Simple Tandem Repeats by TRF (CTGCGT)
Position: NW_025091281.1:1718845-1718885
Genomic Size: 41
View DNA for this feature (GCF_018340605.1/ascomycetes A.pseudoviridinutans IFM 55266)

Length of repeat unit6
Mean number of copies of repeat6.8
Length of consensus sequence6
Percentage Match88
Percentage Indel0
Alignment Score = 2*match-7*mismatch-7*indel; minscore=5055
Percent of A's in repeat unit2
Percent of C's in repeat unit36
Percent of G's in repeat unit29
Percent of T's in repeat unit31
Sequence of repeat unit elementCTGCGT
View table schema

Go to Simple Repeats track controls


This track displays simple tandem repeats (possibly imperfect repeats) on the 12 Mar 2021 Aspergillus pseudoviridinutans/GCF_018340605.1_Asppvi_assembly01/GCF_018340605.1 genome assembly, located by Tandem Repeats Finder (TRF) which is specialized for this purpose. These repeats can occur within coding regions of genes and may be quite polymorphic. Repeat expansions are sometimes associated with specific diseases.

There are 2,257 items in the track covering 132,900 bases, assembly size 33,330,675 bases, percent coverage % 0.40.


For more information about the TRF program, see Benson (1999).


TRF was written by Gary Benson.


Benson G. Tandem repeats finder: a program to analyze DNA sequences. Nucleic Acids Res. 1999 Jan 15;27(2):573-80. PMID: 9862982; PMC: PMC148217


This track was generated using a modification of a program developed by G. Miklem and L. Hillier (unpublished).


Gardiner-Garden M, Frommer M. CpG islands in vertebrate genomes. J Mol Biol. 1987 Jul 20;196(2):261-82. PMID: 3656447