Schema for mrnaOrientInfo
  Database: sacCer2    Primary Table: mrnaOrientInfo    Row Count: 1,659   Data last updated: 2020-09-01
Format description: Extra information on ESTs - calculated by polyInfo program
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 585smallint(5) unsigned range Indexing field to speed chromosome range queries.
chrom 2micronvarchar(255) values Reference sequence chromosome or scaffold
chromStart 250int(10) unsigned range Start position in chromosome
chromEnd 1522int(10) unsigned range End position in chromosome
name MN049160varchar(255) values Accession of EST
intronOrientation 0smallint(6) range Orientation of introns with respect to EST
sizePolyA 0smallint(6) range Number of trailing A's
revSizePolyA 0smallint(6) range Number of trailing A's on reverse strand
signalPos 0smallint(6) range Position of start of polyA signal relative to end of EST or 0 if no signal
revSignalPos 0smallint(6) range PolyA signal position on reverse strand if any

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via mrnaOrientInfo.name)
      hgFixed.gbSeq.acc (via mrnaOrientInfo.name)
      hgFixed.imageClone.acc (via mrnaOrientInfo.name)
      hgFixed.refLink.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqStatus.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqSummary.mrnaAcc (via mrnaOrientInfo.name)
      knownGeneV39.kgXref.refseq (via mrnaOrientInfo.name)
      knownGeneV39.knownToRefSeq.value (via mrnaOrientInfo.name)
      sacCer2.all_mrna.qName (via mrnaOrientInfo.name)

Sample Rows
 
binchromchromStartchromEndnameintronOrientationsizePolyArevSizePolyAsignalPosrevSignalPos
5852micron2501522MN04916000000
5852micron18853008MN04916200000
5852micron32703815MN04916100000
5852micron53096198MN04916300000
585chrI2400127969MN04782200000
585chrI4856351707MN04782100000
585chrI5795258463MN04781900000
585chrI7087873762E0024900000
585chrI8332984475MN04781800000
585chrI8728487753MN04781710000

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.