Quality Scores Track Settings
Guinea pig Sequencing Quality Scores   (All Mapping and Sequencing tracks)

Display mode:      Duplicate track

Type of graph:
Track height: pixels (range: 16 to 128)
Data view scaling: Always include zero: 
Vertical viewing range: min:  max:   (range: 0 to 63)
Transform function:Transform data points by: 
Windowing function: Smoothing window:  pixels
Negate values:
Draw y indicator lines:at y = 0.0:    at y =
Graph configuration help
Data schema/format description and download
Data last updated at UCSC: 2008-04-03


The Quality Scores track shows the sequencing quality score of each base in the assembly. The height at each position of the track indicates the quality of the base. When zoomed out to a large range, the heights reflect the averaged scores.

This track may be configured in a variety of ways to highlight different aspects of the displayed information. Click the Graph configuration help link for an explanation of the configuration options.


The quality scores were provided as part of the guinea pig assembly. The database representation and graphical display code were written by Hiram Clawson.