HiC_Itri_2 Feb. 2021 hub_48108_GCF_016881025.1 chrUn_NW_024407213v1:81,703,097-81,703,116 UCSC Genome Browser v445

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UCSC Genome Browser on HiC_Itri_2 Feb. 2021 thirteen-lined ground squirrel (2021 HiC) (GCF_016881025.1)
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chrUn_NW_024407213v1:81,703,097-81,703,116 20 bp.

examples

move start

Click on a feature for details. Shift+click+drag to zoom in. Click grey side bars for track options. Drag side bars or labels up or down to reorder tracks. Drag tracks left or right to new position. Press "?" for keyboard shortcuts. Use drop-down controls below and press refresh to alter tracks displayed.

move end

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Couldn't open https://hgdownload.soe.ucsc.edu/hubs/GCA/009/914/755/GCA_009914755.4/hub.txt' arachni_xss_in_tag='24c1035c597d439117c8ebfd3e2ed6b1' blah='

Couldn't open https://hgdownload.soe.ucsc.edu/hubs/GCA/009/914/755/GCA_009914755.4/hub.txt" arachni_xss_in_tag="24c1035c597d439117c8ebfd3e2ed6b1" blah="

Mapping and Sequencing

Tandem Dups

Genes and Gene Predictions

NCBI RefSeq

Augustus

mRNA and EST

RefSeq mRNAs

Expression and Regulation

CpG Islands

Variation and Repeats

RepeatMasker

Simple Repeats

WM + SDust

left 10%	ctrl+j	track search	t then s
left 1/2 screen	j	default tracks	d then t
left one screen	J	default order	d then o
right 10%	ctrl+l	hide all	h then a
right 1/2 screen	l	custom tracks	c then t
right one screen	L	track collections	t then c
jump to position box	/	track hubs	t then h
zoom in 1.5x	ctrl+i	configure	c then f
zoom in 3x	i	reverse	r then v
zoom in 10x	I	resize	r then s
zoom in base level	b	refresh	r then f
zoom out 1.5x	ctrl+k	view chrom names	v then s
zoom out 3x	k	send to external tool	s then t
zoom out 10x	K	exon view	e then v
zoom out 100x	0	default view	d then v
zoom to ...		view DNA	v then d
50bp (1 zero)	1	Reset all User Settings	c then r
500bp (2 zeros)	2	Tools - BLAT	t then b
5000bp (3 zeros)	3	Tools - Table Browser	t then t
50kbp (4 zeros)	4	Tools - PCR	t then i
500kbp (5 zeros)	5	My Sessions	s then s
5Mbp (6 zeros)	6	Public Sessions	p then s
Highlight all (mark)	h then m	Clear all Highlights	h then c