Description
This track displays the probes from the
Agilent Catalog Oligonucleotide Microarrays.
Agilent's oligonucleotide CGH (Comparative Genomic Hybridization) platform enables
the study of genome-wide DNA copy number changes at a high resolution. The probes
on Agilent aCGH microarrays are 60-mer oligonucleotides synthesized in situ using
Agilent's inkjet SurePrint technology. The probes represented on the Agilent CGH
microarrays have been selected using algorithms developed specifically for the
CGH application, assuring optimal performance of these probes in detecting DNA
copy number changes.
The Agilent catalog CGH microarrays are printed on 1 in. x 3 in. glass slides
and are available in several formats.
The rat catalog SurePrint G3 microarrays formats are the 1x1M and 4x180K.
The legacy rat catalog SurePrint HD microarrays are the 1x244K and 2x105K.
Subtracks were colored in alternating shades of green and orange to highlight track boundaries.
The track consists of the following subtracks:
| Description |
AMADID |
Samples per Slide |
Biological Features |
Median Probe Spacing |
Gene-biased |
| SurePrint G3 Rat CGH Microarray 1x1M |
027065 |
1 |
966,967 |
1.7 kb |
Yes |
| SurePrint G3 Rat CGH Microarray 4x180K |
027064 |
4 |
174,012 |
11 kb |
Yes |
| SurePrint HD Rat CGH Microarray 1x244K |
015223 |
1 |
235,974 |
4.9 kb |
Yes |
| SurePrint HD Rat CGH Microarray 2x105K |
015235 |
2 |
97,973 |
19 kb |
Yes |
|
References
More information on the Agilent Oligonucleotide Microarrays is
available
here.
Barrett MT, Scheffer A, Ben-Dor A, Sampas N, Lipson D, Kincaid R, Tsang P, Curry B, Baird K, Meltzer
PS et al.
Comparative genomic hybridization using oligonucleotide microarrays and total genomic DNA.
Proc Natl Acad Sci U S A. 2004 Dec 21;101(51):17765-70.
PMID: 15591353; PMC: PMC535426
Credits
Thanks to Shane Giles, Peter Webb, and Anniek De Witte from Agilent
Technologies for providing these data.
| 
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