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Set-Cookie: hguid.genome-euro=432618893_gvn89hNuUFSSOGRjBz2KbmKNWMzq; path=/;; expires=Thu, 31-Dec-2037 23:59:59 GMT Content-Type:text/html WM + SDust #2 Track Settings
WM + SDust #2 Track Settings
Genomic Intervals Masked by WindowMasker + SDust copy #2   (All Variation and Repeats tracks)

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Data schema/format description and download
Data last updated at UCSC: 2020-01-29


This track depicts masked sequence as determined by WindowMasker. The WindowMasker tool is included in the NCBI C++ toolkit. The source code for the entire toolkit is available from the NCBI FTP site.


To create this track, WindowMasker was run with the following parameters:

windowmasker -mk_counts true -input wuhCor1.fa -output wm_counts
windowmasker -ustat wm_counts -sdust true -input wuhCor1.fa -output repeats.bed
The repeats.bed (BED3) file was loaded into the "windowmaskerSdust" table for this track.


Morgulis A, Gertz EM, Schäffer AA, Agarwala R. WindowMasker: window-based masker for sequenced genomes. Bioinformatics. 2006 Jan 15;22(2):134-41. PMID: 16287941