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Configure Tracks on UCSC Genome Browser: human T2T-CHM13 v2.0 (GCA_009914755.4)
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-   Mapping and Sequencing    
Base Position Chromosome position in bases. (Clicks here zoom in 3x)
CHM13 unique CHM13 unique in comparison to GRCh38/hg38 and GRCh37/hg19
rDNA models Consensus rDNA models
Assembly Assembly from NCBI Genbank Sequences
CenSat Annotation Centromeric Satellite Annotation
GC Percent GC Percent in 5-Base Windows
Human liftOver LiftOver alignments from CHM13 to hg19/hg38 and HG002 with two different pipelines
Microsatellites Microsatellite repeats
Restr Enzymes Restriction Enzymes from REBASE
Short Match Perfect Matches to Short Sequence ()
-   Genes and Gene Predictions    
CAT/Liftoff Genes CAT + Liftoff Gene Annotations
NCBI RefSeq RefSeq gene predictions from NCBI
-   mRNA and EST    
CHM13 PROseq CHM13 PROseq stranded with unique genome-wide kmer filtering
CHM13 RNA-Seq CHM13 RNA-Seq (paired-end) unique genome-wide kmer filtering (unstranded)
RefSeq mRNAs RefSeq mRNAs mapped to this assembly
-   Expression and Regulation    
CpG Islands CpG Islands (Islands < 300 Bases are Light Green)
T2T Encode T2T Encode Reanalysis
-   Comparative Genomics    
Human Chain/Net Chain and Net alignments to target sequence: GCA_009914755.4_T2T-CHM13v2.0
-   Variation and Repeats    
ClinVar Variants ClinVar Variants 20220313 (lifted)
dbSNP 155 dbSNP 155 (lifted)
GWAS Variants GWAS Variants 2022-03-08 (lifted)
RepeatMasker RepeatMasker Repetitive Elements
SEDEF Segmental Dups SEDEF Segmental Duplications
Simple Repeats Simple Tandem Repeats by TRF
WM + SDust Genomic Intervals Masked by WindowMasker + SDust
SGDP copy number SGDP copy number estimates
SGDP copy number subset SGDP copy number estimates subset