Simple Tandem Repeats by TRF (AT)
Item: AT
Position: CM032397.1:6147246-6147327
Genomic Size: 82
View DNA for this feature (GCA_019049475.1/ASM1904947v1 Jun. 2021)

Length of repeat unit2
Mean number of copies of repeat41.5
Length of consensus sequence2
Percentage Match97
Percentage Indel2
Alignment Score = 2*match-7*mismatch-7*indel; minscore=50157
Percent of A's in repeat unit50
Percent of C's in repeat unit0
Percent of G's in repeat unit0
Percent of T's in repeat unit50
Sequence of repeat unit elementAT
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This track displays simple tandem repeats (possibly imperfect repeats) on the 29 Jun 2021 Eueides isabella/GCA_019049475.1_ASM1904947v1/GCA_019049475.1 genome assembly, located by Tandem Repeats Finder (TRF) which is specialized for this purpose. These repeats can occur within coding regions of genes and may be quite polymorphic. Repeat expansions are sometimes associated with specific diseases.

There are 131,566 items in the track covering 14,446,074 bases, assembly size 440,123,586 bases, percent coverage % 3.28.


For more information about the TRF program, see Benson (1999).


TRF was written by Gary Benson.


Benson G. Tandem repeats finder: a program to analyze DNA sequences. Nucleic Acids Res. 1999 Jan 15;27(2):573-80. PMID: 9862982; PMC: PMC148217


This track was generated using a modification of a program developed by G. Miklem and L. Hillier (unpublished).


Gardiner-Garden M, Frommer M. CpG islands in vertebrate genomes. J Mol Biol. 1987 Jul 20;196(2):261-82. PMID: 3656447