FISH Clones Track Settings
Clones Placed on Cytogenetic Map Using FISH   (All Mapping and Sequencing tracks)

Display mode:      Duplicate track
Filter: red green blue exclude include none
Data schema/format description and download
Assembly: Human Dec. 2013 (GRCh38/hg38)
Data coordinates converted via liftOver from: Mar. 2006 (NCBI36/hg18)
Data last updated at UCSC: 2015-07-31

Note: lifted from hg18


This track shows the location of fluorescent in situ hybridization (FISH)-mapped clones along the assembly sequence. The locations of these clones were obtained from the NCBI Human BAC Resource here. Earlier versions of this track obtained this information directly from the paper Cheung, et al. (2001).

More information about the BAC clones, including how they may be obtained, can be found at the Human BAC Resource and the Clone Registry web sites hosted by NCBI. To view Clone Registry information for a clone, click on the clone name at the top of the details page for that item.

Using the Filter

This track has a filter that can be used to change the color or include/exclude the display of a dataset from an individual lab. This is helpful when many items are shown in the track display, especially when only some are relevant to the current task. The filter is located at the top of the track description page, which is accessed via the small button to the left of the track's graphical display or through the link on the track's control menu. To use the filter:

  1. In the pulldown menu, select the lab whose data you would like to highlight or exclude in the display.
  2. Choose the color or display characteristic that will be used to highlight or include/exclude the filtered items. If "exclude" is chosen, the browser will not display clones from the lab selected in the pulldown list. If "include" is selected, the browser will display clones only from the selected lab.

When you have finished configuring the filter, click the Submit button.


We would like to thank all of the labs that have contributed to this resource:


Cheung VG, Nowak N, Jang W, Kirsch IR, Zhao S, Chen XN, Furey TS, Kim UJ, Kuo WL, Olivier M et al. Integration of cytogenetic landmarks into the draft sequence of the human genome. Nature. 2001 Feb 15;409(6822):953-8. PMID: 11237021