This track shows the 'lift over' calculated alignments from the mm39/mouse to
the mm10/mouse genome assembly, used by the UCSC
Display Conventions and Configuration
The alignments are shown as "chains" of alignable regions. The display is similar to
the other chain tracks, see our
chain display documentation for more information.
UCSC liftOver chain files for mm39 to mm10 can be obtained from a dedicated
directory on our
download server mm10/liftOver directory. Specifically,
the mm10ToMm39.over.chain.gz file.
The table can also be explored interactively with the
Table Browser or the
The lift over chain file is constructed with the
doSameSpeciesLiftOver processing using the blat
genome alignment program.