MGC Clone BC005794.1
  Pax9
Mus musculus paired box gene 9, mRNA (cDNA clone MGC:11500 IMAGE:3707718), complete cds.
RefSeq: NM_011041.3
RefSeq Summary: This gene is a member of the paired box (PAX) family of transcription factors. Members of this gene family typically contain a paired box domain, an octapeptide, and a paired-type homeodomain. These genes play critical roles during fetal development and cancer growth. Mice lacking this gene exhibit impaired development of organs, musculature and the skeleton, including absent and abnormally developed teeth, and neonatal lethality. Mutations in the human gene are associated with selective tooth agenesis-3. [provided by RefSeq, Sep 2015]. Sequence Note: This RefSeq record was created from transcript and genomic sequence data to make the sequence consistent with the reference genome assembly. The genomic coordinates used for the transcript record were based on transcript alignments.
Clone Source: Mammalian Gene Collection

MGC Clone Information and Links
 
GenePax9
Productpaired box gene 9
Tissuemammary tumor. c3(1)-tag model. infiltrating ductal carcinoma. 5 month old virgin mouse.
LibraryNCI_CGAP_Mam6
Developmentn/a
CDS163..1191
Modification date2006-06-15
Links
MGC clone database
IMAGE clone 3707718
Genbank BC005794
RefSeq NM_011041.3
CCDS25924.1
UCSC Gene ENSMUST00000152848.1
Brent Lab Clone Validation

RefSeq CDS isoform similarity of MGC clone BC005794
 
RefSeqPositionSimilarity
NM_011041.3chr12:56695471-56712822100.00%
This table compares the similarity of the BLAT genomic alignments of the CDS of this MGC clone with alignment of RefSeq mRNA CDSs. This is a metric of the similarity of the exon structure of the mRNAs, rather than a measure of their nucleotide sequence similarity.

Sequences
 
mRNAProtein
Genomic
Reference genome mRNA

Alignments
 
genomic (browser)span mRNA (alignment details)identityaligned
chr12:56695699-5671033614638+ BC005794:1-162299.88%99.08%

NCBI Clone Validation
  No clone discrepancies annotated