Schema for xenoRefFlat
  Database: xenTro10    Primary Table: xenoRefFlat    Row Count: 170,176   Data last updated: 2021-03-24
Format description: A gene prediction with additional geneName field.
On download server: MariaDB table dump directory
fieldexampleSQL type info description
geneName pgavarchar(255) values Name of gene as it appears in genome browser.
name NM_001078583varchar(255) values Name of gene
chrom chr1varchar(255) values Reference sequence chromosome or scaffold
strand +char(1) values + or - for strand
txStart 53888int(10) unsigned range Transcription start position (or end position for minus strand item)
txEnd 78287int(10) unsigned range Transcription end position (or start position for minus strand item)
cdsStart 53888int(10) unsigned range Coding region start (or end position for minus strand item)
cdsEnd 78287int(10) unsigned range Coding region end (or start position for minus strand item)
exonCount 4int(10) unsigned range Number of exons
exonStarts 53888,55059,62337,78203,longblob   Exon start positions (or end positions for minus strand item)
exonEnds 53999,55095,62403,78287,longblob   Exon end positions (or start positions for minus strand item)

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via xenoRefFlat.name)
      hgFixed.gbSeq.acc (via xenoRefFlat.name)
      hgFixed.imageClone.acc (via xenoRefFlat.name)
      xenTro10.xenoRefGene.name (via xenoRefFlat.name)
      xenTro10.xenoRefSeqAli.qName (via xenoRefFlat.name)

Sample Rows
 
geneNamenamechromstrandtxStarttxEndcdsStartcdsEndexonCountexonStartsexonEnds
pgaNM_001078583chr1+53888782875388878287453888,55059,62337,78203,53999,55095,62403,78287,
PGA5NM_001082696chr1+53888876335388887633553888,55059,62286,78215,87552,53999,55095,62391,78275,87633,
PAG-8NM_001285722chr1+53888876335388887633453888,62289,78203,87540,54002,62355,78275,87633,
dok1.LNM_001092439chr1-13004319433813045218822613130043,130079,130203,130359,130449,130532,131117,131252,131472,133759,187527,188121,194261,130070,130100,130219,130408,130532,130574,131206,131463,132165,133933,187623,188418,194338,
mrps26.LNM_001091176chr1-2009212052922009302052655200921,201382,203466,205059,205235,201065,201506,203613,205235,205292,
loxl3bNM_001145684chr1+26312932430526312932430213263129,263593,265371,274812,276003,277895,282114,284401,285972,286198,288415,294496,324228,263326,263756,265398,274982,276163,277934,282273,284643,286086,286202,288550,294608,324305,
loxl3aNM_001199870chr1+26313529461026313529461012263135,263593,265464,274812,276007,278016,282117,284401,285970,286199,288415,294496,263326,263753,265539,274986,276157,278040,282273,284641,286087,286202,288550,294610,
Loxl3NM_001107866chr1+26313832430226313832430214263138,263589,265362,265419,274812,276076,277883,282601,284401,285972,286099,288415,294500,324230,263322,263756,265395,265566,274986,276100,278048,282703,284643,286087,286102,288554,294610,324302,
LOXL3NM_001192969chr1+26313832430226313832430213263138,263589,265368,265419,274812,282180,282601,284401,285972,286099,288415,294496,324228,263322,263756,265395,265566,274986,282255,282703,284643,286087,286102,288550,294608,324302,
LOXL3NM_001289164chr1+26313832430826313832430211263138,263589,274812,282180,282601,284401,285972,286099,288415,294496,324230,263322,263753,274986,282255,282703,284643,286087,286102,288550,294610,324308,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.