Tabula Sapiens Tabula Details Track Settings
 
Tabula sapiens full details view

Track collection: Tabula Sapiens single cell RNA data from many tissues

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Log10(x+1) transform:    View limits maximum: parts per million (range 0-10000)


color cluster count tissue subtissue cell_class cell_type sex donor assay
   
bladder organ//immune/B cell/10x 3' v... 235 bladder organ immune B cell female TSP2 10x 3' v3
   
bladder organ//immune/B cell/Smart-se... 5 bladder organ immune B cell female TSP2 Smart-seq2
   
bladder organ//endothelial/capillary ... 10 bladder organ endothelial capillary endothelial cell female TSP2 10x 3' v3
   
bladder organ//endothelial/endothelia... 6 bladder organ endothelial endothelial cell of lymphatic vessel female TSP2 10x 3' v3
   
bladder organ//immune/macrophage/10x ... 2636 bladder organ immune macrophage female TSP2 10x 3' v3
   
bladder organ//immune/macrophage/Smar... 147 bladder organ immune macrophage female TSP2 Smart-seq2
   
bladder organ//immune/mast cell/10x 3... 313 bladder organ immune mast cell female TSP2 10x 3' v3
   
bladder organ//immune/mast cell/Smart... 29 bladder organ immune mast cell female TSP2 Smart-seq2
   
bladder organ//immune/mature NK T cel... 465 bladder organ immune mature NK T cell female TSP2 10x 3' v3
   
bladder organ//immune/mature NK T cel... 6 bladder organ immune mature NK T cell female TSP2 Smart-seq2
   
bladder organ//immune/plasma cell/10x... 457 bladder organ immune plasma cell female TSP2 10x 3' v3
   
bladder organ//immune/plasma cell/Sma... 11 bladder organ immune plasma cell female TSP2 Smart-seq2
   
bladder organ//immune/T cell/10x 3' v... 1404 bladder organ immune T cell female TSP2 10x 3' v3
   
bladder organ//immune/T cell/Smart-se... 1 bladder organ immune T cell female TSP2 Smart-seq2
   
bladder organ//endothelial/vein endot... 108 bladder organ endothelial vein endothelial cell female TSP2 10x 3' v3
   
blood//immune/CD4-positive, alpha-bet... 1238 blood immune CD4-positive, alpha-beta T cell female TSP2 10x 3' v3
   
blood//immune/CD4-positive, alpha-bet... 335 blood immune CD4-positive, alpha-beta T cell female TSP2 Smart-seq2
   
blood//immune/CD8-positive, alpha-bet... 548 blood immune CD8-positive, alpha-beta T cell female TSP2 10x 3' v3
   
blood//immune/CD8-positive, alpha-bet... 43 blood immune CD8-positive, alpha-beta T cell female TSP2 Smart-seq2
   
blood//immune/common myeloid progenit... 2 blood immune common myeloid progenitor female TSP2 10x 3' v3
   
blood//immune/erythrocyte/10x 3' v3/f... 319 blood immune erythrocyte female TSP2 10x 3' v3
   
blood//immune/erythrocyte/Smart-seq2/... 14 blood immune erythrocyte female TSP2 Smart-seq2
   
blood//immune/granulocyte/10x 3' v3/f... 2 blood immune granulocyte female TSP2 10x 3' v3
   
blood//immune/hematopoietic stem cell... 16 blood immune hematopoietic stem cell female TSP2 10x 3' v3
   
blood//immune/hematopoietic stem cell... 5 blood immune hematopoietic stem cell female TSP2 Smart-seq2
   
blood//immune/macrophage/10x 3' v3/fe... 488 blood immune macrophage female TSP2 10x 3' v3
   
blood//immune/mature NK T cell/10x 3'... 452 blood immune mature NK T cell female TSP2 10x 3' v3
   
blood//immune/mature NK T cell/Smart-... 38 blood immune mature NK T cell female TSP2 Smart-seq2
   
blood//immune/memory B cell/10x 3' v3... 80 blood immune memory B cell female TSP2 10x 3' v3
   
blood//immune/memory B cell/Smart-seq... 9 blood immune memory B cell female TSP2 Smart-seq2
   
blood//immune/monocyte/10x 3' v3/female 6819 blood immune monocyte female TSP2 10x 3' v3
   
blood//immune/monocyte/Smart-seq2/female 519 blood immune monocyte female TSP2 Smart-seq2
   
blood//immune/naive B cell/10x 3' v3/... 338 blood immune naive B cell female TSP2 10x 3' v3
   
blood//immune/naive B cell/Smart-seq2... 112 blood immune naive B cell female TSP2 Smart-seq2
   
blood//immune/neutrophil/10x 3' v3/fe... 6 blood immune neutrophil female TSP2 10x 3' v3
   
blood//immune/neutrophil/Smart-seq2/f... 15 blood immune neutrophil female TSP2 Smart-seq2
   
blood//immune/plasma cell/10x 3' v3/f... 1 blood immune plasma cell female TSP2 10x 3' v3
   
blood//immune/plasmablast/10x 3' v3/f... 3 blood immune plasmablast female TSP2 10x 3' v3
   
bone marrow//immune/CD4-positive, alp... 5 bone marrow immune CD4-positive, alpha-beta T cell female TSP2 Smart-seq2
   
bone marrow//immune/CD8-positive, alp... 21 bone marrow immune CD8-positive, alpha-beta T cell female TSP2 Smart-seq2
   
bone marrow//immune/common myeloid pr... 14 bone marrow immune common myeloid progenitor female TSP2 Smart-seq2
   
bone marrow//immune/erythroid progeni... 4 bone marrow immune erythroid progenitor cell female TSP2 Smart-seq2
   
bone marrow//immune/granulocyte/Smart... 12 bone marrow immune granulocyte female TSP2 Smart-seq2
   
bone marrow//immune/hematopoietic ste... 54 bone marrow immune hematopoietic stem cell female TSP2 Smart-seq2
   
bone marrow//immune/mature NK T cell/... 135 bone marrow immune mature NK T cell female TSP2 Smart-seq2
   
bone marrow//immune/memory B cell/Sma... 13 bone marrow immune memory B cell female TSP2 Smart-seq2
   
bone marrow//immune/monocyte/Smart-se... 5 bone marrow immune monocyte female TSP2 Smart-seq2
   
bone marrow//immune/naive B cell/Smar... 15 bone marrow immune naive B cell female TSP2 Smart-seq2
   
bone marrow//immune/neutrophil/Smart-... 9 bone marrow immune neutrophil female TSP2 Smart-seq2
   
bone marrow//immune/plasma cell/Smart... 14 bone marrow immune plasma cell female TSP2 Smart-seq2
   
bone marrow/vertebral body/immune/CD4... 367 bone marrow vertebral body immune CD4-positive, alpha-beta T cell female TSP2 10x 3' v3
   
bone marrow/vertebral body/immune/CD4... 151 bone marrow vertebral body immune CD4-positive, alpha-beta T cell female TSP2 Smart-seq2
   
bone marrow/vertebral body/immune/CD8... 327 bone marrow vertebral body immune CD8-positive, alpha-beta T cell female TSP2 10x 3' v3
   
bone marrow/vertebral body/immune/CD8... 93 bone marrow vertebral body immune CD8-positive, alpha-beta T cell female TSP2 Smart-seq2
   
bone marrow/vertebral body/immune/com... 74 bone marrow vertebral body immune common myeloid progenitor female TSP2 10x 3' v3
   
bone marrow/vertebral body/immune/ery... 249 bone marrow vertebral body immune erythroid progenitor cell female TSP2 10x 3' v3
   
bone marrow/vertebral body/immune/ery... 8 bone marrow vertebral body immune erythroid progenitor cell female TSP2 Smart-seq2
   
bone marrow/vertebral body/immune/gra... 268 bone marrow vertebral body immune granulocyte female TSP2 10x 3' v3
   
bone marrow/vertebral body/immune/gra... 7 bone marrow vertebral body immune granulocyte female TSP2 Smart-seq2
   
bone marrow/vertebral body/immune/hem... 195 bone marrow vertebral body immune hematopoietic stem cell female TSP2 10x 3' v3
   
bone marrow/vertebral body/immune/hem... 7 bone marrow vertebral body immune hematopoietic stem cell female TSP2 Smart-seq2
   
bone marrow/vertebral body/immune/mac... 156 bone marrow vertebral body immune macrophage female TSP2 10x 3' v3
   
bone marrow/vertebral body/immune/mac... 1 bone marrow vertebral body immune macrophage female TSP2 Smart-seq2
   
bone marrow/vertebral body/immune/mat... 173 bone marrow vertebral body immune mature NK T cell female TSP2 10x 3' v3
   
bone marrow/vertebral body/immune/mat... 37 bone marrow vertebral body immune mature NK T cell female TSP2 Smart-seq2
   
bone marrow/vertebral body/immune/mem... 94 bone marrow vertebral body immune memory B cell female TSP2 10x 3' v3
   
bone marrow/vertebral body/immune/mem... 2 bone marrow vertebral body immune memory B cell female TSP2 Smart-seq2
   
bone marrow/vertebral body/immune/mon... 477 bone marrow vertebral body immune monocyte female TSP2 10x 3' v3
   
bone marrow/vertebral body/immune/mon... 89 bone marrow vertebral body immune monocyte female TSP2 Smart-seq2
   
bone marrow/vertebral body/immune/nai... 53 bone marrow vertebral body immune naive B cell female TSP2 10x 3' v3
   
bone marrow/vertebral body/immune/nai... 17 bone marrow vertebral body immune naive B cell female TSP2 Smart-seq2
   
bone marrow/vertebral body/immune/neu... 1 bone marrow vertebral body immune neutrophil female TSP2 10x 3' v3
   
bone marrow/vertebral body/immune/neu... 5 bone marrow vertebral body immune neutrophil female TSP2 Smart-seq2
   
bone marrow/vertebral body/immune/pla... 264 bone marrow vertebral body immune plasma cell female TSP2 10x 3' v3
   
bone marrow/vertebral body/immune/pla... 1 bone marrow vertebral body immune plasma cell female TSP2 Smart-seq2
   
bone marrow/vertebral body/immune/pla... 1 bone marrow vertebral body immune plasmablast female TSP2 Smart-seq2
   
kidney//immune/B cell/10x 3' v3/female 274 kidney immune B cell female TSP2 10x 3' v3
   
kidney//immune/B cell/Smart-seq2/female 67 kidney immune B cell female TSP2 Smart-seq2
   
kidney//immune/CD4-positive helper T ... 149 kidney immune CD4-positive helper T cell female TSP2 10x 3' v3
   
kidney//immune/CD4-positive helper T ... 32 kidney immune CD4-positive helper T cell female TSP2 Smart-seq2
   
kidney//immune/CD8-positive, alpha-be... 183 kidney immune CD8-positive, alpha-beta T cell female TSP2 10x 3' v3
   
kidney//immune/CD8-positive, alpha-be... 58 kidney immune CD8-positive, alpha-beta T cell female TSP2 Smart-seq2
   
kidney//endothelial/endothelial cell/... 95 kidney endothelial endothelial cell female TSP2 10x 3' v3
   
kidney//immune/macrophage/10x 3' v3/f... 315 kidney immune macrophage female TSP2 10x 3' v3
   
kidney//immune/macrophage/Smart-seq2/... 6 kidney immune macrophage female TSP2 Smart-seq2
   
kidney//immune/mature NK T cell/10x 3... 97 kidney immune mature NK T cell female TSP2 10x 3' v3
   
kidney//immune/mature NK T cell/Smart... 34 kidney immune mature NK T cell female TSP2 Smart-seq2
   
large intestine/distal/immune/B cell/... 7 large intestine distal immune B cell female TSP2 10x 3' v3
   
large intestine/distal/immune/CD8-pos... 30 large intestine distal immune CD8-positive, alpha-beta T cell female TSP2 10x 3' v3
   
large intestine/distal/endothelial/gu... 14 large intestine distal endothelial gut endothelial cell female TSP2 10x 3' v3
   
large intestine//immune/neutrophil/Sm... 4 large intestine immune neutrophil female TSP2 Smart-seq2
   
large intestine/proximal/immune/B cel... 21 large intestine proximal immune B cell female TSP2 10x 3' v3
   
large intestine/proximal/immune/CD8-p... 11 large intestine proximal immune CD8-positive, alpha-beta T cell female TSP2 10x 3' v3
   
large intestine/proximal/immune/CD8-p... 1 large intestine proximal immune CD8-positive, alpha-beta T cell female TSP2 Smart-seq2
   
large intestine/proximal/endothelial/... 8 large intestine proximal endothelial gut endothelial cell female TSP2 10x 3' v3
   
large intestine/proximal/immune/neutr... 1 large intestine proximal immune neutrophil female TSP2 Smart-seq2
   
lung//endothelial/capillary endotheli... 69 lung endothelial capillary endothelial cell female TSP2 Smart-seq2
   
lung//immune/CD4-positive, alpha-beta... 1 lung immune CD4-positive, alpha-beta T cell female TSP2 Smart-seq2
   
lung//endothelial/endothelial cell of... 9 lung endothelial endothelial cell of artery female TSP2 Smart-seq2
   
lung//immune/macrophage/Smart-seq2/fe... 3 lung immune macrophage female TSP2 Smart-seq2
   
lung/neuron/immune/B cell/Smart-seq2/... 2 lung neuron immune B cell female TSP2 Smart-seq2
   
lung/neuron/immune/CD4-positive, alph... 2 lung neuron immune CD4-positive, alpha-beta T cell female TSP2 Smart-seq2
   
lung/neuron/immune/classical monocyte... 1 lung neuron immune classical monocyte female TSP2 Smart-seq2
   
lung/neuron/immune/macrophage/Smart-s... 1 lung neuron immune macrophage female TSP2 Smart-seq2
   
lung/neuron/immune/plasma cell/Smart-... 2 lung neuron immune plasma cell female TSP2 Smart-seq2
   
lung//immune/plasma cell/Smart-seq2/f... 5 lung immune plasma cell female TSP2 Smart-seq2
   
lung/prox-medial-distal/immune/B cell... 20 lung prox-medial-distal immune B cell female TSP2 10x 3' v3
   
lung/prox-medial-distal/immune/basoph... 191 lung prox-medial-distal immune basophil female TSP2 10x 3' v3
   
lung/prox-medial-distal/immune/basoph... 1 lung prox-medial-distal immune basophil female TSP2 Smart-seq2
   
lung/prox-medial-distal/endothelial/c... 1241 lung prox-medial-distal endothelial capillary endothelial cell female TSP2 10x 3' v3
   
lung/prox-medial-distal/immune/CD4-po... 380 lung prox-medial-distal immune CD4-positive, alpha-beta T cell female TSP2 10x 3' v3
   
lung/prox-medial-distal/immune/CD8-po... 393 lung prox-medial-distal immune CD8-positive, alpha-beta T cell female TSP2 10x 3' v3
   
lung/prox-medial-distal/immune/classi... 1099 lung prox-medial-distal immune classical monocyte female TSP2 10x 3' v3
   
lung/prox-medial-distal/immune/classi... 6 lung prox-medial-distal immune classical monocyte female TSP2 Smart-seq2
   
lung/prox-medial-distal/immune/dendri... 38 lung prox-medial-distal immune dendritic cell female TSP2 10x 3' v3
   
lung/prox-medial-distal/endothelial/e... 94 lung prox-medial-distal endothelial endothelial cell of artery female TSP2 10x 3' v3
   
lung/prox-medial-distal/endothelial/e... 18 lung prox-medial-distal endothelial endothelial cell of lymphatic vessel female TSP2 10x 3' v3
   
lung/prox-medial-distal/immune/interm... 252 lung prox-medial-distal immune intermediate monocyte female TSP2 10x 3' v3
   
lung/prox-medial-distal/endothelial/l... 460 lung prox-medial-distal endothelial lung microvascular endothelial cell female TSP2 10x 3' v3
   
lung/prox-medial-distal/endothelial/l... 3 lung prox-medial-distal endothelial lung microvascular endothelial cell female TSP2 Smart-seq2
   
lung/prox-medial-distal/immune/macrop... 3497 lung prox-medial-distal immune macrophage female TSP2 10x 3' v3
   
lung/prox-medial-distal/immune/macrop... 81 lung prox-medial-distal immune macrophage female TSP2 Smart-seq2
   
lung/prox-medial-distal/immune/mature... 94 lung prox-medial-distal immune mature NK T cell female TSP2 10x 3' v3
   
lung/prox-medial-distal/immune/neutro... 2 lung prox-medial-distal immune neutrophil female TSP2 10x 3' v3
   
lung/prox-medial-distal/immune/neutro... 34 lung prox-medial-distal immune neutrophil female TSP2 Smart-seq2
   
lung/prox-medial-distal/immune/non-cl... 848 lung prox-medial-distal immune non-classical monocyte female TSP2 10x 3' v3
   
lung/prox-medial-distal/immune/plasma... 91 lung prox-medial-distal immune plasma cell female TSP2 10x 3' v3
   
lung/prox-medial-distal/immune/plasma... 1 lung prox-medial-distal immune plasma cell female TSP2 Smart-seq2
   
lung/prox-medial-distal/endothelial/v... 354 lung prox-medial-distal endothelial vein endothelial cell female TSP2 10x 3' v3
   
lung//endothelial/vein endothelial ce... 18 lung endothelial vein endothelial cell female TSP2 Smart-seq2
   
lymph node//immune/CD1c-positive myel... 17 lymph node immune CD1c-positive myeloid dendritic cell female TSP2 10x 3' v3
   
lymph node//immune/CD1c-positive myel... 3 lymph node immune CD1c-positive myeloid dendritic cell female TSP2 Smart-seq2
   
lymph node//immune/CD4-positive, alph... 1241 lymph node immune CD4-positive, alpha-beta memory T cell female TSP2 10x 3' v3
   
lymph node//immune/CD4-positive, alph... 127 lymph node immune CD4-positive, alpha-beta memory T cell female TSP2 Smart-seq2
   
lymph node//immune/CD8-positive, alph... 750 lymph node immune CD8-positive, alpha-beta memory T cell female TSP2 10x 3' v3
   
lymph node//immune/CD8-positive, alph... 75 lymph node immune CD8-positive, alpha-beta memory T cell female TSP2 Smart-seq2
   
lymph node//immune/CD141-positive mye... 47 lymph node immune CD141-positive myeloid dendritic cell female TSP2 10x 3' v3
   
lymph node//immune/CD141-positive mye... 6 lymph node immune CD141-positive myeloid dendritic cell female TSP2 Smart-seq2
   
lymph node//immune/classical monocyte... 85 lymph node immune classical monocyte female TSP2 10x 3' v3
   
lymph node//endothelial/endothelial c... 9 lymph node endothelial endothelial cell female TSP2 10x 3' v3
   
lymph node//endothelial/endothelial c... 6 lymph node endothelial endothelial cell female TSP2 Smart-seq2
   
lymph node/inguinal/immune/CD1c-posit... 2 lymph node inguinal immune CD1c-positive myeloid dendritic cell female TSP2 Smart-seq2
   
lymph node/inguinal/immune/CD4-positi... 66 lymph node inguinal immune CD4-positive, alpha-beta memory T cell female TSP2 Smart-seq2
   
lymph node/inguinal/immune/CD8-positi... 39 lymph node inguinal immune CD8-positive, alpha-beta memory T cell female TSP2 Smart-seq2
   
lymph node/inguinal/immune/innate lym... 3 lymph node inguinal immune innate lymphoid cell female TSP2 Smart-seq2
   
lymph node/inguinal/immune/intermedia... 5 lymph node inguinal immune intermediate monocyte female TSP2 Smart-seq2
   
lymph node/inguinal/immune/mast cell/... 8 lymph node inguinal immune mast cell female TSP2 Smart-seq2
   
lymph node/inguinal/immune/mature NK ... 1 lymph node inguinal immune mature NK T cell female TSP2 Smart-seq2
   
lymph node/inguinal/immune/memory B c... 108 lymph node inguinal immune memory B cell female TSP2 Smart-seq2
   
lymph node/inguinal/immune/naive B ce... 5 lymph node inguinal immune naive B cell female TSP2 Smart-seq2
   
lymph node/inguinal/immune/naive thym... 60 lymph node inguinal immune naive thymus-derived CD4-positive, al... female TSP2 Smart-seq2
   
lymph node/inguinal/immune/plasma cel... 5 lymph node inguinal immune plasma cell female TSP2 Smart-seq2
   
lymph node//immune/innate lymphoid ce... 235 lymph node immune innate lymphoid cell female TSP2 10x 3' v3
   
lymph node//immune/innate lymphoid ce... 130 lymph node immune innate lymphoid cell female TSP2 Smart-seq2
   
lymph node//immune/intermediate monoc... 165 lymph node immune intermediate monocyte female TSP2 10x 3' v3
   
lymph node//immune/intermediate monoc... 2 lymph node immune intermediate monocyte female TSP2 Smart-seq2
   
lymph node//immune/macrophage/10x 3' ... 60 lymph node immune macrophage female TSP2 10x 3' v3
   
lymph node//immune/macrophage/Smart-s... 2 lymph node immune macrophage female TSP2 Smart-seq2
   
lymph node//immune/mast cell/10x 3' v... 16 lymph node immune mast cell female TSP2 10x 3' v3
   
lymph node//immune/mature NK T cell/1... 201 lymph node immune mature NK T cell female TSP2 10x 3' v3
   
lymph node//immune/mature NK T cell/S... 44 lymph node immune mature NK T cell female TSP2 Smart-seq2
   
lymph node//immune/memory B cell/10x ... 2919 lymph node immune memory B cell female TSP2 10x 3' v3
   
lymph node//immune/memory B cell/Smar... 292 lymph node immune memory B cell female TSP2 Smart-seq2
   
lymph node//immune/naive B cell/10x 3... 1324 lymph node immune naive B cell female TSP2 10x 3' v3
   
lymph node//immune/naive B cell/Smart... 6 lymph node immune naive B cell female TSP2 Smart-seq2
   
lymph node//immune/naive thymus-deriv... 1266 lymph node immune naive thymus-derived CD4-positive, al... female TSP2 10x 3' v3
   
lymph node//immune/naive thymus-deriv... 173 lymph node immune naive thymus-derived CD4-positive, al... female TSP2 Smart-seq2
   
lymph node//immune/plasma cell/10x 3'... 204 lymph node immune plasma cell female TSP2 10x 3' v3
   
lymph node//immune/plasma cell/Smart-... 52 lymph node immune plasma cell female TSP2 Smart-seq2
   
lymph node//immune/regulatory T cell/... 6 lymph node immune regulatory T cell female TSP2 10x 3' v3
   
lymph node//immune/regulatory T cell/... 2 lymph node immune regulatory T cell female TSP2 Smart-seq2
   
muscle tissue//endothelial/capillary ... 74 muscle tissue endothelial capillary endothelial cell female TSP2 Smart-seq2
   
muscle tissue//immune/CD4-positive, a... 10 muscle tissue immune CD4-positive, alpha-beta T cell female TSP2 Smart-seq2
   
muscle tissue//immune/CD8-positive, a... 229 muscle tissue immune CD8-positive, alpha-beta T cell female TSP2 Smart-seq2
   
muscle tissue/diaphragm/endothelial/c... 68 muscle tissue diaphragm endothelial capillary endothelial cell female TSP2 10x 3' v3
   
muscle tissue/diaphragm/endothelial/c... 20 muscle tissue diaphragm endothelial capillary endothelial cell female TSP2 Smart-seq2
   
muscle tissue/diaphragm/immune/CD4-po... 2 muscle tissue diaphragm immune CD4-positive, alpha-beta T cell female TSP2 10x 3' v3
   
muscle tissue/diaphragm/endothelial/e... 19 muscle tissue diaphragm endothelial endothelial cell of artery female TSP2 10x 3' v3
   
muscle tissue/diaphragm/endothelial/e... 28 muscle tissue diaphragm endothelial endothelial cell of lymphatic vessel female TSP2 10x 3' v3
   
muscle tissue/diaphragm/endothelial/e... 4 muscle tissue diaphragm endothelial endothelial cell of lymphatic vessel female TSP2 Smart-seq2
   
muscle tissue/diaphragm/endothelial/e... 1391 muscle tissue diaphragm endothelial endothelial cell of vascular tree female TSP2 10x 3' v3
   
muscle tissue/diaphragm/endothelial/e... 236 muscle tissue diaphragm endothelial endothelial cell of vascular tree female TSP2 Smart-seq2
   
muscle tissue/diaphragm/immune/erythr... 6 muscle tissue diaphragm immune erythrocyte female TSP2 10x 3' v3
   
muscle tissue/diaphragm/immune/macrop... 224 muscle tissue diaphragm immune macrophage female TSP2 10x 3' v3
   
muscle tissue/diaphragm/immune/mature... 1 muscle tissue diaphragm immune mature NK T cell female TSP2 10x 3' v3
   
muscle tissue/diaphragm/immune/T cell... 153 muscle tissue diaphragm immune T cell female TSP2 10x 3' v3
   
muscle tissue/diaphragm/immune/T cell... 1 muscle tissue diaphragm immune T cell female TSP2 Smart-seq2
   
muscle tissue//endothelial/endothelia... 99 muscle tissue endothelial endothelial cell of vascular tree female TSP2 Smart-seq2
   
muscle tissue//immune/erythrocyte/Sma... 1 muscle tissue immune erythrocyte female TSP2 Smart-seq2
   
muscle tissue//immune/macrophage/Smar... 249 muscle tissue immune macrophage female TSP2 Smart-seq2
   
muscle tissue//immune/mast cell/Smart... 1 muscle tissue immune mast cell female TSP2 Smart-seq2
   
muscle tissue//immune/mature NK T cel... 18 muscle tissue immune mature NK T cell female TSP2 Smart-seq2
   
muscle tissue/rectus abdominus/endoth... 790 muscle tissue rectus abdominus endothelial capillary endothelial cell female TSP2 10x 3' v3
   
muscle tissue/rectus abdominus/immune... 4 muscle tissue rectus abdominus immune CD4-positive, alpha-beta T cell female TSP2 10x 3' v3
   
muscle tissue/rectus abdominus/endoth... 36 muscle tissue rectus abdominus endothelial endothelial cell of artery female TSP2 10x 3' v3
   
muscle tissue/rectus abdominus/endoth... 9 muscle tissue rectus abdominus endothelial endothelial cell of lymphatic vessel female TSP2 10x 3' v3
   
muscle tissue/rectus abdominus/endoth... 947 muscle tissue rectus abdominus endothelial endothelial cell of vascular tree female TSP2 10x 3' v3
   
muscle tissue/rectus abdominus/immune... 7 muscle tissue rectus abdominus immune erythrocyte female TSP2 10x 3' v3
   
muscle tissue/rectus abdominus/immune... 692 muscle tissue rectus abdominus immune macrophage female TSP2 10x 3' v3
   
muscle tissue/rectus abdominus/immune... 1 muscle tissue rectus abdominus immune macrophage female TSP2 Smart-seq2
   
muscle tissue/rectus abdominus/immune... 7 muscle tissue rectus abdominus immune mast cell female TSP2 10x 3' v3
   
muscle tissue/rectus abdominus/immune... 3 muscle tissue rectus abdominus immune mature NK T cell female TSP2 10x 3' v3
   
muscle tissue/rectus abdominus/immune... 114 muscle tissue rectus abdominus immune T cell female TSP2 10x 3' v3
   
muscle tissue//immune/T cell/Smart-se... 37 muscle tissue immune T cell female TSP2 Smart-seq2
   
small intestine/distal/immune/B cell/... 7 small intestine distal immune B cell female TSP2 10x 3' v3
   
small intestine/distal/immune/B cell/... 1 small intestine distal immune B cell female TSP2 Smart-seq2
   
small intestine/distal/immune/CD8-pos... 12 small intestine distal immune CD8-positive, alpha-beta T cell female TSP2 10x 3' v3
   
small intestine/distal/endothelial/gu... 3 small intestine distal endothelial gut endothelial cell female TSP2 10x 3' v3
   
small intestine//immune/neutrophil/Sm... 4 small intestine immune neutrophil female TSP2 Smart-seq2
   
small intestine/proximal/immune/B cel... 70 small intestine proximal immune B cell female TSP2 10x 3' v3
   
small intestine/proximal/immune/CD8-p... 80 small intestine proximal immune CD8-positive, alpha-beta T cell female TSP2 10x 3' v3
   
small intestine/proximal/endothelial/... 28 small intestine proximal endothelial gut endothelial cell female TSP2 10x 3' v3
   
spleen//immune/CD1c-positive myeloid ... 22 spleen immune CD1c-positive myeloid dendritic cell female TSP2 10x 3' v3
   
spleen//immune/CD1c-positive myeloid ... 3 spleen immune CD1c-positive myeloid dendritic cell female TSP2 Smart-seq2
   
spleen//immune/CD4-positive, alpha-be... 278 spleen immune CD4-positive, alpha-beta memory T cell female TSP2 10x 3' v3
   
spleen//immune/CD4-positive, alpha-be... 30 spleen immune CD4-positive, alpha-beta memory T cell female TSP2 Smart-seq2
   
spleen//immune/CD8-positive, alpha-be... 630 spleen immune CD8-positive, alpha-beta memory T cell female TSP2 10x 3' v3
   
spleen//immune/CD8-positive, alpha-be... 192 spleen immune CD8-positive, alpha-beta memory T cell female TSP2 Smart-seq2
   
spleen//immune/CD8-positive, alpha-be... 41 spleen immune CD8-positive, alpha-beta T cell female TSP2 10x 3' v3
   
spleen//immune/CD8-positive, alpha-be... 2 spleen immune CD8-positive, alpha-beta T cell female TSP2 Smart-seq2
   
spleen//immune/CD141-positive myeloid... 32 spleen immune CD141-positive myeloid dendritic cell female TSP2 10x 3' v3
   
spleen//immune/CD141-positive myeloid... 1 spleen immune CD141-positive myeloid dendritic cell female TSP2 Smart-seq2
   
spleen//immune/classical monocyte/10x... 828 spleen immune classical monocyte female TSP2 10x 3' v3
   
spleen//immune/classical monocyte/Sma... 165 spleen immune classical monocyte female TSP2 Smart-seq2
   
spleen//endothelial/endothelial cell/... 156 spleen endothelial endothelial cell female TSP2 10x 3' v3
   
spleen//endothelial/endothelial cell/... 2 spleen endothelial endothelial cell female TSP2 Smart-seq2
   
spleen//immune/erythrocyte/10x 3' v3/... 22 spleen immune erythrocyte female TSP2 10x 3' v3
   
spleen//immune/erythrocyte/Smart-seq2... 6 spleen immune erythrocyte female TSP2 Smart-seq2
   
spleen//immune/innate lymphoid cell/1... 27 spleen immune innate lymphoid cell female TSP2 10x 3' v3
   
spleen//immune/macrophage/10x 3' v3/f... 430 spleen immune macrophage female TSP2 10x 3' v3
   
spleen//immune/macrophage/Smart-seq2/... 13 spleen immune macrophage female TSP2 Smart-seq2
   
spleen//immune/mature NK T cell/10x 3... 551 spleen immune mature NK T cell female TSP2 10x 3' v3
   
spleen//immune/mature NK T cell/Smart... 68 spleen immune mature NK T cell female TSP2 Smart-seq2
   
spleen//immune/memory B cell/10x 3' v... 1779 spleen immune memory B cell female TSP2 10x 3' v3
   
spleen//immune/memory B cell/Smart-se... 290 spleen immune memory B cell female TSP2 Smart-seq2
   
spleen//immune/naive B cell/10x 3' v3... 562 spleen immune naive B cell female TSP2 10x 3' v3
   
spleen//immune/naive B cell/Smart-seq... 4 spleen immune naive B cell female TSP2 Smart-seq2
   
spleen//immune/naive thymus-derived C... 189 spleen immune naive thymus-derived CD4-positive, al... female TSP2 10x 3' v3
   
spleen//immune/naive thymus-derived C... 47 spleen immune naive thymus-derived CD4-positive, al... female TSP2 Smart-seq2
   
spleen//immune/naive thymus-derived C... 359 spleen immune naive thymus-derived CD8-positive, al... female TSP2 10x 3' v3
   
spleen//immune/naive thymus-derived C... 19 spleen immune naive thymus-derived CD8-positive, al... female TSP2 Smart-seq2
   
spleen//immune/neutrophil/10x 3' v3/f... 24 spleen immune neutrophil female TSP2 10x 3' v3
   
spleen//immune/neutrophil/Smart-seq2/... 29 spleen immune neutrophil female TSP2 Smart-seq2
   
spleen//immune/plasma cell/10x 3' v3/... 749 spleen immune plasma cell female TSP2 10x 3' v3
   
spleen//immune/plasma cell/Smart-seq2... 56 spleen immune plasma cell female TSP2 Smart-seq2
   
spleen//immune/plasmacytoid dendritic... 2 spleen immune plasmacytoid dendritic cell female TSP2 10x 3' v3
   
spleen//immune/plasmacytoid dendritic... 4 spleen immune plasmacytoid dendritic cell female TSP2 Smart-seq2
   
spleen//immune/platelet/Smart-seq2/fe... 11 spleen immune platelet female TSP2 Smart-seq2
   
spleen//immune/regulatory T cell/10x ... 17 spleen immune regulatory T cell female TSP2 10x 3' v3
   
spleen//immune/regulatory T cell/Smar... 39 spleen immune regulatory T cell female TSP2 Smart-seq2
   
thymus//endothelial/capillary endothe... 842 thymus endothelial capillary endothelial cell female TSP2 10x 3' v3
   
thymus//endothelial/capillary endothe... 137 thymus endothelial capillary endothelial cell female TSP2 Smart-seq2
   
thymus//immune/CD4-positive helper T ... 4248 thymus immune CD4-positive helper T cell female TSP2 10x 3' v3
   
thymus//immune/CD4-positive helper T ... 7 thymus immune CD4-positive helper T cell female TSP2 Smart-seq2
   
thymus//immune/CD8-positive, alpha-be... 349 thymus immune CD8-positive, alpha-beta T cell female TSP2 10x 3' v3
   
thymus//immune/dendritic cell/10x 3' ... 35 thymus immune dendritic cell female TSP2 10x 3' v3
   
thymus//endothelial/endothelial cell ... 179 thymus endothelial endothelial cell of artery female TSP2 10x 3' v3
   
thymus//endothelial/endothelial cell ... 2 thymus endothelial endothelial cell of artery female TSP2 Smart-seq2
   
thymus//endothelial/endothelial cell ... 14 thymus endothelial endothelial cell of lymphatic vessel female TSP2 10x 3' v3
   
thymus//endothelial/endothelial cell ... 1 thymus endothelial endothelial cell of lymphatic vessel female TSP2 Smart-seq2
   
thymus//immune/erythrocyte/10x 3' v3/... 6 thymus immune erythrocyte female TSP2 10x 3' v3
   
thymus//immune/erythrocyte/Smart-seq2... 2 thymus immune erythrocyte female TSP2 Smart-seq2
   
thymus//immune/immature natural kille... 42 thymus immune immature natural killer cell female TSP2 10x 3' v3
   
thymus//immune/immature natural kille... 2 thymus immune immature natural killer cell female TSP2 Smart-seq2
   
thymus//immune/macrophage/10x 3' v3/f... 140 thymus immune macrophage female TSP2 10x 3' v3
   
thymus//immune/macrophage/Smart-seq2/... 18 thymus immune macrophage female TSP2 Smart-seq2
   
thymus//immune/mast cell/10x 3' v3/fe... 10 thymus immune mast cell female TSP2 10x 3' v3
   
thymus//immune/mast cell/Smart-seq2/f... 1 thymus immune mast cell female TSP2 Smart-seq2
   
thymus//immune/mature NK T cell/10x 3... 194 thymus immune mature NK T cell female TSP2 10x 3' v3
   
thymus//immune/memory B cell/10x 3' v... 1829 thymus immune memory B cell female TSP2 10x 3' v3
   
thymus//immune/memory B cell/Smart-se... 16 thymus immune memory B cell female TSP2 Smart-seq2
   
thymus//immune/monocyte/10x 3' v3/female 322 thymus immune monocyte female TSP2 10x 3' v3
   
thymus//immune/monocyte/Smart-seq2/fe... 24 thymus immune monocyte female TSP2 Smart-seq2
   
thymus//immune/naive B cell/10x 3' v3... 873 thymus immune naive B cell female TSP2 10x 3' v3
   
thymus//immune/naive B cell/Smart-seq... 1 thymus immune naive B cell female TSP2 Smart-seq2
   
thymus//immune/plasma cell/10x 3' v3/... 61 thymus immune plasma cell female TSP2 10x 3' v3
   
thymus//immune/plasma cell/Smart-seq2... 28 thymus immune plasma cell female TSP2 Smart-seq2
   
thymus//immune/thymocyte/10x 3' v3/fe... 553 thymus immune thymocyte female TSP2 10x 3' v3
   
thymus//endothelial/vein endothelial ... 568 thymus endothelial vein endothelial cell female TSP2 10x 3' v3
   
thymus//endothelial/vein endothelial ... 94 thymus endothelial vein endothelial cell female TSP2 Smart-seq2
   
trachea//endothelial/endothelial cell... 33 trachea endothelial endothelial cell female TSP2 10x 3' v3
   
trachea//immune/macrophage/10x 3' v3/... 13 trachea immune macrophage female TSP2 10x 3' v3
   
trachea//immune/plasma cell/10x 3' v3... 5 trachea immune plasma cell female TSP2 10x 3' v3
   
vasculature/aorta/immune/B cell/10x 3... 9 vasculature aorta immune B cell female TSP2 10x 3' v3
   
vasculature/aorta/immune/B cell/Smart... 1 vasculature aorta immune B cell female TSP2 Smart-seq2
   
vasculature/aorta/endothelial/endothe... 1274 vasculature aorta endothelial endothelial cell female TSP2 10x 3' v3
   
vasculature/aorta/endothelial/endothe... 275 vasculature aorta endothelial endothelial cell female TSP2 Smart-seq2
   
vasculature/aorta/immune/erythrocyte/... 47 vasculature aorta immune erythrocyte female TSP2 10x 3' v3
   
vasculature/aorta/immune/macrophage/1... 1660 vasculature aorta immune macrophage female TSP2 10x 3' v3
   
vasculature/aorta/immune/macrophage/S... 247 vasculature aorta immune macrophage female TSP2 Smart-seq2
   
vasculature/aorta/immune/mast cell/10... 60 vasculature aorta immune mast cell female TSP2 10x 3' v3
   
vasculature/aorta/immune/mast cell/Sm... 12 vasculature aorta immune mast cell female TSP2 Smart-seq2
   
vasculature/aorta/immune/mature NK T ... 76 vasculature aorta immune mature NK T cell female TSP2 10x 3' v3
   
vasculature/aorta/immune/mature NK T ... 19 vasculature aorta immune mature NK T cell female TSP2 Smart-seq2
   
vasculature/aorta/immune/plasma cell/... 26 vasculature aorta immune plasma cell female TSP2 10x 3' v3
   
vasculature/aorta/immune/plasma cell/... 9 vasculature aorta immune plasma cell female TSP2 Smart-seq2
   
vasculature/aorta/immune/T cell/10x 3... 212 vasculature aorta immune T cell female TSP2 10x 3' v3
   
vasculature/aorta/immune/T cell/Smart... 18 vasculature aorta immune T cell female TSP2 Smart-seq2
   
vasculature//immune/T cell/Smart-seq2... 1 vasculature immune T cell female TSP2 Smart-seq2
View table schema
Data last updated at UCSC: 2022-05-12 04:59:08

Description

This track shows data from The Tabula Sapiens: a multiple organ single cell transcriptomic atlas of humans. The dataset covers ~500,000 cells from a total of 24 human tissues and organs from all regions of the body using both droplet-based and plate-based single-cell RNA-sequencing (scRNA-seq). Samples were taken from the human bladder, blood, bone marrow, eye, fat, heart, kidney, large intestine, liver, lung, lymph node, mammary, muscle, pancreas, prostate, salivary gland, skin, small intestine, spleen, thymus, tongue, trachea, uterus, and vasculature. The dataset includes 264,009 immune cells, 102,580 epithelial cells, 32,701 endothelial cells, and 81,529 stromal cells. A total of 475 distinct cell types were identified.

This track collection contains two bar chart tracks of RNA expression. The first track, Tabula Tissue Cell allows cells to be grouped together and faceted on up to 3 categories: tissue, cell class, and cell type. The second track, Tabula Details allows cells to be grouped together and faceted on up to 7 categories: tissue, cell class, cell type, subtissue, sex, donor, and assay.

Please see tabula-sapiens-portal.ds.czbiohub.org for further interactive displays and additional data.

Display Conventions and Configuration

The cell types are colored by which compartment they belong to according to the following table. In addition, cells found in the Tabula Details track with less than 100 transcripts will be a lighter shade and less concentrated in color to represent a low number of transcripts.

Color Cell Compartment
epithelial
endothelial
germline
immune
stromal

Methods

All tissues

36 tissue specimens comprising 24 unique tissues and organs were collected from 15 human donors (TSP1-15) with a mean age of 51 years. Tissue specimens were collected at various hospital locations in the Northern California region and transported on ice in less than one hour to preserve cell viability. Single cell suspensions from each organ were prepared in tissue expert laboratories at Stanford and UCSF. For each tissue, the dissociated cells were sorted using MACS and FACS to balance immune, stromal, epithelial, and endothelial cell types.

Sequencing libraries for all tissues were prepared using 10x 3' v3.1, 10x 5' v2, and Smart-seq2 (SS2) protocols for Illumina sequencing. Two 10x reactions per organ were loaded with 7,000 cells each with the goal to yield 10,000 QC-passed cells. Four 384-well Smartseq2 plates were run per organ. In most organs, one plate was used for each compartment (epithelial, endothelial, immune, and stromal), however, to capture rare cells, some organ experts allocated cells across the four plates differently. Sequencing runs for droplet libraries were loaded onto the NovaSeq S4 flow cell in sets of 16 to 20 libraries of approximately 5,000 cells per library with the goal of generating 50,000 to 75,000 reads per cell. Plate libraries were run in sets of 20 plates on Novaseq S4 flow cells to allow generating 1M reads per cell, depending on library quality. 152 10x reactions were performed, yielding 454,069 cells passing QC, and 161 smartseq2 plates were processed, yielding 27,051 cells passing QC.

Tissues collected from the same donor were used to study the clonal distribution of T cells between tissues, to understand the tissue specific mutation rate in B cells, and to analyze the cell cycle state and proliferative potential of shared cell types across tissues. RNA splicing analysis was also used to characterize cell type specific splicing and its variation across individuals.

For detailed methods and information on donors for each organ or tissue please refer to Quake et al, 2021 or the Tabula Sapiens website.

Errata

Some cell types, particularly in the intestines, are duplicated due to the use of multiple ontologies for the same cell type. In a future version, we plan to pool the data from these duplicates.

Data Access

The raw bar chart data can be explored interactively with the Table Browser, or the Data Integrator. For automated analysis, the data may be queried from our REST API. Please refer to our mailing list archives for questions, or our Data Access FAQ for more information.

The cell/gene matrix and cell-level metadata was downloaded from the UCSC Cell Browser. The UCSC command line utility matrixClusterColumns, matrixToBarChart, and bedToBigBed were used to transform these into a bar chart format bigBed file that can be visualized. The UCSC utilities can be found on our download server.

Credits

Thanks to the Tabula Sapiens Consortium who worked on producing and publishing this data set. The data were integrated into the UCSC Genome Browser by Jim Kent, Brittney Wick, and Rachel Schwartz.

References

The Tabula Sapiens Consortium, Quake SR., The Tabula Sapiens: A Multiple Organ Single Cell Transcriptomic Atlas of Humans. bioRxiv. 2021 March 4.; doi: https://doi.org/10.1101/2021.07.19.452956.