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HAL snakes Track Settings

HAL snakes

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*Species*
Podiceps_cristatus
Podilymbus_podiceps
Phoenicopterus_ruber
Mesitornis_unicolor
Syrrhaptes_paradoxus
Pterocles_gutturalis
Pterocles_burchelli
Columbina_picui
Patagioenas_fasciata
Columba_livia
Alopecoenas_beccarii
Caloenas_nicobarica
Steatornis_caripensis
Nyctibius_grandis
Nyctibius_bracteatus
Podargus_strigoides
Aegotheles_bennettii
Chaetura_pelagica
Hemiprocne_comata
Oreotrochilus_melanogaster
Calypte_anna
Chordeiles_acutipennis
Antrostomus_carolinensis
Nyctiprogne_leucopyga
Tauraco_erythrolophus
Corythaixoides_concolor
Corythaeola_cristata
Lophotis_ruficrista
Chlamydotis_macqueenii
Ardeotis_kori
Crotophaga_sulcirostris
Geococcyx_californianus
Centropus_bengalensis
Centropus_unirufus
Ceuthmochares_aereus
Piaya_cayana
Cuculus_canorus
Leptosomus_discolor
Rhinopomastus_cyanomelas
Upupa_epops
Buceros_rhinoceros
Bucorvus_abyssinicus
Merops_nubicus
Eurystomus_gularis
Brachypteracias_leptosomus
Todus_mexicanus
Ceyx_cyanopectus
Chloroceryle_aenea
Halcyon_senegalensis
Baryphthengus_martii
Bucco_capensis
Galbula_dea
Picoides_pubescens
Indicator_maculatus
Psilopogon_haemacephalus
Eubucco_bourcierii
Ramphastos_sulfuratus
Semnornis_frantzii
Tricholaema_leucomelas
Trogon_melanurus
Apaloderma_vittatum
Urocolius_indicus
Colius_striatus
Tyto_alba
Strix_occidentalis
Ciccaba_nigrolineata
Glaucidium_brasilianum
Cathartes_aura
Sagittarius_serpentarius
Pandion_haliaetus
Circaetus_pectoralis
Haliaeetus_albicilla
Haliaeetus_leucocephalus
Spizaetus_tyrannus
Aquila_chrysaetos
Cariama_cristata
Chunga_burmeisteri
Nestor_notabilis
Melopsittacus_undulatus
Agapornis_roseicollis
Amazona_guildingii
Probosciger_aterrimus
Eolophus_roseicapillus
Acanthisitta_chloris
Atrichornis_clamosus
Menura_novaehollandiae
Ptilonorhynchus_violaceus
Climacteris_rufus
Malurus_elegans
Dasyornis_broadbenti
Origma_solitaria
Pardalotus_punctatus
Grantiella_picta
Pomatostomus_ruficeps
Orthonyx_spaldingii
Ptilorrhoa_leucosticta
Mohoua_ochrocephala
Daphoenositta_chrysoptera
Eulacestoma_nigropectus
Oreocharis_arfaki
Pteruthius_melanotis
Vireo_altiloquus
Erpornis_zantholeuca
Oriolus_oriolus
Pachycephala_philippinensis
Falcunculus_frontatus
Aleadryas_rufinucha
Chaetorhynchus_papuensis
Rhipidura_dahli
Dicrurus_megarhynchus
Struthidea_cinerea
Aphelocoma_coerulescens
Corvus_moneduloides
Corvus_brachyrhynchos
Corvus_cornix
Lanius_ludovicianus
Ifrita_kowaldi
Paradisaea_raggiana
Myiagra_hebetior
Machaerirhynchus_nigripectus
Rhagologus_leucostigma
Dryoscopus_gambensis
Dyaphorophyia_castanea
Mystacornis_crossleyi
Gymnorhina_tibicen
Edolisoma_coerulescens
Cnemophilus_loriae
Notiomystis_cincta
Callaeas_wilsoni
Anthoscopus_minutus
Poecile_atricapillus
Pseudopodoces_humilis
Parus_major
Panurus_biarmicus
Alaudala_cheleensis
Sylvietta_virens
Cisticola_juncidis
Hippolais_icterina
Acrocephalus_arundinaceus
Oxylabes_madagascariensis
Donacobius_atricapilla
Locustella_ochotensis
Hirundo_rustica
Phylloscopus_trochilus
Rhadina_sibilatrix
Hylia_prasina
Aegithalos_caudatus
Cettia_cetti
Horornis_vulcanius
Erythrocercus_mccallii
Sinosuthora_webbiana
Sylvia_borin
Sylvia_atricapilla
Pomatorhinus_ruficollis
Illadopsis_cleaveri
Leiothrix_lutea
Zosterops_hypoxanthus
Zosterops_lateralis
Sterrhoptilus_dennistouni
Pycnonotus_jocosus
Brachypodius_atriceps
Nicator_chloris
Tichodroma_muraria
Thryothorus_ludovicianus
Polioptila_caerulea
Certhia_familiaris
Certhia_brachydactyla
Sitta_europaea
Elachura_formosa
Cinclus_mexicanus
Buphagus_erythrorhynchus
Toxostoma_redivivum
Leucopsar_rothschildi
Sturnus_vulgaris
Rhabdornis_inornatus
Catharus_fuscescens
Ficedula_albicollis
Saxicola_maurus
Oenanthe_oenanthe
Erithacus_rubecula
Copsychus_sechellarum
Cercotrichas_coryphaeus
Regulus_satrapa
Phainopepla_nitens
Bombycilla_garrulus
Promerops_cafer
Dicaeum_eximium
Leptocoma_aspasia
Chloropsis_cyanopogon
Peucedramus_taeniatus
Urocynchramus_pylzowi
Ploceus_nigricollis
Vidua_chalybeata
Vidua_macroura
Lonchura_striata
Taeniopygia_guttata
Prunella_fulvescens
Prunella_himalayana
Passer_domesticus
Hypocryptadius_cinnamomeus
Motacilla_alba
Hemignathus_wilsoni
Chlorodrepanis_virens
Serinus_canaria
Loxia_curvirostra
Loxia_leucoptera
Rhodinocichla_rosea
Calcarius_ornatus
Emberiza_fucata
Nesospiza_acunhae
Geospiza_fortis
Sporophila_hypoxantha
Pheucticus_melanocephalus
Cardinalis_cardinalis
Passerina_amoena
Quiscalus_mexicanus
Molothrus_ater
Agelaius_phoeniceus
Setophaga_coronata
Setophaga_kirtlandii
Zonotrichia_albicollis
Junco_hyemalis
Melospiza_melodia
Spizella_passerina
Irena_cyanogastra
Picathartes_gymnocephalus
Chaetops_frenatus
Drymodes_brunneopygia
Melanocharis_versteri
Cephalopterus_ornatus
Pachyramphus_minor
Onychorhynchus_coronatus
Oxyruncus_cristatus
Piprites_chloris
Neopipo_cinnamomea
Tachuris_rubrigastra
Tyrannus_savana
Mionectes_macconnelli
Lepidothrix_coronata
Manacus_manacus
Rhegmatorhina_hoffmannsi
Sakesphorus_luctuosus
Grallaria_varia
Scytalopus_superciliaris
Formicarius_rufipectus
Sclerurus_mexicanus
Furnarius_figulus
Campylorhamphus_procurvoides
Xiphorhynchus_elegans
Serilophus_lunatus
Neodrepanis_coruscans
Pitta_sordida
Sapayoa_aenigma
Calyptomena_viridis

List subtracks: only selected/visible all ()
	hide Configure	Acanthisitta_chloris	Acanthisitta_chloris alignment	Schema
	hide Configure	Acrocephalus_arundinaceus	Acrocephalus_arundinaceus alignment	Schema
	hide Configure	Aegithalos_caudatus	Aegithalos_caudatus alignment	Schema
	hide Configure	Aegotheles_bennettii	Aegotheles_bennettii alignment	Schema
	hide Configure	Agapornis_roseicollis	Agapornis_roseicollis alignment	Schema
	hide Configure	Agelaius_phoeniceus	Agelaius_phoeniceus alignment	Schema
	hide Configure	Alaudala_cheleensis	Alaudala_cheleensis alignment	Schema
	hide Configure	Alca_torda	Alca_torda alignment	Schema
	hide Configure	Aleadryas_rufinucha	Aleadryas_rufinucha alignment	Schema
	hide Configure	Alectura_lathami	Alectura_lathami alignment	Schema
	hide Configure	Alopecoenas_beccarii	Alopecoenas_beccarii alignment	Schema
	hide Configure	Amazona_guildingii	Amazona_guildingii alignment	Schema
	hide Configure	Anas_platyrhynchos	Anas_platyrhynchos alignment	Schema
	hide Configure	Anas_zonorhyncha	Anas_zonorhyncha alignment	Schema
	hide Configure	Anhinga_anhinga	Anhinga_anhinga alignment	Schema
	hide Configure	Anhinga_rufa	Anhinga_rufa alignment	Schema
	hide Configure	Anser_cygnoid	Anser_cygnoid alignment	Schema
	hide Configure	Anseranas_semipalmata	Anseranas_semipalmata alignment	Schema
	hide Configure	Anthoscopus_minutus	Anthoscopus_minutus alignment	Schema
	hide Configure	Antrostomus_carolinensis	Antrostomus_carolinensis alignment	Schema
	hide Configure	Apaloderma_vittatum	Apaloderma_vittatum alignment	Schema
	hide Configure	Aphelocoma_coerulescens	Aphelocoma_coerulescens alignment	Schema
	hide Configure	Aptenodytes_forsteri	Aptenodytes_forsteri alignment	Schema
	hide Configure	Apteryx_australis	Apteryx_australis alignment	Schema
	hide Configure	Apteryx_haastii	Apteryx_haastii alignment	Schema
	hide Configure	Apteryx_owenii	Apteryx_owenii alignment	Schema
	hide Configure	Apteryx_rowi	Apteryx_rowi alignment	Schema
	hide Configure	Aquila_chrysaetos	Aquila_chrysaetos alignment	Schema
	hide Configure	Aramus_guarauna	Aramus_guarauna alignment	Schema
	hide Configure	Ardeotis_kori	Ardeotis_kori alignment	Schema
	hide Configure	Arenaria_interpres	Arenaria_interpres alignment	Schema
	hide Configure	Asarcornis_scutulata	Asarcornis_scutulata alignment	Schema
	hide Configure	Atlantisia_rogersi	Atlantisia_rogersi alignment	Schema
	hide Configure	Atrichornis_clamosus	Atrichornis_clamosus alignment	Schema
	hide Configure	Balaeniceps_rex	Balaeniceps_rex alignment	Schema
	hide Configure	Balearica_regulorum	Balearica_regulorum alignment	Schema
	hide Configure	Baryphthengus_martii	Baryphthengus_martii alignment	Schema
	hide Configure	Bombycilla_garrulus	Bombycilla_garrulus alignment	Schema
	hide Configure	Brachypodius_atriceps	Brachypodius_atriceps alignment	Schema
	hide Configure	Brachypteracias_leptosomus	Brachypteracias_leptosomus alignment	Schema
	hide Configure	Bucco_capensis	Bucco_capensis alignment	Schema
	hide Configure	Buceros_rhinoceros	Buceros_rhinoceros alignment	Schema
	hide Configure	Bucorvus_abyssinicus	Bucorvus_abyssinicus alignment	Schema
	hide Configure	Buphagus_erythrorhynchus	Buphagus_erythrorhynchus alignment	Schema
	hide Configure	Burhinus_bistriatus	Burhinus_bistriatus alignment	Schema
	hide Configure	Cairina_moschata	Cairina_moschata alignment	Schema
	hide Configure	Calcarius_ornatus	Calcarius_ornatus alignment	Schema
	hide Configure	Calidris_pugnax	Calidris_pugnax alignment	Schema
	hide Configure	Callaeas_wilsoni	Callaeas_wilsoni alignment	Schema
	hide Configure	Callipepla_squamata	Callipepla_squamata alignment	Schema
	hide Configure	Caloenas_nicobarica	Caloenas_nicobarica alignment	Schema
	hide Configure	Calonectris_borealis	Calonectris_borealis alignment	Schema
	hide Configure	Calypte_anna	Calypte_anna alignment	Schema
	hide Configure	Calyptomena_viridis	Calyptomena_viridis alignment	Schema
	hide Configure	Campylorhamphus_procurvoides	Campylorhamphus_procurvoides alignment	Schema
	hide Configure	Cardinalis_cardinalis	Cardinalis_cardinalis alignment	Schema
	hide Configure	Cariama_cristata	Cariama_cristata alignment	Schema
	hide Configure	Casuarius_casuarius	Casuarius_casuarius alignment	Schema
	hide Configure	Cathartes_aura	Cathartes_aura alignment	Schema
	hide Configure	Catharus_fuscescens	Catharus_fuscescens alignment	Schema
	hide Configure	Centropus_bengalensis	Centropus_bengalensis alignment	Schema
	hide Configure	Centropus_unirufus	Centropus_unirufus alignment	Schema
	hide Configure	Cephalopterus_ornatus	Cephalopterus_ornatus alignment	Schema
	hide Configure	Cepphus_grylle	Cepphus_grylle alignment	Schema
	hide Configure	Cercotrichas_coryphaeus	Cercotrichas_coryphaeus alignment	Schema
	hide Configure	Certhia_brachydactyla	Certhia_brachydactyla alignment	Schema
	hide Configure	Certhia_familiaris	Certhia_familiaris alignment	Schema
	hide Configure	Cettia_cetti	Cettia_cetti alignment	Schema
	hide Configure	Ceuthmochares_aereus	Ceuthmochares_aereus alignment	Schema
	hide Configure	Ceyx_cyanopectus	Ceyx_cyanopectus alignment	Schema
	hide Configure	Chaetops_frenatus	Chaetops_frenatus alignment	Schema
	hide Configure	Chaetorhynchus_papuensis	Chaetorhynchus_papuensis alignment	Schema
	hide Configure	Chaetura_pelagica	Chaetura_pelagica alignment	Schema
	hide Configure	Charadrius_alexandrinus	Charadrius_alexandrinus alignment	Schema
	hide Configure	Charadrius_vociferus	Charadrius_vociferus alignment	Schema
	hide Configure	Chauna_torquata	Chauna_torquata alignment	Schema
	hide Configure	Chionis_minor	Chionis_minor alignment	Schema
	hide Configure	Chlamydotis_macqueenii	Chlamydotis_macqueenii alignment	Schema
	hide Configure	Chloroceryle_aenea	Chloroceryle_aenea alignment	Schema
	hide Configure	Chlorodrepanis_virens	Chlorodrepanis_virens alignment	Schema
	hide Configure	Chloropsis_cyanopogon	Chloropsis_cyanopogon alignment	Schema
	hide Configure	Chordeiles_acutipennis	Chordeiles_acutipennis alignment	Schema
	hide Configure	Chroicocephalus_maculipennis	Chroicocephalus_maculipennis alignment	Schema
	hide Configure	Chunga_burmeisteri	Chunga_burmeisteri alignment	Schema
	hide Configure	Ciccaba_nigrolineata	Ciccaba_nigrolineata alignment	Schema
	hide Configure	Ciconia_maguari	Ciconia_maguari alignment	Schema
	hide Configure	Cinclus_mexicanus	Cinclus_mexicanus alignment	Schema
	hide Configure	Circaetus_pectoralis	Circaetus_pectoralis alignment	Schema
	hide Configure	Cisticola_juncidis	Cisticola_juncidis alignment	Schema
	hide Configure	Climacteris_rufus	Climacteris_rufus alignment	Schema
	hide Configure	Cnemophilus_loriae	Cnemophilus_loriae alignment	Schema
	hide Configure	Cochlearius_cochlearius	Cochlearius_cochlearius alignment	Schema
	hide Configure	Colinus_virginianus	Colinus_virginianus alignment	Schema
	hide Configure	Colius_striatus	Colius_striatus alignment	Schema
	hide Configure	Columba_livia	Columba_livia alignment	Schema
	hide Configure	Columbina_picui	Columbina_picui alignment	Schema
	hide Configure	Copsychus_sechellarum	Copsychus_sechellarum alignment	Schema
	hide Configure	Corvus_brachyrhynchos	Corvus_brachyrhynchos alignment	Schema
	hide Configure	Corvus_cornix	Corvus_cornix alignment	Schema
	hide Configure	Corvus_moneduloides	Corvus_moneduloides alignment	Schema
	hide Configure	Corythaeola_cristata	Corythaeola_cristata alignment	Schema
	hide Configure	Corythaixoides_concolor	Corythaixoides_concolor alignment	Schema
	hide Configure	Coturnix_japonica	Coturnix_japonica alignment	Schema
	hide Configure	Crotophaga_sulcirostris	Crotophaga_sulcirostris alignment	Schema
	hide Configure	Crypturellus_cinnamomeus	Crypturellus_cinnamomeus alignment	Schema
	hide Configure	Crypturellus_soui	Crypturellus_soui alignment	Schema
	hide Configure	Crypturellus_undulatus	Crypturellus_undulatus alignment	Schema
	hide Configure	Cuculus_canorus	Cuculus_canorus alignment	Schema
	hide Configure	Daphoenositta_chrysoptera	Daphoenositta_chrysoptera alignment	Schema
	hide Configure	Dasyornis_broadbenti	Dasyornis_broadbenti alignment	Schema
	hide Configure	Dicaeum_eximium	Dicaeum_eximium alignment	Schema
	hide Configure	Dicrurus_megarhynchus	Dicrurus_megarhynchus alignment	Schema
	hide Configure	Donacobius_atricapilla	Donacobius_atricapilla alignment	Schema
	hide Configure	Dromaius_novaehollandiae	Dromaius_novaehollandiae alignment	Schema
	hide Configure	Dromas_ardeola	Dromas_ardeola alignment	Schema
	hide Configure	Drymodes_brunneopygia	Drymodes_brunneopygia alignment	Schema
	hide Configure	Dryoscopus_gambensis	Dryoscopus_gambensis alignment	Schema
	hide Configure	Dyaphorophyia_castanea	Dyaphorophyia_castanea alignment	Schema
	hide Configure	Edolisoma_coerulescens	Edolisoma_coerulescens alignment	Schema
	hide Configure	Egretta_garzetta	Egretta_garzetta alignment	Schema
	hide Configure	Elachura_formosa	Elachura_formosa alignment	Schema
	hide Configure	Emberiza_fucata	Emberiza_fucata alignment	Schema
	hide Configure	Eolophus_roseicapillus	Eolophus_roseicapillus alignment	Schema
	hide Configure	Erithacus_rubecula	Erithacus_rubecula alignment	Schema
	hide Configure	Erpornis_zantholeuca	Erpornis_zantholeuca alignment	Schema
	hide Configure	Erythrocercus_mccallii	Erythrocercus_mccallii alignment	Schema
	hide Configure	Eubucco_bourcierii	Eubucco_bourcierii alignment	Schema
	hide Configure	Eudromia_elegans	Eudromia_elegans alignment	Schema
	hide Configure	Eulacestoma_nigropectus	Eulacestoma_nigropectus alignment	Schema
	hide Configure	Eurypyga_helias	Eurypyga_helias alignment	Schema
	hide Configure	Eurystomus_gularis	Eurystomus_gularis alignment	Schema
	hide Configure	Falco_cherrug	Falco_cherrug alignment	Schema
	hide Configure	Falco_peregrinus	Falco_peregrinus alignment	Schema
	hide Configure	Falcunculus_frontatus	Falcunculus_frontatus alignment	Schema
	hide Configure	Ficedula_albicollis	Ficedula_albicollis alignment	Schema
	hide Configure	Formicarius_rufipectus	Formicarius_rufipectus alignment	Schema
	hide Configure	Fregata_magnificens	Fregata_magnificens alignment	Schema
	hide Configure	Fregetta_grallaria	Fregetta_grallaria alignment	Schema
	hide Configure	Fulmarus_glacialis	Fulmarus_glacialis alignment	Schema
	hide Configure	Furnarius_figulus	Furnarius_figulus alignment	Schema
	hide Configure	Galbula_dea	Galbula_dea alignment	Schema
	hide Configure	Gallus_gallus	Gallus_gallus alignment	Schema
	hide Configure	Gavia_stellata	Gavia_stellata alignment	Schema
	hide Configure	Geococcyx_californianus	Geococcyx_californianus alignment	Schema
	hide Configure	Geospiza_fortis	Geospiza_fortis alignment	Schema
	hide Configure	Glareola_pratincola	Glareola_pratincola alignment	Schema
	hide Configure	Glaucidium_brasilianum	Glaucidium_brasilianum alignment	Schema
	hide Configure	Grallaria_varia	Grallaria_varia alignment	Schema
	hide Configure	Grantiella_picta	Grantiella_picta alignment	Schema
	hide Configure	Grus_americana	Grus_americana alignment	Schema
	hide Configure	Gymnorhina_tibicen	Gymnorhina_tibicen alignment	Schema
	hide Configure	Halcyon_senegalensis	Halcyon_senegalensis alignment	Schema
	hide Configure	Haliaeetus_albicilla	Haliaeetus_albicilla alignment	Schema
	hide Configure	Haliaeetus_leucocephalus	Haliaeetus_leucocephalus alignment	Schema
	hide Configure	Heliornis_fulica	Heliornis_fulica alignment	Schema
	hide Configure	Hemignathus_wilsoni	Hemignathus_wilsoni alignment	Schema
	hide Configure	Hemiprocne_comata	Hemiprocne_comata alignment	Schema
	hide Configure	Herpetotheres_cachinnans	Herpetotheres_cachinnans alignment	Schema
	hide Configure	Himantopus_himantopus	Himantopus_himantopus alignment	Schema
	hide Configure	Hippolais_icterina	Hippolais_icterina alignment	Schema
	hide Configure	Hirundo_rustica	Hirundo_rustica alignment	Schema
	hide Configure	Horornis_vulcanius	Horornis_vulcanius alignment	Schema
	hide Configure	Hydrobates_tethys	Hydrobates_tethys alignment	Schema
	hide Configure	Hylia_prasina	Hylia_prasina alignment	Schema
	hide Configure	Hypocryptadius_cinnamomeus	Hypocryptadius_cinnamomeus alignment	Schema
	hide Configure	Ibidorhyncha_struthersii	Ibidorhyncha_struthersii alignment	Schema
	hide Configure	Ifrita_kowaldi	Ifrita_kowaldi alignment	Schema
	hide Configure	Illadopsis_cleaveri	Illadopsis_cleaveri alignment	Schema
	hide Configure	Indicator_maculatus	Indicator_maculatus alignment	Schema
	hide Configure	Irena_cyanogastra	Irena_cyanogastra alignment	Schema
	hide Configure	Jacana_jacana	Jacana_jacana alignment	Schema
	hide Configure	Junco_hyemalis	Junco_hyemalis alignment	Schema
	hide Configure	Lanius_ludovicianus	Lanius_ludovicianus alignment	Schema
	hide Configure	Larus_smithsonianus	Larus_smithsonianus alignment	Schema
	hide Configure	Leiothrix_lutea	Leiothrix_lutea alignment	Schema
	hide Configure	Lepidothrix_coronata	Lepidothrix_coronata alignment	Schema
	hide Configure	Leptocoma_aspasia	Leptocoma_aspasia alignment	Schema
	hide Configure	Leptosomus_discolor	Leptosomus_discolor alignment	Schema
	hide Configure	Leucopsar_rothschildi	Leucopsar_rothschildi alignment	Schema
	hide Configure	Limosa_lapponica	Limosa_lapponica alignment	Schema
	hide Configure	Locustella_ochotensis	Locustella_ochotensis alignment	Schema
	hide Configure	Lonchura_striata	Lonchura_striata alignment	Schema
	hide Configure	Lophotis_ruficrista	Lophotis_ruficrista alignment	Schema
	hide Configure	Loxia_curvirostra	Loxia_curvirostra alignment	Schema
	hide Configure	Loxia_leucoptera	Loxia_leucoptera alignment	Schema
	hide Configure	Machaerirhynchus_nigripectus	Machaerirhynchus_nigripectus alignment	Schema
	hide Configure	Malurus_elegans	Malurus_elegans alignment	Schema
	hide Configure	Manacus_manacus	Manacus_manacus alignment	Schema
	hide Configure	Melanocharis_versteri	Melanocharis_versteri alignment	Schema
	hide Configure	Meleagris_gallopavo	Meleagris_gallopavo alignment	Schema
	hide Configure	Melopsittacus_undulatus	Melopsittacus_undulatus alignment	Schema
	hide Configure	Melospiza_melodia	Melospiza_melodia alignment	Schema
	hide Configure	Menura_novaehollandiae	Menura_novaehollandiae alignment	Schema
	hide Configure	Merops_nubicus	Merops_nubicus alignment	Schema
	hide Configure	Mesembrinibis_cayennensis	Mesembrinibis_cayennensis alignment	Schema
	hide Configure	Mesitornis_unicolor	Mesitornis_unicolor alignment	Schema
	hide Configure	Mionectes_macconnelli	Mionectes_macconnelli alignment	Schema
	hide Configure	Mohoua_ochrocephala	Mohoua_ochrocephala alignment	Schema
	hide Configure	Molothrus_ater	Molothrus_ater alignment	Schema
	hide Configure	Motacilla_alba	Motacilla_alba alignment	Schema
	hide Configure	Myiagra_hebetior	Myiagra_hebetior alignment	Schema
	hide Configure	Mystacornis_crossleyi	Mystacornis_crossleyi alignment	Schema
	hide Configure	Neodrepanis_coruscans	Neodrepanis_coruscans alignment	Schema
	hide Configure	Neopipo_cinnamomea	Neopipo_cinnamomea alignment	Schema
	hide Configure	Nesospiza_acunhae	Nesospiza_acunhae alignment	Schema
	hide Configure	Nestor_notabilis	Nestor_notabilis alignment	Schema
	hide Configure	Nicator_chloris	Nicator_chloris alignment	Schema
	hide Configure	Nipponia_nippon	Nipponia_nippon alignment	Schema
	hide Configure	Nothocercus_julius	Nothocercus_julius alignment	Schema
	hide Configure	Nothocercus_nigrocapillus	Nothocercus_nigrocapillus alignment	Schema
	hide Configure	Nothoprocta_ornata	Nothoprocta_ornata alignment	Schema
	hide Configure	Nothoprocta_pentlandii	Nothoprocta_pentlandii alignment	Schema
	hide Configure	Nothoprocta_perdicaria	Nothoprocta_perdicaria alignment	Schema
	hide Configure	Notiomystis_cincta	Notiomystis_cincta alignment	Schema
	hide Configure	Numida_meleagris	Numida_meleagris alignment	Schema
	hide Configure	Nyctibius_bracteatus	Nyctibius_bracteatus alignment	Schema
	hide Configure	Nyctibius_grandis	Nyctibius_grandis alignment	Schema
	hide Configure	Nycticryphes_semicollaris	Nycticryphes_semicollaris alignment	Schema
	hide Configure	Nyctiprogne_leucopyga	Nyctiprogne_leucopyga alignment	Schema
	hide Configure	Oceanites_oceanicus	Oceanites_oceanicus alignment	Schema
	hide Configure	Odontophorus_gujanensis	Odontophorus_gujanensis alignment	Schema
	hide Configure	Oenanthe_oenanthe	Oenanthe_oenanthe alignment	Schema
	hide Configure	Onychorhynchus_coronatus	Onychorhynchus_coronatus alignment	Schema
	hide Configure	Opisthocomus_hoazin	Opisthocomus_hoazin alignment	Schema
	hide Configure	Oreocharis_arfaki	Oreocharis_arfaki alignment	Schema
	hide Configure	Oreotrochilus_melanogaster	Oreotrochilus_melanogaster alignment	Schema
	hide Configure	Origma_solitaria	Origma_solitaria alignment	Schema
	hide Configure	Oriolus_oriolus	Oriolus_oriolus alignment	Schema
	hide Configure	Orthonyx_spaldingii	Orthonyx_spaldingii alignment	Schema
	hide Configure	Oxylabes_madagascariensis	Oxylabes_madagascariensis alignment	Schema
	hide Configure	Oxyruncus_cristatus	Oxyruncus_cristatus alignment	Schema
	hide Configure	Pachycephala_philippinensis	Pachycephala_philippinensis alignment	Schema
	hide Configure	Pachyramphus_minor	Pachyramphus_minor alignment	Schema
	hide Configure	Pandion_haliaetus	Pandion_haliaetus alignment	Schema
	hide Configure	Panurus_biarmicus	Panurus_biarmicus alignment	Schema
	hide Configure	Paradisaea_raggiana	Paradisaea_raggiana alignment	Schema
	hide Configure	Pardalotus_punctatus	Pardalotus_punctatus alignment	Schema
	hide Configure	Parus_major	Parus_major alignment	Schema
	hide Configure	Passer_domesticus	Passer_domesticus alignment	Schema
	hide Configure	Passerina_amoena	Passerina_amoena alignment	Schema
	hide Configure	Patagioenas_fasciata	Patagioenas_fasciata alignment	Schema
	hide Configure	Pedionomus_torquatus	Pedionomus_torquatus alignment	Schema
	hide Configure	Pelecanoides_urinatrix	Pelecanoides_urinatrix alignment	Schema
	hide Configure	Pelecanus_crispus	Pelecanus_crispus alignment	Schema
	hide Configure	Penelope_pileata	Penelope_pileata alignment	Schema
	hide Configure	Peucedramus_taeniatus	Peucedramus_taeniatus alignment	Schema
	hide Configure	Phaethon_lepturus	Phaethon_lepturus alignment	Schema
	hide Configure	Phaetusa_simplex	Phaetusa_simplex alignment	Schema
	hide Configure	Phainopepla_nitens	Phainopepla_nitens alignment	Schema
	hide Configure	Phalacrocorax_auritus	Phalacrocorax_auritus alignment	Schema
	hide Configure	Phalacrocorax_brasilianus	Phalacrocorax_brasilianus alignment	Schema
	hide Configure	Phalacrocorax_carbo	Phalacrocorax_carbo alignment	Schema
	hide Configure	Phalacrocorax_harrisi	Phalacrocorax_harrisi alignment	Schema
	hide Configure	Phalacrocorax_pelagicus	Phalacrocorax_pelagicus alignment	Schema
	hide Configure	Phasianus_colchicus	Phasianus_colchicus alignment	Schema
	hide Configure	Pheucticus_melanocephalus	Pheucticus_melanocephalus alignment	Schema
	hide Configure	Phoenicopterus_ruber	Phoenicopterus_ruber alignment	Schema
	hide Configure	Phylloscopus_trochilus	Phylloscopus_trochilus alignment	Schema
	hide Configure	Piaya_cayana	Piaya_cayana alignment	Schema
	hide Configure	Picathartes_gymnocephalus	Picathartes_gymnocephalus alignment	Schema
	hide Configure	Picoides_pubescens	Picoides_pubescens alignment	Schema
	hide Configure	Piprites_chloris	Piprites_chloris alignment	Schema
	hide Configure	Pitta_sordida	Pitta_sordida alignment	Schema
	hide Configure	Ploceus_nigricollis	Ploceus_nigricollis alignment	Schema
	hide Configure	Pluvianellus_socialis	Pluvianellus_socialis alignment	Schema
	hide Configure	Podargus_strigoides	Podargus_strigoides alignment	Schema
	hide Configure	Podiceps_cristatus	Podiceps_cristatus alignment	Schema
	hide Configure	Podilymbus_podiceps	Podilymbus_podiceps alignment	Schema
	hide Configure	Poecile_atricapillus	Poecile_atricapillus alignment	Schema
	hide Configure	Polioptila_caerulea	Polioptila_caerulea alignment	Schema
	hide Configure	Pomatorhinus_ruficollis	Pomatorhinus_ruficollis alignment	Schema
	hide Configure	Pomatostomus_ruficeps	Pomatostomus_ruficeps alignment	Schema
	hide Configure	Probosciger_aterrimus	Probosciger_aterrimus alignment	Schema
	hide Configure	Promerops_cafer	Promerops_cafer alignment	Schema
	hide Configure	Prunella_fulvescens	Prunella_fulvescens alignment	Schema
	hide Configure	Prunella_himalayana	Prunella_himalayana alignment	Schema
	hide Configure	Pseudopodoces_humilis	Pseudopodoces_humilis alignment	Schema
	hide Configure	Psilopogon_haemacephalus	Psilopogon_haemacephalus alignment	Schema
	hide Configure	Psophia_crepitans	Psophia_crepitans alignment	Schema
	hide Configure	Pterocles_burchelli	Pterocles_burchelli alignment	Schema
	hide Configure	Pterocles_gutturalis	Pterocles_gutturalis alignment	Schema
	hide Configure	Pteruthius_melanotis	Pteruthius_melanotis alignment	Schema
	hide Configure	Ptilonorhynchus_violaceus	Ptilonorhynchus_violaceus alignment	Schema
	hide Configure	Ptilorrhoa_leucosticta	Ptilorrhoa_leucosticta alignment	Schema
	hide Configure	Pycnonotus_jocosus	Pycnonotus_jocosus alignment	Schema
	hide Configure	Pygoscelis_adeliae	Pygoscelis_adeliae alignment	Schema
	hide Configure	Quiscalus_mexicanus	Quiscalus_mexicanus alignment	Schema
	hide Configure	Ramphastos_sulfuratus	Ramphastos_sulfuratus alignment	Schema
	hide Configure	Regulus_satrapa	Regulus_satrapa alignment	Schema
	hide Configure	Rhabdornis_inornatus	Rhabdornis_inornatus alignment	Schema
	hide Configure	Rhadina_sibilatrix	Rhadina_sibilatrix alignment	Schema
	hide Configure	Rhagologus_leucostigma	Rhagologus_leucostigma alignment	Schema
	hide Configure	Rhea_americana	Rhea_americana alignment	Schema
	hide Configure	Rhea_pennata	Rhea_pennata alignment	Schema
	hide Configure	Rhegmatorhina_hoffmannsi	Rhegmatorhina_hoffmannsi alignment	Schema
	hide Configure	Rhinopomastus_cyanomelas	Rhinopomastus_cyanomelas alignment	Schema
	hide Configure	Rhinoptilus_africanus	Rhinoptilus_africanus alignment	Schema
	hide Configure	Rhipidura_dahli	Rhipidura_dahli alignment	Schema
	hide Configure	Rhodinocichla_rosea	Rhodinocichla_rosea alignment	Schema
	hide Configure	Rhynochetos_jubatus	Rhynochetos_jubatus alignment	Schema
	hide Configure	Rissa_tridactyla	Rissa_tridactyla alignment	Schema
	hide Configure	Rostratula_benghalensis	Rostratula_benghalensis alignment	Schema
	hide Configure	Rynchops_niger	Rynchops_niger alignment	Schema
	hide Configure	Sagittarius_serpentarius	Sagittarius_serpentarius alignment	Schema
	hide Configure	Sakesphorus_luctuosus	Sakesphorus_luctuosus alignment	Schema
	hide Configure	Sapayoa_aenigma	Sapayoa_aenigma alignment	Schema
	hide Configure	Saxicola_maurus	Saxicola_maurus alignment	Schema
	hide Configure	Sclerurus_mexicanus	Sclerurus_mexicanus alignment	Schema
	hide Configure	Scopus_umbretta	Scopus_umbretta alignment	Schema
	hide Configure	Scytalopus_superciliaris	Scytalopus_superciliaris alignment	Schema
	hide Configure	Semnornis_frantzii	Semnornis_frantzii alignment	Schema
	hide Configure	Serilophus_lunatus	Serilophus_lunatus alignment	Schema
	hide Configure	Serinus_canaria	Serinus_canaria alignment	Schema
	hide Configure	Setophaga_coronata	Setophaga_coronata alignment	Schema
	hide Configure	Setophaga_kirtlandii	Setophaga_kirtlandii alignment	Schema
	hide Configure	Sinosuthora_webbiana	Sinosuthora_webbiana alignment	Schema
	hide Configure	Sitta_europaea	Sitta_europaea alignment	Schema
	hide Configure	Smithornis_capensis	Smithornis_capensis alignment	Schema
	hide Configure	Spizaetus_tyrannus	Spizaetus_tyrannus alignment	Schema
	hide Configure	Spizella_passerina	Spizella_passerina alignment	Schema
	hide Configure	Sporophila_hypoxantha	Sporophila_hypoxantha alignment	Schema
	hide Configure	Steatornis_caripensis	Steatornis_caripensis alignment	Schema
	hide Configure	Stercorarius_parasiticus	Stercorarius_parasiticus alignment	Schema
	hide Configure	Sterrhoptilus_dennistouni	Sterrhoptilus_dennistouni alignment	Schema
	hide Configure	Strix_occidentalis	Strix_occidentalis alignment	Schema
	hide Configure	Struthidea_cinerea	Struthidea_cinerea alignment	Schema
	hide Configure	Struthio_camelus	Struthio_camelus alignment	Schema
	hide Configure	Sturnus_vulgaris	Sturnus_vulgaris alignment	Schema
	hide Configure	Sula_dactylatra	Sula_dactylatra alignment	Schema
	hide Configure	Sylvia_atricapilla	Sylvia_atricapilla alignment	Schema
	hide Configure	Sylvia_borin	Sylvia_borin alignment	Schema
	hide Configure	Sylvietta_virens	Sylvietta_virens alignment	Schema
	hide Configure	Syrrhaptes_paradoxus	Syrrhaptes_paradoxus alignment	Schema
	hide Configure	Tachuris_rubrigastra	Tachuris_rubrigastra alignment	Schema
	hide Configure	Taeniopygia_guttata	Taeniopygia_guttata alignment	Schema
	hide Configure	Tauraco_erythrolophus	Tauraco_erythrolophus alignment	Schema
	hide Configure	Thalassarche_chlororhynchos	Thalassarche_chlororhynchos alignment	Schema
	hide Configure	Thinocorus_orbignyianus	Thinocorus_orbignyianus alignment	Schema
	hide Configure	Thryothorus_ludovicianus	Thryothorus_ludovicianus alignment	Schema
	hide Configure	Tichodroma_muraria	Tichodroma_muraria alignment	Schema
	hide Configure	Tinamus_guttatus	Tinamus_guttatus alignment	Schema
	hide Configure	Todus_mexicanus	Todus_mexicanus alignment	Schema
	hide Configure	Toxostoma_redivivum	Toxostoma_redivivum alignment	Schema
	hide Configure	Tricholaema_leucomelas	Tricholaema_leucomelas alignment	Schema
	hide Configure	Trogon_melanurus	Trogon_melanurus alignment	Schema
	hide Configure	Turnix_velox	Turnix_velox alignment	Schema
	hide Configure	Tympanuchus_cupido	Tympanuchus_cupido alignment	Schema
	hide Configure	Tyrannus_savana	Tyrannus_savana alignment	Schema
	hide Configure	Tyto_alba	Tyto_alba alignment	Schema
	hide Configure	Upupa_epops	Upupa_epops alignment	Schema
	hide Configure	Uria_aalge	Uria_aalge alignment	Schema
	hide Configure	Uria_lomvia	Uria_lomvia alignment	Schema
	hide Configure	Urocolius_indicus	Urocolius_indicus alignment	Schema
	hide Configure	Urocynchramus_pylzowi	Urocynchramus_pylzowi alignment	Schema
	hide Configure	Vidua_chalybeata	Vidua_chalybeata alignment	Schema
	hide Configure	Vidua_macroura	Vidua_macroura alignment	Schema
	hide Configure	Vireo_altiloquus	Vireo_altiloquus alignment	Schema
	hide Configure	Xiphorhynchus_elegans	Xiphorhynchus_elegans alignment	Schema
	hide Configure	Zapornia_atra	Zapornia_atra alignment	Schema
	hide Configure	Zonotrichia_albicollis	Zonotrichia_albicollis alignment	Schema
	hide Configure	Zosterops_hypoxanthus	Zosterops_hypoxanthus alignment	Schema
	hide Configure	Zosterops_lateralis	Zosterops_lateralis alignment	Schema

Bird 10K Alignment Tracks

Description

The Bird 10K 363-way alignment is available as two tracks: a MAF format track (using a bigMaf file), only available on the Gallus_gallus (chicken) browser, as well as snake tracks (using a HAL(Hickey et al. 2013) file) that are available on all genomes.

Note that the snake tracks need to load much more data and are thus significantly slower to load than the MAF tracks. We suggest using no more than five snake tracks at a time, and viewing them in regions of 100kb or less to avoid browser timeouts.

Methods

The Bird 10K consortium has released 268 newly sequenced avian genomes. These were combined with other publicly available genomes to create a set of 363 bird genomes used for the alignment. These genomes were aligned using Cactus, a multiple whole-genome alignment program(Paten et al. 2011).

The raw alignment (in HAL(Hickey et al. 2013) format) is available here. Please be aware that the file is hundreds of gigabytes in size, and bandwidth costs for hosting this file are significant.

Credits

The Bird 10K consortium provided the assemblies and generated the alignment. Please contact the corresponding authors for the data release, Guojie Zhang and Benedict Paten with questions.

References

Hickey, G., B. Paten, D. Earl, D. Zerbino, and D. Haussler. 2013. “HAL: a hierarchical format for storing and analyzing multiple genome alignments.” Bioinformatics 29 (10): 1341–2. https://doi.org/10.1093/bioinformatics/btt128.

Paten, B., D. Earl, N. Nguyen, M. Diekhans, D. Zerbino, and D. Haussler. 2011. “Cactus: Algorithms for genome multiple sequence alignment.” Genome Res. 21 (9): 1512–28.