + 119888956 119888976              DQ311519     1    21    22
browser |    21  100.0%          X     +  20491330  20491350              DQ311519     1    21    22
browser |    21  100.0%          X     -  24182646  24182667              DQ311519     1    22    22
browser |    20  100.0%          X     -  37490478  37490497              DQ311519     2    21    22
browser |    21  100.0%          X     +  39176835  39176855              DQ311519     1    21    22
browser |    21  100.0%          X     -  45089861  45089882              DQ311519     1    22    22
browser |    21  100.0%          X     +  48244114  48244134              DQ311519     1    21    22
browser |    21  100.0%          X     -  51152276  51152296              DQ311519     1    21    22
browser |    21  100.0%          X     -  59995496  59995516              DQ311519     1    21    22
browser |    20  100.0%          X     -  63249266  63249286              DQ311519     2    22    22
browser |    21  100.0%          X     -  67849861  67849881              DQ311519     1    21    22
browser |    21  100.0%          X     +  69395461  69395481              DQ311519     1    21    22
browser |    21  100.0%          X     -  71631051  71631071              DQ311519     1    21    22
browser |    21  100.0%          X     +  74260529  74260549              DQ311519     1    21    22
browser |    21  100.0%          X     +  74439576  74439596              DQ311519     1    21    22
browser |    21  100.0%          X     +  76546385  76546405              DQ311519     1    21    22
browser |    21  100.0%          X     -  77939306  77939327              DQ311519     1    22    22
browser |    21  100.0%          X     +  83000259  83000279              DQ311519     1    21    22
browser |    21  100.0%          X     +  83919461  83919481              DQ311519     1    21    22
browser |    20  100.0%          X     - 103551593 103551612              DQ311519     2    21    22
browser |    21  100.0%          X     - 104217423 104217443              DQ311519     1    21    22
browser |    21  100.0%          X     - 130821493 130821513              DQ311519     1    21    22
browser |    21  100.0%          X     + 156283240 156283260              DQ311519     1    21    22
browser |    21  100.0%          X     + 158879726 158879746              DQ311519     1    21    22
browser |    21  100.0%          X     + 164793615 164793635              DQ311519     1    21    22
browser |    21  100.0%          X     - 166454126 166454147              DQ311519     1    22    22
browser |    21  100.0%          X     - 168608401 168608422              DQ311519     1    22    22

View details of parts of alignment within browser window
.
View table schema

Go to Mouse mRNAs track controls

Data last updated at UCSC: 2020-08-18

Description

The mRNA track shows alignments between mouse mRNAs in GenBank and the genome.

Display Conventions and Configuration

This track follows the display conventions for PSL alignment tracks. In dense display mode, the items that are more darkly shaded indicate matches of better quality.

The description page for this track has a filter that can be used to change the display mode, alter the color, and include/exclude a subset of items within the track. This may be helpful when many items are shown in the track display, especially when only some are relevant to the current task.

To use the filter:

  1. Type a term in one or more of the text boxes to filter the mRNA display. For example, to apply the filter to all mRNAs expressed in a specific organ, type the name of the organ in the tissue box. To view the list of valid terms for each text box, consult the table in the Table Browser that corresponds to the factor on which you wish to filter. For example, the "tissue" table contains all the types of tissues that can be entered into the tissue text box. Multiple terms may be entered at once, separated by a space. Wildcards may also be used in the filter.
  2. If filtering on more than one value, choose the desired combination logic. If "and" is selected, only mRNAs that match all filter criteria will be highlighted. If "or" is selected, mRNAs that match any one of the filter criteria will be highlighted.
  3. Choose the color or display characteristic that should be used to highlight or include/exclude the filtered items. If "exclude" is chosen, the browser will not display mRNAs that match the filter criteria. If "include" is selected, the browser will display only those mRNAs that match the filter criteria.

This track may also be configured to display codon coloring, a feature that allows the user to quickly compare mRNAs against the genomic sequence. For more information about this option, go to the Codon and Base Coloring for Alignment Tracks page. Several types of alignment gap may also be colored; for more information, go to the Alignment Insertion/Deletion Display Options page.

Methods

GenBank mouse mRNAs were aligned against the genome using the blat program. When a single mRNA aligned in multiple places, the alignment having the highest base identity was found. Only alignments having a base identity level within 0.5% of the best and at least 96% base identity with the genomic sequence were kept.

Credits

The mRNA track was produced at UCSC from mRNA sequence data submitted to the international public sequence databases by scientists worldwide.

References

Benson DA, Cavanaugh M, Clark K, Karsch-Mizrachi I, Lipman DJ, Ostell J, Sayers EW. GenBank. Nucleic Acids Res. 2013 Jan;41(Database issue):D36-42. PMID: 23193287; PMC: PMC3531190

Benson DA, Karsch-Mizrachi I, Lipman DJ, Ostell J, Wheeler DL. GenBank: update. Nucleic Acids Res. 2004 Jan 1;32(Database issue):D23-6. PMID: 14681350; PMC: PMC308779

Kent WJ. BLAT - the BLAST-like alignment tool. Genome Res. 2002 Apr;12(4):656-64. PMID: 11932250; PMC: PMC187518