Agilent CGH Track Settings
Agilent CGH Microarray probesets   (All Variation and Repeats tracks)

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 Ag CGH 1x1M  Agilent SurePrint G3 Rat CGH Microarray 1x1M AMADID 027065   Data format 
 Ag CGH 4x180K  Agilent SurePrint G3 Rat CGH Microarray 4x180K AMADID 027064   Data format 
 Ag CGH 1x244K  Agilent SurePrint HD Rat CGH Microarray 1x244K AMADID 015223   Data format 
 Ag CGH 2x105K  Agilent SurePrint HD Rat CGH Microarray 2x105K AMADID 015235   Data format 


This track displays the probes from the Agilent Catalog Oligonucleotide Microarrays.

Agilent's oligonucleotide CGH (Comparative Genomic Hybridization) platform enables the study of genome-wide DNA copy number changes at a high resolution. The probes on Agilent aCGH microarrays are 60-mer oligonucleotides synthesized in situ using Agilent's inkjet SurePrint technology. The probes represented on the Agilent CGH microarrays have been selected using algorithms developed specifically for the CGH application, assuring optimal performance of these probes in detecting DNA copy number changes.

The Agilent catalog CGH microarrays are printed on 1 in. x 3 in. glass slides and are available in several formats. The rat catalog SurePrint G3 microarrays formats are the 1x1M and 4x180K. The legacy rat catalog SurePrint HD microarrays are the 1x244K and 2x105K.

Subtracks were colored in alternating shades of green and orange to highlight track boundaries. The track consists of the following subtracks:

Description AMADID Samples per Slide Biological Features Median Probe Spacing Gene-biased
SurePrint G3 Rat CGH Microarray 1x1M 027065 1 966,967 1.7 kb Yes
SurePrint G3 Rat CGH Microarray 4x180K 027064 4 174,012 11 kb Yes
SurePrint HD Rat CGH Microarray 1x244K 015223 1 235,974 4.9 kb Yes
SurePrint HD Rat CGH Microarray 2x105K 015235 2 97,973 19 kb Yes


More information on the Agilent Oligonucleotide Microarrays is available here.

Barrett MT, Scheffer A, Ben-Dor A, Sampas N, Lipson D, Kincaid R, Tsang P, Curry B, Baird K, Meltzer PS et al. Comparative genomic hybridization using oligonucleotide microarrays and total genomic DNA. Proc Natl Acad Sci U S A. 2004 Dec 21;101(51):17765-70. PMID: 15591353; PMC: PMC535426


Thanks to Shane Giles, Peter Webb, and Anniek De Witte from Agilent Technologies for providing these data.