Tabula Sapiens Tabula Details Track Settings
 
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Track collection: Tabula Sapiens single cell RNA data from many tissues

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color cluster count tissue subtissue cell_class sex donor assay
   
adipose tissue/marrow/immune/Smart-se... 173 adipose tissue marrow immune male TSP10 Smart-seq2
   
adipose tissue/marrow/endothelial/10x... 738 adipose tissue marrow endothelial male TSP10 10x 3' v3
   
adipose tissue/marrow/endothelial/10x... 1214 adipose tissue marrow endothelial male TSP14 10x 3' v3
   
adipose tissue/marrow/endothelial/Sma... 12 adipose tissue marrow endothelial male TSP10 Smart-seq2
   
adipose tissue/marrow/stromal/10x 3' ... 3963 adipose tissue marrow stromal male TSP10 10x 3' v3
   
adipose tissue/marrow/stromal/10x 3' ... 1551 adipose tissue marrow stromal male TSP14 10x 3' v3
   
adipose tissue/marrow/stromal/Smart-s... 13 adipose tissue marrow stromal male TSP10 Smart-seq2
   
adipose tissue/marrow/immune/10x 3' v... 1489 adipose tissue marrow immune male TSP10 10x 3' v3
   
adipose tissue/marrow/immune/10x 3' v... 1218 adipose tissue marrow immune male TSP14 10x 3' v3
   
adipose tissue/subcutaneous/immune/Sm... 319 adipose tissue subcutaneous immune male TSP10 Smart-seq2
   
adipose tissue/subcutaneous/endotheli... 1051 adipose tissue subcutaneous endothelial male TSP10 10x 3' v3
   
adipose tissue/subcutaneous/endotheli... 662 adipose tissue subcutaneous endothelial male TSP14 10x 3' v3
   
adipose tissue/subcutaneous/endotheli... 71 adipose tissue subcutaneous endothelial male TSP10 Smart-seq2
   
adipose tissue/subcutaneous/stromal/1... 2726 adipose tissue subcutaneous stromal male TSP10 10x 3' v3
   
adipose tissue/subcutaneous/stromal/1... 2452 adipose tissue subcutaneous stromal male TSP14 10x 3' v3
   
adipose tissue/subcutaneous/stromal/S... 63 adipose tissue subcutaneous stromal male TSP10 Smart-seq2
   
adipose tissue/subcutaneous/immune/10... 1975 adipose tissue subcutaneous immune male TSP10 10x 3' v3
   
adipose tissue/subcutaneous/immune/10... 573 adipose tissue subcutaneous immune male TSP14 10x 3' v3
   
bladder organ//immune/10x 3' v3/femal... 5510 bladder organ immune female TSP2 10x 3' v3
   
bladder organ//immune/Smart-seq2/fema... 262 bladder organ immune female TSP1 Smart-seq2
   
bladder organ//immune/Smart-seq2/fema... 199 bladder organ immune female TSP2 Smart-seq2
   
bladder organ//epithelial/10x 3' v3/f... 1784 bladder organ epithelial female TSP1 10x 3' v3
   
bladder organ//epithelial/10x 3' v3/f... 862 bladder organ epithelial female TSP2 10x 3' v3
   
bladder organ//epithelial/Smart-seq2/... 133 bladder organ epithelial female TSP1 Smart-seq2
   
bladder organ//epithelial/Smart-seq2/... 94 bladder organ epithelial female TSP2 Smart-seq2
   
bladder organ//endothelial/10x 3' v3/... 194 bladder organ endothelial female TSP1 10x 3' v3
   
bladder organ//endothelial/10x 3' v3/... 124 bladder organ endothelial female TSP2 10x 3' v3
   
bladder organ//endothelial/Smart-seq2... 87 bladder organ endothelial female TSP1 Smart-seq2
   
bladder organ//stromal/10x 3' v3/fema... 4627 bladder organ stromal female TSP1 10x 3' v3
   
bladder organ//stromal/10x 3' v3/fema... 2838 bladder organ stromal female TSP2 10x 3' v3
   
bladder organ//stromal/Smart-seq2/fem... 232 bladder organ stromal female TSP1 Smart-seq2
   
bladder organ//stromal/Smart-seq2/fem... 154 bladder organ stromal female TSP2 Smart-seq2
   
bladder organ//immune/10x 3' v3/femal... 4417 bladder organ immune female TSP1 10x 3' v3
   
blood//immune/10x 3' v3/female/TSP7 17218 blood immune female TSP7 10x 3' v3
   
blood//immune/10x 3' v3/male/TSP8 1974 blood immune male TSP8 10x 3' v3
   
blood//immune/10x 3' v3/male/TSP10 5007 blood immune male TSP10 10x 3' v3
   
blood//immune/10x 3' v3/male/TSP14 9962 blood immune male TSP14 10x 3' v3
   
blood//immune/Smart-seq2/female/TSP7 613 blood immune female TSP7 Smart-seq2
   
blood//immune/10x 3' v3/female/TSP1 3665 blood immune female TSP1 10x 3' v3
   
blood//immune/10x 3' v3/female/TSP2 10312 blood immune female TSP2 10x 3' v3
   
blood//immune/Smart-seq2/female/TSP1 274 blood immune female TSP1 Smart-seq2
   
blood//immune/Smart-seq2/female/TSP2 1090 blood immune female TSP2 Smart-seq2
   
bone marrow//immune/10x 3' v3/male/TSP11 1456 bone marrow immune male TSP11 10x 3' v3
   
bone marrow//immune/10x 3' v3/male/TSP14 5853 bone marrow immune male TSP14 10x 3' v3
   
bone marrow//immune/Smart-seq2/female... 301 bone marrow immune female TSP2 Smart-seq2
   
bone marrow//immune/Smart-seq2/male/T... 1032 bone marrow immune male TSP11 Smart-seq2
   
bone marrow/vertebral body/immune/10x... 2698 bone marrow vertebral body immune female TSP2 10x 3' v3
   
bone marrow/vertebral body/immune/Sma... 419 bone marrow vertebral body immune female TSP2 Smart-seq2
   
bone marrow/vertebral body/immune/Sma... 538 bone marrow vertebral body immune male TSP13 Smart-seq2
   
eye//immune/10x 3' v3/female/TSP5 301 eye immune female TSP5 10x 3' v3
   
eye/conjunctiva/epithelial/10x 3' v3/... 2084 eye conjunctiva epithelial female TSP3 10x 3' v3
   
eye//epithelial/10x 3' v3/female/TSP3 75 eye epithelial female TSP3 10x 3' v3
   
eye//epithelial/10x 3' v3/female/TSP5 1944 eye epithelial female TSP5 10x 3' v3
   
eye/cornea-etc/immune/10x 3' v3/male/... 80 eye cornea-etc immune male TSP15 10x 3' v3
   
eye/cornea-etc/epithelial/10x 3' v3/m... 2940 eye cornea-etc epithelial male TSP15 10x 3' v3
   
eye/cornea-etc/endothelial/10x 3' v3/... 173 eye cornea-etc endothelial male TSP15 10x 3' v3
   
eye/cornea-etc/stromal/10x 3' v3/male... 312 eye cornea-etc stromal male TSP15 10x 3' v3
   
eye//endothelial/10x 3' v3/female/TSP5 25 eye endothelial female TSP5 10x 3' v3
   
eye//stromal/10x 3' v3/female/TSP5 189 eye stromal female TSP5 10x 3' v3
   
eye/lacrimal gland/immune/Smart-seq2/... 127 eye lacrimal gland immune female TSP3 Smart-seq2
   
eye/lacrimal gland/epithelial/Smart-s... 5 eye lacrimal gland epithelial female TSP3 Smart-seq2
   
eye/lacrimal gland/endothelial/Smart-... 4 eye lacrimal gland endothelial female TSP3 Smart-seq2
   
eye/lacrimal gland/stromal/Smart-seq2... 112 eye lacrimal gland stromal female TSP3 Smart-seq2
   
eye//immune/10x 3' v3/female/TSP3 1 eye immune female TSP3 10x 3' v3
   
eye/neuroretina-etc/immune/10x 3' v3/... 34 eye neuroretina-etc immune male TSP15 10x 3' v3
   
eye/neuroretina-etc/epithelial/10x 3'... 325 eye neuroretina-etc epithelial male TSP15 10x 3' v3
   
eye/neuroretina-etc/stromal/10x 3' v3... 316 eye neuroretina-etc stromal male TSP15 10x 3' v3
   
eye/no cornea/immune/Smart-seq2/femal... 21 eye no cornea immune female TSP3 Smart-seq2
   
eye/no cornea/epithelial/Smart-seq2/f... 11 eye no cornea epithelial female TSP3 Smart-seq2
   
eye/no cornea/stromal/Smart-seq2/fema... 3 eye no cornea stromal female TSP3 Smart-seq2
   
eye/no cornea/endothelial/Smart-seq2/... 1 eye no cornea endothelial female TSP3 Smart-seq2
   
eye/orbital/immune/10x 3' v3/female/TSP3 1 eye orbital immune female TSP3 10x 3' v3
   
eye/orbital/endothelial/10x 3' v3/fem... 1 eye orbital endothelial female TSP3 10x 3' v3
   
eye/sclera-etc/immune/10x 3' v3/male/... 327 eye sclera-etc immune male TSP15 10x 3' v3
   
eye/sclera-etc/epithelial/10x 3' v3/m... 471 eye sclera-etc epithelial male TSP15 10x 3' v3
   
eye/sclera-etc/endothelial/10x 3' v3/... 367 eye sclera-etc endothelial male TSP15 10x 3' v3
   
eye/sclera-etc/stromal/10x 3' v3/male... 266 eye sclera-etc stromal male TSP15 10x 3' v3
   
eye//stromal/10x 3' v3/female/TSP3 1 eye stromal female TSP3 10x 3' v3
   
eye/whole/immune/Smart-seq2/female/TSP5 102 eye whole immune female TSP5 Smart-seq2
   
eye/whole/epithelial/Smart-seq2/femal... 22 eye whole epithelial female TSP5 Smart-seq2
   
eye/whole/stromal/Smart-seq2/female/TSP5 9 eye whole stromal female TSP5 Smart-seq2
   
heart/atria/endothelial/10x 3' v3/mal... 1797 heart atria endothelial male TSP12 10x 3' v3
   
heart/atria/endothelial/Smart-seq2/ma... 63 heart atria endothelial male TSP12 Smart-seq2
   
heart/atria/stromal/10x 3' v3/male/TSP12 5502 heart atria stromal male TSP12 10x 3' v3
   
heart/atria/stromal/Smart-seq2/male/T... 92 heart atria stromal male TSP12 Smart-seq2
   
heart/atria/epithelial/10x 3' v3/male... 766 heart atria epithelial male TSP12 10x 3' v3
   
heart/atria/epithelial/Smart-seq2/mal... 21 heart atria epithelial male TSP12 Smart-seq2
   
heart/atria/immune/10x 3' v3/male/TSP12 25 heart atria immune male TSP12 10x 3' v3
   
heart/atria/immune/Smart-seq2/male/TSP12 13 heart atria immune male TSP12 Smart-seq2
   
heart/ventricle/endothelial/10x 3' v3... 760 heart ventricle endothelial male TSP12 10x 3' v3
   
heart/ventricle/endothelial/Smart-seq... 45 heart ventricle endothelial male TSP12 Smart-seq2
   
heart/ventricle/stromal/10x 3' v3/mal... 2081 heart ventricle stromal male TSP12 10x 3' v3
   
heart/ventricle/stromal/Smart-seq2/ma... 2 heart ventricle stromal male TSP12 Smart-seq2
   
heart/ventricle/epithelial/10x 3' v3/... 274 heart ventricle epithelial male TSP12 10x 3' v3
   
heart/ventricle/epithelial/Smart-seq2... 28 heart ventricle epithelial male TSP12 Smart-seq2
   
heart/ventricle/immune/10x 3' v3/male... 23 heart ventricle immune male TSP12 10x 3' v3
   
heart/ventricle/immune/Smart-seq2/mal... 13 heart ventricle immune male TSP12 Smart-seq2
   
kidney//immune/10x 3' v3/female/TSP2 1018 kidney immune female TSP2 10x 3' v3
   
kidney//immune/Smart-seq2/female/TSP2 197 kidney immune female TSP2 Smart-seq2
   
kidney//endothelial/10x 3' v3/female/... 95 kidney endothelial female TSP2 10x 3' v3
   
kidney//epithelial/10x 3' v3/female/TSP2 8158 kidney epithelial female TSP2 10x 3' v3
   
kidney//epithelial/Smart-seq2/female/... 173 kidney epithelial female TSP2 Smart-seq2
   
large intestine/distal/immune/10x 3' ... 37 large intestine distal immune female TSP2 10x 3' v3
   
large intestine/distal/immune/10x 3' ... 4200 large intestine distal immune male TSP14 10x 3' v3
   
large intestine/distal/epithelial/10x... 911 large intestine distal epithelial female TSP2 10x 3' v3
   
large intestine/distal/epithelial/10x... 2884 large intestine distal epithelial male TSP14 10x 3' v3
   
large intestine/distal/stromal/10x 3'... 69 large intestine distal stromal female TSP2 10x 3' v3
   
large intestine/distal/stromal/10x 3'... 506 large intestine distal stromal male TSP14 10x 3' v3
   
large intestine/distal/endothelial/10... 14 large intestine distal endothelial female TSP2 10x 3' v3
   
large intestine/distal/endothelial/10... 24 large intestine distal endothelial male TSP14 10x 3' v3
   
large intestine//epithelial/Smart-seq... 324 large intestine epithelial female TSP2 Smart-seq2
   
large intestine//stromal/Smart-seq2/f... 7 large intestine stromal female TSP2 Smart-seq2
   
large intestine//immune/Smart-seq2/fe... 4 large intestine immune female TSP2 Smart-seq2
   
large intestine/proximal/immune/10x 3... 32 large intestine proximal immune female TSP2 10x 3' v3
   
large intestine/proximal/immune/10x 3... 2179 large intestine proximal immune male TSP14 10x 3' v3
   
large intestine/proximal/immune/Smart... 2 large intestine proximal immune female TSP2 Smart-seq2
   
large intestine/proximal/epithelial/1... 704 large intestine proximal epithelial female TSP2 10x 3' v3
   
large intestine/proximal/epithelial/1... 1293 large intestine proximal epithelial male TSP14 10x 3' v3
   
large intestine/proximal/epithelial/S... 104 large intestine proximal epithelial female TSP2 Smart-seq2
   
large intestine/proximal/stromal/10x ... 24 large intestine proximal stromal female TSP2 10x 3' v3
   
large intestine/proximal/stromal/10x ... 346 large intestine proximal stromal male TSP14 10x 3' v3
   
large intestine/proximal/stromal/Smar... 1 large intestine proximal stromal female TSP2 Smart-seq2
   
large intestine/proximal/endothelial/... 8 large intestine proximal endothelial female TSP2 10x 3' v3
   
large intestine/proximal/endothelial/... 7 large intestine proximal endothelial male TSP14 10x 3' v3
   
liver//endothelial/10x 3' v3/male/TSP14 347 liver endothelial male TSP14 10x 3' v3
   
liver//endothelial/10x 3' v3/male/TSP6 330 liver endothelial male TSP6 10x 3' v3
   
liver//endothelial/Smart-seq2/male/TSP6 11 liver endothelial male TSP6 Smart-seq2
   
liver//immune/10x 3' v3/male/TSP14 272 liver immune male TSP14 10x 3' v3
   
liver//immune/Smart-seq2/male/TSP6 187 liver immune male TSP6 Smart-seq2
   
liver//stromal/10x 3' v3/male/TSP6 66 liver stromal male TSP6 10x 3' v3
   
liver//stromal/10x 3' v3/male/TSP14 6 liver stromal male TSP14 10x 3' v3
   
liver//stromal/Smart-seq2/male/TSP6 4 liver stromal male TSP6 Smart-seq2
   
liver//epithelial/10x 3' v3/male/TSP6 67 liver epithelial male TSP6 10x 3' v3
   
liver//epithelial/10x 3' v3/male/TSP14 1522 liver epithelial male TSP14 10x 3' v3
   
liver//epithelial/Smart-seq2/male/TSP6 11 liver epithelial male TSP6 Smart-seq2
   
liver//immune/10x 3' v3/male/TSP6 2184 liver immune male TSP6 10x 3' v3
   
lung//stromal/10x 3' v3/female/TSP1 197 lung stromal female TSP1 10x 3' v3
   
lung//stromal/Smart-seq2/female/TSP2 2 lung stromal female TSP2 Smart-seq2
   
lung//immune/10x 3' v3/female/TSP1 10091 lung immune female TSP1 10x 3' v3
   
lung//epithelial/10x 3' v3/female/TSP1 1859 lung epithelial female TSP1 10x 3' v3
   
lung//epithelial/Smart-seq2/female/TSP2 367 lung epithelial female TSP2 Smart-seq2
   
lung//endothelial/10x 3' v3/female/TSP1 362 lung endothelial female TSP1 10x 3' v3
   
lung//endothelial/Smart-seq2/female/TSP2 96 lung endothelial female TSP2 Smart-seq2
   
lung//immune/Smart-seq2/female/TSP2 9 lung immune female TSP2 Smart-seq2
   
lung/distal/stromal/10x 3' v3/male/TSP14 11 lung distal stromal male TSP14 10x 3' v3
   
lung/distal/endothelial/10x 3' v3/mal... 14 lung distal endothelial male TSP14 10x 3' v3
   
lung/distal/immune/10x 3' v3/male/TSP14 197 lung distal immune male TSP14 10x 3' v3
   
lung/distal/epithelial/10x 3' v3/male... 868 lung distal epithelial male TSP14 10x 3' v3
   
lung//immune/10x 3' v3/male/TSP14 1 lung immune male TSP14 10x 3' v3
   
lung/medial-distal/stromal/Smart-seq2... 70 lung medial-distal stromal female TSP1 Smart-seq2
   
lung/medial-distal/immune/Smart-seq2/... 103 lung medial-distal immune female TSP1 Smart-seq2
   
lung/medial-distal/epithelial/Smart-s... 85 lung medial-distal epithelial female TSP1 Smart-seq2
   
lung/medial-distal/endothelial/Smart-... 49 lung medial-distal endothelial female TSP1 Smart-seq2
   
lung/neuron/stromal/Smart-seq2/female... 275 lung neuron stromal female TSP2 Smart-seq2
   
lung/neuron/immune/Smart-seq2/female/... 8 lung neuron immune female TSP2 Smart-seq2
   
lung/neuron/epithelial/Smart-seq2/fem... 9 lung neuron epithelial female TSP2 Smart-seq2
   
lung/prox-medial-distal/stromal/10x 3... 439 lung prox-medial-distal stromal female TSP2 10x 3' v3
   
lung/prox-medial-distal/stromal/Smart... 3 lung prox-medial-distal stromal female TSP2 Smart-seq2
   
lung/prox-medial-distal/immune/10x 3'... 6905 lung prox-medial-distal immune female TSP2 10x 3' v3
   
lung/prox-medial-distal/epithelial/10... 7722 lung prox-medial-distal epithelial female TSP2 10x 3' v3
   
lung/prox-medial-distal/epithelial/Sm... 6 lung prox-medial-distal epithelial female TSP2 Smart-seq2
   
lung/prox-medial-distal/immune/Smart-... 123 lung prox-medial-distal immune female TSP2 Smart-seq2
   
lung/prox-medial-distal/endothelial/1... 2167 lung prox-medial-distal endothelial female TSP2 10x 3' v3
   
lung/prox-medial-distal/endothelial/S... 3 lung prox-medial-distal endothelial female TSP2 Smart-seq2
   
lung/proximal/stromal/10x 3' v3/male/... 37 lung proximal stromal male TSP14 10x 3' v3
   
lung/proximal/stromal/Smart-seq2/fema... 82 lung proximal stromal female TSP1 Smart-seq2
   
lung/proximal/immune/Smart-seq2/femal... 138 lung proximal immune female TSP1 Smart-seq2
   
lung/proximal/epithelial/Smart-seq2/f... 78 lung proximal epithelial female TSP1 Smart-seq2
   
lung/proximal/endothelial/10x 3' v3/m... 33 lung proximal endothelial male TSP14 10x 3' v3
   
lung/proximal/endothelial/Smart-seq2/... 84 lung proximal endothelial female TSP1 Smart-seq2
   
lung/proximal/immune/10x 3' v3/male/T... 183 lung proximal immune male TSP14 10x 3' v3
   
lung/proximal/epithelial/10x 3' v3/ma... 1927 lung proximal epithelial male TSP14 10x 3' v3
   
lung//epithelial/10x 3' v3/male/TSP14 1077 lung epithelial male TSP14 10x 3' v3
   
lung//stromal/10x 3' v3/male/TSP14 2 lung stromal male TSP14 10x 3' v3
   
lymph node//immune/10x 3' v3/male/TSP14 30184 lymph node immune male TSP14 10x 3' v3
   
lymph node//immune/10x 3' v3/female/TSP2 8536 lymph node immune female TSP2 10x 3' v3
   
lymph node//immune/Smart-seq2/female/... 914 lymph node immune female TSP2 Smart-seq2
   
lymph node//endothelial/10x 3' v3/fem... 9 lymph node endothelial female TSP2 10x 3' v3
   
lymph node//endothelial/10x 3' v3/mal... 137 lymph node endothelial male TSP14 10x 3' v3
   
lymph node//endothelial/Smart-seq2/fe... 6 lymph node endothelial female TSP2 Smart-seq2
   
lymph node/inguinal/immune/10x 3' v3/... 7736 lymph node inguinal immune female TSP7 10x 3' v3
   
lymph node/inguinal/immune/Smart-seq2... 642 lymph node inguinal immune female TSP7 Smart-seq2
   
lymph node/inguinal/immune/Smart-seq2... 302 lymph node inguinal immune female TSP2 Smart-seq2
   
lymph node/inguinal/endothelial/10x 3... 2 lymph node inguinal endothelial female TSP7 10x 3' v3
   
lymph node/inguinal/endothelial/Smart... 1 lymph node inguinal endothelial female TSP7 Smart-seq2
   
lymph node//stromal/10x 3' v3/male/TSP14 106 lymph node stromal male TSP14 10x 3' v3
   
lymph node/supradiaphragmatic/immune/... 4174 lymph node supradiaphragmatic immune female TSP7 10x 3' v3
   
lymph node/supradiaphragmatic/immune/... 518 lymph node supradiaphragmatic immune female TSP7 Smart-seq2
   
lymph node/supradiaphragmatic/endothe... 2 lymph node supradiaphragmatic endothelial female TSP7 10x 3' v3
   
lymph node/supradiaphragmatic/endothe... 1 lymph node supradiaphragmatic endothelial female TSP7 Smart-seq2
   
lymph node/supradiaphragmatic/stromal... 5 lymph node supradiaphragmatic stromal female TSP7 10x 3' v3
   
mammary gland//immune/10x 3' v3/femal... 2589 mammary gland immune female TSP4 10x 3' v3
   
mammary gland//immune/Smart-seq2/fema... 226 mammary gland immune female TSP4 Smart-seq2
   
mammary gland//epithelial/10x 3' v3/f... 5630 mammary gland epithelial female TSP4 10x 3' v3
   
mammary gland//epithelial/Smart-seq2/... 224 mammary gland epithelial female TSP4 Smart-seq2
   
mammary gland//endothelial/10x 3' v3/... 442 mammary gland endothelial female TSP4 10x 3' v3
   
mammary gland//endothelial/Smart-seq2... 21 mammary gland endothelial female TSP4 Smart-seq2
   
mammary gland//stromal/10x 3' v3/fema... 2134 mammary gland stromal female TSP4 10x 3' v3
   
mammary gland//stromal/Smart-seq2/fem... 109 mammary gland stromal female TSP4 Smart-seq2
   
muscle tissue/abdomen/endothelial/10x... 541 muscle tissue abdomen endothelial male TSP14 10x 3' v3
   
muscle tissue/abdomen/immune/10x 3' v... 242 muscle tissue abdomen immune male TSP14 10x 3' v3
   
muscle tissue/abdomen/stromal/10x 3' ... 5359 muscle tissue abdomen stromal male TSP14 10x 3' v3
   
muscle tissue//endothelial/10x 3' v3/... 729 muscle tissue endothelial female TSP1 10x 3' v3
   
muscle tissue//endothelial/Smart-seq2... 314 muscle tissue endothelial female TSP1 Smart-seq2
   
muscle tissue//endothelial/Smart-seq2... 173 muscle tissue endothelial female TSP2 Smart-seq2
   
muscle tissue//immune/10x 3' v3/femal... 132 muscle tissue immune female TSP1 10x 3' v3
   
muscle tissue//immune/Smart-seq2/fema... 297 muscle tissue immune female TSP1 Smart-seq2
   
muscle tissue//immune/Smart-seq2/fema... 545 muscle tissue immune female TSP2 Smart-seq2
   
muscle tissue/diaphragm/endothelial/1... 1506 muscle tissue diaphragm endothelial female TSP2 10x 3' v3
   
muscle tissue/diaphragm/endothelial/1... 104 muscle tissue diaphragm endothelial male TSP14 10x 3' v3
   
muscle tissue/diaphragm/endothelial/S... 260 muscle tissue diaphragm endothelial female TSP2 Smart-seq2
   
muscle tissue/diaphragm/endothelial/S... 248 muscle tissue diaphragm endothelial female TSP4 Smart-seq2
   
muscle tissue/diaphragm/immune/10x 3'... 386 muscle tissue diaphragm immune female TSP2 10x 3' v3
   
muscle tissue/diaphragm/immune/10x 3'... 454 muscle tissue diaphragm immune male TSP14 10x 3' v3
   
muscle tissue/diaphragm/immune/Smart-... 247 muscle tissue diaphragm immune female TSP4 Smart-seq2
   
muscle tissue/diaphragm/stromal/10x 3... 2227 muscle tissue diaphragm stromal female TSP2 10x 3' v3
   
muscle tissue/diaphragm/stromal/10x 3... 1683 muscle tissue diaphragm stromal male TSP14 10x 3' v3
   
muscle tissue/diaphragm/stromal/Smart... 636 muscle tissue diaphragm stromal female TSP4 Smart-seq2
   
muscle tissue/diaphragm/stromal/Smart... 62 muscle tissue diaphragm stromal female TSP2 Smart-seq2
   
muscle tissue/diaphragm/epithelial/10... 11 muscle tissue diaphragm epithelial male TSP14 10x 3' v3
   
muscle tissue/diaphragm/immune/Smart-... 1 muscle tissue diaphragm immune female TSP2 Smart-seq2
   
muscle tissue//stromal/10x 3' v3/fema... 1651 muscle tissue stromal female TSP1 10x 3' v3
   
muscle tissue//stromal/Smart-seq2/fem... 637 muscle tissue stromal female TSP1 Smart-seq2
   
muscle tissue//stromal/Smart-seq2/fem... 403 muscle tissue stromal female TSP2 Smart-seq2
   
muscle tissue/rectus abdominus/endoth... 1782 muscle tissue rectus abdominus endothelial female TSP2 10x 3' v3
   
muscle tissue/rectus abdominus/endoth... 227 muscle tissue rectus abdominus endothelial female TSP4 Smart-seq2
   
muscle tissue/rectus abdominus/immune... 827 muscle tissue rectus abdominus immune female TSP2 10x 3' v3
   
muscle tissue/rectus abdominus/immune... 224 muscle tissue rectus abdominus immune female TSP4 Smart-seq2
   
muscle tissue/rectus abdominus/stroma... 8069 muscle tissue rectus abdominus stromal female TSP2 10x 3' v3
   
muscle tissue/rectus abdominus/stroma... 662 muscle tissue rectus abdominus stromal female TSP4 Smart-seq2
   
muscle tissue/rectus abdominus/immune... 1 muscle tissue rectus abdominus immune female TSP2 Smart-seq2
   
muscle tissue/rectus abdominus/stroma... 105 muscle tissue rectus abdominus stromal female TSP2 Smart-seq2
   
muscle tissue/rectus abdominus/epithe... 1 muscle tissue rectus abdominus epithelial female TSP4 Smart-seq2
   
pancreas/endocrine/immune/10x 3' v3/f... 56 pancreas endocrine immune female TSP1 10x 3' v3
   
pancreas/endocrine/immune/Smart-seq2/... 197 pancreas endocrine immune female TSP1 Smart-seq2
   
pancreas/endocrine/endothelial/10x 3'... 146 pancreas endocrine endothelial female TSP1 10x 3' v3
   
pancreas/endocrine/endothelial/Smart-... 27 pancreas endocrine endothelial female TSP1 Smart-seq2
   
pancreas/endocrine/epithelial/10x 3' ... 758 pancreas endocrine epithelial female TSP1 10x 3' v3
   
pancreas/endocrine/epithelial/Smart-s... 329 pancreas endocrine epithelial female TSP1 Smart-seq2
   
pancreas/endocrine/stromal/10x 3' v3/... 1 pancreas endocrine stromal female TSP1 10x 3' v3
   
pancreas/endocrine/stromal/Smart-seq2... 6 pancreas endocrine stromal female TSP1 Smart-seq2
   
pancreas/exocrine/immune/10x 3' v3/fe... 31 pancreas exocrine immune female TSP1 10x 3' v3
   
pancreas/exocrine/immune/10x 3' v3/ma... 2445 pancreas exocrine immune male TSP9 10x 3' v3
   
pancreas/exocrine/endothelial/10x 3' ... 92 pancreas exocrine endothelial female TSP1 10x 3' v3
   
pancreas/exocrine/endothelial/10x 3' ... 1835 pancreas exocrine endothelial male TSP9 10x 3' v3
   
pancreas/exocrine/stromal/10x 3' v3/m... 400 pancreas exocrine stromal male TSP9 10x 3' v3
   
pancreas/exocrine/immune/Smart-seq2/m... 13 pancreas exocrine immune male TSP9 Smart-seq2
   
pancreas/exocrine/epithelial/10x 3' v... 4769 pancreas exocrine epithelial female TSP1 10x 3' v3
   
pancreas/exocrine/epithelial/Smart-se... 354 pancreas exocrine epithelial female TSP1 Smart-seq2
   
pancreas/exocrine/epithelial/10x 3' v... 1936 pancreas exocrine epithelial male TSP9 10x 3' v3
   
pancreas/exocrine/epithelial/Smart-se... 69 pancreas exocrine epithelial male TSP9 Smart-seq2
   
pancreas/exocrine/stromal/10x 3' v3/f... 32 pancreas exocrine stromal female TSP1 10x 3' v3
   
pancreas/exocrine/stromal/Smart-seq2/... 1 pancreas exocrine stromal male TSP9 Smart-seq2
   
prostate gland//epithelial/10x 3' v3/... 9756 prostate gland epithelial male TSP8 10x 3' v3
   
prostate gland//epithelial/10x 3' v3/... 2131 prostate gland epithelial male TSP14 10x 3' v3
   
prostate gland//epithelial/Smart-seq2... 429 prostate gland epithelial male TSP8 Smart-seq2
   
prostate gland//immune/10x 3' v3/male... 1741 prostate gland immune male TSP8 10x 3' v3
   
prostate gland//immune/Smart-seq2/mal... 172 prostate gland immune male TSP8 Smart-seq2
   
prostate gland//endothelial/10x 3' v3... 471 prostate gland endothelial male TSP8 10x 3' v3
   
prostate gland//endothelial/10x 3' v3... 114 prostate gland endothelial male TSP14 10x 3' v3
   
prostate gland//immune/10x 3' v3/male... 1010 prostate gland immune male TSP14 10x 3' v3
   
prostate gland//stromal/10x 3' v3/mal... 492 prostate gland stromal male TSP8 10x 3' v3
   
prostate gland//stromal/10x 3' v3/mal... 16 prostate gland stromal male TSP14 10x 3' v3
   
prostate gland//germ line/10x 3' v3/m... 11 prostate gland germ line male TSP14 10x 3' v3
   
prostate gland//stromal/Smart-seq2/ma... 32 prostate gland stromal male TSP8 Smart-seq2
   
saliva-secreting gland/parotid/epithe... 1957 saliva-secreting gland parotid epithelial female TSP7 10x 3' v3
   
saliva-secreting gland/parotid/epithe... 6975 saliva-secreting gland parotid epithelial male TSP14 10x 3' v3
   
saliva-secreting gland/parotid/stroma... 1028 saliva-secreting gland parotid stromal female TSP7 10x 3' v3
   
saliva-secreting gland/parotid/stroma... 845 saliva-secreting gland parotid stromal male TSP14 10x 3' v3
   
saliva-secreting gland/parotid/stroma... 242 saliva-secreting gland parotid stromal female TSP7 Smart-seq2
   
saliva-secreting gland/parotid/immune... 5475 saliva-secreting gland parotid immune female TSP7 10x 3' v3
   
saliva-secreting gland/parotid/immune... 3628 saliva-secreting gland parotid immune male TSP14 10x 3' v3
   
saliva-secreting gland/parotid/immune... 590 saliva-secreting gland parotid immune female TSP7 Smart-seq2
   
saliva-secreting gland/parotid/endoth... 145 saliva-secreting gland parotid endothelial female TSP7 10x 3' v3
   
saliva-secreting gland/parotid/endoth... 118 saliva-secreting gland parotid endothelial male TSP14 10x 3' v3
   
saliva-secreting gland/submandibular/... 4158 saliva-secreting gland submandibular epithelial male TSP14 10x 3' v3
   
saliva-secreting gland/submandibular/... 380 saliva-secreting gland submandibular endothelial male TSP14 10x 3' v3
   
saliva-secreting gland/submandibular/... 642 saliva-secreting gland submandibular stromal male TSP14 10x 3' v3
   
saliva-secreting gland/submandibular/... 1016 saliva-secreting gland submandibular immune male TSP14 10x 3' v3
   
skin of body/abdomen/immune/10x 3' v3... 765 skin of body abdomen immune male TSP14 10x 3' v3
   
skin of body/abdomen/immune/Smart-seq... 273 skin of body abdomen immune male TSP10 Smart-seq2
   
skin of body/abdomen/endothelial/10x ... 139 skin of body abdomen endothelial male TSP14 10x 3' v3
   
skin of body/abdomen/endothelial/Smar... 52 skin of body abdomen endothelial male TSP10 Smart-seq2
   
skin of body/abdomen/epithelial/10x 3... 3 skin of body abdomen epithelial male TSP14 10x 3' v3
   
skin of body/abdomen/epithelial/Smart... 6 skin of body abdomen epithelial male TSP10 Smart-seq2
   
skin of body/abdomen/stromal/10x 3' v... 683 skin of body abdomen stromal male TSP14 10x 3' v3
   
skin of body/abdomen/stromal/Smart-se... 86 skin of body abdomen stromal male TSP10 Smart-seq2
   
skin of body//immune/10x 3' v3/male/T... 2623 skin of body immune male TSP10 10x 3' v3
   
skin of body/chest/immune/10x 3' v3/m... 607 skin of body chest immune male TSP14 10x 3' v3
   
skin of body/chest/immune/Smart-seq2/... 274 skin of body chest immune male TSP10 Smart-seq2
   
skin of body/chest/stromal/10x 3' v3/... 1025 skin of body chest stromal male TSP14 10x 3' v3
   
skin of body/chest/endothelial/10x 3'... 337 skin of body chest endothelial male TSP14 10x 3' v3
   
skin of body/chest/endothelial/Smart-... 79 skin of body chest endothelial male TSP10 Smart-seq2
   
skin of body/chest/epithelial/10x 3' ... 2 skin of body chest epithelial male TSP14 10x 3' v3
   
skin of body/chest/epithelial/Smart-s... 36 skin of body chest epithelial male TSP10 Smart-seq2
   
skin of body/chest/stromal/Smart-seq2... 38 skin of body chest stromal male TSP10 Smart-seq2
   
skin of body//endothelial/10x 3' v3/m... 702 skin of body endothelial male TSP10 10x 3' v3
   
skin of body//epithelial/10x 3' v3/ma... 59 skin of body epithelial male TSP10 10x 3' v3
   
skin of body//stromal/10x 3' v3/male/... 1635 skin of body stromal male TSP10 10x 3' v3
   
small intestine/distal/immune/10x 3' ... 19 small intestine distal immune female TSP2 10x 3' v3
   
small intestine/distal/immune/10x 3' ... 4069 small intestine distal immune male TSP14 10x 3' v3
   
small intestine/distal/immune/Smart-s... 1 small intestine distal immune female TSP2 Smart-seq2
   
small intestine/distal/epithelial/10x... 130 small intestine distal epithelial female TSP2 10x 3' v3
   
small intestine/distal/epithelial/10x... 920 small intestine distal epithelial male TSP14 10x 3' v3
   
small intestine/distal/epithelial/Sma... 11 small intestine distal epithelial female TSP2 Smart-seq2
   
small intestine/distal/stromal/10x 3'... 69 small intestine distal stromal male TSP14 10x 3' v3
   
small intestine/distal/endothelial/10... 3 small intestine distal endothelial female TSP2 10x 3' v3
   
small intestine/distal/endothelial/10... 7 small intestine distal endothelial male TSP14 10x 3' v3
   
small intestine//epithelial/Smart-seq... 589 small intestine epithelial female TSP2 Smart-seq2
   
small intestine//stromal/Smart-seq2/f... 1 small intestine stromal female TSP2 Smart-seq2
   
small intestine//immune/Smart-seq2/fe... 4 small intestine immune female TSP2 Smart-seq2
   
small intestine/proximal/immune/10x 3... 150 small intestine proximal immune female TSP2 10x 3' v3
   
small intestine/proximal/immune/10x 3... 4353 small intestine proximal immune male TSP14 10x 3' v3
   
small intestine/proximal/epithelial/1... 1049 small intestine proximal epithelial female TSP2 10x 3' v3
   
small intestine/proximal/epithelial/1... 1013 small intestine proximal epithelial male TSP14 10x 3' v3
   
small intestine/proximal/stromal/10x ... 24 small intestine proximal stromal female TSP2 10x 3' v3
   
small intestine/proximal/stromal/10x ... 19 small intestine proximal stromal male TSP14 10x 3' v3
   
small intestine/proximal/endothelial/... 28 small intestine proximal endothelial female TSP2 10x 3' v3
   
small intestine/proximal/endothelial/... 8 small intestine proximal endothelial male TSP14 10x 3' v3
   
spleen//immune/10x 3' v3/female/TSP2 6542 spleen immune female TSP2 10x 3' v3
   
spleen//immune/10x 3' v3/female/TSP7 5907 spleen immune female TSP7 10x 3' v3
   
spleen//immune/10x 3' v3/male/TSP14 18836 spleen immune male TSP14 10x 3' v3
   
spleen//immune/Smart-seq2/female/TSP2 979 spleen immune female TSP2 Smart-seq2
   
spleen//immune/Smart-seq2/female/TSP7 1144 spleen immune female TSP7 Smart-seq2
   
spleen//endothelial/10x 3' v3/female/... 156 spleen endothelial female TSP2 10x 3' v3
   
spleen//endothelial/10x 3' v3/female/... 287 spleen endothelial female TSP7 10x 3' v3
   
spleen//endothelial/10x 3' v3/male/TSP14 128 spleen endothelial male TSP14 10x 3' v3
   
spleen//endothelial/Smart-seq2/female... 2 spleen endothelial female TSP2 Smart-seq2
   
spleen//endothelial/Smart-seq2/female... 23 spleen endothelial female TSP7 Smart-seq2
   
thymus//immune/10x 3' v3/male/TSP14 14312 thymus immune male TSP14 10x 3' v3
   
thymus//endothelial/10x 3' v3/female/... 1603 thymus endothelial female TSP2 10x 3' v3
   
thymus//endothelial/10x 3' v3/male/TSP14 2436 thymus endothelial male TSP14 10x 3' v3
   
thymus//endothelial/Smart-seq2/female... 234 thymus endothelial female TSP2 Smart-seq2
   
thymus//immune/10x 3' v3/female/TSP2 8662 thymus immune female TSP2 10x 3' v3
   
thymus//immune/Smart-seq2/female/TSP2 99 thymus immune female TSP2 Smart-seq2
   
thymus//stromal/10x 3' v3/female/TSP2 1188 thymus stromal female TSP2 10x 3' v3
   
thymus//stromal/Smart-seq2/female/TSP2 262 thymus stromal female TSP2 Smart-seq2
   
thymus//stromal/10x 3' v3/male/TSP14 4690 thymus stromal male TSP14 10x 3' v3
   
thymus//epithelial/10x 3' v3/female/TSP2 34 thymus epithelial female TSP2 10x 3' v3
   
thymus//epithelial/10x 3' v3/male/TSP14 140 thymus epithelial male TSP14 10x 3' v3
   
thymus//epithelial/Smart-seq2/female/... 4 thymus epithelial female TSP2 Smart-seq2
   
tongue/anterior/epithelial/10x 3' v3/... 2089 tongue anterior epithelial male TSP14 10x 3' v3
   
tongue/anterior/epithelial/Smart-seq2... 295 tongue anterior epithelial female TSP7 Smart-seq2
   
tongue/anterior/endothelial/10x 3' v3... 177 tongue anterior endothelial male TSP14 10x 3' v3
   
tongue/anterior/endothelial/Smart-seq... 8 tongue anterior endothelial female TSP7 Smart-seq2
   
tongue/anterior/epithelial/10x 3' v3/... 2114 tongue anterior epithelial female TSP7 10x 3' v3
   
tongue/anterior/stromal/10x 3' v3/mal... 129 tongue anterior stromal male TSP14 10x 3' v3
   
tongue/anterior/stromal/Smart-seq2/fe... 26 tongue anterior stromal female TSP7 Smart-seq2
   
tongue/anterior/immune/10x 3' v3/male... 296 tongue anterior immune male TSP14 10x 3' v3
   
tongue/anterior/immune/Smart-seq2/fem... 233 tongue anterior immune female TSP7 Smart-seq2
   
tongue//epithelial/Smart-seq2/female/... 169 tongue epithelial female TSP4 Smart-seq2
   
tongue//stromal/Smart-seq2/female/TSP4 11 tongue stromal female TSP4 Smart-seq2
   
tongue//immune/Smart-seq2/female/TSP4 6 tongue immune female TSP4 Smart-seq2
   
tongue/posterior/epithelial/10x 3' v3... 4716 tongue posterior epithelial female TSP7 10x 3' v3
   
tongue/posterior/epithelial/10x 3' v3... 2321 tongue posterior epithelial male TSP14 10x 3' v3
   
tongue/posterior/epithelial/Smart-seq... 358 tongue posterior epithelial female TSP7 Smart-seq2
   
tongue/posterior/endothelial/10x 3' v... 110 tongue posterior endothelial female TSP7 10x 3' v3
   
tongue/posterior/endothelial/10x 3' v... 112 tongue posterior endothelial male TSP14 10x 3' v3
   
tongue/posterior/stromal/10x 3' v3/fe... 152 tongue posterior stromal female TSP7 10x 3' v3
   
tongue/posterior/stromal/10x 3' v3/ma... 95 tongue posterior stromal male TSP14 10x 3' v3
   
tongue/posterior/stromal/Smart-seq2/f... 25 tongue posterior stromal female TSP7 Smart-seq2
   
tongue/posterior/immune/10x 3' v3/fem... 1120 tongue posterior immune female TSP7 10x 3' v3
   
tongue/posterior/immune/10x 3' v3/mal... 198 tongue posterior immune male TSP14 10x 3' v3
   
tongue/posterior/immune/Smart-seq2/fe... 256 tongue posterior immune female TSP7 Smart-seq2
   
tongue/posterior/endothelial/Smart-se... 4 tongue posterior endothelial female TSP7 Smart-seq2
   
trachea//immune/10x 3' v3/male/TSP6 2540 trachea immune male TSP6 10x 3' v3
   
trachea//immune/Smart-seq2/male/TSP6 76 trachea immune male TSP6 Smart-seq2
   
trachea//epithelial/10x 3' v3/female/... 3985 trachea epithelial female TSP2 10x 3' v3
   
trachea//epithelial/10x 3' v3/male/TSP6 813 trachea epithelial male TSP6 10x 3' v3
   
trachea//epithelial/Smart-seq2/female... 119 trachea epithelial female TSP2 Smart-seq2
   
trachea//epithelial/Smart-seq2/male/TSP6 130 trachea epithelial male TSP6 Smart-seq2
   
trachea//stromal/10x 3' v3/female/TSP2 249 trachea stromal female TSP2 10x 3' v3
   
trachea//endothelial/10x 3' v3/female... 33 trachea endothelial female TSP2 10x 3' v3
   
trachea//endothelial/10x 3' v3/male/TSP6 192 trachea endothelial male TSP6 10x 3' v3
   
trachea//endothelial/Smart-seq2/male/... 32 trachea endothelial male TSP6 Smart-seq2
   
trachea//stromal/10x 3' v3/male/TSP6 1218 trachea stromal male TSP6 10x 3' v3
   
trachea//stromal/Smart-seq2/male/TSP6 117 trachea stromal male TSP6 Smart-seq2
   
trachea//immune/10x 3' v3/female/TSP2 18 trachea immune female TSP2 10x 3' v3
   
uterus//epithelial/Smart-seq2/female/... 54 uterus epithelial female TSP4 Smart-seq2
   
uterus/endometrium/immune/10x 3' v3/f... 874 uterus endometrium immune female TSP4 10x 3' v3
   
uterus/endometrium/epithelial/10x 3' ... 230 uterus endometrium epithelial female TSP4 10x 3' v3
   
uterus/endometrium/endothelial/10x 3'... 168 uterus endometrium endothelial female TSP4 10x 3' v3
   
uterus/endometrium/stromal/10x 3' v3/... 2541 uterus endometrium stromal female TSP4 10x 3' v3
   
uterus//endothelial/Smart-seq2/female... 21 uterus endothelial female TSP4 Smart-seq2
   
uterus//stromal/Smart-seq2/female/TSP4 156 uterus stromal female TSP4 Smart-seq2
   
uterus//immune/Smart-seq2/female/TSP4 55 uterus immune female TSP4 Smart-seq2
   
uterus/myometrium/endothelial/10x 3' ... 1974 uterus myometrium endothelial female TSP4 10x 3' v3
   
uterus/myometrium/epithelial/10x 3' v... 9 uterus myometrium epithelial female TSP4 10x 3' v3
   
uterus/myometrium/stromal/10x 3' v3/f... 1001 uterus myometrium stromal female TSP4 10x 3' v3
   
uterus/myometrium/immune/10x 3' v3/fe... 41 uterus myometrium immune female TSP4 10x 3' v3
   
vasculature/aorta/immune/10x 3' v3/fe... 2090 vasculature aorta immune female TSP2 10x 3' v3
   
vasculature/aorta/immune/Smart-seq2/f... 306 vasculature aorta immune female TSP2 Smart-seq2
   
vasculature/aorta/endothelial/10x 3' ... 1274 vasculature aorta endothelial female TSP2 10x 3' v3
   
vasculature/aorta/endothelial/Smart-s... 275 vasculature aorta endothelial female TSP2 Smart-seq2
   
vasculature/aorta/epithelial/10x 3' v... 26 vasculature aorta epithelial female TSP2 10x 3' v3
   
vasculature/aorta/stromal/10x 3' v3/f... 4411 vasculature aorta stromal female TSP2 10x 3' v3
   
vasculature/aorta/stromal/Smart-seq2/... 2 vasculature aorta stromal female TSP2 Smart-seq2
   
vasculature/aorta vena cava/immune/10... 740 vasculature aorta vena cava immune male TSP14 10x 3' v3
   
vasculature/aorta vena cava/endotheli... 245 vasculature aorta vena cava endothelial male TSP14 10x 3' v3
   
vasculature/aorta vena cava/stromal/1... 1754 vasculature aorta vena cava stromal male TSP14 10x 3' v3
   
vasculature/coronary arteries/immune/... 993 vasculature coronary arteries immune male TSP14 10x 3' v3
   
vasculature/coronary arteries/endothe... 986 vasculature coronary arteries endothelial male TSP14 10x 3' v3
   
vasculature/coronary arteries/stromal... 3705 vasculature coronary arteries stromal male TSP14 10x 3' v3
   
vasculature//stromal/Smart-seq2/femal... 263 vasculature stromal female TSP2 Smart-seq2
   
vasculature//immune/Smart-seq2/female... 1 vasculature immune female TSP2 Smart-seq2
Data schema/format description and download
Assembly: Human Dec. 2013 (GRCh38/hg38)
Data last updated at UCSC: 2022-05-12 04:59:08

Description

This track shows data from The Tabula Sapiens: a multiple organ single cell transcriptomic atlas of humans. The dataset covers ~500,000 cells from a total of 24 human tissues and organs from all regions of the body using both droplet-based and plate-based single-cell RNA-sequencing (scRNA-seq). Samples were taken from the human bladder, blood, bone marrow, eye, fat, heart, kidney, large intestine, liver, lung, lymph node, mammary, muscle, pancreas, prostate, salivary gland, skin, small intestine, spleen, thymus, tongue, trachea, uterus, and vasculature. The dataset includes 264,009 immune cells, 102,580 epithelial cells, 32,701 endothelial cells, and 81,529 stromal cells. A total of 475 distinct cell types were identified.

This track collection contains two bar chart tracks of RNA expression. The first track, Tabula Tissue Cell allows cells to be grouped together and faceted on up to 3 categories: tissue, cell class, and cell type. The second track, Tabula Details allows cells to be grouped together and faceted on up to 7 categories: tissue, cell class, cell type, subtissue, sex, donor, and assay.

Please see tabula-sapiens-portal.ds.czbiohub.org for further interactive displays and additional data.

Display Conventions and Configuration

The cell types are colored by which compartment they belong to according to the following table. In addition, cells found in the Tabula Details track with less than 100 transcripts will be a lighter shade and less concentrated in color to represent a low number of transcripts.

Color Cell Compartment
epithelial
endothelial
germline
immune
stromal

Methods

All tissues

36 tissue specimens comprising 24 unique tissues and organs were collected from 15 human donors (TSP1-15) with a mean age of 51 years. Tissue specimens were collected at various hospital locations in the Northern California region and transported on ice in less than one hour to preserve cell viability. Single cell suspensions from each organ were prepared in tissue expert laboratories at Stanford and UCSF. For each tissue, the dissociated cells were sorted using MACS and FACS to balance immune, stromal, epithelial, and endothelial cell types.

Sequencing libraries for all tissues were prepared using 10x 3' v3.1, 10x 5' v2, and Smart-seq2 (SS2) protocols for Illumina sequencing. Two 10x reactions per organ were loaded with 7,000 cells each with the goal to yield 10,000 QC-passed cells. Four 384-well Smartseq2 plates were run per organ. In most organs, one plate was used for each compartment (epithelial, endothelial, immune, and stromal), however, to capture rare cells, some organ experts allocated cells across the four plates differently. Sequencing runs for droplet libraries were loaded onto the NovaSeq S4 flow cell in sets of 16 to 20 libraries of approximately 5,000 cells per library with the goal of generating 50,000 to 75,000 reads per cell. Plate libraries were run in sets of 20 plates on Novaseq S4 flow cells to allow generating 1M reads per cell, depending on library quality. 152 10x reactions were performed, yielding 454,069 cells passing QC, and 161 smartseq2 plates were processed, yielding 27,051 cells passing QC.

Tissues collected from the same donor were used to study the clonal distribution of T cells between tissues, to understand the tissue specific mutation rate in B cells, and to analyze the cell cycle state and proliferative potential of shared cell types across tissues. RNA splicing analysis was also used to characterize cell type specific splicing and its variation across individuals.

For detailed methods and information on donors for each organ or tissue please refer to Quake et al, 2021 or the Tabula Sapiens website.

Errata

Some cell types, particularly in the intestines, are duplicated due to the use of multiple ontologies for the same cell type. In a future version, we plan to pool the data from these duplicates.

Data Access

The raw bar chart data can be explored interactively with the Table Browser, or the Data Integrator. For automated analysis, the data may be queried from our REST API. Please refer to our mailing list archives for questions, or our Data Access FAQ for more information.

The cell/gene matrix and cell-level metadata was downloaded from the UCSC Cell Browser. The UCSC command line utility matrixClusterColumns, matrixToBarChart, and bedToBigBed were used to transform these into a bar chart format bigBed file that can be visualized. The UCSC utilities can be found on our download server.

Credits

Thanks to the Tabula Sapiens Consortium who worked on producing and publishing this data set. The data were integrated into the UCSC Genome Browser by Jim Kent, Brittney Wick, and Rachel Schwartz.

References

The Tabula Sapiens Consortium, Quake SR., The Tabula Sapiens: A Multiple Organ Single Cell Transcriptomic Atlas of Humans. bioRxiv. 2021 March 4.; doi: https://doi.org/10.1101/2021.07.19.452956.