Schema for chromAlias

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Schema for chromAlias

Database: wuhCor1 Primary Table: chromAlias Row Count: 2 Data last updated: 2020-01-29
Format description: correspondence of UCSC chromosome names to refseq, genbank, and ensembl names
On download server: MariaDB table dump directory

field	example	SQL type	info	description
`alias`	MN908947.3	`varchar(255)`	values	external name
`chrom`	NC_045512v2	`varchar(255)`	values	UCSC genome browser chromosome name
`source`	genbank	`varchar(255)`	values	comma separated list, when available: refseq,genbank,ensembl

Connected Tables and Joining Fields


	wuhCor1.chromInfo.chrom (via chromAlias.chrom)

Sample Rows

alias	chrom	source
MN908947.3	NC_045512v2	genbank
NC_045512.2	NC_045512v2	refseq

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.