Simple Tandem Repeats by TRF (TTTTTGCTTTGTTTGT)
 
Item: TTTTTGCTTTGTTTGT
Position: LR999891.1:8048939-8048969
Genomic Size: 31
View DNA for this feature (GCA_905220335.1/large yellow underwing)

Length of repeat unit16
Mean number of copies of repeat1.9
Length of consensus sequence16
Percentage Match93
Percentage Indel0
Alignment Score = 2*match-7*mismatch-7*indel; minscore=5053
Percent of A's in repeat unit0
Percent of C's in repeat unit6
Percent of G's in repeat unit16
Percent of T's in repeat unit77
Entropy0.97
Sequence of repeat unit elementTTTTTGCTTTGTTTGT
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Description

This track displays simple tandem repeats (possibly imperfect repeats) on the 16 Feb 2021 Noctua pronuba/GCA_905220335.1_ilNocPron1.1/GCA_905220335.1 genome assembly, located by Tandem Repeats Finder (TRF) which is specialized for this purpose. These repeats can occur within coding regions of genes and may be quite polymorphic. Repeat expansions are sometimes associated with specific diseases.

There are 84,012 items in the track covering 10,789,381 bases, assembly size 529,194,529 bases, percent coverage % 2.04.

Methods

For more information about the TRF program, see Benson (1999).

Credits

TRF was written by Gary Benson.

References

Benson G. Tandem repeats finder: a program to analyze DNA sequences. Nucleic Acids Res. 1999 Jan 15;27(2):573-80. PMID: 9862982; PMC: PMC148217

Credits

This track was generated using a modification of a program developed by G. Miklem and L. Hillier (unpublished).

References

Gardiner-Garden M, Frommer M. CpG islands in vertebrate genomes. J Mol Biol. 1987 Jul 20;196(2):261-82. PMID: 3656447