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Configure Tracks on UCSC Genome Browser: Dog Sep. 2011 (Broad CanFam3.1/canFam3)
  Tracks:    Groups:
Control track and group visibility more selectively below.
-   EPD Viewer Hub    
All CAGE (+) FANTOM5 CAGE plus strand
CAGE Selected FANTOM CAGE samples
All CAGE (-) FANTOM5 CAGE Minus Strand
EPDnew v1 EPDnew (v001) promoters
-   Mapping and Sequencing    
Base Position Chromosome position in bases. (Clicks here zoom in 3x)
Assembly Assembly from Fragments
Gap Gap Locations
GC Percent GC Percent in 5-Base Windows
INSDC Accession at INSDC - International Nucleotide Sequence Database Collaboration
RefSeq Acc RefSeq Accession
Restr Enzymes Restriction Enzymes from REBASE
Short Match Perfect Matches to Short Sequence ()
-   Genes and Gene Predictions    
NCBI RefSeq RefSeq genes from NCBI
AUGUSTUS AUGUSTUS ab initio gene predictions v3.1
Ensembl Genes Ensembl Genes
Geneid Genes Geneid Gene Predictions
Genscan Genes Genscan Gene Predictions
Other RefSeq Non-Dog RefSeq Genes
TransMap V5 TransMap Alignments Version 5
     TransMap ESTs     TransMap EST Mappings Version 5
     TransMap RNA     TransMap GenBank RNA Mappings Version 5
     TransMap RefGene     TransMap RefSeq Gene Mappings Version 5
     TransMap Ensembl     TransMap Ensembl and GENCODE Mappings Version 5
-   mRNA and EST    
Dog ESTs Dog ESTs Including Unspliced
Dog mRNAs Dog mRNAs from GenBank
Other mRNAs Non-Dog mRNAs from GenBank
Spliced ESTs Dog ESTs That Have Been Spliced
-   Expression and Regulation    
CpG Islands CpG Islands (Islands < 300 Bases are Light Green)
     Unmasked CpG     CpG Islands on All Sequence (Islands < 300 Bases are Light Green)
     CpG Islands     CpG Islands (Islands < 300 Bases are Light Green)
ORegAnno Regulatory elements from ORegAnno
-   Comparative Genomics    
Rat Chain/Net Rat (Jul. 2014 (RGSC 6.0/rn6)), Chain and Net Alignments
Cat Chain/Net Cat (Nov. 2014 (ICGSC Felis_catus_8.0/felCat8)), Chain and Net Alignments
Dog Chain/Net Dog (Mar. 2020 (UU_Cfam_GSD_1.0/canFam4)), Chain and Net Alignments
Mouse Chain/Net Mouse (Dec. 2011 (GRCm38/mm10)), Chain and Net Alignments
Tarsier Chain/Net Tarsier (Sep. 2013 (Tarsius_syrichta-2.0.1/tarSyr2)), Chain and Net Alignments
hg19 Chain/Net Human (Feb. 2009 (GRCh37/hg19)), Chain and Net Alignments
hg38 Chain/Net Human (Dec. 2013 (GRCh38/hg38)), Chain and Net Alignments
X. tropicalis Chain/Net X. tropicalis (Jul. 2016 (Xenopus_tropicalis_v9.1/xenTro9)), Chain and Net Alignments
-   Variation and Repeats    
RepeatMasker Repeating Elements by RepeatMasker
new EVA SNP Release 3 Short Genetic Variants from European Variant Archive Release 3
Interrupted Rpts Fragments of Interrupted Repeats Joined by RepeatMasker ID
Microsatellite Microsatellites - Di-nucleotide and Tri-nucleotide Repeats
Simple Repeats Simple Tandem Repeats by TRF
WM + SDust Genomic Intervals Masked by WindowMasker + SDust